AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0919140

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0919140 MtrunA17_Chr6g0474671 84.615 247 29 2 1 246 1 239 1.39e-151 421
Msa0919140 MtrunA17_Chr1g0204351 50.607 247 111 7 5 245 1 242 2.66e-68 211
Msa0919140 MtrunA17_Chr1g0204361 38.562 153 86 2 78 223 19 170 8.70e-32 115
Msa0919140 MtrunA17_Chr6g0474681 39.181 171 99 2 75 240 3 173 1.93e-31 114
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0919140 AT4G25410.1 38.554 166 92 2 82 237 47 212 8.32e-34 122
Msa0919140 AT4G25400.1 40.449 178 85 4 72 239 19 185 1.20e-33 120
Msa0919140 AT5G51780.2 39.655 174 95 2 74 237 21 194 9.08e-32 115
Msa0919140 AT5G51780.1 39.766 171 93 2 77 237 1 171 1.40e-31 114
Msa0919140 AT5G51790.1 40.113 177 92 4 78 242 27 201 7.58e-31 114
Msa0919140 AT4G25400.2 42.500 160 71 4 72 221 19 167 1.08e-30 112
Msa0919140 AT5G51790.3 40.000 170 90 3 78 237 92 259 4.12e-30 113
Msa0919140 AT5G51790.4 41.558 154 78 3 78 221 27 178 3.99e-28 106
Msa0919140 AT5G51790.2 41.290 155 79 3 78 222 92 244 1.61e-27 106
Msa0919140 AT1G62975.1 30.964 197 110 4 65 237 63 257 6.82e-22 91.7
Msa0919140 AT1G62975.2 48.235 85 42 1 65 149 63 145 5.19e-20 86.3
Msa0919140 AT1G12540.1 29.614 233 133 7 37 239 18 249 1.84e-19 85.1

Find 36 sgRNAs with CRISPR-Local

Find 167 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAGAGTTACTAAAATTAT+TGG 0.157017 6_2:+50316586 Msa0919140:CDS
TCATAAAGTATTTCATTATT+TGG 0.174332 6_2:-50315424 None:intergenic
TTCTCAAAATTCCATTATTC+TGG 0.212014 6_2:-50316523 None:intergenic
TTAAATGTTCACCAGAATAA+TGG 0.283582 6_2:+50316512 Msa0919140:CDS
ACTAAAATTATTGGCTAAAG+AGG 0.322448 6_2:+50316595 Msa0919140:CDS
GGATCGGAGAGATGCATAAT+AGG 0.380341 6_2:-50315536 None:intergenic
TGTGGGGACTATTAGAAAAC+TGG 0.390874 6_2:-50315303 None:intergenic
AGTCAATCACATGTGATTGT+AGG 0.431382 6_2:-50318571 None:intergenic
ATCGAGAGATTGAGAAGAAA+AGG 0.432398 6_2:+50315497 Msa0919140:CDS
CAAAATAATATCAATAAACT+TGG 0.435192 6_2:+50316413 Msa0919140:CDS
AAATAATGAAATACTTTATG+AGG 0.459947 6_2:+50315426 Msa0919140:CDS
TAACTAGTTCATTGCTGCCT+TGG 0.465128 6_2:-50315279 None:intergenic
TCATTGCTGCCTTGGTGTAA+AGG 0.472102 6_2:-50315271 None:intergenic
CTCAAATTGATCTACAATGT+TGG 0.473658 6_2:-50318521 None:intergenic
AAAACTCGCCAATTCTAAGC+TGG 0.500520 6_2:+50316457 Msa0919140:CDS
GCTGAGAAAGAAAATTGTCT+TGG 0.505207 6_2:+50318543 Msa0919140:CDS
ATTTACAAGTGGCTTAAAAG+AGG 0.506030 6_2:+50316550 Msa0919140:CDS
GAAGAAAAGGAGGCAAGAAA+TGG 0.508097 6_2:+50315510 Msa0919140:CDS
ATACCTCACACATGACACTT+TGG 0.523655 6_2:-50316667 None:intergenic
GCTTCCTCTTGAGTTCATCA+AGG 0.524427 6_2:+50315561 Msa0919140:CDS
