Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0915000 | XP_003616869.1 | 86.196 | 326 | 26 | 3 | 2 | 309 | 109 | 433 | 0.0 | 537 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0915000 | sp|Q84JG2|SWI3B_ARATH | 43.824 | 340 | 146 | 8 | 2 | 302 | 132 | 465 | 1.62e-78 | 249 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0915000 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0915000 | MtrunA17_Chr5g0438861 | 86.196 | 326 | 26 | 3 | 2 | 309 | 109 | 433 | 0.0 | 537 |
| Msa0915000 | MtrunA17_Chr3g0144301 | 79.714 | 350 | 28 | 5 | 2 | 309 | 135 | 483 | 0.0 | 520 |
| Msa0915000 | MtrunA17_Chr6g0470211 | 92.308 | 104 | 8 | 0 | 206 | 309 | 108 | 211 | 1.36e-59 | 189 |
| Msa0915000 | MtrunA17_Chr3g0132021 | 25.680 | 331 | 157 | 7 | 45 | 295 | 203 | 524 | 2.32e-19 | 88.2 |
| Msa0915000 | MtrunA17_Chr6g0470201 | 86.486 | 37 | 4 | 1 | 1 | 37 | 108 | 143 | 1.32e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0915000 | AT2G33610.1 | 43.824 | 340 | 146 | 8 | 2 | 302 | 132 | 465 | 1.65e-79 | 249 |
| Msa0915000 | AT1G21700.1 | 21.523 | 302 | 185 | 6 | 49 | 298 | 362 | 663 | 7.99e-18 | 84.3 |
Find 62 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAAGCTATTACAAATTTC+GGG | 0.188443 | 6_2:+30303473 | Msa0915000:CDS |
| CTTGAAGCTATTACAAATTT+CGG | 0.191024 | 6_2:+30303472 | Msa0915000:CDS |
| GGCTGCTTTCCTTTCTGCTT+TGG | 0.311179 | 6_2:+30303699 | Msa0915000:CDS |
| GCTTTCCTTTCTGCTTTGGC+AGG | 0.337459 | 6_2:+30303703 | Msa0915000:CDS |
| AATGTGTCTCACACCTCTTA+TGG | 0.384773 | 6_2:+30303651 | Msa0915000:CDS |
| TTACAAATTTCGGGGATGAT+TGG | 0.415906 | 6_2:+30303482 | Msa0915000:CDS |
| ATTCGTGGAAACTATCGAAT+TGG | 0.417271 | 6_2:+30303391 | Msa0915000:CDS |
| CCTTTCTGCTTTGGCAGGGA+CGG | 0.421374 | 6_2:+30303708 | Msa0915000:CDS |
| TCTTCGTTTGCTCCAACTGC+TGG | 0.436192 | 6_2:-30304032 | None:intergenic |
| TCTTGCTGCAATGTATTCCT+TGG | 0.449690 | 6_2:-30303814 | None:intergenic |
| CAAAATTGATAAGCTTGTCC+TGG | 0.455951 | 6_2:-30303978 | None:intergenic |
| GCGGATTCTCTTAGCTTCAT+TGG | 0.459418 | 6_2:-30303305 | None:intergenic |
| AGGGTTGCTCATCAAGTTGT+TGG | 0.467288 | 6_2:+30303508 | Msa0915000:CDS |
| CATCATCCTTCTTCTTCGCT+CGG | 0.467402 | 6_2:+30303232 | Msa0915000:CDS |
| GTAGAATTTGACGCTGCGTC+GGG | 0.468365 | 6_2:-30303259 | None:intergenic |
| AAAGCAGCCTGAGCCATGAT+AGG | 0.474193 | 6_2:-30303685 | None:intergenic |
