AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0919340

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0919340 MtrunA17_Chr6g0474901 90.566 53 5 0 1 53 736 788 8.04e-28 103
Msa0919340 MtrunA17_Chr6g0474831 90.196 51 5 0 1 51 226 276 1.65e-27 100
Msa0919340 MtrunA17_Chr6g0474991 90.196 51 5 0 1 51 33 83 2.74e-27 97.4
Msa0919340 MtrunA17_Chr6g0474851 88.235 51 6 0 1 51 98 148 2.30e-26 96.7
Msa0919340 MtrunA17_Chr6g0474811 90.196 51 5 0 1 51 743 793 7.33e-26 98.6
Msa0919340 MtrunA17_Chr6g0474871 90.196 51 5 0 1 51 735 785 1.00e-25 98.2
Msa0919340 MtrunA17_Chr6g0474861 90.196 51 5 0 1 51 456 506 1.01e-25 98.2
Msa0919340 MtrunA17_Chr6g0475131 82.353 51 9 0 1 51 179 229 2.46e-25 95.1
Msa0919340 MtrunA17_Chr6g0475091 88.235 51 6 0 1 51 751 801 3.76e-25 96.7
Msa0919340 MtrunA17_Chr6g0475201 82.353 51 9 0 1 51 744 794 7.72e-25 95.5
Msa0919340 MtrunA17_Chr6g0477601 81.250 48 9 0 7 54 1 48 8.17e-24 84.3
Msa0919340 MtrunA17_Chr6g0475111 78.431 51 10 1 1 51 757 806 2.05e-21 85.9
Msa0919340 MtrunA17_Chr1g0206321 66.667 51 17 0 1 51 1 51 1.74e-20 79.3
Msa0919340 MtrunA17_Chr8g0347571 74.510 51 12 1 1 51 740 789 9.23e-20 81.3
Msa0919340 MtrunA17_Chr1g0206261 62.745 51 19 0 1 51 258 308 2.86e-18 76.6
Msa0919340 MtrunA17_Chr1g0206331 68.627 51 15 1 1 51 505 554 1.07e-17 75.1
Msa0919340 MtrunA17_Chr2g0280761 62.264 53 19 1 1 53 1 52 1.64e-15 66.2
Msa0919340 MtrunA17_Chr6g0475181 82.353 34 6 0 1 34 1 34 3.64e-15 64.7
Msa0919340 MtrunA17_Chr8g0357651 64.151 53 18 1 1 53 640 691 6.17e-15 67.4
Msa0919340 MtrunA17_Chr2g0280831 62.264 53 18 1 1 53 265 315 8.04e-15 67.0
Msa0919340 MtrunA17_Chr2g0280791 62.264 53 18 1 1 53 691 741 8.44e-15 67.0
Msa0919340 MtrunA17_Chr4g0048801 60.377 53 20 1 1 53 688 739 8.53e-15 67.0
Msa0919340 MtrunA17_Chr2g0280801 62.264 53 18 1 1 53 697 747 9.59e-15 67.0
Msa0919340 MtrunA17_Chr1g0206351 60.377 53 20 1 1 53 523 574 1.05e-14 66.6
Msa0919340 MtrunA17_Chr2g0280681 60.377 53 20 1 1 53 671 722 1.10e-14 66.6
Msa0919340 MtrunA17_Chr7g0236531 59.615 52 20 1 1 52 208 258 1.59e-14 66.2
Msa0919340 MtrunA17_Chr3g0119041 56.863 51 21 1 1 51 510 559 1.98e-14 65.9
Msa0919340 MtrunA17_Chr4g0048661 58.491 53 21 1 1 53 207 258 2.83e-14 65.5
Msa0919340 MtrunA17_Chr4g0048741 58.491 53 21 1 1 53 702 753 2.89e-14 65.5
Msa0919340 MtrunA17_Chr7g0236691 58.824 51 20 1 1 51 670 719 3.03e-14 65.5
Msa0919340 MtrunA17_Chr2g0280781 62.264 53 19 1 1 53 680 731 3.44e-14 65.5
Msa0919340 MtrunA17_Chr4g0048791 58.491 53 21 1 1 53 702 753 3.69e-14 65.1
Msa0919340 MtrunA17_Chr8g0357691 62.264 53 19 1 1 53 648 699 4.06e-14 65.1
Msa0919340 MtrunA17_Chr1g0205771 60.784 51 19 1 1 51 513 562 4.58e-14 65.1
Msa0919340 MtrunA17_Chr8g0357831 62.264 53 19 1 1 53 362 413 5.18e-14 64.7
Msa0919340 MtrunA17_Chr7g0236471 58.824 51 20 1 1 51 510 559 5.35e-14 64.7
Msa0919340 MtrunA17_Chr4g0048681 58.491 53 21 1 1 53 450 501 5.76e-14 64.7