TTGAGAATTGAATTTACAAG+TGG 0.546189 6_2:+50316539 Msa0919140:CDS
CTAAAATTATTGGCTAAAGA+GGG 0.551865 6_2:+50316596 Msa0919140:CDS
ATAATTCAAATGAACAAATG+AGG 0.559487 6_2:+50315464 Msa0919140:CDS
CAAGTGGCTTAAAAGAGGAA+AGG 0.561553 6_2:+50316555 Msa0919140:CDS
TGCGTTACAACAGAAATCAA+TGG 0.564243 6_2:+50316635 Msa0919140:CDS
TATTATCAAGAATCAGATCC+TGG 0.569776 6_2:-50315345 None:intergenic
AATATCTGATCATATGAATG+AGG 0.577529 6_2:+50316367 Msa0919140:CDS
CATTTAAATTGCATGATGCA+TGG 0.579018 6_2:-50316496 None:intergenic
CTAACCTTGATGAACTCAAG+AGG 0.593616 6_2:-50315565 None:intergenic
GATGAACTCAAGAGGAAGCA+AGG 0.597305 6_2:-50315557 None:intergenic
ACTCAAGAGGAAGCAAGGAT+CGG 0.611742 6_2:-50315552 None:intergenic
GCCTTGGTGTAAAGGAAACA+TGG 0.615909 6_2:-50315263 None:intergenic
GAGAGATTGAGAAGAAAAGG+AGG 0.623369 6_2:+50315500 Msa0919140:CDS
ACACCAACACAAAATCTACC+AGG 0.638429 6_2:+50315327 Msa0919140:CDS
ACCATGTTTCCTTTACACCA+AGG 0.675993 6_2:+50315262 Msa0919140:CDS
GCTCCAAAGTGTCATGTGTG+AGG 0.704417 6_2:+50316664 Msa0919140:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTCTTTTGAAATTAAT+TGG + chr6_2:50315625-50315644 Msa0919140:intron 10.0%
!!! TTTTAATTGGAATTTTTATA+AGG - chr6_2:50315681-50315700 None:intergenic 10.0%
!! ATCAATACATATATATAAAT+AGG + chr6_2:50315709-50315728 Msa0919140:intron 10.0%
!! TTAAGTTAAAGAATAAAATT+AGG - chr6_2:50318083-50318102 None:intergenic 10.0%
!! TAATATTATGAAATACAAAA+AGG + chr6_2:50318210-50318229 Msa0919140:intron 10.0%
!!! TCATAAAGTATTTCATTATT+TGG - chr6_2:50315427-50315446 None:intergenic 15.0%
!! AAATAATGAAATACTTTATG+AGG + chr6_2:50315426-50315445 Msa0919140:CDS 15.0%
!!! TTGATTTATCATCTTTTAAT+TGG - chr6_2:50315694-50315713 None:intergenic 15.0%
!! AGCAAAAAGAAAATTAAAAT+TGG - chr6_2:50316068-50316087 None:intergenic 15.0%
!!! CTTTTTTTCATATACAAATT+TGG + chr6_2:50316129-50316148 Msa0919140:intron 15.0%
!!! TTTAGTTTATTTAAATTCGT+CGG + chr6_2:50316232-50316251 Msa0919140:intron 15.0%
!! CAAATTATTTCAAAAAAATC+TGG - chr6_2:50316320-50316339 None:intergenic 15.0%
!!! AATTTGCTTAAAATATTTAC+AGG + chr6_2:50316334-50316353 Msa0919140:intron 15.0%
!! ATTTGCTTAAAATATTTACA+GGG + chr6_2:50316335-50316354 Msa0919140:intron 15.0%
!! CAAAATAATATCAATAAACT+TGG + chr6_2:50316413-50316432 Msa0919140:CDS 15.0%
!! AAATGTAACTATAATTATTG+TGG + chr6_2:50317163-50317182 Msa0919140:intron 15.0%
!!! CAAAGAAAAATGTTTTTTAA+AGG + chr6_2:50317451-50317470 Msa0919140:intron 15.0%
!!! GTATTTTTTTATCATGTTAT+TGG + chr6_2:50317923-50317942 Msa0919140:intron 15.0%
!!! TAAGTAAACTTACTAAATTT+TGG - chr6_2:50318188-50318207 None:intergenic 15.0%
!! ATAATTCAAATGAACAAATG+AGG + chr6_2:50315464-50315483 Msa0919140:CDS 20.0%