| AATCAACTAGAATTAATTAC+CGG | 0.474504 | 6_2:+30303785 | Msa0915000:CDS |
| CGTAGAATTTGACGCTGCGT+CGG | 0.483795 | 6_2:-30303260 | None:intergenic |
| TTCTACGGAATCTCCTTCTC+TGG | 0.483808 | 6_2:+30303276 | Msa0915000:CDS |
| ATTCTCTTAGCTTCATTGGC+AGG | 0.484706 | 6_2:-30303301 | None:intergenic |
| AGTTCAGATGAAAATAATCC+AGG | 0.500753 | 6_2:+30303960 | Msa0915000:CDS |
| TTGCACGCAATAGAGATCCT+TGG | 0.503227 | 6_2:-30303879 | None:intergenic |
| GGATGCTAGCAATCCTATCA+TGG | 0.508578 | 6_2:+30303672 | Msa0915000:CDS |
| CTTTCCTTTCTGCTTTGGCA+GGG | 0.515547 | 6_2:+30303704 | Msa0915000:CDS |
| ATAAAAGATTGAGCTGATCA+AGG | 0.521081 | 6_2:-30304065 | None:intergenic |
| TAGCAATCCTATCATGGCTC+AGG | 0.529443 | 6_2:+30303678 | Msa0915000:CDS |
| GGATTGCTAGCATCCATAAG+AGG | 0.529525 | 6_2:-30303664 | None:intergenic |
| GGCTTCAACTGATCGCCAAA+AGG | 0.531669 | 6_2:-30303571 | None:intergenic |
| ACGCGCAACACATTCCTTGT+CGG | 0.532524 | 6_2:-30303536 | None:intergenic |
| TGGAAACTATCGAATTGGTA+TGG | 0.532567 | 6_2:+30303396 | Msa0915000:CDS |
| GAATCAGAAACTGTTGCGTC+GGG | 0.534084 | 6_2:+30303613 | Msa0915000:CDS |
| CGTCATATTATTCTTATCAC+AGG | 0.538639 | 6_2:-30303350 | None:intergenic |
| TGATTGCCTTCTCTGGTCGT+TGG | 0.540914 | 6_2:-30304105 | None:intergenic |
| TTAATTACCGGTCATTTCCA+AGG | 0.542958 | 6_2:+30303797 | Msa0915000:CDS |
| ATTTCGGGGATGATTGGAAG+AGG | 0.548838 | 6_2:+30303488 | Msa0915000:CDS |
| AGCAAGCCATGCAGCCACTG+CGG | 0.548843 | 6_2:-30303324 | None:intergenic |
| GATTCACATTCAGCATCAGC+GGG | 0.549492 | 6_2:-30303595 | None:intergenic |
| TTCTGCTTTGGCAGGGACGG+AGG | 0.550159 | 6_2:+30303711 | Msa0915000:CDS |
| TGTGCGAGGTGTTATATTCG+TGG | 0.552624 | 6_2:+30303376 | Msa0915000:CDS |
| GATGCTTCTGTTGCATGCGA+TGG | 0.554502 | 6_2:+30303835 | Msa0915000:CDS |
| TGAGGATTTAGACGTGCTGA+TGG | 0.555586 | 6_2:+30303999 | Msa0915000:CDS |
| TGCAAATTTACAGCTTGAGA+AGG | 0.556628 | 6_2:+30303897 | Msa0915000:CDS |
| ATGTATTCCTTGGAAATGAC+CGG | 0.559908 | 6_2:-30303804 | None:intergenic |
| TCATTGGCAGGCACCAGAGA+AGG | 0.560713 | 6_2:-30303289 | None:intergenic |
| TGAATCAGAAACTGTTGCGT+CGG | 0.561653 | 6_2:+30303612 | Msa0915000:CDS |
| TTGCTCATCAAGTTGTTGGT+AGG | 0.563248 | 6_2:+30303512 | Msa0915000:CDS |
| CCGTCCCTGCCAAAGCAGAA+AGG | 0.564962 | 6_2:-30303708 | None:intergenic |