Msa0919340 MtrunA17_Chr7g0236551 59.615 52 20 1 1 52 658 708 6.68e-14 64.7
Msa0919340 MtrunA17_Chr1g0206361 56.863 51 21 1 1 51 513 562 6.77e-14 64.3
Msa0919340 MtrunA17_Chr8g0358141 58.491 53 21 1 1 53 248 299 8.91e-14 63.9
Msa0919340 MtrunA17_Chr7g0236641 60.784 51 19 1 1 51 695 744 1.43e-13 63.5
Msa0919340 MtrunA17_Chr4g0048731 56.604 53 22 1 1 53 216 267 1.65e-13 63.2
Msa0919340 MtrunA17_Chr5g0394001 56.604 53 22 1 1 53 500 551 1.69e-13 63.5
Msa0919340 MtrunA17_Chr8g0354351 58.491 53 21 1 1 53 503 554 1.76e-13 63.2
Msa0919340 MtrunA17_Chr4g0055011 58.824 51 20 1 1 51 241 290 1.83e-13 63.2
Msa0919340 MtrunA17_Chr3g0084631 56.604 53 22 1 1 53 33 84 2.92e-13 60.8
Msa0919340 MtrunA17_Chr4g0048711 55.769 52 22 1 1 52 256 306 2.99e-13 62.4
Msa0919340 MtrunA17_Chr4g0048711 54.717 53 23 1 1 53 99 150 5.19e-13 62.0
Msa0919340 MtrunA17_Chr3g0084691 58.491 53 21 1 1 53 692 743 3.31e-13 62.4
Msa0919340 MtrunA17_Chr8g0357631 60.377 53 20 1 1 53 638 689 3.34e-13 62.4
Msa0919340 MtrunA17_Chr2g0323231 56.604 53 22 1 1 53 348 399 4.44e-13 62.0
Msa0919340 MtrunA17_Chr4g0048641 54.717 53 23 1 1 53 628 679 4.75e-13 62.0
Msa0919340 MtrunA17_Chr4g0023111 54.717 53 23 1 1 53 884 935 5.07e-13 62.0
Msa0919340 MtrunA17_Chr7g0236561 56.863 51 21 1 1 51 675 724 5.67e-13 62.0
Msa0919340 MtrunA17_Chr8g0340091 56.604 53 22 1 1 53 702 753 5.96e-13 62.0
Msa0919340 MtrunA17_Chr4g0042351 52.830 53 24 1 1 53 623 674 6.74e-13 61.6
Msa0919340 MtrunA17_Chr8g0340111 56.604 53 22 1 1 53 675 726 9.89e-13 61.2
Msa0919340 MtrunA17_Chr8g0361141 58.491 53 20 1 1 53 686 736 1.11e-12 61.2
Msa0919340 MtrunA17_Chr7g0236631 58.537 41 17 0 1 41 24 64 1.16e-12 57.4
Msa0919340 MtrunA17_Chr8g0357781 56.604 53 22 1 1 53 1 52 1.16e-12 58.9
Msa0919340 MtrunA17_Chr8g0361161 58.491 53 20 1 1 53 214 264 1.19e-12 60.8
Msa0919340 MtrunA17_Chr8g0357761 54.098 61 25 2 1 59 650 709 1.63e-12 60.5
Msa0919340 MtrunA17_Chr4g0048581 55.357 56 17 2 1 53 701 751 1.76e-12 60.5
Msa0919340 MtrunA17_Chr8g0357661 54.717 53 23 1 1 53 33 84 1.83e-12 58.9
Msa0919340 MtrunA17_Chr3g0084451 58.491 53 21 1 1 53 676 727 1.90e-12 60.5
Msa0919340 MtrunA17_Chr8g0340051 54.717 53 23 1 1 53 199 250 1.99e-12 60.1
Msa0919340 MtrunA17_Chr8g0354391 52.830 53 24 1 1 53 104 155 2.17e-12 59.7
Msa0919340 MtrunA17_Chr7g0236341 54.902 51 21 1 1 51 688 736 2.25e-12 60.1
Msa0919340 MtrunA17_Chr8g0340071 54.717 53 23 1 1 53 673 724 2.41e-12 60.1
Msa0919340 MtrunA17_Chr8g0340081 54.717 53 23 1 1 53 677 728 2.63e-12 60.1
Msa0919340 MtrunA17_Chr8g0358121 56.604 53 22 1 1 53 632 683 2.81e-12 60.1
Msa0919340 MtrunA17_Chr3g0084431 54.717 53 23 1 1 53 664 715 2.89e-12 59.7
Msa0919340 MtrunA17_Chr5g0426941 54.902 51 23 0 1 51 509 559 3.05e-12 59.7
Msa0919340 MtrunA17_Chr7g0236201 56.863 51 20 1 1 51 640 688 3.10e-12 59.7
Msa0919340 MtrunA17_Chr7g0236121 56.863 51 20 1 1 51 674 722 3.10e-12 59.7
Msa0919340 MtrunA17_Chr8g0358161 58.491 53 21 1 1 53 216 267 3.20e-12 59.7