!! TTTATATCACTTATTTCATC+CGG + chr6_2:50316106-50316125 Msa0919140:intron 20.0%
!! ATTTGTATATGAAAAAAAGC+CGG - chr6_2:50316128-50316147 None:intergenic 20.0%
!!! ATATACAAATTTGGTTCAAT+CGG + chr6_2:50316138-50316157 Msa0919140:intron 20.0%
!! TAGTTAATATGAACGTTATT+TGG - chr6_2:50316284-50316303 None:intergenic 20.0%
!! TTCAGAGTTACTAAAATTAT+TGG + chr6_2:50316586-50316605 Msa0919140:CDS 20.0%
!! TATGATCAAACGAAATAAAA+TGG + chr6_2:50316856-50316875 Msa0919140:intron 20.0%
!!! TTATTGGTTTAAATCATTGT+TGG + chr6_2:50317267-50317286 Msa0919140:intron 20.0%
!! ATCATTGATGTAATATATGT+TGG - chr6_2:50317492-50317511 None:intergenic 20.0%
!! AATAAAATATTAAAACACCC+AGG - chr6_2:50317885-50317904 None:intergenic 20.0%
!!! TTATTTTTTTGAATGTCTGA+AGG + chr6_2:50317900-50317919 Msa0919140:intron 20.0%
!!! TATTTTTTTGAATGTCTGAA+GGG + chr6_2:50317901-50317920 Msa0919140:intron 20.0%
!! GGAATTTTTATAAGGAGATT+AGG - chr6_2:50315673-50315692 None:intergenic 25.0%
! CAAATCATATATATCTCATC+TGG - chr6_2:50315759-50315778 None:intergenic 25.0%
!! CTTCTCTCTAATATATTTTG+TGG + chr6_2:50315809-50315828 Msa0919140:intron 25.0%
!! TACCAGTTAATTGGTTTAAT+CGG - chr6_2:50316192-50316211 None:intergenic 25.0%
! TGAACGTTATTTGGATTAAT+GGG - chr6_2:50316275-50316294 None:intergenic 25.0%
! ATGAACGTTATTTGGATTAA+TGG - chr6_2:50316276-50316295 None:intergenic 25.0%
! AATATCTGATCATATGAATG+AGG + chr6_2:50316367-50316386 Msa0919140:CDS 25.0%
!! ATTATTTTCCAGCTTAGAAT+TGG - chr6_2:50316468-50316487 None:intergenic 25.0%
! TTAAATGTTCACCAGAATAA+TGG + chr6_2:50316512-50316531 Msa0919140:CDS 25.0%
! TTCTCAAAATTCCATTATTC+TGG - chr6_2:50316526-50316545 None:intergenic 25.0%
! TTGAGAATTGAATTTACAAG+TGG + chr6_2:50316539-50316558 Msa0919140:CDS 25.0%
!! ACTAAAATTATTGGCTAAAG+AGG + chr6_2:50316595-50316614 Msa0919140:CDS 25.0%
!! CTAAAATTATTGGCTAAAGA+GGG + chr6_2:50316596-50316615 Msa0919140:CDS 25.0%
! AAACATTGTAGCAAAATTCA+TGG + chr6_2:50316712-50316731 Msa0919140:intron 25.0%
! TGTGTTTACATTGTCAAAAT+CGG + chr6_2:50316744-50316763 Msa0919140:intron 25.0%
! TAAAATCGAAAACGAAATCA+AGG + chr6_2:50316810-50316829 Msa0919140:intron 25.0%
!!! CTATTGATTTAGATCAAAGA+GGG + chr6_2:50317047-50317066 Msa0919140:intron 25.0%
! GTACTTATATTCTGTGATAT+AGG + chr6_2:50317135-50317154 Msa0919140:intron 25.0%
! TCTAATACTCATTCTCTTAT+TGG + chr6_2:50317251-50317270 Msa0919140:intron 25.0%
!! TATGTTCAATTTTCAAAGTG+TGG - chr6_2:50317294-50317313 None:intergenic 25.0%
! AAAATTGAACATACACAAAG+TGG + chr6_2:50317301-50317320 Msa0919140:intron 25.0%
! CTTTATGTACTTCTTTCATA+AGG + chr6_2:50317411-50317430 Msa0919140:intron 25.0%
