Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0917610 | XP_024637264.1 | 80.952 | 147 | 17 | 1 | 43 | 178 | 19 | 165 | 5.21e-81 | 247 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0917610 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0917610 | MtrunA17_Chr5g0393501 | 26.012 | 173 | 108 | 3 | 25 | 177 | 69 | 241 | 9.29e-15 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 42 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGAATTTGCCGAAAGTATT+AGG | 0.246016 | 6_2:-42455086 | None:intergenic |
| TTTAGTGGAAGTAAGATTAT+TGG | 0.286378 | 6_2:+42454800 | Msa0917610:CDS |
| TTGAAGTTCCTATCTGGATA+TGG | 0.289906 | 6_2:+42454939 | Msa0917610:intron |
| GTACCTTTGAAGTTCCTATC+TGG | 0.333773 | 6_2:+42454933 | Msa0917610:intron |
| AATCGTGATGTTTCACTCTA+AGG | 0.341127 | 6_2:-42455106 | None:intergenic |
| TAGGAACTACCTAATACTTT+CGG | 0.399722 | 6_2:+42455077 | Msa0917610:intron |
| TCCGAACATCACATTTGGTA+TGG | 0.417548 | 6_2:-42455192 | None:intergenic |
| ATCTACTTCCACCAAGGTAC+TGG | 0.428620 | 6_2:-42454826 | None:intergenic |
| AAGATGATATTGATATTAAG+AGG | 0.448218 | 6_2:+42452333 | Msa0917610:five_prime_UTR |
| CCGAACATCACATTTGGTAT+GGG | 0.451435 | 6_2:-42455191 | None:intergenic |
| GAGAGATACTAGCAGGAAAT+CGG | 0.456574 | 6_2:-42452421 | None:intergenic |
| TTGTGCTGCCAATGGTATTG+AGG | 0.463000 | 6_2:+42455232 | Msa0917610:CDS |
| CAGACATTCACGATATAACT+TGG | 0.463967 | 6_2:-42452390 | None:intergenic |
| AGATGGTTGGACGAGTTTAG+TGG | 0.470972 | 6_2:+42454785 | Msa0917610:CDS |
| CCAAATGTGATGTTCGGAAA+AGG | 0.475440 | 6_2:+42455197 | Msa0917610:CDS |
| CCCATACCAAATGTGATGTT+CGG | 0.477035 | 6_2:+42455191 | Msa0917610:CDS |
| TGCCACACTCATGGAATGAT+AGG | 0.480870 | 6_2:-42454897 | None:intergenic |
| TCGTCGATCCATATCCAGAT+AGG | 0.486078 | 6_2:-42454947 | None:intergenic |
| GTCATGCGTTTATCAACGCT+TGG | 0.494559 | 6_2:-42455315 | None:intergenic |
| TGTGCTGCCAATGGTATTGA+GGG | 0.501205 | 6_2:+42455233 | Msa0917610:CDS |
| ATTATTGGTTTCCAGTACCT+TGG | 0.515320 | 6_2:+42454815 | Msa0917610:CDS |
| ACACGATGTTGCCACACTCA+TGG | 0.518160 | 6_2:-42454906 | None:intergenic |
| GGCCGTTGTTGACAGATGGT+TGG | 0.518692 | 6_2:+42454772 | Msa0917610:CDS |
| ACAGGAATGATATTGTCATA+AGG | 0.528831 | 6_2:-42455146 | None:intergenic |
| AGTCGGCCGTTGTTGACAGA+TGG | 0.531450 | 6_2:+42454768 | Msa0917610:intron |
| CGAACATCACATTTGGTATG+GGG | 0.552019 | 6_2:-42455190 | None:intergenic |
| ATTGGTTTCCAGTACCTTGG+TGG | 0.553166 | 6_2:+42454818 | Msa0917610:CDS |
| TCTGTATATTTGAGTCTCAC+AGG | 0.555272 | 6_2:-42455164 | None:intergenic |
| GTCTCCGCCCTCAATACCAT+TGG | 0.581950 | 6_2:-42455240 | None:intergenic |
| AGTTATATCGTGAATGTCTG+TGG | 0.586194 | 6_2:+42452393 | Msa0917610:CDS |
| CACGATTACGTCATGTTGTG+CGG | 0.590860 | 6_2:+42455122 | Msa0917610:CDS |