Msa0919340 MtrunA17_Chr8g0354441 54.717 53 23 1 1 53 520 571 3.23e-12 59.7
Msa0919340 MtrunA17_Chr8g0354331 52.727 55 25 1 1 55 270 323 3.30e-12 59.7
Msa0919340 MtrunA17_Chr8g0354421 54.717 53 23 1 1 53 533 584 3.46e-12 59.7
Msa0919340 MtrunA17_Chr5g0394011 54.717 53 23 1 1 53 521 572 3.74e-12 59.7
Msa0919340 MtrunA17_Chr8g0354431 54.717 53 23 1 1 53 512 563 4.25e-12 59.3
Msa0919340 MtrunA17_Chr8g0357711 52.459 61 26 2 1 59 647 706 4.63e-12 59.3
Msa0919340 MtrunA17_Chr8g0357961 58.491 53 21 1 1 53 654 705 5.00e-12 59.3
Msa0919340 MtrunA17_Chr8g0358071 56.604 53 22 1 1 53 646 697 5.05e-12 59.3
Msa0919340 MtrunA17_Chr8g0361301 52.830 53 24 1 1 53 676 727 5.15e-12 59.3
Msa0919340 MtrunA17_Chr8g0357981 56.604 53 22 1 1 53 475 526 5.31e-12 58.9
Msa0919340 MtrunA17_Chr8g0358081 54.717 53 23 1 1 53 631 682 5.40e-12 58.9
Msa0919340 MtrunA17_Chr8g0358101 56.604 53 22 1 1 53 634 685 5.73e-12 58.9
Msa0919340 MtrunA17_Chr8g0361261 52.830 53 24 1 1 53 707 758 5.74e-12 58.9
Msa0919340 MtrunA17_Chr3g0084441 56.604 53 22 1 1 53 676 727 5.79e-12 58.9
Msa0919340 MtrunA17_Chr3g0084661 56.604 53 22 1 1 53 203 254 5.86e-12 58.9
Msa0919340 MtrunA17_Chr8g0360201 56.604 53 21 1 1 53 576 626 5.88e-12 58.9
Msa0919340 MtrunA17_Chr3g0081071 50.943 53 25 1 1 53 99 150 6.15e-12 58.5
Msa0919340 MtrunA17_Chr4g0048631 56.604 53 22 1 1 53 702 753 6.72e-12 58.9
Msa0919340 MtrunA17_Chr8g0354271 52.941 51 23 1 1 51 505 554 6.72e-12 58.9
Msa0919340 MtrunA17_Chr1g0206561 50.980 51 25 0 1 51 499 549 6.79e-12 58.9
Msa0919340 MtrunA17_Chr8g0357881 56.604 53 22 1 1 53 646 697 7.32e-12 58.5
Msa0919340 MtrunA17_Chr3g0084411 54.717 53 23 1 1 53 669 720 7.77e-12 58.5
Msa0919340 MtrunA17_Chr8g0357991 56.604 53 22 1 1 53 655 706 7.99e-12 58.5
Msa0919340 MtrunA17_Chr7g0236231 52.941 51 23 1 1 51 688 737 8.16e-12 58.5
Msa0919340 MtrunA17_Chr8g0358061 54.717 53 23 1 1 53 226 277 8.99e-12 58.5
Msa0919340 MtrunA17_Chr3g0084421 54.717 53 23 1 1 53 632 683 9.16e-12 58.5
Msa0919340 MtrunA17_Chr4g0023221 52.830 53 24 1 1 53 900 951 9.69e-12 58.5
Msa0919340 MtrunA17_Chr3g0084681 54.717 53 23 1 1 53 634 685 1.19e-11 58.2
Msa0919340 MtrunA17_Chr8g0357921 56.604 53 22 1 1 53 1 52 1.24e-11 56.2
Msa0919340 MtrunA17_Chr8g0357871 58.824 51 20 1 1 51 1 50 1.26e-11 55.5
Msa0919340 MtrunA17_Chr6g0453561 49.057 53 26 1 1 53 37 88 1.32e-11 56.6
Msa0919340 MtrunA17_Chr1g0206551 52.941 51 24 0 1 51 205 255 1.34e-11 57.8
Msa0919340 MtrunA17_Chr1g0206461 52.941 51 23 1 1 51 503 552 1.62e-11 57.8
Msa0919340 MtrunA17_Chr3g0081011 52.830 53 24 1 1 53 509 560 1.72e-11 57.8
Msa0919340 MtrunA17_Chr4g0042391 53.704 54 22 2 1 53 623 674 2.02e-11 57.4
Msa0919340 MtrunA17_Chr3g0084491 54.717 53 23 1 1 53 676 727 2.02e-11 57.4
Msa0919340 MtrunA17_Chr4g0042381 50.943 53 25 1 1 53 623 674 2.16e-11 57.4
Msa0919340 MtrunA17_Chr1g0191091 66.667 36 12 0 1 36 33 68 2.16e-11 53.9
