Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0922420 | XP_039682605.1 | 94.464 | 289 | 5 | 1 | 1 | 278 | 1 | 289 | 0.0 | 558 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0922420 | sp|Q9SKD0|BPC1_ARATH | 47.841 | 301 | 116 | 11 | 1 | 278 | 1 | 283 | 6.20e-83 | 253 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0922420 | TF | BBR-BPC |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0922420 | MtrunA17_Chr6g0479911 | 94.464 | 289 | 5 | 1 | 1 | 278 | 1 | 289 | 0.0 | 558 |
| Msa0922420 | MtrunA17_Chr8g0375531 | 48.797 | 291 | 120 | 11 | 4 | 278 | 3 | 280 | 7.96e-71 | 219 |
| Msa0922420 | MtrunA17_Chr1g0156031 | 48.246 | 114 | 48 | 1 | 176 | 278 | 227 | 340 | 2.32e-36 | 132 |
| Msa0922420 | MtrunA17_Chr8g0385961 | 29.482 | 251 | 155 | 5 | 48 | 278 | 64 | 312 | 3.89e-36 | 131 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0922420 | AT2G01930.2 | 47.841 | 301 | 116 | 11 | 1 | 278 | 1 | 283 | 6.31e-84 | 253 |
| Msa0922420 | AT2G01930.1 | 47.841 | 301 | 116 | 11 | 1 | 278 | 1 | 283 | 6.31e-84 | 253 |
| Msa0922420 | AT1G14685.1 | 47.458 | 295 | 122 | 9 | 1 | 278 | 1 | 279 | 4.33e-77 | 236 |
| Msa0922420 | AT1G14685.4 | 47.458 | 295 | 122 | 9 | 1 | 278 | 1 | 279 | 4.33e-77 | 236 |
| Msa0922420 | AT1G14685.3 | 47.458 | 295 | 122 | 9 | 1 | 278 | 1 | 279 | 4.33e-77 | 236 |
| Msa0922420 | AT1G14685.2 | 47.458 | 295 | 122 | 9 | 1 | 278 | 1 | 279 | 4.33e-77 | 236 |
| Msa0922420 | AT1G68120.1 | 43.051 | 295 | 120 | 11 | 4 | 278 | 3 | 269 | 1.18e-65 | 206 |
| Msa0922420 | AT2G35550.2 | 47.619 | 147 | 64 | 3 | 143 | 278 | 82 | 226 | 2.10e-39 | 137 |
| Msa0922420 | AT2G35550.4 | 47.619 | 147 | 64 | 3 | 143 | 278 | 82 | 226 | 2.10e-39 | 137 |
| Msa0922420 | AT2G35550.3 | 47.619 | 147 | 64 | 3 | 143 | 278 | 82 | 226 | 2.10e-39 | 137 |
| Msa0922420 | AT2G35550.1 | 47.619 | 147 | 64 | 3 | 143 | 278 | 127 | 271 | 2.16e-39 | 139 |
| Msa0922420 | AT2G21240.1 | 29.811 | 265 | 160 | 6 | 28 | 278 | 44 | 296 | 1.74e-35 | 129 |
| Msa0922420 | AT2G21240.2 | 29.811 | 265 | 160 | 6 | 28 | 278 | 44 | 296 | 1.74e-35 | 129 |
| Msa0922420 | AT4G38910.1 | 38.406 | 138 | 73 | 2 | 152 | 278 | 122 | 258 | 4.70e-33 | 122 |
| Msa0922420 | AT4G38910.2 | 37.857 | 140 | 75 | 2 | 150 | 278 | 145 | 283 | 6.73e-33 | 122 |
| Msa0922420 | AT5G42520.3 | 48.598 | 107 | 43 | 2 | 184 | 278 | 176 | 282 | 7.87e-33 | 122 |
