AlfalfaGEDB | Msa0919150

M. sativa cultivar zhongmu-4 / Msa0919150

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0919150	XP_013443559.1	92.006	688	36	4	1	671	1	686	0.0	1113

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0919150	sp\|O64639\|Y2559_ARATH	43.923	724	266	23	24	670	23	683	4.24e-153	462

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0919150	MtrunA17_Chr6g0474661	92.006	688	36	4	1	671	1	686	0.0	1113
Msa0919150	MtrunA17_Chr8g0351221	45.582	713	264	23	27	670	28	685	2.92e-169	501
Msa0919150	MtrunA17_Chr1g0204331	46.983	696	208	22	14	668	2	577	1.05e-161	478
Msa0919150	MtrunA17_Chr2g0333961	37.245	392	169	17	326	672	365	724	1.04e-50	188
Msa0919150	MtrunA17_Chr2g0333961	34.694	245	101	9	28	247	20	230	6.58e-28	120
Msa0919150	MtrunA17_Chr1g0158771	33.061	245	106	9	28	247	230	441	8.06e-25	109
Msa0919150	MtrunA17_Chr7g0239371	30.488	246	120	6	19	244	274	488	4.11e-23	104
Msa0919150	MtrunA17_Chr7g0239371	31.250	160	95	3	490	648	472	617	9.44e-15	78.2
Msa0919150	MtrunA17_Chr7g0239381	30.159	252	125	7	13	244	272	492	1.50e-22	102
Msa0919150	MtrunA17_Chr7g0239381	30.000	160	97	3	490	648	476	621	1.38e-14	77.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0919150	AT2G45590.1	43.923	724	266	23	24	670	23	683	4.31e-154	462
Msa0919150	AT5G51770.1	44.284	691	293	22	14	668	17	651	7.21e-144	435
Msa0919150	AT4G25390.1	42.672	696	286	20	16	667	25	651	9.03e-142	430
Msa0919150	AT1G80870.1	31.494	743	347	30	21	668	14	689	5.56e-75	256
Msa0919150	AT4G25390.2	36.382	503	226	16	16	476	25	475	4.58e-59	207
Msa0919150	AT2G43700.3	36.929	241	122	10	18	247	242	463	7.48e-26	113
Msa0919150	AT2G43700.3	31.452	124	80	2	525	647	469	588	3.45e-11	67.0
Msa0919150	AT2G43700.5	36.929	241	122	10	18	247	242	463	7.48e-26	113
Msa0919150	AT2G43700.5	31.452	124	80	2	525	647	469	588	3.45e-11	67.0
Msa0919150	AT2G43700.2	36.929	241	122	10	18	247	242	463	7.48e-26	113

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Find 239 sgRNAs with CRISPR-Local