!!! TGTTTTTTAAAGGAGAGTTA+AGG + chr6_2:50317461-50317480 Msa0919140:intron 25.0%
!!! AATAAGTTGATTGCATTCAT+TGG - chr6_2:50317629-50317648 None:intergenic 25.0%
! ATGAATGCAATCAACTTATT+AGG + chr6_2:50317629-50317648 Msa0919140:intron 25.0%
! TGAATGCAATCAACTTATTA+GGG + chr6_2:50317630-50317649 Msa0919140:intron 25.0%
!! TAGCAATTACTTGATCATTT+TGG - chr6_2:50318122-50318141 None:intergenic 25.0%
! AGTAATTGCTATCCAAATTA+AGG + chr6_2:50318131-50318150 Msa0919140:intron 25.0%
!!! TAAATTTTGGTTAAGAGGAA+GGG - chr6_2:50318175-50318194 None:intergenic 25.0%
!!! CTTACTAAATTTTGGTTAAG+AGG - chr6_2:50318180-50318199 None:intergenic 25.0%
! AGGTCTATTAAATTCTTCTA+AGG + chr6_2:50318230-50318249 Msa0919140:intron 25.0%
! GGTCTATTAAATTCTTCTAA+GGG + chr6_2:50318231-50318250 Msa0919140:intron 25.0%
! ACATTACATTTAATGAGTCA+TGG + chr6_2:50318362-50318381 Msa0919140:intron 25.0%
TATTATCAAGAATCAGATCC+TGG - chr6_2:50315348-50315367 None:intergenic 30.0%
! AGAGTTGCTTTCTATTCATT+TGG - chr6_2:50315974-50315993 None:intergenic 30.0%
ATCCGATTAAACCAATTAAC+TGG + chr6_2:50316187-50316206 Msa0919140:intron 30.0%
!!! TTTTTTGAGTTCATCTCTCT+TGG - chr6_2:50316441-50316460 None:intergenic 30.0%
CATTTAAATTGCATGATGCA+TGG - chr6_2:50316499-50316518 None:intergenic 30.0%
ATTTACAAGTGGCTTAAAAG+AGG + chr6_2:50316550-50316569 Msa0919140:CDS 30.0%
GTGTTTACATTGTCAAAATC+GGG + chr6_2:50316745-50316764 Msa0919140:intron 30.0%
AATGGAAATGATTGAAATCG+AGG + chr6_2:50316918-50316937 Msa0919140:intron 30.0%
!! TTTCGGGTAATTTTTGATAC+AGG - chr6_2:50316954-50316973 None:intergenic 30.0%
! GGTTTTTACACGATTTTGAA+GGG - chr6_2:50316977-50316996 None:intergenic 30.0%
! AGGTTTTTACACGATTTTGA+AGG - chr6_2:50316978-50316997 None:intergenic 30.0%
CGAAAAAACATGCAAAATCA+TGG - chr6_2:50317021-50317040 None:intergenic 30.0%
!! GCTATTGATTTAGATCAAAG+AGG + chr6_2:50317046-50317065 Msa0919140:intron 30.0%
!!! GATCTCTATTTTGACAACAA+TGG + chr6_2:50317094-50317113 Msa0919140:intron 30.0%
TAACATTACTCAAGTCACAA+AGG - chr6_2:50317206-50317225 None:intergenic 30.0%
AAGAGAATGAGTATTAGAGA+GGG - chr6_2:50317249-50317268 None:intergenic 30.0%
TAAGAGAATGAGTATTAGAG+AGG - chr6_2:50317250-50317269 None:intergenic 30.0%
! ATTGAGATTCCTAACCTTTT+GGG - chr6_2:50317535-50317554 None:intergenic 30.0%
GAATGCAATCAACTTATTAG+GGG + chr6_2:50317631-50317650 Msa0919140:intron 30.0%
AAAATATTAAAACACCCAGG+AGG - chr6_2:50317882-50317901 None:intergenic 30.0%
! GATTAGTCACTACTAAAATG+TGG - chr6_2:50317962-50317981 None:intergenic 30.0%
! ATATCCAACATGTTGTTTGA+CGG - chr6_2:50317986-50318005 None:intergenic 30.0%
AACAACATGTTGGATATGTA+AGG + chr6_2:50317989-50318008 Msa0919140:intron 30.0%