Msa0919340 MtrunA17_Chr2g0280691 58.182 55 17 3 1 53 696 746 2.28e-11 57.4
Msa0919340 MtrunA17_Chr1g0154371 56.863 51 21 1 1 51 526 575 2.33e-11 57.4
Msa0919340 MtrunA17_Chr4g0048781 50.943 53 25 1 1 53 158 209 2.36e-11 57.0
Msa0919340 MtrunA17_Chr1g0206231 53.846 52 23 1 1 52 516 566 2.44e-11 57.4
Msa0919340 MtrunA17_Chr7g0236651 54.902 51 22 1 1 51 655 704 2.53e-11 57.4
Msa0919340 MtrunA17_Chr3g0081001 50.943 53 25 1 1 53 513 564 2.56e-11 57.0
Msa0919340 MtrunA17_Chr3g0081031 60.976 41 16 0 1 41 522 562 2.62e-11 57.0
Msa0919340 MtrunA17_Chr1g0206531 52.941 51 23 1 1 51 507 556 2.72e-11 57.0
Msa0919340 MtrunA17_Chr3g0098781 52.830 53 24 1 1 53 81 132 3.34e-11 56.2
Msa0919340 MtrunA17_Chr3g0078531 52.830 53 24 1 1 53 697 748 3.50e-11 56.6
Msa0919340 MtrunA17_Chr1g0206521 52.941 51 23 1 1 51 505 554 3.71e-11 56.6
Msa0919340 MtrunA17_Chr1g0206521 52.941 51 23 1 1 51 1147 1196 3.71e-11 56.6
Msa0919340 MtrunA17_Chr8g0358031 56.604 53 22 1 1 53 649 700 4.05e-11 56.6
Msa0919340 MtrunA17_Chr2g0280751 53.704 54 21 2 1 53 696 746 4.13e-11 56.6
Msa0919340 MtrunA17_Chr2g0280711 54.902 51 22 1 1 51 700 749 4.26e-11 56.6
Msa0919340 MtrunA17_Chr3g0082941 50.943 53 25 1 1 53 343 394 4.77e-11 56.2
Msa0919340 MtrunA17_Chr3g0078541 50.943 53 25 1 1 53 700 751 5.18e-11 56.2
Msa0919340 MtrunA17_Chr8g0354281 50.943 53 25 1 1 53 505 556 5.71e-11 56.2
Msa0919340 MtrunA17_Chr3g0092301 54.717 53 23 1 1 53 100 151 5.97e-11 55.8
Msa0919340 MtrunA17_Chr3g0078521 50.943 53 25 1 1 53 689 740 5.99e-11 56.2
Msa0919340 MtrunA17_Chr4g0042441 49.057 53 26 1 1 53 670 721 7.28e-11 55.8
Msa0919340 MtrunA17_Chr8g0361281 52.830 53 24 1 1 53 683 734 8.19e-11 55.8
Msa0919340 MtrunA17_Chr8g0361341 50.943 53 25 1 1 53 8 59 8.89e-11 53.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0919340 AT4G23160.1 64.151 53 18 1 1 53 528 579 3.81e-16 71.2
Msa0919340 AT4G23140.1 64.151 53 18 1 1 53 520 571 1.05e-15 70.1
Msa0919340 AT4G23140.2 64.151 53 18 1 1 53 526 577 1.07e-15 70.1
Msa0919340 AT4G23150.1 62.264 53 19 1 1 53 505 556 1.17e-15 69.7
Msa0919340 AT4G23180.1 62.264 53 19 1 1 53 517 568 7.68e-15 67.4
Msa0919340 AT4G11530.1 58.491 53 22 0 1 53 521 573 8.39e-15 67.4
Msa0919340 AT1G11280.3 66.667 51 16 1 1 51 662 711 1.39e-14 67.0
Msa0919340 AT1G11280.2 66.667 51 16 1 1 51 674 723 1.39e-14 67.0
Msa0919340 AT1G11280.4 66.667 51 16 1 1 51 672 721 1.42e-14 67.0
Msa0919340 AT1G11280.1 66.667 51 16 1 1 51 684 733 1.50e-14 66.6
Msa0919340 AT4G23200.1 56.604 53 23 0 1 53 505 557 2.76e-14 65.9
Msa0919340 AT1G61430.11 58.730 63 20 2 1 63 635 691 2.88e-14 65.9
Msa0919340 AT1G61430.12 58.730 63 20 2 1 63 635 691 2.88e-14 65.9
Msa0919340 AT1G61430.13 58.730 63 20 2 1 63 635 691 2.88e-14 65.9
Msa0919340 AT1G61430.9 58.730 63 20 2 1 63 658 714 2.94e-14 65.9
Msa0919340 AT1G61430.1 58.730 63 20 2 1 63 661 717 3.00e-14 65.9
Msa0919340 AT4G23130.2 56.604 53 23 0 1 53 513 565 3.48e-14 65.9