| ATGTGATGTTCGGAAAAGGT+TGG | 0.606400 | 6_2:+42455201 | Msa0917610:CDS |
| TATCGTGAATGTCTGTGGAA+AGG | 0.616071 | 6_2:+42452398 | Msa0917610:CDS |
| TTTCAAGTGCAAGTGCGTCG+TGG | 0.639560 | 6_2:+42455271 | Msa0917610:CDS |
| GCCACACTCATGGAATGATA+GGG | 0.654738 | 6_2:-42454896 | None:intergenic |
| ACACTCATGGAATGATAGGG+TGG | 0.656827 | 6_2:-42454893 | None:intergenic |
| GTGATATGTGACATGTAACA+TGG | 0.673096 | 6_2:-42452357 | None:intergenic |
| TTTGAAATCTACTTCCACCA+AGG | 0.681040 | 6_2:-42454832 | None:intergenic |
| TGGATCGACGAAATCACCGA+AGG | 0.700849 | 6_2:+42454959 | Msa0917610:CDS |
| GTCCAACCATCTGTCAACAA+CGG | 0.705745 | 6_2:-42454774 | None:intergenic |
| TGATATGTGACATGTAACAT+GGG | 0.728919 | 6_2:-42452356 | None:intergenic |
| GCTGCCAATGGTATTGAGGG+CGG | 0.739556 | 6_2:+42455236 | Msa0917610:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTCTAAAGAAATAGAATA+TGG | + | chr6_2:42452641-42452660 | Msa0917610:intron | 15.0% |
| !! | TAAAAATATTTCTTTCAACA+TGG | - | chr6_2:42452772-42452791 | None:intergenic | 15.0% |
| !!! | AATACTTATATTGTTTTGTA+GGG | + | chr6_2:42453468-42453487 | Msa0917610:intron | 15.0% |
| !!! | AAATCTAGCTTTTATAATAA+AGG | - | chr6_2:42453989-42454008 | None:intergenic | 15.0% |
| !! | AAGATGATATTGATATTAAG+AGG | + | chr6_2:42452333-42452352 | Msa0917610:five_prime_UTR | 20.0% |
| !! | AAACAAATAATGATAGTAAG+AGG | - | chr6_2:42452719-42452738 | None:intergenic | 20.0% |
| !!! | TATCATTATTTGTTTTCCAT+TGG | + | chr6_2:42452724-42452743 | Msa0917610:intron | 20.0% |
| !!! | ATCATTATTTGTTTTCCATT+GGG | + | chr6_2:42452725-42452744 | Msa0917610:intron | 20.0% |
| !!! | AGAAATATTTTTATAGCTGT+CGG | + | chr6_2:42452779-42452798 | Msa0917610:intron | 20.0% |
| !! | TTTAATGAGAAAAGATAATG+AGG | - | chr6_2:42452823-42452842 | None:intergenic | 20.0% |
| !! | TAAATGAATATCAGAGAATA+AGG | + | chr6_2:42452909-42452928 | Msa0917610:intron | 20.0% |
| !!! | CAATACTTATATTGTTTTGT+AGG | + | chr6_2:42453467-42453486 | Msa0917610:intron | 20.0% |
| !!! | GTCATTTATGTTATTGATTT+TGG | - | chr6_2:42453734-42453753 | None:intergenic | 20.0% |
| !!! | AAAATTTTAGTTTCAACCTT+AGG | - | chr6_2:42453822-42453841 | None:intergenic | 20.0% |
| !! | TAACTTTAGTGGTAAAATTT+GGG | - | chr6_2:42454419-42454438 | None:intergenic | 20.0% |
| !! | ATAACTTTAGTGGTAAAATT+TGG | - | chr6_2:42454420-42454439 | None:intergenic | 20.0% |
| !! | TTTCTATTTAAATACGATGA+AGG | + | chr6_2:42454501-42454520 | Msa0917610:intron | 20.0% |
| !! | TTCTATTTAAATACGATGAA+GGG | + | chr6_2:42454502-42454521 | Msa0917610:intron | 20.0% |
| !!! | ATGAAAATTAAATCCTCTTT+TGG | + | chr6_2:42454547-42454566 | Msa0917610:intron | 20.0% |
| !! | TTAGTCAGTGTATTAAAAAA+AGG | - | chr6_2:42454624-42454643 | None:intergenic | 20.0% |
| !! | AAATATTTAGCAACAAAGAA+TGG | - | chr6_2:42454672-42454691 | None:intergenic | 20.0% |