!!! CTAAATTTTGGTTAAGAGGA+AGG - chr6_2:50318176-50318195 None:intergenic 30.0%
CAAAGGATGAGTTAAATCAT+AGG - chr6_2:50318398-50318417 None:intergenic 30.0%
CTCAAATTGATCTACAATGT+TGG - chr6_2:50318524-50318543 None:intergenic 30.0%
!! ATTTTGTGTTGGTGTTTGTG+GGG - chr6_2:50315322-50315341 None:intergenic 35.0%
!! GATTTTGTGTTGGTGTTTGT+GGG - chr6_2:50315323-50315342 None:intergenic 35.0%
!! AGATTTTGTGTTGGTGTTTG+TGG - chr6_2:50315324-50315343 None:intergenic 35.0%
ATCGAGAGATTGAGAAGAAA+AGG + chr6_2:50315497-50315516 Msa0919140:CDS 35.0%
TGGTACCTACTTCACTATAT+AGG + chr6_2:50315645-50315664 Msa0919140:intron 35.0%
AGGATCCTATATAGTGAAGT+AGG - chr6_2:50315653-50315672 None:intergenic 35.0%
!!! ATCGGAAACTGTTACTTTTC+TGG + chr6_2:50316156-50316175 Msa0919140:intron 35.0%
AATTAACTGGTACGTTCGTT+CGG + chr6_2:50316200-50316219 Msa0919140:intron 35.0%
TGCGTTACAACAGAAATCAA+TGG + chr6_2:50316635-50316654 Msa0919140:CDS 35.0%
AAGATGTCGATGACATATGA+TGG + chr6_2:50316889-50316908 Msa0919140:intron 35.0%
! GACATATGATGGTAACGAAA+TGG + chr6_2:50316900-50316919 Msa0919140:intron 35.0%
!! TACACGATTTTGAAGGGTTT+CGG - chr6_2:50316971-50316990 None:intergenic 35.0%
ATTGAACATACACAAAGTGG+TGG + chr6_2:50317304-50317323 Msa0919140:intron 35.0%
TTGAACATACACAAAGTGGT+GGG + chr6_2:50317305-50317324 Msa0919140:intron 35.0%
AAGTACATAAAGTCAAGTCG+AGG - chr6_2:50317403-50317422 None:intergenic 35.0%
! TGATTTGCAAAGATCCCAAA+AGG + chr6_2:50317518-50317537 Msa0919140:intron 35.0%
! GATTGAGATTCCTAACCTTT+TGG - chr6_2:50317536-50317555 None:intergenic 35.0%
GTTGATTGCATTCATTGGTA+GGG - chr6_2:50317624-50317643 None:intergenic 35.0%
AGTTGATTGCATTCATTGGT+AGG - chr6_2:50317625-50317644 None:intergenic 35.0%
TAGTCACTACTAAAATGTGG+CGG - chr6_2:50317959-50317978 None:intergenic 35.0%
AACATGTTGGATATGTAAGG+TGG + chr6_2:50317992-50318011 Msa0919140:intron 35.0%
ACATGTTGGATATGTAAGGT+GGG + chr6_2:50317993-50318012 Msa0919140:intron 35.0%
TCCAGAAAATATGGTTGGAT+GGG - chr6_2:50318024-50318043 None:intergenic 35.0%
ATCCAGAAAATATGGTTGGA+TGG - chr6_2:50318025-50318044 None:intergenic 35.0%
! TCCAACCATATTTTCTGGAT+AGG + chr6_2:50318025-50318044 Msa0919140:intron 35.0%
TGTTGCCTATCCAGAAAATA+TGG - chr6_2:50318033-50318052 None:intergenic 35.0%
AACCAGAGTTTATGGAATGA+GGG - chr6_2:50318276-50318295 None:intergenic 35.0%
TAACCAGAGTTTATGGAATG+AGG - chr6_2:50318277-50318296 None:intergenic 35.0%
GCATGTATAACCAGAGTTTA+TGG - chr6_2:50318284-50318303 None:intergenic 35.0%
ACAAGACTTGTAAGTCTCAA+AGG - chr6_2:50318415-50318434 None:intergenic 35.0%
GCTGAGAAAGAAAATTGTCT+TGG + chr6_2:50318543-50318562 Msa0919140:CDS 35.0%
ACCATGTTTCCTTTACACCA+AGG + chr6_2:50315262-50315281 Msa0919140:CDS 40.0%