| GGTTTACCGAGCGAAGAAGA+AGG | 0.567347 | 6_2:-30303238 | None:intergenic |
| GAGAATCCGCAGTGGCTGCA+TGG | 0.573168 | 6_2:+30303318 | Msa0915000:CDS |
| CGACGCAGCGTCAAATTCTA+CGG | 0.581543 | 6_2:+30303261 | Msa0915000:CDS |
| AATGCTTCAGATTCTATCCA+AGG | 0.586687 | 6_2:+30303862 | Msa0915000:CDS |
| TCTGCACCAACGACCAGAGA+AGG | 0.588232 | 6_2:+30304099 | Msa0915000:CDS |
| TGATTCACATTCAGCATCAG+CGG | 0.598353 | 6_2:-30303596 | None:intergenic |
| GCTTCTGTTGCATGCGATGG+TGG | 0.606537 | 6_2:+30303838 | Msa0915000:CDS |
| TTTCGGGGATGATTGGAAGA+GGG | 0.613337 | 6_2:+30303489 | Msa0915000:CDS |
| TGAAGCTATTACAAATTTCG+GGG | 0.621595 | 6_2:+30303474 | Msa0915000:CDS |
| AATTGGTATGGAGATAAGTG+AGG | 0.626402 | 6_2:+30303408 | Msa0915000:CDS |
| TCACATTCAGCATCAGCGGG+AGG | 0.629791 | 6_2:-30303592 | None:intergenic |
| AGTTGTTGGTAGGACCGACA+AGG | 0.658858 | 6_2:+30303522 | Msa0915000:CDS |
| ATAATATGACGTTGTGTGCG+AGG | 0.667737 | 6_2:+30303362 | Msa0915000:CDS |
| TGAGAAGGAAGAATCAGACG+TGG | 0.680762 | 6_2:+30303912 | Msa0915000:CDS |
| GAAGCTAAGAGAATCCGCAG+TGG | 0.777494 | 6_2:+30303310 | Msa0915000:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCAACTAGAATTAATTAC+CGG | + | chr6_2:30303785-30303804 | Msa0915000:CDS | 20.0% |
| !! | AATCAACTAGAATTAATTAC+CGG | + | chr6_2:30303785-30303804 | Msa0915000:CDS | 20.0% |
| ! | CTTGAAGCTATTACAAATTT+CGG | + | chr6_2:30303472-30303491 | Msa0915000:CDS | 25.0% |
| ! | TTGAAGCTATTACAAATTTC+GGG | + | chr6_2:30303473-30303492 | Msa0915000:CDS | 25.0% |
| ! | CTTGAAGCTATTACAAATTT+CGG | + | chr6_2:30303472-30303491 | Msa0915000:CDS | 25.0% |
| ! | TTGAAGCTATTACAAATTTC+GGG | + | chr6_2:30303473-30303492 | Msa0915000:CDS | 25.0% |
| CGTCATATTATTCTTATCAC+AGG | - | chr6_2:30303353-30303372 | None:intergenic | 30.0% | |
| TGAAGCTATTACAAATTTCG+GGG | + | chr6_2:30303474-30303493 | Msa0915000:CDS | 30.0% | |
| AGTTCAGATGAAAATAATCC+AGG | + | chr6_2:30303960-30303979 | Msa0915000:CDS | 30.0% | |
| ATAAAAGATTGAGCTGATCA+AGG | - | chr6_2:30304068-30304087 | None:intergenic | 30.0% | |
| CGTCATATTATTCTTATCAC+AGG | - | chr6_2:30303353-30303372 | None:intergenic | 30.0% | |
| TGAAGCTATTACAAATTTCG+GGG | + | chr6_2:30303474-30303493 | Msa0915000:CDS | 30.0% | |
| AGTTCAGATGAAAATAATCC+AGG | + | chr6_2:30303960-30303979 | Msa0915000:CDS | 30.0% | |
| ATAAAAGATTGAGCTGATCA+AGG | - | chr6_2:30304068-30304087 | None:intergenic | 30.0% | |
