Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0920840 | MCH82909.1 | 63.084 | 214 | 68 | 3 | 10 | 213 | 4 | 216 | 2.25e-82 | 273 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0920840 | sp|Q6NQJ7|FRS4_ARATH | 32.258 | 186 | 119 | 4 | 40 | 218 | 3 | 188 | 4.05e-21 | 101 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0920840 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0920840 | MtrunA17_Chr2g0296781 | 69.355 | 186 | 43 | 3 | 40 | 213 | 3 | 186 | 6.12e-78 | 261 |
| Msa0920840 | MtrunA17_Chr2g0296781 | 49.162 | 179 | 62 | 5 | 267 | 417 | 538 | 715 | 4.20e-34 | 137 |
| Msa0920840 | MtrunA17_Chr2g0296781 | 78.182 | 55 | 12 | 0 | 211 | 265 | 336 | 390 | 9.85e-21 | 96.7 |
| Msa0920840 | MtrunA17_Chr1g0196541 | 52.459 | 183 | 77 | 2 | 40 | 212 | 3 | 185 | 6.15e-52 | 189 |
| Msa0920840 | MtrunA17_Chr1g0196541 | 38.034 | 234 | 84 | 7 | 267 | 479 | 538 | 731 | 1.00e-30 | 127 |
| Msa0920840 | MtrunA17_Chr1g0196541 | 75.000 | 52 | 13 | 0 | 214 | 265 | 339 | 390 | 9.27e-20 | 93.6 |
| Msa0920840 | MtrunA17_Chr6g0476441 | 42.742 | 248 | 83 | 6 | 267 | 456 | 43 | 289 | 2.86e-43 | 156 |
| Msa0920840 | MtrunA17_Chr6g0477261 | 44.796 | 221 | 83 | 6 | 267 | 449 | 427 | 646 | 5.28e-39 | 152 |
| Msa0920840 | MtrunA17_Chr6g0477261 | 87.500 | 72 | 9 | 0 | 142 | 213 | 4 | 75 | 1.14e-33 | 136 |
| Msa0920840 | MtrunA17_Chr6g0477261 | 80.000 | 55 | 11 | 0 | 211 | 265 | 225 | 279 | 2.49e-21 | 98.2 |
| Msa0920840 | MtrunA17_Chr6g0476431 | 54.545 | 88 | 35 | 2 | 40 | 124 | 3 | 88 | 7.18e-25 | 98.6 |
| Msa0920840 | MtrunA17_Chr5g0441581 | 33.197 | 244 | 137 | 8 | 20 | 252 | 15 | 243 | 1.72e-23 | 105 |
| Msa0920840 | MtrunA17_Chr5g0441581 | 60.000 | 50 | 20 | 0 | 216 | 265 | 369 | 418 | 1.45e-12 | 70.5 |
| Msa0920840 | MtrunA17_Chr2g0329031 | 29.319 | 191 | 126 | 3 | 40 | 223 | 20 | 208 | 9.17e-18 | 87.0 |
| Msa0920840 | MtrunA17_Chr6g0451441 | 28.926 | 242 | 146 | 8 | 2 | 223 | 52 | 287 | 8.04e-17 | 83.2 |
| Msa0920840 | MtrunA17_Chr1g0207551 | 26.829 | 205 | 138 | 4 | 31 | 223 | 31 | 235 | 6.52e-14 | 75.1 |
| Msa0920840 | MtrunA17_Chr8g0363841 | 26.389 | 216 | 141 | 3 | 30 | 227 | 10 | 225 | 1.22e-13 | 73.9 |
| Msa0920840 | MtrunA17_Chr7g0258861 | 25.114 | 219 | 135 | 5 | 31 | 227 | 7 | 218 | 4.52e-13 | 70.5 |
| Msa0920840 | MtrunA17_Chr2g0291591 | 24.903 | 257 | 166 | 7 | 10 | 252 | 39 | 282 | 4.17e-12 | 68.9 |
| Msa0920840 | MtrunA17_Chr2g0291581 | 26.374 | 182 | 130 | 3 | 34 | 213 | 71 | 250 | 5.53e-12 | 68.6 |
| Msa0920840 | MtrunA17_Chr3g0080351 | 26.000 | 200 | 116 | 5 | 33 | 214 | 75 | 260 | 5.93e-12 | 68.9 |
| Msa0920840 | MtrunA17_Chr3g0077731 | 47.222 | 108 | 44 | 4 | 322 | 417 | 1 | 107 | 6.45e-12 | 62.8 |
| Msa0920840 | MtrunA17_Chr5g0448761 | 26.108 | 203 | 130 | 5 | 31 | 214 | 57 | 258 | 9.13e-12 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0920840 | AT1G76320.2 | 32.258 | 186 | 119 | 4 | 40 | 218 | 3 | 188 | 3.86e-22 | 101 |
| Msa0920840 | AT1G76320.1 | 32.258 | 186 | 119 | 4 | 40 | 218 | 3 | 188 | 4.12e-22 | 101 |
| Msa0920840 | AT1G76320.4 | 32.258 | 186 | 119 | 4 | 40 | 218 | 3 | 188 | 4.12e-22 | 101 |
| Msa0920840 | AT1G76320.3 | 32.258 | 186 | 119 | 4 | 40 | 218 | 3 | 188 | 4.74e-22 | 100 |
| Msa0920840 | AT4G15090.1 | 25.941 | 239 | 145 | 7 | 31 | 254 | 48 | 269 | 1.24e-16 | 84.3 |
| Msa0920840 | AT4G15090.5 | 25.941 | 239 | 145 | 7 | 31 | 254 | 48 | 269 | 1.24e-16 | 84.3 |
| Msa0920840 | AT4G15090.3 | 25.941 | 239 | 145 | 7 | 31 | 254 | 48 | 269 | 1.24e-16 | 84.3 |
| Msa0920840 | AT4G15090.2 | 25.941 | 239 | 145 | 7 | 31 | 254 | 48 | 269 | 1.24e-16 | 84.3 |
| Msa0920840 | AT4G15090.4 | 25.941 | 239 | 145 | 7 | 31 | 254 | 48 | 269 | 1.24e-16 | 84.3 |
| Msa0920840 | AT4G38180.1 | 25.000 | 216 | 143 | 4 | 17 | 214 | 56 | 270 | 1.38e-11 | 68.2 |
Find 84 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACTGATAAGTATTGAATT+TGG | 0.219647 | 6_2:+56449851 | None:intergenic |
| CAAGAGTTATGCCCAATCTA+TGG | 0.242427 | 6_2:-56452161 | Msa0920840:CDS |
| AATGCATGTATTTCTTTAGA+TGG | 0.249459 | 6_2:-56451985 | Msa0920840:CDS |
| CTGCTGCTGCTGTCATGTGC+TGG | 0.257330 | 6_2:-56449442 | Msa0920840:CDS |
| CTAAAATAGCGTGCTTTGTC+AGG | 0.272247 | 6_2:+56451913 | None:intergenic |
| CTAGTATTTCATGTTCCTTT+TGG | 0.276527 | 6_2:-56448878 | Msa0920840:CDS |