| !! | AAAAAACAATAAACAACCTT+CGG | - | chr6_2:42454978-42454997 | None:intergenic | 20.0% |
| !!! | CAGTTTTTCTTTTGTTTTTT+AGG | + | chr6_2:42455058-42455077 | Msa0917610:intron | 20.0% |
| !! | ATCTTGATGACTATACAAAA+GGG | - | chr6_2:42452306-42452325 | None:intergenic | 25.0% |
| !! | TATCTTGATGACTATACAAA+AGG | - | chr6_2:42452307-42452326 | None:intergenic | 25.0% |
| !!! | GAAATATTTTTATAGCTGTC+GGG | + | chr6_2:42452780-42452799 | Msa0917610:intron | 25.0% |
| !! | TGGAAATTTTTCATTCGATA+CGG | + | chr6_2:42453220-42453239 | Msa0917610:intron | 25.0% |
| ! | TGCACTTAAGAATTAATTCT+AGG | + | chr6_2:42453247-42453266 | Msa0917610:intron | 25.0% |
| ! | GCACTTAAGAATTAATTCTA+GGG | + | chr6_2:42453248-42453267 | Msa0917610:intron | 25.0% |
| ! | CAGTCACAGATTATTAATTA+TGG | - | chr6_2:42453523-42453542 | None:intergenic | 25.0% |
| !! | AAGTTGTATGTTTTCATCTA+TGG | - | chr6_2:42453552-42453571 | None:intergenic | 25.0% |
| !! | CAATCAAACAAATTCAAGTT+GGG | + | chr6_2:42453626-42453645 | Msa0917610:intron | 25.0% |
| !!! | AATCAAACAAATTCAAGTTG+GGG | + | chr6_2:42453627-42453646 | Msa0917610:intron | 25.0% |
| !! | TTATAAAAGCTAGATTTGCT+TGG | + | chr6_2:42453992-42454011 | Msa0917610:intron | 25.0% |
| ! | TTAGTCATTAGTACATGTTT+AGG | - | chr6_2:42454074-42454093 | None:intergenic | 25.0% |
| ! | ATTGTTAGACTTTGAATCAA+CGG | - | chr6_2:42454141-42454160 | None:intergenic | 25.0% |
| ! | GTATCAAATGCAATTAAAGT+CGG | + | chr6_2:42454173-42454192 | Msa0917610:intron | 25.0% |
| ! | TTTGATTAGCAATTAGTGTA+GGG | - | chr6_2:42454208-42454227 | None:intergenic | 25.0% |
| !!! | TTTTGATTAGCAATTAGTGT+AGG | - | chr6_2:42454209-42454228 | None:intergenic | 25.0% |
| ! | AACTTTAGTGGTAAAATTTG+GGG | - | chr6_2:42454418-42454437 | None:intergenic | 25.0% |
| !! | AAATTAAATCCTCTTTTGGT+TGG | + | chr6_2:42454551-42454570 | Msa0917610:intron | 25.0% |
| ! | ATATTAAATCCAACCAAAAG+AGG | - | chr6_2:42454563-42454582 | None:intergenic | 25.0% |
| ! | TTTAGTGGAAGTAAGATTAT+TGG | + | chr6_2:42454800-42454819 | Msa0917610:CDS | 25.0% |
| !! | TTTTGATGCTATTCATTTAG+AGG | + | chr6_2:42454995-42455014 | Msa0917610:intron | 25.0% |
| !! | TCCATTTTGTTATGCCTATT+TGG | + | chr6_2:42452247-42452266 | Msa0917610:intron | 30.0% |
| !! | CCATTTTGTTATGCCTATTT+GGG | + | chr6_2:42452248-42452267 | Msa0917610:intron | 30.0% |
| TGATATGTGACATGTAACAT+GGG | - | chr6_2:42452359-42452378 | None:intergenic | 30.0% | |
| CTCTCACAAAAATTATGCAA+AGG | + | chr6_2:42452439-42452458 | Msa0917610:CDS | 30.0% | |
| GATGAGTAATAAAGACTTGT+TGG | - | chr6_2:42452557-42452576 | None:intergenic | 30.0% | |
| ATATACGTAGATTCTTCCTT+CGG | - | chr6_2:42452614-42452633 | None:intergenic | 30.0% | |
| TTGACCTTACTGTTATAACT+AGG | + | chr6_2:42452867-42452886 | Msa0917610:intron | 30.0% | |
| ATAAAGGATTTAGTACCTGA+AGG | - | chr6_2:42452954-42452973 | None:intergenic | 30.0% | |