| Msa0922420 | AT5G42520.2 | 48.598 | 107 | 43 | 2 | 184 | 278 | 232 | 338 | 9.42e-33 | 123 |
| Msa0922420 | AT5G42520.1 | 48.598 | 107 | 43 | 2 | 184 | 278 | 236 | 342 | 1.20e-32 | 122 |
Find 93 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATATCACCATCGGGAAAT+TGG | 0.178341 | 6_2:+60980653 | Msa0922420:CDS |
| CGATAGATTTGAGGACTTAT+TGG | 0.234611 | 6_2:+60981402 | Msa0922420:CDS |
| TGCAATTAACGGGATTGATT+TGG | 0.279573 | 6_2:+60981045 | Msa0922420:CDS |
| GATAGATTTGAGGACTTATT+GGG | 0.312732 | 6_2:+60981403 | Msa0922420:CDS |
| CCAACAAGTTTGTTACTATC+AGG | 0.343708 | 6_2:+60981438 | Msa0922420:CDS |
| ATTCCTGTTTGTTCTTGCAC+TGG | 0.347046 | 6_2:+60981085 | Msa0922420:CDS |
| CACCTCAACAATGTTATAGA+TGG | 0.355446 | 6_2:+60981110 | Msa0922420:CDS |
| ATGGACTTAACATAAGCAAT+TGG | 0.360767 | 6_2:+60980507 | Msa0922420:CDS |
| CCGGAAAAGCCGCCTTTGAT+TGG | 0.380482 | 6_2:+60980593 | Msa0922420:CDS |
| TTTCTAATCCGATAGATTTG+AGG | 0.399273 | 6_2:+60981393 | Msa0922420:CDS |
| CTTACCCTATGGATTATATG+AGG | 0.406292 | 6_2:+60980690 | Msa0922420:CDS |
| AATGATTCGACCATGTGAAT+TGG | 0.408906 | 6_2:+60980829 | Msa0922420:CDS |
| CATATCACCATCGGGAAATT+GGG | 0.409037 | 6_2:+60980654 | Msa0922420:CDS |
| CGAAATGCTGCGGTTATGTC+GGG | 0.411374 | 6_2:+60980620 | Msa0922420:CDS |
| TGGACTTAACATAAGCAATT+GGG | 0.420997 | 6_2:+60980508 | Msa0922420:CDS |
| CTACGGAAATTGCAATTAAC+GGG | 0.422090 | 6_2:+60981035 | Msa0922420:CDS |
| TTAGGAGACTTCGGCACCTT+CGG | 0.426454 | 6_2:-60980926 | None:intergenic |
| TCGACCATGTGAATTGGTTA+AGG | 0.427145 | 6_2:+60980835 | Msa0922420:CDS |
| ACTACGGAAATTGCAATTAA+CGG | 0.434305 | 6_2:+60981034 | Msa0922420:CDS |
| CCTGATAGTAACAAACTTGT+TGG | 0.444146 | 6_2:-60981438 | None:intergenic |
| CTATAACCTGGAGGGTTAGT+AGG | 0.446214 | 6_2:-60980767 | None:intergenic |
| TGATTCTTAAATGATGAAAC+AGG | 0.446858 | 6_2:-60980542 | None:intergenic |
| GCCTCAAACTACTTACCCTA+TGG | 0.455211 | 6_2:+60980679 | Msa0922420:CDS |
| CTCTTCGGCTTCTTTGCCTT+AGG | 0.455380 | 6_2:-60980944 | None:intergenic |
| TCGAAATGCTGCGGTTATGT+CGG | 0.458215 | 6_2:+60980619 | Msa0922420:CDS |
| ACCACAGGTGCTTCCTCCAT+TGG | 0.459398 | 6_2:-60980866 | None:intergenic |
| TAATTTAGTGTTGTAATGGA+TGG | 0.462352 | 6_2:+60980479 | None:intergenic |
| ATAGATGGGGCTCGGGTGGA+TGG | 0.464652 | 6_2:+60981125 | Msa0922420:CDS |