| TTTGAGTAAGAGTGATTTCA+TGG | 0.279123 | 6_2:-56451194 | Msa0920840:intron |
| CCTTTACTTCGAGTCGGTAT+AGG | 0.287148 | 6_2:+56450287 | None:intergenic |
| TATGCCCAATCTATGGGTTT+TGG | 0.292447 | 6_2:-56452154 | Msa0920840:CDS |
| GTCAAGTGCTTGACAAGTTT+TGG | 0.299935 | 6_2:-56449351 | Msa0920840:CDS |
| GCTGTCATGTGCTGGACTTT+TGG | 0.312340 | 6_2:-56449434 | Msa0920840:CDS |
| CATATGTGAGAGACACGTTT+TGG | 0.314193 | 6_2:-56451081 | Msa0920840:CDS |
| TATCTAACTAAAACAGTTCC+AGG | 0.321980 | 6_2:+56448767 | None:intergenic |
| TTTGGGCTTGTTGGCCTCCT+TGG | 0.358635 | 6_2:-56449411 | Msa0920840:CDS |
| TCAGCTAGAACTTGTTCATC+AGG | 0.360631 | 6_2:-56448840 | Msa0920840:CDS |
| CTTTACTTCGAGTCGGTATA+GGG | 0.362130 | 6_2:+56450288 | None:intergenic |
| TACCTGTAACAATTCAAAAT+AGG | 0.379552 | 6_2:+56449699 | None:intergenic |
| TTCATGACTTGAGAATAAAA+TGG | 0.385023 | 6_2:+56449733 | None:intergenic |
| TCTAGCTGACAACAATTTGC+AGG | 0.385340 | 6_2:+56448854 | None:intergenic |
| TAACTCCAAAACCCATAGAT+TGG | 0.409903 | 6_2:+56452149 | None:intergenic |
| CATGAAAATAAGATTTCAAA+AGG | 0.415528 | 6_2:-56448794 | Msa0920840:CDS |
| AAGGGCGTCCTCCTTCAAAA+AGG | 0.415773 | 6_2:-56450268 | Msa0920840:CDS |
| GAGTGATTTCATGGAAAAGT+TGG | 0.420339 | 6_2:-56451185 | Msa0920840:CDS |
| ACTTATCAGTGAAGTAAATC+AGG | 0.424397 | 6_2:-56449840 | Msa0920840:intron |
| CAACAATTTGCAGGCCCAAA+AGG | 0.437800 | 6_2:+56448863 | None:intergenic |
| TATTCTCAAGTCATGAATCA+TGG | 0.442758 | 6_2:-56449727 | Msa0920840:CDS |
| GTTGGCCTCCTTGGCAGCAA+AGG | 0.449561 | 6_2:-56449402 | Msa0920840:CDS |
| AAGTATTGAATTTGGATTGA+AGG | 0.452798 | 6_2:+56449859 | None:intergenic |
| ATTTGATGAAAGAAATCGTT+GGG | 0.454237 | 6_2:-56451110 | Msa0920840:CDS |
| CATTCAATCTAGCCTTGCAC+TGG | 0.454810 | 6_2:+56452004 | None:intergenic |
| AACTCCAAAACCCATAGATT+GGG | 0.455626 | 6_2:+56452150 | None:intergenic |
| GAATATGACATTTGGTGAAA+AGG | 0.456326 | 6_2:-56451776 | Msa0920840:CDS |
| GTTCAAGTAGTTGATGTAGT+TGG | 0.457215 | 6_2:-56450057 | Msa0920840:CDS |
| TTGGCCGTCATGTGCTTGAC+AGG | 0.462181 | 6_2:-56449327 | Msa0920840:intron |
| ACTTAAAACCTTTGCTGCCA+AGG | 0.468326 | 6_2:+56449394 | None:intergenic |
| AAGATTTCAAAAGGGAAGCC+TGG | 0.468615 | 6_2:-56448785 | Msa0920840:CDS |
| CCACTGAGAGAAAATATAAG+AGG | 0.477796 | 6_2:+56450568 | None:intergenic |
| GGTTATGAGAATATGACATT+TGG | 0.482364 | 6_2:-56451784 | Msa0920840:CDS |
| AGTATTGAATTTGGATTGAA+GGG | 0.484220 | 6_2:+56449860 | None:intergenic |
| GAACCATCTTCCACAATGCC+AGG | 0.487132 | 6_2:+56450341 | None:intergenic |
| TCAATGGTTGTTGAAGCAAA+TGG | 0.495114 | 6_2:-56451805 | Msa0920840:CDS |
| TGGATCAAAGTATGTGAGTA+AGG | 0.495275 | 6_2:-56452064 | Msa0920840:CDS |
| CTATACCGACTCGAAGTAAA+GGG | 0.496353 | 6_2:-56450286 | Msa0920840:CDS |
| TCATGATAATGAATGGTTGA+AGG | 0.498087 | 6_2:-56451137 | Msa0920840:CDS |
| CATGATAATGAATGGTTGAA+GGG | 0.498314 | 6_2:-56451136 | Msa0920840:CDS |
| TCCCCTGGCATTGTGGAAGA+TGG | 0.500694 | 6_2:-56450344 | Msa0920840:CDS |
| TTGAACTTCATGATAATGAA+TGG | 0.502013 | 6_2:-56451144 | Msa0920840:CDS |
| AAGAGTTATGCCCAATCTAT+GGG | 0.502102 | 6_2:-56452160 | Msa0920840:CDS |
| CCTATACCGACTCGAAGTAA+AGG | 0.502755 | 6_2:-56450287 | Msa0920840:CDS |
| ATTTGTATCTTCTGATGAAG+AGG | 0.520293 | 6_2:-56452302 | Msa0920840:CDS |
| AAGTGAGGAGACTACCACTT+GGG | 0.530645 | 6_2:-56451732 | Msa0920840:CDS |
| AACGTGTCTCTCACATATGC+AGG | 0.530851 | 6_2:+56451085 | None:intergenic |
| AGGAGACTACCACTTGGGGC+TGG | 0.531793 | 6_2:-56451727 | Msa0920840:CDS |
| CAGCTAGAACTTGTTCATCA+GGG | 0.536631 | 6_2:-56448839 | Msa0920840:CDS |
| TAAAATAGCGTGCTTTGTCA+GGG | 0.562727 | 6_2:+56451914 | None:intergenic |
| TTAGAACTCAATGATCAAGC+TGG | 0.567016 | 6_2:-56451853 | Msa0920840:CDS |
| ACATCTAAAGAAGCATCCCC+TGG | 0.571974 | 6_2:-56450359 | Msa0920840:CDS |
| AACCATCTTCCACAATGCCA+GGG | 0.580735 | 6_2:+56450342 | None:intergenic |
| TGAGAGAAAATATAAGAGGA+TGG | 0.581159 | 6_2:+56450572 | None:intergenic |
| AGACATACCCTTGTTAAATG+TGG | 0.581997 | 6_2:-56450527 | Msa0920840:CDS |
| AGAAGCATCCCCTGGCATTG+TGG | 0.590947 | 6_2:-56450351 | Msa0920840:CDS |
| ATGAAAATAAGATTTCAAAA+GGG | 0.592167 | 6_2:-56448793 | Msa0920840:CDS |
| ATTCAATCTAGCCTTGCACT+GGG | 0.599186 | 6_2:+56452005 | None:intergenic |
| TATTTGATGAAAGAAATCGT+TGG | 0.605577 | 6_2:-56451111 | Msa0920840:CDS |
