AlfalfaGEDB | Msa0917610

M. sativa cultivar zhongmu-4 / Msa0917610

KEGG: -
GO: -
PFAM: PF02362.24

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0917610	XP_024637264.1	80.952	147	17	1	43	178	19	165	5.21e-81	247

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0917610	TF	B3

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0917610	MtrunA17_Chr5g0393501	26.012	173	108	3	25	177	69	241	9.29e-15	69.7

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Find 42 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGATGATATTGATATTAAG+AGG	0.448218	6_2:+42452333	Msa0917610:five_prime_UTR
AATCGTGATGTTTCACTCTA+AGG	0.341127	6_2:-42455106	None:intergenic
ACACGATGTTGCCACACTCA+TGG	0.518160	6_2:-42454906	None:intergenic
ACACTCATGGAATGATAGGG+TGG	0.656827	6_2:-42454893	None:intergenic
ACAGGAATGATATTGTCATA+AGG	0.528831	6_2:-42455146	None:intergenic
AGATGGTTGGACGAGTTTAG+TGG	0.470972	6_2:+42454785	Msa0917610:CDS
AGGAATTTGCCGAAAGTATT+AGG	0.246016	6_2:-42455086	None:intergenic
AGTCGGCCGTTGTTGACAGA+TGG	0.531450	6_2:+42454768	Msa0917610:intron
AGTTATATCGTGAATGTCTG+TGG	0.586194	6_2:+42452393	Msa0917610:CDS
ATCTACTTCCACCAAGGTAC+TGG	0.428620	6_2:-42454826	None:intergenic

Showing 1 to 10 of 42 entries

Previous1 2 3 4 5Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TGATATGTGACATGTAACAT+GGG	-	chr6_2:42452359-42452378	None:intergenic	30.0%
CTCTCACAAAAATTATGCAA+AGG	+	chr6_2:42452439-42452458	Msa0917610:CDS	30.0%
GATGAGTAATAAAGACTTGT+TGG	-	chr6_2:42452557-42452576	None:intergenic	30.0%
ATATACGTAGATTCTTCCTT+CGG	-	chr6_2:42452614-42452633	None:intergenic	30.0%
TTGACCTTACTGTTATAACT+AGG	+	chr6_2:42452867-42452886	Msa0917610:intron	30.0%
ATAAAGGATTTAGTACCTGA+AGG	-	chr6_2:42452954-42452973	None:intergenic	30.0%
CCAATCAAACAAATTCAAGT+TGG	+	chr6_2:42453625-42453644	Msa0917610:intron	30.0%
TAAGATATAATCTTCGACAG+AGG	+	chr6_2:42453670-42453689	Msa0917610:intron	30.0%
ATAGAAGTTAGCAACAAGAA+TGG	+	chr6_2:42453772-42453791	Msa0917610:intron	30.0%
GGGAAAAATGTTAAGGATTA+GGG	-	chr6_2:42454050-42454069	None:intergenic	30.0%

Showing 1 to 10 of 188 entries

Previous1 2 3 4 5…19Next

Chromosome	Type	Strat	End	Strand	Name
chr6_2	gene	42452205	42455322	42452205	ID=Msa0917610;Name=Msa0917610
chr6_2	mRNA	42452205	42455322	42452205	ID=Msa0917610-mRNA-1;Parent=Msa0917610;Name=Msa0917610-mRNA-1;_AED=0.36;_eAED=0.39;_QI=50\|0\|0\|0.66\|0.4\|0.5\|6\|0\|178
chr6_2	exon	42452205	42452211	42452205	ID=Msa0917610-mRNA-1:exon:6805;Parent=Msa0917610-mRNA-1
chr6_2	exon	42452316	42452460	42452316	ID=Msa0917610-mRNA-1:exon:6806;Parent=Msa0917610-mRNA-1
chr6_2	exon	42454606	42454614	42454606	ID=Msa0917610-mRNA-1:exon:6807;Parent=Msa0917610-mRNA-1
chr6_2	exon	42454770	42454913	42454770	ID=Msa0917610-mRNA-1:exon:6808;Parent=Msa0917610-mRNA-1
chr6_2	exon	42454945	42454980	42454945	ID=Msa0917610-mRNA-1:exon:6809;Parent=Msa0917610-mRNA-1
chr6_2	exon	42455080	42455322	42455080	ID=Msa0917610-mRNA-1:exon:6810;Parent=Msa0917610-mRNA-1
chr6_2	five_prime_UTR	42452205	42452211	42452205	ID=Msa0917610-mRNA-1:five_prime_utr;Parent=Msa0917610-mRNA-1
chr6_2	five_prime_UTR	42452316	42452358	42452316	ID=Msa0917610-mRNA-1:five_prime_utr;Parent=Msa0917610-mRNA-1
chr6_2	CDS	42452359	42452460	42452359	ID=Msa0917610-mRNA-1:cds;Parent=Msa0917610-mRNA-1
chr6_2	CDS	42454606	42454614	42454606	ID=Msa0917610-mRNA-1:cds;Parent=Msa0917610-mRNA-1
chr6_2	CDS	42454770	42454913	42454770	ID=Msa0917610-mRNA-1:cds;Parent=Msa0917610-mRNA-1
chr6_2	CDS	42454945	42454980	42454945	ID=Msa0917610-mRNA-1:cds;Parent=Msa0917610-mRNA-1
chr6_2	CDS	42455080	42455322	42455080	ID=Msa0917610-mRNA-1:cds;Parent=Msa0917610-mRNA-1

Gene Sequence

>Msa0917610

ATGTTACATGTCACATATCACTCTTTGATTTCCAAGTTATATCGTGAATGTCTGTGGAAAGGCCGATTTCCTGCTAGTATCTCTCACAAAAATTATGCAAAGCTTGCAGTTTCGGCCGTTGTTGACAGATGGTTGGACGAGTTTAGTGGAAGTAAGATTATTGGTTTCCAGTACCTTGGTGGAAGTAGATTTCAAATCTTTGTTTTTGCTCATAACGTTACTTCAGCTGATTATCCACCCTATCATTCCATGAGTTTCCTATCTGGATATGGATCGACGAAATCACCGAAGGAACTACCTAATACTTTCGGCAAATTCCTTAGAGTGAAACATCACGATTACGTCATGTTGTGCGGACCTTATGACAATATCATTCCTGTGAGACTCAAATATACAGACGACCCCATACCAAATGTGATGTTCGGAAAAGGTTGGACGAGTTTTTGTGCTGCCAATGGTATTGAGGGCGGAGACGTGTTGATTTTCAAGTGCAAGTGCGTCGTGGACAAAAAATATGTTATCGTATCCAAGCGT

Protein sequence

>Msa0917610

MLHVTYHSLISKLYRECLWKGRFPASISHKNYAKLAVSAVVDRWLDEFSGSKIIGFQYLGGSRFQIFVFAHNVTSADYPPYHSMSFLSGYGSTKSPKELPNTFGKFLRVKHHDYVMLCGPYDNIIPVRLKYTDDPIPNVMFGKGWTSFCAANGIEGGDVLIFKCKCVVDKKYVIVSKR