| !! | CTTTTAGAGACAAGCTAAAA+TGG | - | chr6_2:42452991-42453010 | None:intergenic | 30.0% |
| !!! | CATTTTAGCTTGTCTCTAAA+AGG | + | chr6_2:42452989-42453008 | Msa0917610:intron | 30.0% |
| !! | TATGCTCGTTCAGTTTTATA+TGG | + | chr6_2:42453295-42453314 | Msa0917610:intron | 30.0% |
| !! | TCAGTTTTATATGGATGTCT+AGG | + | chr6_2:42453304-42453323 | Msa0917610:intron | 30.0% |
| !! | TCACTCATTGATTCTCTATT+CGG | + | chr6_2:42453377-42453396 | Msa0917610:intron | 30.0% |
| ! | GAGAACTAGAGAAGTATAAA+TGG | - | chr6_2:42453411-42453430 | None:intergenic | 30.0% |
| ! | TTGAATTTGTTTGATTGGTG+GGG | - | chr6_2:42453623-42453642 | None:intergenic | 30.0% |
| ! | CTTGAATTTGTTTGATTGGT+GGG | - | chr6_2:42453624-42453643 | None:intergenic | 30.0% |
| ! | ACTTGAATTTGTTTGATTGG+TGG | - | chr6_2:42453625-42453644 | None:intergenic | 30.0% |
| ! | CCAACTTGAATTTGTTTGAT+TGG | - | chr6_2:42453628-42453647 | None:intergenic | 30.0% |
| CCAATCAAACAAATTCAAGT+TGG | + | chr6_2:42453625-42453644 | Msa0917610:intron | 30.0% | |
| TAAGATATAATCTTCGACAG+AGG | + | chr6_2:42453670-42453689 | Msa0917610:intron | 30.0% | |
| ATAGAAGTTAGCAACAAGAA+TGG | + | chr6_2:42453772-42453791 | Msa0917610:intron | 30.0% | |
| ! | ACACTCTAGAAAAAGACTAA+TGG | - | chr6_2:42453860-42453879 | None:intergenic | 30.0% |
| ! | AGTGTTGTTGAATTGTAGTA+TGG | + | chr6_2:42453875-42453894 | Msa0917610:intron | 30.0% |
| ! | GTGTTGTTGAATTGTAGTAT+GGG | + | chr6_2:42453876-42453895 | Msa0917610:intron | 30.0% |
| GGGAAAAATGTTAAGGATTA+GGG | - | chr6_2:42454050-42454069 | None:intergenic | 30.0% | |
| AGGGAAAAATGTTAAGGATT+AGG | - | chr6_2:42454051-42454070 | None:intergenic | 30.0% | |
| TTTAGGAGGGAAAAATGTTA+AGG | - | chr6_2:42454057-42454076 | None:intergenic | 30.0% | |
| TCATTAGTACATGTTTAGGA+GGG | - | chr6_2:42454070-42454089 | None:intergenic | 30.0% | |
| TTGTTAGACTTTGAATCAAC+GGG | - | chr6_2:42454140-42454159 | None:intergenic | 30.0% | |
| TTGATTAGCAATTAGTGTAG+GGG | - | chr6_2:42454207-42454226 | None:intergenic | 30.0% | |
| !!! | GTACGAAGAACACTTTTTTA+AGG | - | chr6_2:42454301-42454320 | None:intergenic | 30.0% |
| ATCTTCCTATCACTCTATTT+CGG | - | chr6_2:42454373-42454392 | None:intergenic | 30.0% | |
| ATAGGAAGATATGCGTTTAA+AGG | + | chr6_2:42454383-42454402 | Msa0917610:intron | 30.0% | |
| ACTTTAGTGGTAAAATTTGG+GGG | - | chr6_2:42454417-42454436 | None:intergenic | 30.0% | |
| GAACGAACATATAACTTTAG+TGG | - | chr6_2:42454430-42454449 | None:intergenic | 30.0% | |
| TCATGCACATAATACGTTTA+CGG | - | chr6_2:42454531-42454550 | None:intergenic | 30.0% | |
| ! | TAATACACTGACTAACTTCT+AGG | + | chr6_2:42454629-42454648 | Msa0917610:intron | 30.0% |
| ! | TAAATATTTCTACGAGCTAC+CGG | + | chr6_2:42454683-42454702 | Msa0917610:intron | 30.0% |
| TGTTCAACAAATCAGTTAGT+CGG | + | chr6_2:42454751-42454770 | Msa0917610:intron | 30.0% | |