| GATCAAAACCACATTTAACA+AGG | 0.611615 | 6_2:+56450519 | None:intergenic |
| ATGATAATGAATGGTTGAAG+GGG | 0.618077 | 6_2:-56451135 | Msa0920840:CDS |
| CGTGTTATTGATGACGACGA+CGG | 0.620902 | 6_2:+56449570 | None:intergenic |
| GATGAAGAGGAAATCAGAGA+GGG | 0.625109 | 6_2:-56452289 | Msa0920840:CDS |
| ACTTGGGGCTGGAGATGCTG+AGG | 0.633689 | 6_2:-56451716 | Msa0920840:CDS |
| ATCAAAACCACATTTAACAA+GGG | 0.648419 | 6_2:+56450520 | None:intergenic |
| GAAACTATATAGATAAAGTG+AGG | 0.649765 | 6_2:-56451747 | Msa0920840:CDS |
| TTTGGGAGGAATGGACATGG+TGG | 0.651520 | 6_2:-56449899 | Msa0920840:CDS |
| ACCATCTTCCACAATGCCAG+GGG | 0.654020 | 6_2:+56450343 | None:intergenic |
| GGACGCCCTTTACTTCGAGT+CGG | 0.664200 | 6_2:+56450281 | None:intergenic |
| AAAACCTGTCAAGCACATGA+CGG | 0.667257 | 6_2:+56449323 | None:intergenic |
| TCAGCATCTCCAGCCCCAAG+TGG | 0.667717 | 6_2:+56451718 | None:intergenic |
| AAAGTGAGGAGACTACCACT+TGG | 0.668342 | 6_2:-56451733 | Msa0920840:CDS |
| TAAAACCTTTGCTGCCAAGG+AGG | 0.671942 | 6_2:+56449397 | None:intergenic |
| ACAGAGTGGATATCAACAAG+AGG | 0.672348 | 6_2:-56450180 | Msa0920840:intron |
| CTTGTACTTTAGATGCACAC+AGG | 0.674948 | 6_2:+56450085 | None:intergenic |
| AGTGAGGAGACTACCACTTG+GGG | 0.676184 | 6_2:-56451731 | Msa0920840:CDS |
| TGATGAAGAGGAAATCAGAG+AGG | 0.679814 | 6_2:-56452290 | Msa0920840:CDS |
| CTAAATATAGATCCAACCTG+AGG | 0.702632 | 6_2:+56452211 | None:intergenic |
| ACGACGACGGATCATTCACA+TGG | 0.715885 | 6_2:+56449583 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTCTAATATTCAATATTTAA+TGG | - | chr6_2:56450966-56450985 | Msa0920840:intron | 15.0% |
| !!! | TTTAATACGTATATGTTTTT+AGG | - | chr6_2:56451143-56451162 | Msa0920840:CDS | 15.0% |
| !!! | TTAATACGTATATGTTTTTA+GGG | - | chr6_2:56451144-56451163 | Msa0920840:CDS | 15.0% |
| !! | TACAAATTCATTAATTATGT+TGG | - | chr6_2:56451450-56451469 | Msa0920840:intron | 15.0% |
| !! | ATGAAAATAAGATTTCAAAA+GGG | - | chr6_2:56452286-56452305 | Msa0920840:CDS | 15.0% |
| !!! | TTTTAGAAGTAGTAAGTTTT+TGG | - | chr6_2:56449183-56449202 | Msa0920840:intron | 20.0% |
| !!! | AAATTCTTTGAATTTTGCAT+TGG | + | chr6_2:56450241-56450260 | None:intergenic | 20.0% |
| !! | AAAATTCAAAGAATTTCAAG+TGG | - | chr6_2:56450245-56450264 | Msa0920840:CDS | 20.0% |
| !! | AATTAAAGATATAGTGTTTG+AGG | - | chr6_2:56450365-56450384 | Msa0920840:CDS | 20.0% |
| !!! | AATTCAAAGGTATTTTATGT+AGG | - | chr6_2:56450439-56450458 | Msa0920840:intron | 20.0% |
| !!! | CATTTTAAACAAATCATCAT+CGG | + | chr6_2:56450667-56450686 | None:intergenic | 20.0% |
| !!! | ATGATGATTTGTTTAAAATG+AGG | - | chr6_2:56450667-56450686 | Msa0920840:intron | 20.0% |
| !!! | ATTTGTTTAAAATGAGGAAT+TGG | - | chr6_2:56450673-56450692 | Msa0920840:intron | 20.0% |
| !! | AATATTCAATATTTAATGGC+AGG | - | chr6_2:56450970-56450989 | Msa0920840:intron | 20.0% |
| !! | ATATTCAATATTTAATGGCA+GGG | - | chr6_2:56450971-56450990 | Msa0920840:intron | 20.0% |
| !!! | TAATACGTATATGTTTTTAG+GGG | - | chr6_2:56451145-56451164 | Msa0920840:CDS | 20.0% |
| !!! | AAGTATTTTCCATGTTATTT+AGG | - | chr6_2:56451321-56451340 | Msa0920840:intron | 20.0% |
| !!! | ATTTTTAAATCTGCTATGTA+AGG | - | chr6_2:56452071-56452090 | Msa0920840:intron | 20.0% |
| !! | CATGAAAATAAGATTTCAAA+AGG | - | chr6_2:56452285-56452304 | Msa0920840:CDS | 20.0% |
| ! | AGTAACAAAAATACAGATGA+TGG | - | chr6_2:56448961-56448980 | Msa0920840:intron | 25.0% |
| ! | GTAACAAAAATACAGATGAT+GGG | - | chr6_2:56448962-56448981 | Msa0920840:intron | 25.0% |
| ! | AATGCATGTATTTCTTTAGA+TGG | - | chr6_2:56449094-56449113 | Msa0920840:intron | 25.0% |
| ! | GAAACTATATAGATAAAGTG+AGG | - | chr6_2:56449332-56449351 | Msa0920840:CDS | 25.0% |
| ! | TTTGTGGCATATAATGAAAA+AGG | - | chr6_2:56449789-56449808 | Msa0920840:intron | 25.0% |
| !! | TTGAACTTCATGATAATGAA+TGG | - | chr6_2:56449935-56449954 | Msa0920840:intron | 25.0% |
| ! | TATTTGATGAAAGAAATCGT+TGG | - | chr6_2:56449968-56449987 | Msa0920840:intron | 25.0% |
| ! | ATTTGATGAAAGAAATCGTT+GGG | - | chr6_2:56449969-56449988 | Msa0920840:intron | 25.0% |
| !!! | AGTATGAACTCATTTTTTGA+TGG | - | chr6_2:56450051-56450070 | Msa0920840:CDS | 25.0% |
| ! | ATTGAGAGATAAAGTTGAAA+AGG | - | chr6_2:56450128-56450147 | Msa0920840:intron | 25.0% |
| ! | TAAAGTTGAAAAGGAAAACA+AGG | - | chr6_2:56450137-56450156 | Msa0920840:intron | 25.0% |