| ATTCGTGGAAACTATCGAAT+TGG | + | chr6_2:30303391-30303410 | Msa0915000:CDS | 35.0% | |
| TGGAAACTATCGAATTGGTA+TGG | + | chr6_2:30303396-30303415 | Msa0915000:CDS | 35.0% | |
| AATTGGTATGGAGATAAGTG+AGG | + | chr6_2:30303408-30303427 | Msa0915000:CDS | 35.0% | |
| GTGAGGAGACAAAAACTAAA+TGG | + | chr6_2:30303425-30303444 | Msa0915000:CDS | 35.0% | |
| !! | GACAAAAACTAAATGGACTG+AGG | + | chr6_2:30303432-30303451 | Msa0915000:CDS | 35.0% |
| !! | AAAAACTAAATGGACTGAGG+AGG | + | chr6_2:30303435-30303454 | Msa0915000:CDS | 35.0% |
| TTACAAATTTCGGGGATGAT+TGG | + | chr6_2:30303482-30303501 | Msa0915000:CDS | 35.0% | |
| !! | CGTTTTCTAGAGATTCCTTT+TGG | + | chr6_2:30303556-30303575 | Msa0915000:CDS | 35.0% |
| TTAATTACCGGTCATTTCCA+AGG | + | chr6_2:30303797-30303816 | Msa0915000:CDS | 35.0% | |
| ATGTATTCCTTGGAAATGAC+CGG | - | chr6_2:30303807-30303826 | None:intergenic | 35.0% | |
| AATGCTTCAGATTCTATCCA+AGG | + | chr6_2:30303862-30303881 | Msa0915000:CDS | 35.0% | |
| TGCAAATTTACAGCTTGAGA+AGG | + | chr6_2:30303897-30303916 | Msa0915000:CDS | 35.0% | |
| CAAAATTGATAAGCTTGTCC+TGG | - | chr6_2:30303981-30304000 | None:intergenic | 35.0% | |
| ! | GGACAAGCTTATCAATTTTG+AGG | + | chr6_2:30303981-30304000 | Msa0915000:CDS | 35.0% |
| ! | TTTTACATGATTGCCTTCTC+TGG | - | chr6_2:30304115-30304134 | None:intergenic | 35.0% |
| ATTCGTGGAAACTATCGAAT+TGG | + | chr6_2:30303391-30303410 | Msa0915000:CDS | 35.0% | |
| TGGAAACTATCGAATTGGTA+TGG | + | chr6_2:30303396-30303415 | Msa0915000:CDS | 35.0% | |
| AATTGGTATGGAGATAAGTG+AGG | + | chr6_2:30303408-30303427 | Msa0915000:CDS | 35.0% | |
| GTGAGGAGACAAAAACTAAA+TGG | + | chr6_2:30303425-30303444 | Msa0915000:CDS | 35.0% | |
| !! | GACAAAAACTAAATGGACTG+AGG | + | chr6_2:30303432-30303451 | Msa0915000:CDS | 35.0% |
| !! | AAAAACTAAATGGACTGAGG+AGG | + | chr6_2:30303435-30303454 | Msa0915000:CDS | 35.0% |
| TTACAAATTTCGGGGATGAT+TGG | + | chr6_2:30303482-30303501 | Msa0915000:CDS | 35.0% | |
| !! | CGTTTTCTAGAGATTCCTTT+TGG | + | chr6_2:30303556-30303575 | Msa0915000:CDS | 35.0% |
| TTAATTACCGGTCATTTCCA+AGG | + | chr6_2:30303797-30303816 | Msa0915000:CDS | 35.0% | |
| ATGTATTCCTTGGAAATGAC+CGG | - | chr6_2:30303807-30303826 | None:intergenic | 35.0% | |
| AATGCTTCAGATTCTATCCA+AGG | + | chr6_2:30303862-30303881 | Msa0915000:CDS | 35.0% | |