| TAGGAACTACCTAATACTTT+CGG | + | chr6_2:42455077-42455096 | Msa0917610:intron | 30.0% | |
| ACAGGAATGATATTGTCATA+AGG | - | chr6_2:42455149-42455168 | None:intergenic | 30.0% | |
| CCCAAATAGGCATAACAAAA+TGG | - | chr6_2:42452251-42452270 | None:intergenic | 35.0% | |
| GTGATATGTGACATGTAACA+TGG | - | chr6_2:42452360-42452379 | None:intergenic | 35.0% | |
| CAGACATTCACGATATAACT+TGG | - | chr6_2:42452393-42452412 | None:intergenic | 35.0% | |
| AGTTATATCGTGAATGTCTG+TGG | + | chr6_2:42452393-42452412 | Msa0917610:CDS | 35.0% | |
| ! | TTTTTGTGAGAGATACTAGC+AGG | - | chr6_2:42452431-42452450 | None:intergenic | 35.0% |
| ! | ATTAACCAGAGTTGATCACT+TGG | - | chr6_2:42452669-42452688 | None:intergenic | 35.0% |
| GCTTCCTAGTTATAACAGTA+AGG | - | chr6_2:42452874-42452893 | None:intergenic | 35.0% | |
| CTTTCAGAGACATGCTAAAA+TGG | - | chr6_2:42453030-42453049 | None:intergenic | 35.0% | |
| !! | CATTTTAGCATGTCTCTGAA+AGG | + | chr6_2:42453028-42453047 | Msa0917610:intron | 35.0% |
| GGAGTTTCTATCATGATTGT+AGG | - | chr6_2:42453103-42453122 | None:intergenic | 35.0% | |
| ! | TGCAACATGTGTCATTGAAA+TGG | + | chr6_2:42453173-42453192 | Msa0917610:intron | 35.0% |
| ! | TGTGTCATTGAAATGGAAGA+AGG | + | chr6_2:42453180-42453199 | Msa0917610:intron | 35.0% |
| ATGGAAGAAGGAATTATCCT+TGG | + | chr6_2:42453192-42453211 | Msa0917610:intron | 35.0% | |
| GAAAAATTTCCAGCAAACCA+AGG | - | chr6_2:42453212-42453231 | None:intergenic | 35.0% | |
| CAGCTTCTACATGATTAAAG+AGG | + | chr6_2:42453432-42453451 | Msa0917610:intron | 35.0% | |
| !! | CAAATTCAAGTTGGGGTATT+TGG | + | chr6_2:42453634-42453653 | Msa0917610:intron | 35.0% |
| TAGCAACAAGAATGGTTGAT+TGG | + | chr6_2:42453780-42453799 | Msa0917610:intron | 35.0% | |
| ! | AAGAATGGTTGATTGGTTGT+TGG | + | chr6_2:42453787-42453806 | Msa0917610:intron | 35.0% |
| TTAAGGATTAGGGCAAAGAA+GGG | - | chr6_2:42454040-42454059 | None:intergenic | 35.0% | |
| GTCATTAGTACATGTTTAGG+AGG | - | chr6_2:42454071-42454090 | None:intergenic | 35.0% | |
| GTGTGAAAATAGAGGTTGAA+CGG | - | chr6_2:42454108-42454127 | None:intergenic | 35.0% | |
| GTGATCAAGTGTGAAAATAG+AGG | - | chr6_2:42454116-42454135 | None:intergenic | 35.0% | |
| TCTCGGATAACACTTTCTAA+GGG | - | chr6_2:42454245-42454264 | None:intergenic | 35.0% | |
| ATCTCGGATAACACTTTCTA+AGG | - | chr6_2:42454246-42454265 | None:intergenic | 35.0% | |
| !! | ATTATTGGTTTCCAGTACCT+TGG | + | chr6_2:42454815-42454834 | Msa0917610:CDS | 35.0% |
| ! | TTTGAAATCTACTTCCACCA+AGG | - | chr6_2:42454835-42454854 | None:intergenic | 35.0% |
| TATCCAGATAGGAACTTCAA+AGG | - | chr6_2:42454939-42454958 | None:intergenic | 35.0% | |
| TTGAAGTTCCTATCTGGATA+TGG | + | chr6_2:42454939-42454958 | Msa0917610:intron | 35.0% | |
| !! | AGGAATTTGCCGAAAGTATT+AGG | - | chr6_2:42455089-42455108 | None:intergenic | 35.0% |