Msa0919340 AT4G23130.1 56.604 53 23 0 1 53 509 561 3.55e-14 65.9
Msa0919340 AT4G23260.2 56.604 53 23 0 1 53 497 549 4.31e-14 65.5
Msa0919340 AT4G23260.1 56.604 53 23 0 1 53 508 560 4.40e-14 65.5
Msa0919340 AT4G11470.2 56.604 53 23 0 1 53 513 565 4.45e-14 65.5
Msa0919340 AT4G11470.1 56.604 53 23 0 1 53 508 560 4.49e-14 65.5
Msa0919340 AT4G23230.1 60.377 53 20 1 1 53 506 557 4.57e-14 65.5
Msa0919340 AT4G23250.1 56.604 53 23 0 1 53 528 580 4.63e-14 65.5
Msa0919340 AT4G23250.3 56.604 53 23 0 1 53 523 575 4.92e-14 65.5
Msa0919340 AT4G23250.2 56.604 53 23 0 1 53 523 575 5.06e-14 65.1
Msa0919340 AT4G23270.2 56.604 53 23 0 1 53 495 547 5.09e-14 65.1
Msa0919340 AT4G23270.1 56.604 53 23 0 1 53 495 547 5.09e-14 65.1
Msa0919340 AT4G11480.4 54.717 53 24 0 1 53 490 542 5.35e-14 65.1
Msa0919340 AT4G23270.3 56.604 53 23 0 1 53 495 547 5.56e-14 65.1
Msa0919340 AT3G45860.1 57.407 54 22 1 1 53 520 573 7.11e-14 64.7
Msa0919340 AT1G61370.1 64.706 51 17 1 1 51 670 719 1.04e-13 64.3
Msa0919340 AT1G61370.2 64.706 51 17 1 1 51 519 568 1.08e-13 64.3
Msa0919340 AT1G11340.1 60.377 53 18 2 1 53 684 733 1.09e-13 64.3
Msa0919340 AT1G61440.2 57.143 63 21 2 1 63 677 733 1.19e-13 64.3
Msa0919340 AT4G11480.3 54.717 53 24 0 1 53 493 545 1.24e-13 64.3
Msa0919340 AT1G61440.1 57.143 63 21 2 1 63 647 703 1.25e-13 64.3
Msa0919340 AT1G61440.3 57.143 63 21 2 1 63 652 708 1.25e-13 64.3
Msa0919340 AT4G11480.1 54.717 53 24 0 1 53 498 550 1.29e-13 63.9
Msa0919340 AT4G23310.2 52.830 53 25 0 1 53 637 689 1.56e-13 63.9
Msa0919340 AT4G23180.2 64.000 50 17 1 1 50 517 565 1.60e-13 63.9
Msa0919340 AT1G61380.2 62.745 51 18 1 1 51 510 559 1.64e-13 63.9
Msa0919340 AT1G61380.1 62.745 51 18 1 1 51 657 706 1.70e-13 63.9
Msa0919340 AT4G23290.1 61.404 57 14 3 1 53 489 541 2.43e-13 63.2
Msa0919340 AT4G23290.2 61.404 57 14 3 1 53 532 584 2.93e-13 63.2
Msa0919340 AT1G61360.1 62.745 51 18 1 1 51 667 716 2.98e-13 63.2
Msa0919340 AT1G61360.2 62.745 51 18 1 1 51 586 635 3.05e-13 63.2
Msa0919340 AT1G61360.3 62.745 51 18 1 1 51 586 635 3.05e-13 63.2
Msa0919340 AT1G61360.4 62.745 51 18 1 1 51 586 635 3.05e-13 63.2
Msa0919340 AT1G11410.4 60.784 51 17 2 1 51 699 746 3.16e-13 63.2
Msa0919340 AT1G11410.1 60.784 51 17 2 1 51 692 739 3.19e-13 63.2
Msa0919340 AT1G61430.10 68.000 50 15 1 1 50 635 683 3.20e-13 63.2
Msa0919340 AT1G11410.3 60.784 51 17 2 1 51 668 715 3.28e-13 62.8
Msa0919340 AT1G61430.5 68.000 50 15 1 1 50 661 709 3.33e-13 62.8
Msa0919340 AT1G11410.2 60.784 51 17 2 1 51 577 624 3.37e-13 62.8
Msa0919340 AT4G23310.1 52.830 53 25 0 1 53 677 729 3.38e-13 62.8
Msa0919340 AT1G61430.8 68.000 50 15 1 1 50 658 706 3.46e-13 62.8
Msa0919340 AT1G61430.7 68.000 50 15 1 1 50 658 706 3.46e-13 62.8
Msa0919340 AT4G21390.1 56.604 53 21 1 1 53 698 748 4.49e-13 62.4
Msa0919340 AT4G05200.2 56.604 53 22 1 1 53 534 585 6.46e-13 62.0
Msa0919340 AT4G05200.1 56.604 53 22 1 1 53 516 567 7.05e-13 62.0