| !!! | ATAGCTTGTATAAGTCATTT+TGG | - | chr6_2:56450186-56450205 | Msa0920840:CDS | 25.0% |
| !! | TGTTGTTTGTTTCAATTCAA+AGG | - | chr6_2:56450426-56450445 | Msa0920840:intron | 25.0% |
| ! | ATCAAAACCACATTTAACAA+GGG | + | chr6_2:56450562-56450581 | None:intergenic | 25.0% |
| !!! | AATACGTATATGTTTTTAGG+GGG | - | chr6_2:56451146-56451165 | Msa0920840:CDS | 25.0% |
| !! | AGTATTGAATTTGGATTGAA+GGG | + | chr6_2:56451222-56451241 | None:intergenic | 25.0% |
| !!! | AAGTATTGAATTTGGATTGA+AGG | + | chr6_2:56451223-56451242 | None:intergenic | 25.0% |
| !!! | TCACTGATAAGTATTGAATT+TGG | + | chr6_2:56451231-56451250 | None:intergenic | 25.0% |
| ! | TTCCTGTAACATTAATATTG+TGG | - | chr6_2:56451291-56451310 | Msa0920840:intron | 25.0% |
| ! | ATCCACAATATTAATGTTAC+AGG | + | chr6_2:56451296-56451315 | None:intergenic | 25.0% |
| ! | AAAATGGAACCTAAATAACA+TGG | + | chr6_2:56451333-56451352 | None:intergenic | 25.0% |
| ! | TTCATGACTTGAGAATAAAA+TGG | + | chr6_2:56451349-56451368 | None:intergenic | 25.0% |
| !!! | TTCCTATTTTGAATTGTTAC+AGG | - | chr6_2:56451378-56451397 | Msa0920840:intron | 25.0% |
| ! | TACCTGTAACAATTCAAAAT+AGG | + | chr6_2:56451383-56451402 | None:intergenic | 25.0% |
| ! | TAGTTATTGTTAGTAGTGTT+AGG | - | chr6_2:56451841-56451860 | Msa0920840:CDS | 25.0% |
| ! | AGTTATTGTTAGTAGTGTTA+GGG | - | chr6_2:56451842-56451861 | Msa0920840:CDS | 25.0% |
| ! | TCTTTACAATTCTATGTTTC+TGG | - | chr6_2:56452154-56452173 | Msa0920840:CDS | 25.0% |
| !! | TAGTATTTCATGTTCCTTTT+GGG | - | chr6_2:56452202-56452221 | Msa0920840:CDS | 25.0% |
| ATTTGTATCTTCTGATGAAG+AGG | - | chr6_2:56448777-56448796 | Msa0920840:CDS | 30.0% | |
| ! | GGGTTTTTGTTAAAGGATTT+GGG | + | chr6_2:56449057-56449076 | None:intergenic | 30.0% |
| ! | TGGGTTTTTGTTAAAGGATT+TGG | + | chr6_2:56449058-56449077 | None:intergenic | 30.0% |
| ! | AAGCAGAAATTTTCGATCAA+TGG | - | chr6_2:56449258-56449277 | Msa0920840:intron | 30.0% |
| GGTTATGAGAATATGACATT+TGG | - | chr6_2:56449295-56449314 | Msa0920840:intron | 30.0% | |
| ! | GAATATGACATTTGGTGAAA+AGG | - | chr6_2:56449303-56449322 | Msa0920840:intron | 30.0% |
| !!! | TCGCTTACGAAATGTTTTTT+GGG | - | chr6_2:56449462-56449481 | Msa0920840:intron | 30.0% |
| ! | TGTTTGGAATAACCAAGTAA+AGG | + | chr6_2:56449659-56449678 | None:intergenic | 30.0% |
| TTACTTGGTTATTCCAAACA+TGG | - | chr6_2:56449659-56449678 | Msa0920840:intron | 30.0% | |
| ATCCATGAAAAATGCAATTG+CGG | - | chr6_2:56449735-56449754 | Msa0920840:CDS | 30.0% | |
| !! | AAGTATCTACTTAGCTTTTC+TGG | + | chr6_2:56449817-56449836 | None:intergenic | 30.0% |
| TTTGAGTAAGAGTGATTTCA+TGG | - | chr6_2:56449885-56449904 | Msa0920840:CDS | 30.0% | |
| ! | TCATGATAATGAATGGTTGA+AGG | - | chr6_2:56449942-56449961 | Msa0920840:intron | 30.0% |
| ! | CATGATAATGAATGGTTGAA+GGG | - | chr6_2:56449943-56449962 | Msa0920840:intron | 30.0% |
| ! | ATGATAATGAATGGTTGAAG+GGG | - | chr6_2:56449944-56449963 | Msa0920840:intron | 30.0% |
| ! | ATTCAAAGAATTTCAAGTGG+AGG | - | chr6_2:56450248-56450267 | Msa0920840:CDS | 30.0% |
| CTGTTAACTTAAGAACACAA+AGG | + | chr6_2:56450470-56450489 | None:intergenic | 30.0% | |
| CTTTGTGTTCTTAAGTTAAC+AGG | - | chr6_2:56450468-56450487 | Msa0920840:CDS | 30.0% | |
| TGAGAGAAAATATAAGAGGA+TGG | + | chr6_2:56450510-56450529 | None:intergenic | 30.0% | |
| GATCAAAACCACATTTAACA+AGG | + | chr6_2:56450563-56450582 | None:intergenic | 30.0% | |
| !!! | TGTGGTTTTGATCATTTAGT+TGG | - | chr6_2:56450570-56450589 | Msa0920840:CDS | 30.0% |
| TAAAATGAGGAATTGGATCA+AGG | - | chr6_2:56450680-56450699 | Msa0920840:intron | 30.0% | |
| ! | TTAGAAGACTTCCTTTTTGA+AGG | + | chr6_2:56450825-56450844 | None:intergenic | 30.0% |
| !!! | ACTCTGTTGACTTCTTTTTT+GGG | + | chr6_2:56450886-56450905 | None:intergenic | 30.0% |
| ACTTATCAGTGAAGTAAATC+AGG | - | chr6_2:56451239-56451258 | Msa0920840:intron | 30.0% | |
| TATTCTCAAGTCATGAATCA+TGG | - | chr6_2:56451352-56451371 | Msa0920840:intron | 30.0% | |
| ! | TATATACGATACCTTGGTTT+TGG | - | chr6_2:56451899-56451918 | Msa0920840:intron | 30.0% |
| CTAACGTTTAAGAATTGAAG+TGG | - | chr6_2:56451990-56452009 | Msa0920840:CDS | 30.0% | |
| AGAATTGAAGTGGTATAATG+AGG | - | chr6_2:56452000-56452019 | Msa0920840:CDS | 30.0% | |
| !!! | TTTCTGGTTTTATCATCTTG+TGG | - | chr6_2:56452170-56452189 | Msa0920840:CDS | 30.0% |
| ! | GAACATGAAATACTAGTTTC+TGG | + | chr6_2:56452197-56452216 | None:intergenic | 30.0% |