| AATCGTGATGTTTCACTCTA+AGG | - | chr6_2:42455109-42455128 | None:intergenic | 35.0% | |
| TCTGTATATTTGAGTCTCAC+AGG | - | chr6_2:42455167-42455186 | None:intergenic | 35.0% | |
| TATCGTGAATGTCTGTGGAA+AGG | + | chr6_2:42452398-42452417 | Msa0917610:CDS | 40.0% | |
| GAGAGATACTAGCAGGAAAT+CGG | - | chr6_2:42452424-42452443 | None:intergenic | 40.0% | |
| ! | CTGTTTGCTGAAGCAATCAA+AGG | + | chr6_2:42452693-42452712 | Msa0917610:intron | 40.0% |
| GGCATGTGTGAATTCGATAA+AGG | - | chr6_2:42452970-42452989 | None:intergenic | 40.0% | |
| ! | GGTACAGGCATTGCAAAATT+TGG | - | chr6_2:42453062-42453081 | None:intergenic | 40.0% |
| ATGCCTGTACCTAAGTAAAG+AGG | + | chr6_2:42453071-42453090 | Msa0917610:intron | 40.0% | |
| TTGCCTCTTTACTTAGGTAC+AGG | - | chr6_2:42453077-42453096 | None:intergenic | 40.0% | |
| AGGCATTTGCCTCTTTACTT+AGG | - | chr6_2:42453083-42453102 | None:intergenic | 40.0% | |
| !! | ATCTAGTTTGCTAGTGCTAG+TGG | - | chr6_2:42453124-42453143 | None:intergenic | 40.0% |
| GCAGAACAAATTTAGTGCCT+TGG | + | chr6_2:42453148-42453167 | Msa0917610:intron | 40.0% | |
| !! | AGGAATTATCCTTGGTTTGC+TGG | + | chr6_2:42453200-42453219 | Msa0917610:intron | 40.0% |
| ! | GGATGTCTAGGATTATTTGC+AGG | + | chr6_2:42453316-42453335 | Msa0917610:intron | 40.0% |
| GATATAATCTTCGACAGAGG+TGG | + | chr6_2:42453673-42453692 | Msa0917610:intron | 40.0% | |
| TAGTTTCAACCTTAGGCAGA+TGG | - | chr6_2:42453815-42453834 | None:intergenic | 40.0% | |
| GTTAAGGATTAGGGCAAAGA+AGG | - | chr6_2:42454041-42454060 | None:intergenic | 40.0% | |
| GTTATCCGAGATAGAGTGAT+AGG | + | chr6_2:42454254-42454273 | Msa0917610:intron | 40.0% | |
| TTCCTCCTATCACTCTATCT+CGG | - | chr6_2:42454262-42454281 | None:intergenic | 40.0% | |
| GCTATCCGAAATAGAGTGAT+AGG | + | chr6_2:42454365-42454384 | Msa0917610:intron | 40.0% | |
| CACAGTGCATGTAGAAAATC+AGG | + | chr6_2:42454452-42454471 | Msa0917610:intron | 40.0% | |
| !! | CTGACTAACTTCTAGGATGT+CGG | + | chr6_2:42454636-42454655 | Msa0917610:intron | 40.0% |
| !! | GTACCTTTGAAGTTCCTATC+TGG | + | chr6_2:42454933-42454952 | Msa0917610:intron | 40.0% |
| CGAACATCACATTTGGTATG+GGG | - | chr6_2:42455193-42455212 | None:intergenic | 40.0% | |
| CCGAACATCACATTTGGTAT+GGG | - | chr6_2:42455194-42455213 | None:intergenic | 40.0% | |
| CCCATACCAAATGTGATGTT+CGG | + | chr6_2:42455191-42455210 | Msa0917610:CDS | 40.0% | |
| TCCGAACATCACATTTGGTA+TGG | - | chr6_2:42455195-42455214 | None:intergenic | 40.0% | |
| ! | CCTTTTCCGAACATCACATT+TGG | - | chr6_2:42455200-42455219 | None:intergenic | 40.0% |
| CCAAATGTGATGTTCGGAAA+AGG | + | chr6_2:42455197-42455216 | Msa0917610:CDS | 40.0% | |
| ATGTGATGTTCGGAAAAGGT+TGG | + | chr6_2:42455201-42455220 | Msa0917610:CDS | 40.0% | |
| TTGTTATGCCTATTTGGGCC+AGG | + | chr6_2:42452253-42452272 | Msa0917610:intron | 45.0% | |