Find 325 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGGATAATGAGGTTGC+GGG	0.428088	6_2:-50336916	Msa0919150:CDS
AAACGGGAAGCTCATTGAGC+TGG	0.566826	6_2:-50336179	Msa0919150:CDS
AAACTCTGTCATCGGTGAAC+CGG	0.456773	6_2:+50336243	None:intergenic
AAAGACCGATTAATCTTCTG+AGG	0.636863	6_2:+50337754	None:intergenic
AAAGAGCTAATCTTCTGTCG+TGG	0.550556	6_2:-50336219	Msa0919150:CDS
AAAGAGTTTACGGTGAAGCA+TGG	0.576025	6_2:+50338104	None:intergenic
AACTCCTTCTCCACTCCCCT+CGG	0.537497	6_2:-50337865	Msa0919150:CDS
AAGAGAAGAGAAAGTCGGTG+AGG	0.587335	6_2:-50336699	Msa0919150:CDS
AAGAGCTAATCTTCTGTCGT+GGG	0.586582	6_2:-50336218	Msa0919150:CDS
AAGTGATAAGAGTGAATTGG+AGG	0.558395	6_2:-50336824	Msa0919150:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTTGAGATTGAAAGAGTTTA+CGG	+	chr6_2:50334552-50334571	None:intergenic	30.0%
TTGTTCCTCAGAAGATTAAT+CGG	-	chr6_2:50334884-50334903	Msa0919150:intron	30.0%
CAATCCAACAAAACATTACT+AGG	+	chr6_2:50335358-50335377	None:intergenic	30.0%
TGTTGAGATGAGAATGAATA+TGG	-	chr6_2:50335606-50335625	Msa0919150:intron	30.0%
GAAAAGTGATAAGAGTGAAT+TGG	-	chr6_2:50335816-50335835	Msa0919150:intron	30.0%
AGAAGAAAAAGGATAAGAAG+AGG	-	chr6_2:50335860-50335879	Msa0919150:intron	30.0%
GAAGAGTAAGAAGAAGAAAA+AGG	-	chr6_2:50336014-50336033	Msa0919150:CDS	30.0%
GTATTAGCAATGGTGATAAT+TGG	-	chr6_2:50336058-50336077	Msa0919150:CDS	30.0%
GTCTATTCAGTCATTGAATA+AGG	-	chr6_2:50336494-50336513	Msa0919150:CDS	30.0%
ATGTAATTACCGACGAAAAT+GGG	+	chr6_2:50336737-50336756	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_2	gene	50334541	50338124	50334541	ID=Msa0919150;Name=Msa0919150
chr6_2	mRNA	50334541	50338124	50334541	ID=Msa0919150-mRNA-1;Parent=Msa0919150;Name=Msa0919150-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0\|0\|0\|0.66\|1\|1\|3\|0\|705
chr6_2	exon	50337576	50338124	50337576	ID=Msa0919150-mRNA-1:exon:7534;Parent=Msa0919150-mRNA-1
chr6_2	exon	50335963	50337427	50335963	ID=Msa0919150-mRNA-1:exon:7533;Parent=Msa0919150-mRNA-1
chr6_2	exon	50334541	50334644	50334541	ID=Msa0919150-mRNA-1:exon:7532;Parent=Msa0919150-mRNA-1
chr6_2	CDS	50337576	50338124	50337576	ID=Msa0919150-mRNA-1:cds;Parent=Msa0919150-mRNA-1
chr6_2	CDS	50335963	50337427	50335963	ID=Msa0919150-mRNA-1:cds;Parent=Msa0919150-mRNA-1
chr6_2	CDS	50334541	50334644	50334541	ID=Msa0919150-mRNA-1:cds;Parent=Msa0919150-mRNA-1