| ! | CTAGTATTTCATGTTCCTTT+TGG | - | chr6_2:56452201-56452220 | Msa0920840:CDS | 30.0% |
| ! | CATCAGGGTTTTCATTTAAA+TGG | - | chr6_2:56452255-56452274 | Msa0920840:CDS | 30.0% |
| TCATGAAGATGAAAAACCTC+AGG | - | chr6_2:56448852-56448871 | Msa0920840:CDS | 35.0% | |
| CTAAATATAGATCCAACCTG+AGG | + | chr6_2:56448871-56448890 | None:intergenic | 35.0% | |
| AAGAGTTATGCCCAATCTAT+GGG | - | chr6_2:56448919-56448938 | Msa0920840:intron | 35.0% | |
| AACTCCAAAACCCATAGATT+GGG | + | chr6_2:56448932-56448951 | None:intergenic | 35.0% | |
| TAACTCCAAAACCCATAGAT+TGG | + | chr6_2:56448933-56448952 | None:intergenic | 35.0% | |
| TGGATCAAAGTATGTGAGTA+AGG | - | chr6_2:56449015-56449034 | Msa0920840:intron | 35.0% | |
| ! | TTGCACTGGGTTTTTGTTAA+AGG | + | chr6_2:56449064-56449083 | None:intergenic | 35.0% |
| TTTAACAAAAACCCAGTGCA+AGG | - | chr6_2:56449063-56449082 | Msa0920840:intron | 35.0% | |
| TAAAATAGCGTGCTTTGTCA+GGG | + | chr6_2:56449168-56449187 | None:intergenic | 35.0% | |
| ! | TTTTGGATCCTCGTTTGAAA+AGG | - | chr6_2:56449200-56449219 | Msa0920840:intron | 35.0% |
| TTAGAACTCAATGATCAAGC+TGG | - | chr6_2:56449226-56449245 | Msa0920840:intron | 35.0% | |
| TCAATGGTTGTTGAAGCAAA+TGG | - | chr6_2:56449274-56449293 | Msa0920840:intron | 35.0% | |
| !!! | GTCGCTTACGAAATGTTTTT+TGG | - | chr6_2:56449461-56449480 | Msa0920840:intron | 35.0% |
| ! | AGGGCTGCATATGAATATTT+TGG | - | chr6_2:56449499-56449518 | Msa0920840:intron | 35.0% |
| ATGGTTTACTCCAACAAATG+GGG | + | chr6_2:56449581-56449600 | None:intergenic | 35.0% | |
| GATGGTTTACTCCAACAAAT+GGG | + | chr6_2:56449582-56449601 | None:intergenic | 35.0% | |
| TGATGGTTTACTCCAACAAA+TGG | + | chr6_2:56449583-56449602 | None:intergenic | 35.0% | |
| TTTGTTGGAGTAAACCATCA+TGG | - | chr6_2:56449583-56449602 | Msa0920840:CDS | 35.0% | |
| AGGATACTAAGTCCTTTACT+TGG | - | chr6_2:56449644-56449663 | Msa0920840:intron | 35.0% | |
| TGATCGGTAATTATGGCATT+TGG | + | chr6_2:56449709-56449728 | None:intergenic | 35.0% | |
| TCTGTCTTGATCGGTAATTA+TGG | + | chr6_2:56449716-56449735 | None:intergenic | 35.0% | |
| TTTCATGGATCTGTCTTGAT+CGG | + | chr6_2:56449725-56449744 | None:intergenic | 35.0% | |
| GAGTGATTTCATGGAAAAGT+TGG | - | chr6_2:56449894-56449913 | Msa0920840:CDS | 35.0% | |
| ! | ATATGTGAGAGACACGTTTT+GGG | - | chr6_2:56449999-56450018 | Msa0920840:intron | 35.0% |
| !! | AAGGAAAACAAGGCTGATTT+TGG | - | chr6_2:56450147-56450166 | Msa0920840:intron | 35.0% |
| !! | TCATACTTGCTTTGAGAGAT+TGG | - | chr6_2:56450290-56450309 | Msa0920840:CDS | 35.0% |
| CTCAAAGTCTTTCTCATTGA+AGG | + | chr6_2:56450394-56450413 | None:intergenic | 35.0% | |
| CCACTGAGAGAAAATATAAG+AGG | + | chr6_2:56450514-56450533 | None:intergenic | 35.0% | |
| ! | CCTCTTATATTTTCTCTCAG+TGG | - | chr6_2:56450511-56450530 | Msa0920840:CDS | 35.0% |
| ! | CTTATATTTTCTCTCAGTGG+AGG | - | chr6_2:56450514-56450533 | Msa0920840:CDS | 35.0% |
| AGACATACCCTTGTTAAATG+TGG | - | chr6_2:56450552-56450571 | Msa0920840:CDS | 35.0% | |
| ! | CTTTTATGAAGTTGCTTCTG+AGG | - | chr6_2:56450632-56450651 | Msa0920840:intron | 35.0% |
| !!! | CACTCTGTTGACTTCTTTTT+TGG | + | chr6_2:56450887-56450906 | None:intergenic | 35.0% |
| CAAAAAAGAAGTCAACAGAG+TGG | - | chr6_2:56450885-56450904 | Msa0920840:intron | 35.0% | |
| ! | GTTCAAGTAGTTGATGTAGT+TGG | - | chr6_2:56451022-56451041 | Msa0920840:intron | 35.0% |
| !! | TAGGGGGAACAAATTAGTTT+TGG | - | chr6_2:56451162-56451181 | Msa0920840:CDS | 35.0% |
| !!! | AGGGGGAACAAATTAGTTTT+GGG | - | chr6_2:56451163-56451182 | Msa0920840:CDS | 35.0% |
| !!! | CAAATTAGTTTTGGGAGGAA+TGG | - | chr6_2:56451171-56451190 | Msa0920840:CDS | 35.0% |
| ! | ATGTTGGTTGTTCTCTTTGT+AGG | - | chr6_2:56451466-56451485 | Msa0920840:intron | 35.0% |
| ! | GTGAAGATTGTTCTTTTGCT+CGG | - | chr6_2:56451551-56451570 | Msa0920840:intron | 35.0% |
| ! | TGAAGATTGTTCTTTTGCTC+GGG | - | chr6_2:56451552-56451571 | Msa0920840:intron | 35.0% |
| ! | ACAGCATAGACTTTTGCATT+AGG | - | chr6_2:56451803-56451822 | Msa0920840:CDS | 35.0% |
| ! | CAGCATAGACTTTTGCATTA+GGG | - | chr6_2:56451804-56451823 | Msa0920840:CDS | 35.0% |
| ! | AGCATAGACTTTTGCATTAG+GGG | - | chr6_2:56451805-56451824 | Msa0920840:CDS | 35.0% |
| !! | ACCAAGGTATCGTATATATG+CGG | + | chr6_2:56451897-56451916 | None:intergenic | 35.0% |