| ACACATGCTTTCAGTCCCAA+TGG | - | chr6_2:42452743-42452762 | None:intergenic | 45.0% | |
| GAATAAGGATCCAGCAGTCA+AGG | + | chr6_2:42452924-42452943 | Msa0917610:intron | 45.0% | |
| ATGACACATGTTGCAAGCCA+AGG | - | chr6_2:42453168-42453187 | None:intergenic | 45.0% | |
| TGGTGGGGTTATGTTCTCTT+AGG | - | chr6_2:42453608-42453627 | None:intergenic | 45.0% | |
| ATAATCTTCGACAGAGGTGG+TGG | + | chr6_2:42453676-42453695 | Msa0917610:intron | 45.0% | |
| GGGCAAAGAAGGGTGAATTA+GGG | - | chr6_2:42454030-42454049 | None:intergenic | 45.0% | |
| AGGGCAAAGAAGGGTGAATT+AGG | - | chr6_2:42454031-42454050 | None:intergenic | 45.0% | |
| ATCCGAGATAGAGTGATAGG+AGG | + | chr6_2:42454257-42454276 | Msa0917610:intron | 45.0% | |
| ! | TCTAGCAAGTGTCATTGCTC+CGG | - | chr6_2:42454705-42454724 | None:intergenic | 45.0% |
| ! | GAGCAATGACACTTGCTAGA+TGG | + | chr6_2:42454705-42454724 | Msa0917610:intron | 45.0% |
| ! | TGACACTTGCTAGATGGTGA+TGG | + | chr6_2:42454711-42454730 | Msa0917610:intron | 45.0% |
| ! | GACACTTGCTAGATGGTGAT+GGG | + | chr6_2:42454712-42454731 | Msa0917610:intron | 45.0% |
| GTCCAACCATCTGTCAACAA+CGG | - | chr6_2:42454777-42454796 | None:intergenic | 45.0% | |
| AGATGGTTGGACGAGTTTAG+TGG | + | chr6_2:42454785-42454804 | Msa0917610:CDS | 45.0% | |
| ! | ATTGGTTTCCAGTACCTTGG+TGG | + | chr6_2:42454818-42454837 | Msa0917610:CDS | 45.0% |
| ATCTACTTCCACCAAGGTAC+TGG | - | chr6_2:42454829-42454848 | None:intergenic | 45.0% | |
| ACACTCATGGAATGATAGGG+TGG | - | chr6_2:42454896-42454915 | None:intergenic | 45.0% | |
| ACCCTATCATTCCATGAGTG+TGG | + | chr6_2:42454895-42454914 | Msa0917610:intron | 45.0% | |
| GCCACACTCATGGAATGATA+GGG | - | chr6_2:42454899-42454918 | None:intergenic | 45.0% | |
| TGCCACACTCATGGAATGAT+AGG | - | chr6_2:42454900-42454919 | None:intergenic | 45.0% | |
| TCGTCGATCCATATCCAGAT+AGG | - | chr6_2:42454950-42454969 | None:intergenic | 45.0% | |
| CACGATTACGTCATGTTGTG+CGG | + | chr6_2:42455122-42455141 | Msa0917610:CDS | 45.0% | |
| ! | ACGAGTTTTTGTGCTGCCAA+TGG | + | chr6_2:42455224-42455243 | Msa0917610:CDS | 45.0% |
| TTGTGCTGCCAATGGTATTG+AGG | + | chr6_2:42455232-42455251 | Msa0917610:CDS | 45.0% | |
| ! | TGTGCTGCCAATGGTATTGA+GGG | + | chr6_2:42455233-42455252 | Msa0917610:CDS | 45.0% |
| ATCTCAATAGTGTCCCTGCC+TGG | - | chr6_2:42452274-42452293 | None:intergenic | 50.0% | |
| GACTCAAAGACAGATGCCGA+AGG | + | chr6_2:42452595-42452614 | Msa0917610:intron | 50.0% | |
| TGGAGCCAAGTGATCAACTC+TGG | + | chr6_2:42452661-42452680 | Msa0917610:intron | 50.0% | |
| !! | GAGGTGGTGGTGGTTGATTA+TGG | + | chr6_2:42453689-42453708 | Msa0917610:intron | 50.0% |
| !! | TTGTTGGCTCCATCTGCCTA+AGG | + | chr6_2:42453803-42453822 | Msa0917610:intron | 50.0% |
| ACACGATGTTGCCACACTCA+TGG | - | chr6_2:42454909-42454928 | None:intergenic | 50.0% | |