Gene Sequence

>Msa0919150

ATGCTTCACCGTAAACTCTTTCAATCTCAACCGTCCACTTCATCCTCACAACCACCACACCACCACCGTCACCACCACCACATCCTAATCCCTCTCCTCGCCGCAACCACCGTCGTCCTCACCCTCCTCCTCCTCTTCACTTTCCTCCACCGCCGCCGAAAAAAACACACCACCCCACTCACCTTCACCGACGACCCACCTCACCGTTTCACCTACTCCCATCTCCGCCGCGCCACCAACTCCTTCTCCACTCCCCTCGGCCACGGCGGCTTCGGTACCGTCTTTTCCGGAACACTCTCTTCAATACCCATAGCTGTTAAACTAATGGACACTGACAGTGAAATTGTTCCTCAGAAGATTAATCGGTCTTTGGGTCGGATACCGAGTTTTTATAAAAACAAAAACAAAAAGAAACTCATAGACTCTTCATTTCACCAAGGTGAACGTGAATTTCACAACGAGCTCTTCTTCGCTTCAAAGCTTCGTTCTATTTACACGATTCCACCGTTAGGGTTTTCATCTGACCCAAAACGACGTCGTTTTTTACTTCGAAAGTGTGTTGAGCTTTTGAATTGGAAGAAGAGATTTGAAATTGTGATGGATATTGCTAAGGGACTTTGTTATCTTCATTGTTTTGATCCTCCTGTTATACATGGTGATGTGAAACCTAGTAATGTTTTGTTGGATTGTGATTTTAATGCTAAGATTGGTGATTTTGGATTGGCGAGGTTGAAGTCGGAGCTGGTTAGGGTTGAGATTGAGGTTTTGGGTGTTGAGAGTGATGATGAGATGAAGAAAGGGAAGGGGGATGATGAATTGGAGGTTGTGATTGATGATTGTGGGTCGATGGAGAGTGGTCATACCGGTTTTTTTGAAGAGGGTGGTCATTTGGGAACTCCGGTGGCTTCGCCGGAAAGTGTTGAGATGAGAATGAATATGGCGATGGCTATGGCGGCGTCACCGGGGTTTGATAAGGTTAGTGAGAAGAGTGAGAAAGGGAAAGGGTTGACGAGTAATTCGGTTAGAGATTGGTGGTGGAAACAGGATAATGAGGTTGCGGGTTTGACGCCGGTTGGTGAAGGTAAGAAGGTGAAGGATTATGTGATGGATTGGATTGGGAGGGAAGCGAAAAGTGATAAGAGTGAATTGGAGGGTGGGAAAATTGGGAAGGAGAAGAAAAAGGATAAGAAGAGGAAGCAGAAATTGGAATGGTGGGAATCAATGGACGAGGATAATGTTGGCGGGGTGATGAGGAAAGAGAAGAGAAAGTCGGTGAGGGAATGGTGGAAGGAGGAGCATTGTGAAGAGATTGCAAAGGAGAAAAAGAAGAGTAAGAAGAAGAAAAAGGGTGTAGAAAATGGTGATGATGGTATTAGCAATGGTGATAATTGGTGGATGAGTGATGATGCATTATACGGGGACAGAAATAAGGGAAAGAGAAGAAGCGGGAATAATCGCAGTGGTAATATCGATTGGTGGTTAGATGGATTCAGTGGTGACCTATGGAGAGCACGCAGGAATAGTTTTGATTCAGCTAGTGGAGATATTCCAAAGAGTGGTGGTGTGAGTAGTACTCCAAGTATGAGAGGAACCGTTTGTTATGTTGCTCCTGAGTATGGCTATGGCGAAGATGTCACTGAAAAGTGTGACGTTTATAGCTTTGGGATCTTGTTGCTTGTTATCATATCTGGAAGACGCCCGCTTCAAGTGACCGGTTCACCGATGACAGAGTTTCAAAGAGCTAATCTTCTGTCGTGGGCACGCCATTGTGCCAGAAACGGGAAGCTCATTGAGCTGGTTGATGAGTCTATTCAGTCATTGAATAAGGACCAAGCTCTGATCTGCATCAAGGTAGCTTTGCATTGTTTGCTTAAATCACCTACTCGGCGTCCTTCAATGAAGGAGGTTGTCGGGATGCTTAGTGGTGAACTGGAACCACCTCAGTTGCCTATTGAGTACTCGCCTTCAACACCTTCGCGCTTCCCTTTCAAATCGAGGAAGAAAGGCCAAGCCGACTTTCTTGCAATAACAATGTGGGAGGGTTGGTTCGTTATCTGGGTTCGCGAAAGCTATGCGAATCTGGAACGCTCTTCTGCTTTCTTCCCTTTGGCATTTTAG

Protein sequence

>Msa0919150

MLHRKLFQSQPSTSSSQPPHHHRHHHHILIPLLAATTVVLTLLLLFTFLHRRRKKHTTPLTFTDDPPHRFTYSHLRRATNSFSTPLGHGGFGTVFSGTLSSIPIAVKLMDTDSEIVPQKINRSLGRIPSFYKNKNKKKLIDSSFHQGEREFHNELFFASKLRSIYTIPPLGFSSDPKRRRFLLRKCVELLNWKKRFEIVMDIAKGLCYLHCFDPPVIHGDVKPSNVLLDCDFNAKIGDFGLARLKSELVRVEIEVLGVESDDEMKKGKGDDELEVVIDDCGSMESGHTGFFEEGGHLGTPVASPESVEMRMNMAMAMAASPGFDKVSEKSEKGKGLTSNSVRDWWWKQDNEVAGLTPVGEGKKVKDYVMDWIGREAKSDKSELEGGKIGKEKKKDKKRKQKLEWWESMDEDNVGGVMRKEKRKSVREWWKEEHCEEIAKEKKKSKKKKKGVENGDDGISNGDNWWMSDDALYGDRNKGKRRSGNNRSGNIDWWLDGFSGDLWRARRNSFDSASGDIPKSGGVSSTPSMRGTVCYVAPEYGYGEDVTEKCDVYSFGILLLVIISGRRPLQVTGSPMTEFQRANLLSWARHCARNGKLIELVDESIQSLNKDQALICIKVALHCLLKSPTRRPSMKEVVGMLSGELEPPQLPIEYSPSTPSRFPFKSRKKGQADFLAITMWEGWFVIWVRESYANLERSSAFFPLAF*