| TGCAAATTTACAGCTTGAGA+AGG | + | chr6_2:30303897-30303916 | Msa0915000:CDS | 35.0% | |
| CAAAATTGATAAGCTTGTCC+TGG | - | chr6_2:30303981-30304000 | None:intergenic | 35.0% | |
| ! | GGACAAGCTTATCAATTTTG+AGG | + | chr6_2:30303981-30304000 | Msa0915000:CDS | 35.0% |
| ! | TTTTACATGATTGCCTTCTC+TGG | - | chr6_2:30304115-30304134 | None:intergenic | 35.0% |
| ATTCTCTTAGCTTCATTGGC+AGG | - | chr6_2:30303304-30303323 | None:intergenic | 40.0% | |
| ATAATATGACGTTGTGTGCG+AGG | + | chr6_2:30303362-30303381 | Msa0915000:CDS | 40.0% | |
| ! | TTGCTCATCAAGTTGTTGGT+AGG | + | chr6_2:30303512-30303531 | Msa0915000:CDS | 40.0% |
| TGATTCACATTCAGCATCAG+CGG | - | chr6_2:30303599-30303618 | None:intergenic | 40.0% | |
| TGAATCAGAAACTGTTGCGT+CGG | + | chr6_2:30303612-30303631 | Msa0915000:CDS | 40.0% | |
| AATGTGTCTCACACCTCTTA+TGG | + | chr6_2:30303651-30303670 | Msa0915000:CDS | 40.0% | |
| TCTTGCTGCAATGTATTCCT+TGG | - | chr6_2:30303817-30303836 | None:intergenic | 40.0% | |
| !! | CGTGGAAAAAGCTATTTCTG+AGG | + | chr6_2:30303930-30303949 | Msa0915000:CDS | 40.0% |
| ATTCTCTTAGCTTCATTGGC+AGG | - | chr6_2:30303304-30303323 | None:intergenic | 40.0% | |
| ATAATATGACGTTGTGTGCG+AGG | + | chr6_2:30303362-30303381 | Msa0915000:CDS | 40.0% | |
| ! | TTGCTCATCAAGTTGTTGGT+AGG | + | chr6_2:30303512-30303531 | Msa0915000:CDS | 40.0% |
| TGATTCACATTCAGCATCAG+CGG | - | chr6_2:30303599-30303618 | None:intergenic | 40.0% | |
| TGAATCAGAAACTGTTGCGT+CGG | + | chr6_2:30303612-30303631 | Msa0915000:CDS | 40.0% | |
| AATGTGTCTCACACCTCTTA+TGG | + | chr6_2:30303651-30303670 | Msa0915000:CDS | 40.0% | |
| TCTTGCTGCAATGTATTCCT+TGG | - | chr6_2:30303817-30303836 | None:intergenic | 40.0% | |
| !! | CGTGGAAAAAGCTATTTCTG+AGG | + | chr6_2:30303930-30303949 | Msa0915000:CDS | 40.0% |
| CATCATCCTTCTTCTTCGCT+CGG | + | chr6_2:30303232-30303251 | Msa0915000:CDS | 45.0% | |
| TTCTACGGAATCTCCTTCTC+TGG | + | chr6_2:30303276-30303295 | Msa0915000:CDS | 45.0% | |
| GCGGATTCTCTTAGCTTCAT+TGG | - | chr6_2:30303308-30303327 | None:intergenic | 45.0% | |
| ! | TGTGCGAGGTGTTATATTCG+TGG | + | chr6_2:30303376-30303395 | Msa0915000:CDS | 45.0% |
| ATTTCGGGGATGATTGGAAG+AGG | + | chr6_2:30303488-30303507 | Msa0915000:CDS | 45.0% | |
| TTTCGGGGATGATTGGAAGA+GGG | + | chr6_2:30303489-30303508 | Msa0915000:CDS | 45.0% | |