| TGGATCGACGAAATCACCGA+AGG | + | chr6_2:42454959-42454978 | Msa0917610:CDS | 50.0% | |
| ! | TTTCAAGTGCAAGTGCGTCG+TGG | + | chr6_2:42455271-42455290 | Msa0917610:CDS | 50.0% |
| TATGCCTATTTGGGCCAGGC+AGG | + | chr6_2:42452257-42452276 | Msa0917610:intron | 55.0% | |
| ATGCCTATTTGGGCCAGGCA+GGG | + | chr6_2:42452258-42452277 | Msa0917610:intron | 55.0% | |
| ! | ATCTTCGACAGAGGTGGTGG+TGG | + | chr6_2:42453679-42453698 | Msa0917610:intron | 55.0% |
| AGTCGGCCGTTGTTGACAGA+TGG | + | chr6_2:42454768-42454787 | Msa0917610:intron | 55.0% | |
| GGCCGTTGTTGACAGATGGT+TGG | + | chr6_2:42454772-42454791 | Msa0917610:CDS | 55.0% | |
| ! | GCTGCCAATGGTATTGAGGG+CGG | + | chr6_2:42455236-42455255 | Msa0917610:CDS | 55.0% |
| GTCTCCGCCCTCAATACCAT+TGG | - | chr6_2:42455243-42455262 | None:intergenic | 55.0% | |
| TGTCCCTGCCTGGCCCAAAT+AGG | - | chr6_2:42452264-42452283 | None:intergenic | 60.0% | |
| ! | TGAAGGCACGCCTTGACTGC+TGG | - | chr6_2:42452937-42452956 | None:intergenic | 60.0% |
| AGCAGTCAAGGCGTGCCTTC+AGG | + | chr6_2:42452936-42452955 | Msa0917610:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 42452205 | 42455322 | 42452205 | ID=Msa0917610;Name=Msa0917610 |
| chr6_2 | mRNA | 42452205 | 42455322 | 42452205 | ID=Msa0917610-mRNA-1;Parent=Msa0917610;Name=Msa0917610-mRNA-1;_AED=0.36;_eAED=0.39;_QI=50|0|0|0.66|0.4|0.5|6|0|178 |
| chr6_2 | exon | 42452205 | 42452211 | 42452205 | ID=Msa0917610-mRNA-1:exon:6805;Parent=Msa0917610-mRNA-1 |
| chr6_2 | exon | 42452316 | 42452460 | 42452316 | ID=Msa0917610-mRNA-1:exon:6806;Parent=Msa0917610-mRNA-1 |
| chr6_2 | exon | 42454606 | 42454614 | 42454606 | ID=Msa0917610-mRNA-1:exon:6807;Parent=Msa0917610-mRNA-1 |
| chr6_2 | exon | 42454770 | 42454913 | 42454770 | ID=Msa0917610-mRNA-1:exon:6808;Parent=Msa0917610-mRNA-1 |
| chr6_2 | exon | 42454945 | 42454980 | 42454945 | ID=Msa0917610-mRNA-1:exon:6809;Parent=Msa0917610-mRNA-1 |
| chr6_2 | exon | 42455080 | 42455322 | 42455080 | ID=Msa0917610-mRNA-1:exon:6810;Parent=Msa0917610-mRNA-1 |
| chr6_2 | five_prime_UTR | 42452205 | 42452211 | 42452205 | ID=Msa0917610-mRNA-1:five_prime_utr;Parent=Msa0917610-mRNA-1 |
| chr6_2 | five_prime_UTR | 42452316 | 42452358 | 42452316 | ID=Msa0917610-mRNA-1:five_prime_utr;Parent=Msa0917610-mRNA-1 |
| chr6_2 | CDS | 42452359 | 42452460 | 42452359 | ID=Msa0917610-mRNA-1:cds;Parent=Msa0917610-mRNA-1 |
| chr6_2 | CDS | 42454606 | 42454614 | 42454606 | ID=Msa0917610-mRNA-1:cds;Parent=Msa0917610-mRNA-1 |
| chr6_2 | CDS | 42454770 | 42454913 | 42454770 | ID=Msa0917610-mRNA-1:cds;Parent=Msa0917610-mRNA-1 |
| chr6_2 | CDS | 42454945 | 42454980 | 42454945 | ID=Msa0917610-mRNA-1:cds;Parent=Msa0917610-mRNA-1 |
| chr6_2 | CDS | 42455080 | 42455322 | 42455080 | ID=Msa0917610-mRNA-1:cds;Parent=Msa0917610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