| ACACATGAAAACCAAAACCA+AGG | + | chr6_2:56451913-56451932 | None:intergenic | 35.0% | |
| !!! | TGGTTTTGGTTTTCATGTGT+TGG | - | chr6_2:56451913-56451932 | Msa0920840:CDS | 35.0% |
| TCGATGAAATTTGTCTTCAC+AGG | - | chr6_2:56452038-56452057 | Msa0920840:CDS | 35.0% | |
| CGATGAAATTTGTCTTCACA+GGG | - | chr6_2:56452039-56452058 | Msa0920840:CDS | 35.0% | |
| TATGTAAGGCTGCATTGTAA+GGG | - | chr6_2:56452085-56452104 | Msa0920840:intron | 35.0% | |
| TGATGAAGAGGAAATCAGAG+AGG | - | chr6_2:56448789-56448808 | Msa0920840:CDS | 40.0% | |
| GATGAAGAGGAAATCAGAGA+GGG | - | chr6_2:56448790-56448809 | Msa0920840:CDS | 40.0% | |
| GAAGATGAAAAACCTCAGGT+TGG | - | chr6_2:56448856-56448875 | Msa0920840:CDS | 40.0% | |
| CAAGAGTTATGCCCAATCTA+TGG | - | chr6_2:56448918-56448937 | Msa0920840:intron | 40.0% | |
| ! | TATGCCCAATCTATGGGTTT+TGG | - | chr6_2:56448925-56448944 | Msa0920840:intron | 40.0% |
| TTTACTCTAGCATGTAGTCG+TGG | - | chr6_2:56448995-56449014 | Msa0920840:intron | 40.0% | |
| !! | ATTCAATCTAGCCTTGCACT+GGG | + | chr6_2:56449077-56449096 | None:intergenic | 40.0% |
| CTAAAATAGCGTGCTTTGTC+AGG | + | chr6_2:56449169-56449188 | None:intergenic | 40.0% | |
| ! | TCTAACCTCCTTTTCAAACG+AGG | + | chr6_2:56449211-56449230 | None:intergenic | 40.0% |
| ! | TTGTGCTTTATTGTCGAAGG+AGG | - | chr6_2:56449624-56449643 | Msa0920840:intron | 40.0% |
| ! | AGCCGCAATTGCATTTTTCA+TGG | + | chr6_2:56449740-56449759 | None:intergenic | 40.0% |
| ! | CATATGTGAGAGACACGTTT+TGG | - | chr6_2:56449998-56450017 | Msa0920840:intron | 40.0% |
| ! | TTGCATTGGTGAATGCTTTC+TGG | + | chr6_2:56450227-56450246 | None:intergenic | 40.0% |
| !! | ACTTGCTTTGAGAGATTGGA+AGG | - | chr6_2:56450294-56450313 | Msa0920840:CDS | 40.0% |
| ! | TATTTTCTCTCAGTGGAGGA+AGG | - | chr6_2:56450518-56450537 | Msa0920840:CDS | 40.0% |
| CTTTACTTCGAGTCGGTATA+GGG | + | chr6_2:56450794-56450813 | None:intergenic | 40.0% | |
| !! | CTATACCGACTCGAAGTAAA+GGG | - | chr6_2:56450793-56450812 | Msa0920840:intron | 40.0% |
| !! | GAAGACTTCCTTTTTGAAGG+AGG | + | chr6_2:56450822-56450841 | None:intergenic | 40.0% |
| ACAGAGTGGATATCAACAAG+AGG | - | chr6_2:56450899-56450918 | Msa0920840:intron | 40.0% | |
| CTTGTACTTTAGATGCACAC+AGG | + | chr6_2:56450997-56451016 | None:intergenic | 40.0% | |
| !!! | GGGAACAAATTAGTTTTGGG+AGG | - | chr6_2:56451166-56451185 | Msa0920840:CDS | 40.0% |
| ! | TTTCGTGCTTTTCCTTTGCT+AGG | - | chr6_2:56451605-56451624 | Msa0920840:intron | 40.0% |
| ! | TTCGTGCTTTTCCTTTGCTA+GGG | - | chr6_2:56451606-56451625 | Msa0920840:intron | 40.0% |
| !!! | ATGTGCTGGACTTTTGGTTT+GGG | - | chr6_2:56451651-56451670 | Msa0920840:intron | 40.0% |
| ACTTAAAACCTTTGCTGCCA+AGG | + | chr6_2:56451688-56451707 | None:intergenic | 40.0% | |
| !!! | GCAGCAAAGGTTTTAAGTCT+GGG | - | chr6_2:56451690-56451709 | Msa0920840:CDS | 40.0% |
| !!! | CAGCAAAGGTTTTAAGTCTG+GGG | - | chr6_2:56451691-56451710 | Msa0920840:CDS | 40.0% |
| !!! | AGCAAAGGTTTTAAGTCTGG+GGG | - | chr6_2:56451692-56451711 | Msa0920840:CDS | 40.0% |
| ! | GTCAAGTGCTTGACAAGTTT+TGG | - | chr6_2:56451728-56451747 | Msa0920840:CDS | 40.0% |
| !!! | GTGCTTGACAAGTTTTGGTT+TGG | - | chr6_2:56451733-56451752 | Msa0920840:CDS | 40.0% |
| AAAACCTGTCAAGCACATGA+CGG | + | chr6_2:56451759-56451778 | None:intergenic | 40.0% | |
| AAAAGTCTATGCTGTCAAGG+AGG | + | chr6_2:56451798-56451817 | None:intergenic | 40.0% | |
| TGCAAAAGTCTATGCTGTCA+AGG | + | chr6_2:56451801-56451820 | None:intergenic | 40.0% | |
| ! | GCATAGACTTTTGCATTAGG+GGG | - | chr6_2:56451806-56451825 | Msa0920840:CDS | 40.0% |
| GTGTTAGGGTGTATTCTGTT+TGG | - | chr6_2:56451856-56451875 | Msa0920840:CDS | 40.0% | |
| CGTATATATGCGGCTACAAT+GGG | + | chr6_2:56451887-56451906 | None:intergenic | 40.0% | |
| TCGTATATATGCGGCTACAA+TGG | + | chr6_2:56451888-56451907 | None:intergenic | 40.0% | |
| AAGACGTAATAGTTGTGGCT+AGG | + | chr6_2:56451942-56451961 | None:intergenic | 40.0% | |
| CGTACAAGACGTAATAGTTG+TGG | + | chr6_2:56451947-56451966 | None:intergenic | 40.0% | |
| CTATGTAAGGCTGCATTGTA+AGG | - | chr6_2:56452084-56452103 | Msa0920840:intron | 40.0% | |
| TCATGCTACATGTTGAAGCT+TGG | - | chr6_2:56452109-56452128 | Msa0920840:CDS | 40.0% | |
| ACATGTTGAAGCTTGGCATA+AGG | - | chr6_2:56452116-56452135 | Msa0920840:CDS | 40.0% | |
| TCTAGCTGACAACAATTTGC+AGG | + | chr6_2:56452228-56452247 | None:intergenic | 40.0% | |