Msa0919340 AT1G61610.1 54.717 53 22 1 1 53 694 744 7.17e-13 62.0
Msa0919340 AT4G23130.3 54.386 57 22 1 1 57 513 565 7.72e-13 62.0
Msa0919340 AT1G61400.2 62.745 51 18 1 1 51 677 726 1.03e-12 61.6
Msa0919340 AT1G61400.1 62.745 51 18 1 1 51 669 718 1.08e-12 61.6
Msa0919340 AT1G61480.1 60.784 51 19 1 1 51 665 714 1.86e-12 60.8
Msa0919340 AT1G61490.4 62.745 51 18 1 1 51 659 708 1.96e-12 60.8
Msa0919340 AT1G61490.1 62.745 51 18 1 1 51 659 708 1.96e-12 60.8
Msa0919340 AT1G61490.2 62.745 51 18 1 1 51 659 708 1.96e-12 60.8
Msa0919340 AT1G61490.5 62.745 51 18 1 1 51 659 708 1.96e-12 60.8
Msa0919340 AT1G61490.6 62.745 51 18 1 1 51 633 682 2.05e-12 60.8
Msa0919340 AT1G61490.7 62.745 51 18 1 1 51 633 682 2.05e-12 60.8
Msa0919340 AT1G61490.3 62.745 51 18 1 1 51 509 558 2.29e-12 60.5
Msa0919340 AT4G23300.1 52.727 55 24 1 1 53 522 576 2.61e-12 60.5
Msa0919340 AT1G61610.2 63.415 41 15 0 1 41 694 734 2.80e-12 60.5
Msa0919340 AT4G00960.2 55.769 52 20 2 1 51 133 182 3.02e-12 59.7
Msa0919340 AT4G11460.2 50.943 53 26 0 1 53 440 492 3.07e-12 60.1
Msa0919340 AT4G23190.2 81.818 33 6 0 1 33 519 551 3.09e-12 60.1
Msa0919340 AT4G21390.2 65.854 41 14 0 1 41 698 738 3.15e-12 60.1
Msa0919340 AT4G11460.3 50.943 53 26 0 1 53 515 567 3.21e-12 60.1
Msa0919340 AT4G00960.3 55.769 52 20 2 1 51 140 189 3.25e-12 59.7
Msa0919340 AT4G11460.1 50.943 53 26 0 1 53 518 570 3.40e-12 60.1
Msa0919340 AT4G23190.3 81.818 33 6 0 1 33 441 473 3.41e-12 60.1
Msa0919340 AT4G23190.4 81.818 33 6 0 1 33 441 473 3.41e-12 60.1
Msa0919340 AT4G23190.1 81.818 33 6 0 1 33 519 551 3.50e-12 60.1
Msa0919340 AT4G00960.1 55.769 52 20 2 1 51 227 276 3.68e-12 60.1
Msa0919340 AT4G38830.1 54.902 51 22 1 1 51 514 563 3.74e-12 60.1
Msa0919340 AT4G23320.3 54.717 53 24 0 1 53 373 425 4.64e-12 59.7
Msa0919340 AT4G23320.2 54.717 53 24 0 1 53 352 404 4.72e-12 59.7
Msa0919340 AT4G23320.1 54.717 53 24 0 1 53 352 404 4.72e-12 59.7
Msa0919340 AT1G61550.1 58.824 51 20 1 1 51 658 707 5.15e-12 59.7
Msa0919340 AT4G23280.3 50.943 53 26 0 1 53 463 515 5.62e-12 59.3
Msa0919340 AT1G11340.3 61.538 52 17 2 1 52 752 800 5.85e-12 59.3
Msa0919340 AT4G23210.3 50.943 53 23 1 1 53 527 576 7.06e-12 59.3
Msa0919340 AT1G61500.2 58.824 51 20 1 1 51 642 691 8.22e-12 58.9
Msa0919340 AT1G11330.1 48.571 70 26 2 1 70 691 750 8.24e-12 58.9
Msa0919340 AT1G11330.2 48.571 70 26 2 1 70 693 752 8.40e-12 58.9
Msa0919340 AT4G23210.1 50.000 60 25 2 1 60 527 581 8.64e-12 58.9
Msa0919340 AT1G61500.3 58.824 51 20 1 1 51 665 714 8.64e-12 58.9
Msa0919340 AT1G61500.1 58.824 51 20 1 1 51 660 709 8.81e-12 58.9
Msa0919340 AT1G61420.3 56.863 51 21 1 1 51 513 562 9.46e-12 58.9
Msa0919340 AT1G61420.5 56.863 51 21 1 1 51 515 564 9.46e-12 58.9
Msa0919340 AT1G61420.2 56.863 51 21 1 1 51 665 714 1.00e-11 58.9
Msa0919340 AT1G61420.4 56.863 51 21 1 1 51 665 714 1.00e-11 58.9
Msa0919340 AT1G61420.1 56.863 51 21 1 1 51 663 712 1.01e-11 58.5