| ! | AGGGTTGCTCATCAAGTTGT+TGG | + | chr6_2:30303508-30303527 | Msa0915000:CDS | 45.0% |
| GATTCACATTCAGCATCAGC+GGG | - | chr6_2:30303598-30303617 | None:intergenic | 45.0% | |
| GAATCAGAAACTGTTGCGTC+GGG | + | chr6_2:30303613-30303632 | Msa0915000:CDS | 45.0% | |
| GGATTGCTAGCATCCATAAG+AGG | - | chr6_2:30303667-30303686 | None:intergenic | 45.0% | |
| GGATGCTAGCAATCCTATCA+TGG | + | chr6_2:30303672-30303691 | Msa0915000:CDS | 45.0% | |
| TAGCAATCCTATCATGGCTC+AGG | + | chr6_2:30303678-30303697 | Msa0915000:CDS | 45.0% | |
| CTTTCCTTTCTGCTTTGGCA+GGG | + | chr6_2:30303704-30303723 | Msa0915000:CDS | 45.0% | |
| TTGCACGCAATAGAGATCCT+TGG | - | chr6_2:30303882-30303901 | None:intergenic | 45.0% | |
| TGAGAAGGAAGAATCAGACG+TGG | + | chr6_2:30303912-30303931 | Msa0915000:CDS | 45.0% | |
| TGAGGATTTAGACGTGCTGA+TGG | + | chr6_2:30303999-30304018 | Msa0915000:CDS | 45.0% | |
| CATCATCCTTCTTCTTCGCT+CGG | + | chr6_2:30303232-30303251 | Msa0915000:CDS | 45.0% | |
| TTCTACGGAATCTCCTTCTC+TGG | + | chr6_2:30303276-30303295 | Msa0915000:CDS | 45.0% | |
| GCGGATTCTCTTAGCTTCAT+TGG | - | chr6_2:30303308-30303327 | None:intergenic | 45.0% | |
| ! | TGTGCGAGGTGTTATATTCG+TGG | + | chr6_2:30303376-30303395 | Msa0915000:CDS | 45.0% |
| ATTTCGGGGATGATTGGAAG+AGG | + | chr6_2:30303488-30303507 | Msa0915000:CDS | 45.0% | |
| TTTCGGGGATGATTGGAAGA+GGG | + | chr6_2:30303489-30303508 | Msa0915000:CDS | 45.0% | |
| ! | AGGGTTGCTCATCAAGTTGT+TGG | + | chr6_2:30303508-30303527 | Msa0915000:CDS | 45.0% |
| GATTCACATTCAGCATCAGC+GGG | - | chr6_2:30303598-30303617 | None:intergenic | 45.0% | |
| GAATCAGAAACTGTTGCGTC+GGG | + | chr6_2:30303613-30303632 | Msa0915000:CDS | 45.0% | |
| GGATTGCTAGCATCCATAAG+AGG | - | chr6_2:30303667-30303686 | None:intergenic | 45.0% | |
| GGATGCTAGCAATCCTATCA+TGG | + | chr6_2:30303672-30303691 | Msa0915000:CDS | 45.0% | |
| TAGCAATCCTATCATGGCTC+AGG | + | chr6_2:30303678-30303697 | Msa0915000:CDS | 45.0% | |
| CTTTCCTTTCTGCTTTGGCA+GGG | + | chr6_2:30303704-30303723 | Msa0915000:CDS | 45.0% | |
| TTGCACGCAATAGAGATCCT+TGG | - | chr6_2:30303882-30303901 | None:intergenic | 45.0% | |
| TGAGAAGGAAGAATCAGACG+TGG | + | chr6_2:30303912-30303931 | Msa0915000:CDS | 45.0% | |
| TGAGGATTTAGACGTGCTGA+TGG | + | chr6_2:30303999-30304018 | Msa0915000:CDS | 45.0% | |
| GGTTTACCGAGCGAAGAAGA+AGG | - | chr6_2:30303241-30303260 | None:intergenic | 50.0% | |