| ! | TCAGCTAGAACTTGTTCATC+AGG | - | chr6_2:56452239-56452258 | Msa0920840:CDS | 40.0% |
| ! | CAGCTAGAACTTGTTCATCA+GGG | - | chr6_2:56452240-56452259 | Msa0920840:CDS | 40.0% |
| AAGATTTCAAAAGGGAAGCC+TGG | - | chr6_2:56452294-56452313 | Msa0920840:CDS | 40.0% | |
| !! | CATTCAATCTAGCCTTGCAC+TGG | + | chr6_2:56449078-56449097 | None:intergenic | 45.0% |
| TGGATCCTCGTTTGAAAAGG+AGG | - | chr6_2:56449203-56449222 | Msa0920840:intron | 45.0% | |
| AAAGTGAGGAGACTACCACT+TGG | - | chr6_2:56449346-56449365 | Msa0920840:CDS | 45.0% | |
| AAGTGAGGAGACTACCACTT+GGG | - | chr6_2:56449347-56449366 | Msa0920840:CDS | 45.0% | |
| ! | ATGCCTTTTGCCCCATTTGT+TGG | - | chr6_2:56449568-56449587 | Msa0920840:intron | 45.0% |
| ACTCCAACAAATGGGGCAAA+AGG | + | chr6_2:56449574-56449593 | None:intergenic | 45.0% | |
| ! | ACAACACAGATTGGCCATGA+TGG | + | chr6_2:56449600-56449619 | None:intergenic | 45.0% |
| TCATGGCCAATCTGTGTTGT+TGG | - | chr6_2:56449600-56449619 | Msa0920840:intron | 45.0% | |
| ! | CATGGCCAATCTGTGTTGTT+GGG | - | chr6_2:56449601-56449620 | Msa0920840:intron | 45.0% |
| CACAACCCAACAACACAGAT+TGG | + | chr6_2:56449609-56449628 | None:intergenic | 45.0% | |
| ! | GGGTTGTGCTTTATTGTCGA+AGG | - | chr6_2:56449621-56449640 | Msa0920840:intron | 45.0% |
| GCATGCACTCTAACCATGTT+TGG | + | chr6_2:56449675-56449694 | None:intergenic | 45.0% | |
| ACATGGTTAGAGTGCATGCA+TGG | - | chr6_2:56449676-56449695 | Msa0920840:intron | 45.0% | |
| ! | ACCATCGATGACGAGCTTTT+GGG | + | chr6_2:56449768-56449787 | None:intergenic | 45.0% |
| AACGTGTCTCTCACATATGC+AGG | + | chr6_2:56449997-56450016 | None:intergenic | 45.0% | |
| !! | ACATCTAAAGAAGCATCCCC+TGG | - | chr6_2:56450720-56450739 | Msa0920840:intron | 45.0% |
| AACCATCTTCCACAATGCCA+GGG | + | chr6_2:56450740-56450759 | None:intergenic | 45.0% | |
| CCTTTACTTCGAGTCGGTAT+AGG | + | chr6_2:56450795-56450814 | None:intergenic | 45.0% | |
| !! | CCTATACCGACTCGAAGTAA+AGG | - | chr6_2:56450792-56450811 | Msa0920840:intron | 45.0% |
| !!! | AGTTTTGGGAGGAATGGACA+TGG | - | chr6_2:56451177-56451196 | Msa0920840:CDS | 45.0% |
| !! | CGTGTTATTGATGACGACGA+CGG | + | chr6_2:56451512-56451531 | None:intergenic | 45.0% |
| !! | CATGTGCTGGACTTTTGGTT+TGG | - | chr6_2:56451650-56451669 | Msa0920840:intron | 45.0% |
| !!! | GACTTTTGGTTTGGGCTTGT+TGG | - | chr6_2:56451659-56451678 | Msa0920840:intron | 45.0% |
| TAAAACCTTTGCTGCCAAGG+AGG | + | chr6_2:56451685-56451704 | None:intergenic | 45.0% | |
| !!! | GGCAGCAAAGGTTTTAAGTC+TGG | - | chr6_2:56451689-56451708 | Msa0920840:CDS | 45.0% |
| ! | GTCATGTGCTTGACAGGTTT+TGG | - | chr6_2:56451758-56451777 | Msa0920840:CDS | 45.0% |
| !! | TGCTTGACAGGTTTTGGTCT+GGG | - | chr6_2:56451764-56451783 | Msa0920840:CDS | 45.0% |
| GCCGCATATATACGATACCT+TGG | - | chr6_2:56451893-56451912 | Msa0920840:intron | 45.0% | |
| CAACAATTTGCAGGCCCAAA+AGG | + | chr6_2:56452219-56452238 | None:intergenic | 45.0% | |
| AGTGAGGAGACTACCACTTG+GGG | - | chr6_2:56449348-56449367 | Msa0920840:CDS | 50.0% | |
| TTTGGGCAGATGCGAGATGT+AGG | - | chr6_2:56449479-56449498 | Msa0920840:intron | 50.0% | |
| TTGGGCAGATGCGAGATGTA+GGG | - | chr6_2:56449480-56449499 | Msa0920840:intron | 50.0% | |
| TCCCAAAAGCTCGTCATCGA+TGG | - | chr6_2:56449764-56449783 | Msa0920840:intron | 50.0% | |
| ! | CACCATCGATGACGAGCTTT+TGG | + | chr6_2:56449769-56449788 | None:intergenic | 50.0% |
| CTCGTCATCGATGGTGTTTG+TGG | - | chr6_2:56449773-56449792 | Msa0920840:intron | 50.0% | |
| !! | TGTGAGAGACACGTTTTGGG+CGG | - | chr6_2:56450002-56450021 | Msa0920840:intron | 50.0% |
| ACCATCTTCCACAATGCCAG+GGG | + | chr6_2:56450739-56450758 | None:intergenic | 50.0% | |
| GAACCATCTTCCACAATGCC+AGG | + | chr6_2:56450741-56450760 | None:intergenic | 50.0% | |
| !! | AAGGGCGTCCTCCTTCAAAA+AGG | - | chr6_2:56450811-56450830 | Msa0920840:intron | 50.0% |
| TTTGGGAGGAATGGACATGG+TGG | - | chr6_2:56451180-56451199 | Msa0920840:CDS | 50.0% | |
| ACGACGACGGATCATTCACA+TGG | + | chr6_2:56451499-56451518 | None:intergenic | 50.0% | |
| ! | GCTGTCATGTGCTGGACTTT+TGG | - | chr6_2:56451645-56451664 | Msa0920840:intron | 50.0% |
| !! | GTGCTTGACAGGTTTTGGTC+TGG | - | chr6_2:56451763-56451782 | Msa0920840:CDS | 50.0% |
| !!! | AGGTTTTGGTCTGGGCTAGT+TGG | - | chr6_2:56451772-56451791 | Msa0920840:CDS | 50.0% |
| !! | GTGAGAGACACGTTTTGGGC+GGG | - | chr6_2:56450003-56450022 | Msa0920840:intron | 55.0% |