TAACTAGTTCATTGCTGCCT+TGG - chr6_2:50315282-50315301 None:intergenic 40.0%
TGTGGGGACTATTAGAAAAC+TGG - chr6_2:50315306-50315325 None:intergenic 40.0%
ACACCAACACAAAATCTACC+AGG + chr6_2:50315327-50315346 Msa0919140:CDS 40.0%
! GATCCTGGTAGATTTTGTGT+TGG - chr6_2:50315333-50315352 None:intergenic 40.0%
GAGAGATTGAGAAGAAAAGG+AGG + chr6_2:50315500-50315519 Msa0919140:CDS 40.0%
GAAGAAAAGGAGGCAAGAAA+TGG + chr6_2:50315510-50315529 Msa0919140:CDS 40.0%
CTAACCTTGATGAACTCAAG+AGG - chr6_2:50315568-50315587 None:intergenic 40.0%
GAACGAACGTACCAGTTAAT+TGG - chr6_2:50316201-50316220 None:intergenic 40.0%
AAAACTCGCCAATTCTAAGC+TGG + chr6_2:50316457-50316476 Msa0919140:CDS 40.0%
CAAGTGGCTTAAAAGAGGAA+AGG + chr6_2:50316555-50316574 Msa0919140:CDS 40.0%
ATACCTCACACATGACACTT+TGG - chr6_2:50316670-50316689 None:intergenic 40.0%
!! ACACGATTTTGAAGGGTTTC+GGG - chr6_2:50316970-50316989 None:intergenic 40.0%
GCAAAATCATGGTATGATCG+CGG - chr6_2:50317010-50317029 None:intergenic 40.0%
TGCAAAGATCCCAAAAGGTT+AGG + chr6_2:50317523-50317542 Msa0919140:intron 40.0%
AGGAGGGACGAATGAAATTT+GGG - chr6_2:50317571-50317590 None:intergenic 40.0%
AATTCAGCTAATCTCGTGAG+AGG + chr6_2:50317832-50317851 Msa0919140:intron 40.0%
ATTAAAACACCCAGGAGGTT+AGG - chr6_2:50317877-50317896 None:intergenic 40.0%
ATCACCGTCAAACAACATGT+TGG + chr6_2:50317979-50317998 Msa0919140:intron 40.0%
! ACCCATCCAACCATATTTTC+TGG + chr6_2:50318020-50318039 Msa0919140:intron 40.0%
GCCTATCCAGAAAATATGGT+TGG - chr6_2:50318029-50318048 None:intergenic 40.0%
GTTAAGAGGAAGGGATGTAT+AGG - chr6_2:50318166-50318185 None:intergenic 40.0%
!!! TCTTTGTTTTCACCATGCAC+AGG + chr6_2:50318489-50318508 Msa0919140:intron 40.0%
! GCCTTGGTGTAAAGGAAACA+TGG - chr6_2:50315266-50315285 None:intergenic 45.0%
! TCATTGCTGCCTTGGTGTAA+AGG - chr6_2:50315274-50315293 None:intergenic 45.0%
GGATCGGAGAGATGCATAAT+AGG - chr6_2:50315539-50315558 None:intergenic 45.0%
ACTCAAGAGGAAGCAAGGAT+CGG - chr6_2:50315555-50315574 None:intergenic 45.0%
GATGAACTCAAGAGGAAGCA+AGG - chr6_2:50315560-50315579 None:intergenic 45.0%
GCTTCCTCTTGAGTTCATCA+AGG + chr6_2:50315561-50315580 Msa0919140:CDS 45.0%
TATGATCGCGGCAAAATCGT+AGG - chr6_2:50316998-50317017 None:intergenic 45.0%
CAGGAGGGACGAATGAAATT+TGG - chr6_2:50317572-50317591 None:intergenic 45.0%
CAATCCGAATTCGATCAGGA+GGG - chr6_2:50317587-50317606 None:intergenic 45.0%
ACAATCCGAATTCGATCAGG+AGG - chr6_2:50317588-50317607 None:intergenic 45.0%
CCTACAATCCGAATTCGATC+AGG - chr6_2:50317591-50317610 None:intergenic 45.0%
CCTGATCGAATTCGGATTGT+AGG + chr6_2:50317588-50317607 Msa0919140:intron 45.0%
CGTCGTTTGATTGAGCTCAA+AGG - chr6_2:50317760-50317779 None:intergenic 45.0%