| GTAGAATTTGACGCTGCGTC+GGG | - | chr6_2:30303262-30303281 | None:intergenic | 50.0% | |
| CGTAGAATTTGACGCTGCGT+CGG | - | chr6_2:30303263-30303282 | None:intergenic | 50.0% | |
| CGACGCAGCGTCAAATTCTA+CGG | + | chr6_2:30303261-30303280 | Msa0915000:CDS | 50.0% | |
| GAAGCTAAGAGAATCCGCAG+TGG | + | chr6_2:30303310-30303329 | Msa0915000:CDS | 50.0% | |
| ! | AGTTGTTGGTAGGACCGACA+AGG | + | chr6_2:30303522-30303541 | Msa0915000:CDS | 50.0% |
| ACGCGCAACACATTCCTTGT+CGG | - | chr6_2:30303539-30303558 | None:intergenic | 50.0% | |
| GGCTTCAACTGATCGCCAAA+AGG | - | chr6_2:30303574-30303593 | None:intergenic | 50.0% | |
| AAAGCAGCCTGAGCCATGAT+AGG | - | chr6_2:30303688-30303707 | None:intergenic | 50.0% | |
| ! | GGCTGCTTTCCTTTCTGCTT+TGG | + | chr6_2:30303699-30303718 | Msa0915000:CDS | 50.0% |
| GCTTTCCTTTCTGCTTTGGC+AGG | + | chr6_2:30303703-30303722 | Msa0915000:CDS | 50.0% | |
| GATGCTTCTGTTGCATGCGA+TGG | + | chr6_2:30303835-30303854 | Msa0915000:CDS | 50.0% | |
| GGAAAAAGAACGCCAGCAGT+TGG | + | chr6_2:30304020-30304039 | Msa0915000:CDS | 50.0% | |
| TCTTCGTTTGCTCCAACTGC+TGG | - | chr6_2:30304035-30304054 | None:intergenic | 50.0% | |
| TGATTGCCTTCTCTGGTCGT+TGG | - | chr6_2:30304108-30304127 | None:intergenic | 50.0% | |
| GGTTTACCGAGCGAAGAAGA+AGG | - | chr6_2:30303241-30303260 | None:intergenic | 50.0% | |
| GTAGAATTTGACGCTGCGTC+GGG | - | chr6_2:30303262-30303281 | None:intergenic | 50.0% | |
| CGTAGAATTTGACGCTGCGT+CGG | - | chr6_2:30303263-30303282 | None:intergenic | 50.0% | |
| CGACGCAGCGTCAAATTCTA+CGG | + | chr6_2:30303261-30303280 | Msa0915000:CDS | 50.0% | |
| GAAGCTAAGAGAATCCGCAG+TGG | + | chr6_2:30303310-30303329 | Msa0915000:CDS | 50.0% | |
| ! | AGTTGTTGGTAGGACCGACA+AGG | + | chr6_2:30303522-30303541 | Msa0915000:CDS | 50.0% |
| ACGCGCAACACATTCCTTGT+CGG | - | chr6_2:30303539-30303558 | None:intergenic | 50.0% | |
| GGCTTCAACTGATCGCCAAA+AGG | - | chr6_2:30303574-30303593 | None:intergenic | 50.0% | |
| AAAGCAGCCTGAGCCATGAT+AGG | - | chr6_2:30303688-30303707 | None:intergenic | 50.0% | |
| ! | GGCTGCTTTCCTTTCTGCTT+TGG | + | chr6_2:30303699-30303718 | Msa0915000:CDS | 50.0% |
| GCTTTCCTTTCTGCTTTGGC+AGG | + | chr6_2:30303703-30303722 | Msa0915000:CDS | 50.0% | |
| GATGCTTCTGTTGCATGCGA+TGG | + | chr6_2:30303835-30303854 | Msa0915000:CDS | 50.0% | |