Msa0919340 AT1G11303.1 54.717 53 16 1 1 53 678 722 1.02e-11 58.5
Msa0919340 AT4G00970.1 53.846 52 21 2 1 51 515 564 1.23e-11 58.5
Msa0919340 AT4G23280.1 50.943 53 26 0 1 53 513 565 1.50e-11 58.2
Msa0919340 AT4G23280.2 50.943 53 26 0 1 53 511 563 1.53e-11 58.2
Msa0919340 AT4G21366.1 52.941 51 23 1 1 51 1 50 1.81e-11 55.5
Msa0919340 AT4G23240.2 57.895 57 16 3 1 53 197 249 1.82e-11 57.8
Msa0919340 AT1G61390.1 60.784 51 17 2 1 51 689 736 2.00e-11 57.8
Msa0919340 AT1G65790.1 58.824 51 20 1 1 51 688 737 2.02e-11 57.8
Msa0919340 AT3G16030.1 57.143 56 18 3 1 53 696 748 2.05e-11 57.8
Msa0919340 AT3G16030.2 57.143 56 18 3 1 53 573 625 2.07e-11 57.8
Msa0919340 AT3G16030.6 57.143 56 18 3 1 53 717 769 2.15e-11 57.8
Msa0919340 AT1G61390.2 60.784 51 17 2 1 51 521 568 2.15e-11 57.8
Msa0919340 AT4G11490.1 50.980 51 25 0 1 51 490 540 2.30e-11 57.8
Msa0919340 AT1G65800.1 58.824 51 20 1 1 51 692 741 2.32e-11 57.8
Msa0919340 AT4G04500.1 75.758 33 8 0 1 33 514 546 2.35e-11 57.8
Msa0919340 AT4G23240.1 57.895 57 16 3 1 53 504 556 2.44e-11 57.8
Msa0919340 AT1G11300.2 52.830 53 17 1 1 53 663 707 2.56e-11 57.8
Msa0919340 AT1G11300.1 52.830 53 17 1 1 53 678 722 2.63e-11 57.4
Msa0919340 AT1G67520.5 57.143 56 18 3 1 53 428 480 3.04e-11 57.4
Msa0919340 AT1G67520.8 57.143 56 18 3 1 53 457 509 3.33e-11 57.4
Msa0919340 AT1G67520.7 57.143 56 18 3 1 53 457 509 3.33e-11 57.4
Msa0919340 AT1G67520.6 57.143 56 18 3 1 53 672 724 3.57e-11 57.0
Msa0919340 AT1G67520.3 57.143 56 18 3 1 53 665 717 3.78e-11 57.0
Msa0919340 AT4G03230.2 50.943 53 25 1 1 53 759 810 4.10e-11 57.0
Msa0919340 AT4G03230.6 50.943 53 25 1 1 53 759 810 4.10e-11 57.0
Msa0919340 AT1G67520.4 57.143 56 18 3 1 53 622 674 4.16e-11 57.0
Msa0919340 AT4G03230.5 50.943 53 25 1 1 53 787 838 4.27e-11 57.0
Msa0919340 AT4G03230.3 50.943 53 25 1 1 53 694 745 4.30e-11 57.0
Msa0919340 AT4G03230.7 50.943 53 25 1 1 53 702 753 4.43e-11 57.0
Msa0919340 AT4G03230.4 50.943 53 25 1 1 53 859 910 4.81e-11 57.0
Msa0919340 AT4G03230.1 50.943 53 25 1 1 53 859 910 4.81e-11 57.0
Msa0919340 AT4G03230.8 50.943 53 25 1 1 53 701 752 5.54e-11 56.6
Msa0919340 AT1G11350.1 52.830 53 24 1 1 53 681 732 6.54e-11 56.6
Msa0919340 AT4G21410.3 51.923 52 24 1 1 51 528 579 9.89e-11 55.8

Find 14 sgRNAs with CRISPR-Local

Find 21 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAACTTATATTCTTCTTTC+CGG 0.152599 6_2:+51153063 None:intergenic
AAATCCGACATTTATAGTTT+TGG 0.258466 6_2:-51153109 Msa0919340:CDS
TTTCAGGTATGGACTTTAGT+TGG 0.352579 6_2:-51152907 Msa0919340:intron
TGTCCAAGCATTGCATATTC+CGG 0.395507 6_2:+51153142 None:intergenic
TTCAGGTATGGACTTTAGTT+GGG 0.412248 6_2:-51152906 Msa0919340:intron
CTGTAGTGGTTATATGTCTC+CGG 0.498031 6_2:-51153161 None:intergenic
TCTCCGGAATATGCAATGCT+TGG 0.513207 6_2:-51153145 Msa0919340:CDS
AGGCCATCAGCAACATGTTG+TGG 0.560390 6_2:+51153034 None:intergenic
AACTCCAAAACTATAAATGT+CGG 0.562787 6_2:+51153105 None:intergenic