TACCGTAAAACCTAACCTCC+TGG + chr6_2:50317864-50317883 Msa0919140:intron 45.0%
ACCGTAAAACCTAACCTCCT+GGG + chr6_2:50317865-50317884 Msa0919140:intron 45.0%
! ACCCAGGAGGTTAGGTTTTA+CGG - chr6_2:50317869-50317888 None:intergenic 45.0%
AGGAGTCGGACACCTTAATT+TGG - chr6_2:50318146-50318165 None:intergenic 45.0%
AGGAAGGGATGTATAGGAGT+CGG - chr6_2:50318160-50318179 None:intergenic 45.0%
TGGAATTGTTCACCTGTGCA+TGG - chr6_2:50318504-50318523 None:intergenic 45.0%
! GCTCCAAAGTGTCATGTGTG+AGG + chr6_2:50316664-50316683 Msa0919140:CDS 50.0%
TCGTCCCTCCTGATCGAATT+CGG + chr6_2:50317580-50317599 Msa0919140:intron 50.0%
TGAGGGCGACTCAACACATT+AGG - chr6_2:50318259-50318278 None:intergenic 50.0%
CGCCCTCATTCCATAAACTC+TGG + chr6_2:50318271-50318290 Msa0919140:intron 50.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 50315253 50318591 50315253 ID=Msa0919140;Name=Msa0919140
chr6_2 mRNA 50315253 50318591 50315253 ID=Msa0919140-mRNA-1;Parent=Msa0919140;Name=Msa0919140-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|3|0|246
chr6_2 exon 50315253 50315582 50315253 ID=Msa0919140-mRNA-1:exon:7529;Parent=Msa0919140-mRNA-1
chr6_2 exon 50316356 50316685 50316356 ID=Msa0919140-mRNA-1:exon:7530;Parent=Msa0919140-mRNA-1
chr6_2 exon 50318511 50318591 50318511 ID=Msa0919140-mRNA-1:exon:7531;Parent=Msa0919140-mRNA-1
chr6_2 CDS 50315253 50315582 50315253 ID=Msa0919140-mRNA-1:cds;Parent=Msa0919140-mRNA-1
chr6_2 CDS 50316356 50316685 50316356 ID=Msa0919140-mRNA-1:cds;Parent=Msa0919140-mRNA-1
chr6_2 CDS 50318511 50318591 50318511 ID=Msa0919140-mRNA-1:cds;Parent=Msa0919140-mRNA-1
Gene Sequence

>Msa0919140

ATGGAGCATACCATGTTTCCTTTACACCAAGGCAGCAATGAACTAGTTATCCAGTTTTCTAATAGTCCCCACAAACACCAACACAAAATCTACCAGGATCTGATTCTTGATAATAATTATTCTTCTTTGCTTGTCAATGATTCTAATAAAATATTCAGTTTTAGTTGTCAGCCAAATAATGAAATACTTTATGAGGCTGCTAAGAATCATGATAATTCAAATGAACAAATGAGGAAAATGATTCATCGAGAGATTGAGAAGAAAAGGAGGCAAGAAATGGCTACCTATTATGCATCTCTCCGATCCTTGCTTCCTCTTGAGTTCATCAAGGGAAAGCGATCAATATCTGATCATATGAATGAGGCAGTGAATTACATAAAACACATGCAAAATAATATCAATAAACTTGGTGCCAAGAGAGATGAACTCAAAAAACTCGCCAATTCTAAGCTGGAAAATAATGAGAGCAACCATGCATCATGCAATTTAAATGTTCACCAGAATAATGGAATTTTGAGAATTGAATTTACAAGTGGCTTAAAAGAGGAAAGGCTCAAACTTTCAGAGTTACTAAAATTATTGGCTAAAGAGGGACTTGAAGTTGATAGTTGCGTTACAACAGAAATCAATGGTAGATTGCTCCAAAGTGTCATGTGTGAGGTGAACAATTCCAACATTGTAGATCAATTTGAGCTGAGAAAGAAAATTGTCTTGGTAATTCCTACAATCACATGTGATTGA
Protein sequence

>Msa0919140

MEHTMFPLHQGSNELVIQFSNSPHKHQHKIYQDLILDNNYSSLLVNDSNKIFSFSCQPNNEILYEAAKNHDNSNEQMRKMIHREIEKKRRQEMATYYASLRSLLPLEFIKGKRSISDHMNEAVNYIKHMQNNINKLGAKRDELKKLANSKLENNESNHASCNLNVHQNNGILRIEFTSGLKEERLKLSELLKLLAKEGLEVDSCVTTEINGRLLQSVMCEVNNSNIVDQFELRKKIVLVIPTITCD*