| GGAAAAAGAACGCCAGCAGT+TGG | + | chr6_2:30304020-30304039 | Msa0915000:CDS | 50.0% | |
| TCTTCGTTTGCTCCAACTGC+TGG | - | chr6_2:30304035-30304054 | None:intergenic | 50.0% | |
| TGATTGCCTTCTCTGGTCGT+TGG | - | chr6_2:30304108-30304127 | None:intergenic | 50.0% | |
| TCATTGGCAGGCACCAGAGA+AGG | - | chr6_2:30303292-30303311 | None:intergenic | 55.0% | |
| TCACATTCAGCATCAGCGGG+AGG | - | chr6_2:30303595-30303614 | None:intergenic | 55.0% | |
| CCTTTCTGCTTTGGCAGGGA+CGG | + | chr6_2:30303708-30303727 | Msa0915000:CDS | 55.0% | |
| GCTTCTGTTGCATGCGATGG+TGG | + | chr6_2:30303838-30303857 | Msa0915000:CDS | 55.0% | |
| TCTGCACCAACGACCAGAGA+AGG | + | chr6_2:30304099-30304118 | Msa0915000:CDS | 55.0% | |
| TCATTGGCAGGCACCAGAGA+AGG | - | chr6_2:30303292-30303311 | None:intergenic | 55.0% | |
| TCACATTCAGCATCAGCGGG+AGG | - | chr6_2:30303595-30303614 | None:intergenic | 55.0% | |
| CCTTTCTGCTTTGGCAGGGA+CGG | + | chr6_2:30303708-30303727 | Msa0915000:CDS | 55.0% | |
| GCTTCTGTTGCATGCGATGG+TGG | + | chr6_2:30303838-30303857 | Msa0915000:CDS | 55.0% | |
| TCTGCACCAACGACCAGAGA+AGG | + | chr6_2:30304099-30304118 | Msa0915000:CDS | 55.0% | |
| GAGAATCCGCAGTGGCTGCA+TGG | + | chr6_2:30303318-30303337 | Msa0915000:CDS | 60.0% | |
| AGCAAGCCATGCAGCCACTG+CGG | - | chr6_2:30303327-30303346 | None:intergenic | 60.0% | |
| CCGTCCCTGCCAAAGCAGAA+AGG | - | chr6_2:30303711-30303730 | None:intergenic | 60.0% | |
| TTCTGCTTTGGCAGGGACGG+AGG | + | chr6_2:30303711-30303730 | Msa0915000:CDS | 60.0% | |
| GAGAATCCGCAGTGGCTGCA+TGG | + | chr6_2:30303318-30303337 | Msa0915000:CDS | 60.0% | |
| AGCAAGCCATGCAGCCACTG+CGG | - | chr6_2:30303327-30303346 | None:intergenic | 60.0% | |
| CCGTCCCTGCCAAAGCAGAA+AGG | - | chr6_2:30303711-30303730 | None:intergenic | 60.0% | |
| TTCTGCTTTGGCAGGGACGG+AGG | + | chr6_2:30303711-30303730 | Msa0915000:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 30303214 | 30304143 | 30303214 | ID=Msa0915000;Name=Msa0915000 |
| chr6_2 | mRNA | 30303214 | 30304143 | 30303214 | ID=Msa0915000-mRNA-1;Parent=Msa0915000;Name=Msa0915000-mRNA-1;_AED=0.25;_eAED=0.29;_QI=0|-1|0|1|-1|1|1|0|309 |
| chr6_2 | exon | 30303214 | 30304143 | 30303214 | ID=Msa0915000-mRNA-1:exon:5514;Parent=Msa0915000-mRNA-1 |
| chr6_2 | CDS | 30303214 | 30304143 | 30303214 | ID=Msa0915000-mRNA-1:cds;Parent=Msa0915000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