CACTGCAGTACAAGAAATGA+CGG 0.568346 6_2:-51152874 Msa0919340:CDS
ACTCCACAACATGTTGCTGA+TGG 0.576084 6_2:-51153037 Msa0919340:CDS
ACTGCAGTACAAGAAATGAC+GGG 0.590283 6_2:-51152873 Msa0919340:CDS
TTACACTCACATGATTCAAG+AGG 0.624155 6_2:+51153014 None:intergenic
CTGCAGTACAAGAAATGACG+GGG 0.696803 6_2:-51152872 Msa0919340:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATTTCTCACATTATTTC+AGG - chr6_2:51153074-51153093 Msa0919340:CDS 20.0%
!! AAATCCGACATTTATAGTTT+TGG - chr6_2:51152888-51152907 Msa0919340:CDS 25.0%
! AACTCCAAAACTATAAATGT+CGG + chr6_2:51152895-51152914 None:intergenic 25.0%
! TGAACTTATATTCTTCTTTC+CGG + chr6_2:51152937-51152956 None:intergenic 25.0%
!! ATGCTTTTAGAGATTATTGC+CGG - chr6_2:51152915-51152934 Msa0919340:intron 30.0%
! TTCTCACATTATTTCAGGTA+TGG - chr6_2:51153079-51153098 Msa0919340:CDS 30.0%
TTACACTCACATGATTCAAG+AGG + chr6_2:51152986-51153005 None:intergenic 35.0%
ACTAAAGATTGTTCCCAGTT+CGG + chr6_2:51153046-51153065 None:intergenic 35.0%
AACTGGGAACAATCTTTAGT+TGG - chr6_2:51153046-51153065 Msa0919340:CDS 35.0%
! TTTCAGGTATGGACTTTAGT+TGG - chr6_2:51153090-51153109 Msa0919340:CDS 35.0%
TTCAGGTATGGACTTTAGTT+GGG - chr6_2:51153091-51153110 Msa0919340:CDS 35.0%
! TGTCCAAGCATTGCATATTC+CGG + chr6_2:51152858-51152877 None:intergenic 40.0%
CACTGCAGTACAAGAAATGA+CGG - chr6_2:51153123-51153142 Msa0919340:CDS 40.0%
ACTGCAGTACAAGAAATGAC+GGG - chr6_2:51153124-51153143 Msa0919340:CDS 40.0%
TCTCCGGAATATGCAATGCT+TGG - chr6_2:51152852-51152871 Msa0919340:CDS 45.0%
ACTCCACAACATGTTGCTGA+TGG - chr6_2:51152960-51152979 Msa0919340:intron 45.0%
CTGCAGTACAAGAAATGACG+GGG - chr6_2:51153125-51153144 Msa0919340:CDS 45.0%
AGGCCATCAGCAACATGTTG+TGG + chr6_2:51152966-51152985 None:intergenic 50.0%
CGGACTCGAGAAGAACAAGA+AGG + chr6_2:51153026-51153045 None:intergenic 50.0%
TGTTCTTCTCGAGTCCGAAC+TGG - chr6_2:51153029-51153048 Msa0919340:CDS 50.0%
GTTCTTCTCGAGTCCGAACT+GGG - chr6_2:51153030-51153049 Msa0919340:CDS 50.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 51152849 51153170 51152849 ID=Msa0919340;Name=Msa0919340
chr6_2 mRNA 51152849 51153170 51152849 ID=Msa0919340-mRNA-1;Parent=Msa0919340;Name=Msa0919340-mRNA-1;_AED=0.88;_eAED=0.88;_QI=0|0|0|0.5|1|1|2|0|73
chr6_2 exon 51153024 51153170 51153024 ID=Msa0919340-mRNA-1:exon:7656;Parent=Msa0919340-mRNA-1
chr6_2 exon 51152849 51152923 51152849 ID=Msa0919340-mRNA-1:exon:7655;Parent=Msa0919340-mRNA-1
chr6_2 CDS 51153024 51153170 51153024 ID=Msa0919340-mRNA-1:cds;Parent=Msa0919340-mRNA-1
chr6_2 CDS 51152849 51152923 51152849 ID=Msa0919340-mRNA-1:cds;Parent=Msa0919340-mRNA-1
Gene Sequence

>Msa0919340

ATGTCTCCGGAATATGCAATGCTTGGACAATTTTCTGAAAAATCCGACATTTATAGTTTTGGAGTTATGCTTTTAGAGATTATTGCCGGAAAGAAGAATATAAGTTCATTTACTCCACAACATGTTGCTGATGGCCTCTTGAATCATGTATGGACTTTAGTTGGGATTGTGATTCACTGCAGTACAAGAAATGACGGGGTCGCACAGTCAAACAAAGAATAG
Protein sequence

>Msa0919340

MSPEYAMLGQFSEKSDIYSFGVMLLEIIAGKKNISSFTPQHVADGLLNHVWTLVGIVIHCSTRNDGVAQSNKE*