| !! | AGAAGCATCCCCTGGCATTG+TGG | - | chr6_2:56450728-56450747 | Msa0920840:intron | 55.0% |
| TCCCCTGGCATTGTGGAAGA+TGG | - | chr6_2:56450735-56450754 | Msa0920840:intron | 55.0% | |
| GGACGCCCTTTACTTCGAGT+CGG | + | chr6_2:56450801-56450820 | None:intergenic | 55.0% | |
| !! | TTTGGGCTTGTTGGCCTCCT+TGG | - | chr6_2:56451668-56451687 | Msa0920840:CDS | 55.0% |
| TTGGCCGTCATGTGCTTGAC+AGG | - | chr6_2:56451752-56451771 | Msa0920840:CDS | 55.0% | |
| AGGAGACTACCACTTGGGGC+TGG | - | chr6_2:56449352-56449371 | Msa0920840:CDS | 60.0% | |
| TCAGCATCTCCAGCCCCAAG+TGG | + | chr6_2:56449364-56449383 | None:intergenic | 60.0% | |
| ACTTGGGGCTGGAGATGCTG+AGG | - | chr6_2:56449363-56449382 | Msa0920840:CDS | 60.0% | |
| CAGCAGCAGTGCCCTAGCAA+AGG | + | chr6_2:56451620-56451639 | None:intergenic | 60.0% | |
| CTGCTGCTGCTGTCATGTGC+TGG | - | chr6_2:56451637-56451656 | Msa0920840:intron | 60.0% | |
| ! | GTTGGCCTCCTTGGCAGCAA+AGG | - | chr6_2:56451677-56451696 | Msa0920840:CDS | 60.0% |
| ! | TCGGGCACTGCTGCTGCGTT+AGG | - | chr6_2:56451570-56451589 | Msa0920840:intron | 65.0% |
| GGCACTGCTGCTGCGTTAGG+TGG | - | chr6_2:56451573-56451592 | Msa0920840:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 56448769 | 56452332 | 56448769 | ID=Msa0920840;Name=Msa0920840 |
| chr6_2 | mRNA | 56448769 | 56452332 | 56448769 | ID=Msa0920840-mRNA-1;Parent=Msa0920840;Name=Msa0920840-mRNA-1;_AED=0.31;_eAED=0.41;_QI=0|0.33|0.23|0.92|0.5|0.30|13|0|579 |
| chr6_2 | exon | 56452094 | 56452332 | 56452094 | ID=Msa0920840-mRNA-1:exon:8480;Parent=Msa0920840-mRNA-1 |
| chr6_2 | exon | 56451904 | 56452089 | 56451904 | ID=Msa0920840-mRNA-1:exon:8479;Parent=Msa0920840-mRNA-1 |
| chr6_2 | exon | 56451663 | 56451876 | 56451663 | ID=Msa0920840-mRNA-1:exon:8478;Parent=Msa0920840-mRNA-1 |
| chr6_2 | exon | 56451050 | 56451206 | 56451050 | ID=Msa0920840-mRNA-1:exon:8477;Parent=Msa0920840-mRNA-1 |
| chr6_2 | exon | 56450448 | 56450611 | 56450448 | ID=Msa0920840-mRNA-1:exon:8476;Parent=Msa0920840-mRNA-1 |
| chr6_2 | exon | 56450181 | 56450399 | 56450181 | ID=Msa0920840-mRNA-1:exon:8475;Parent=Msa0920840-mRNA-1 |
| chr6_2 | exon | 56450038 | 56450109 | 56450038 | ID=Msa0920840-mRNA-1:exon:8474;Parent=Msa0920840-mRNA-1 |
| chr6_2 | exon | 56449841 | 56449936 | 56449841 | ID=Msa0920840-mRNA-1:exon:8473;Parent=Msa0920840-mRNA-1 |
| chr6_2 | exon | 56449702 | 56449758 | 56449702 | ID=Msa0920840-mRNA-1:exon:8472;Parent=Msa0920840-mRNA-1 |
| chr6_2 | exon | 56449571 | 56449613 | 56449571 | ID=Msa0920840-mRNA-1:exon:8471;Parent=Msa0920840-mRNA-1 |
| chr6_2 | exon | 56449328 | 56449474 | 56449328 | ID=Msa0920840-mRNA-1:exon:8470;Parent=Msa0920840-mRNA-1 |
| chr6_2 | exon | 56449001 | 56449008 | 56449001 | ID=Msa0920840-mRNA-1:exon:8469;Parent=Msa0920840-mRNA-1 |
| chr6_2 | exon | 56448769 | 56448903 | 56448769 | ID=Msa0920840-mRNA-1:exon:8468;Parent=Msa0920840-mRNA-1 |
| chr6_2 | CDS | 56452094 | 56452332 | 56452094 | ID=Msa0920840-mRNA-1:cds;Parent=Msa0920840-mRNA-1 |
| chr6_2 | CDS | 56451904 | 56452089 | 56451904 | ID=Msa0920840-mRNA-1:cds;Parent=Msa0920840-mRNA-1 |
| chr6_2 | CDS | 56451663 | 56451876 | 56451663 | ID=Msa0920840-mRNA-1:cds;Parent=Msa0920840-mRNA-1 |
| chr6_2 | CDS | 56451050 | 56451206 | 56451050 | ID=Msa0920840-mRNA-1:cds;Parent=Msa0920840-mRNA-1 |
| chr6_2 | CDS | 56450448 | 56450611 | 56450448 | ID=Msa0920840-mRNA-1:cds;Parent=Msa0920840-mRNA-1 |
| chr6_2 | CDS | 56450181 | 56450399 | 56450181 | ID=Msa0920840-mRNA-1:cds;Parent=Msa0920840-mRNA-1 |
| chr6_2 | CDS | 56450038 | 56450109 | 56450038 | ID=Msa0920840-mRNA-1:cds;Parent=Msa0920840-mRNA-1 |
| chr6_2 | CDS | 56449841 | 56449936 | 56449841 | ID=Msa0920840-mRNA-1:cds;Parent=Msa0920840-mRNA-1 |
| chr6_2 | CDS | 56449702 | 56449758 | 56449702 | ID=Msa0920840-mRNA-1:cds;Parent=Msa0920840-mRNA-1 |
| chr6_2 | CDS | 56449571 | 56449613 | 56449571 | ID=Msa0920840-mRNA-1:cds;Parent=Msa0920840-mRNA-1 |
| chr6_2 | CDS | 56449328 | 56449474 | 56449328 | ID=Msa0920840-mRNA-1:cds;Parent=Msa0920840-mRNA-1 |
| chr6_2 | CDS | 56449001 | 56449008 | 56449001 | ID=Msa0920840-mRNA-1:cds;Parent=Msa0920840-mRNA-1 |
| chr6_2 | CDS | 56448769 | 56448903 | 56448769 | ID=Msa0920840-mRNA-1:cds;Parent=Msa0920840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