| TTCCTGTTTGTTCTTGCACT+GGG | 0.468493 | 6_2:+60981086 | Msa0922420:CDS |
| GTTGTAATGGATGGAGATAA+TGG | 0.478647 | 6_2:+60980488 | None:intergenic |
| ACAATGTTATAGATGGGGCT+CGG | 0.487220 | 6_2:+60981117 | Msa0922420:CDS |
| GGCACACGAGGTCCTCTCTT+CGG | 0.493154 | 6_2:-60980959 | None:intergenic |
| CCATTCACCTTCTCGACCAC+AGG | 0.494618 | 6_2:-60980881 | None:intergenic |
| ACAACTGATGCCATCGATGC+CGG | 0.499881 | 6_2:+60980574 | Msa0922420:CDS |
| TTCTTTGCCTTAGGAGACTT+CGG | 0.501514 | 6_2:-60980935 | None:intergenic |
| GTCCCAGTGCAAGAACAAAC+AGG | 0.501675 | 6_2:-60981088 | None:intergenic |
| GTGCAAGAACAAACAGGAAT+CGG | 0.503075 | 6_2:-60981082 | None:intergenic |
| GAAGGAGAATTCTCGTCCTT+CGG | 0.503811 | 6_2:-60980980 | None:intergenic |
| CAATGTTATAGATGGGGCTC+GGG | 0.507375 | 6_2:+60981118 | Msa0922420:CDS |
| CCTGTGGTCGAGAAGGTGAA+TGG | 0.509475 | 6_2:+60980881 | Msa0922420:CDS |
| ACCTCAACAATGTTATAGAT+GGG | 0.523017 | 6_2:+60981111 | Msa0922420:CDS |
| ATGATGAGCTGAAGATGTCT+CGG | 0.523848 | 6_2:-60980801 | None:intergenic |
| CAATAAGTCCTCAAATCTAT+CGG | 0.528692 | 6_2:-60981401 | None:intergenic |
| GCATCCCTCATATAATCCAT+AGG | 0.528771 | 6_2:-60980695 | None:intergenic |
| GTCGAGAAGGTGAATGGAAC+TGG | 0.530658 | 6_2:+60980887 | Msa0922420:CDS |
| GAAGGACGAGAATTCTCCTT+CGG | 0.531353 | 6_2:+60980982 | Msa0922420:CDS |
| CTTGGTGTTCGTTGAACCGA+AGG | 0.532361 | 6_2:-60980998 | None:intergenic |
| TCCATAGGGTAAGTAGTTTG+AGG | 0.540334 | 6_2:-60980680 | None:intergenic |
| TGTTATAGATGGGGCTCGGG+TGG | 0.542239 | 6_2:+60981121 | Msa0922420:CDS |
| GCATTTCGACTTCCAATCAA+AGG | 0.543040 | 6_2:-60980605 | None:intergenic |
| TCATCATTTAAGAATCATCT+CGG | 0.544378 | 6_2:+60980548 | Msa0922420:CDS |
| TTCTCGTCCTTCGGCACACG+AGG | 0.552572 | 6_2:-60980971 | None:intergenic |
| TAACGGTGCATATCACCATC+GGG | 0.558932 | 6_2:+60980646 | Msa0922420:CDS |
| CATCCCTCATATAATCCATA+GGG | 0.559663 | 6_2:-60980694 | None:intergenic |
| ATTAGAAAAGTTATAACCCT+CGG | 0.560267 | 6_2:-60981378 | None:intergenic |
| AGGACTTATTGGGCAAAACA+TGG | 0.561945 | 6_2:+60981413 | Msa0922420:CDS |
| ATGATACCTACTAACCCTCC+AGG | 0.562585 | 6_2:+60980761 | Msa0922420:CDS |
| GCGGTTATGTCGGGAACTAA+CGG | 0.570883 | 6_2:+60980629 | Msa0922420:CDS |
| GAGAGGACCTCGTGTGCCGA+AGG | 0.571472 | 6_2:+60980964 | Msa0922420:CDS |
| TGGATTATATGAGGGATGCA+TGG | 0.575577 | 6_2:+60980699 | Msa0922420:CDS |
| TGATGAGCTGAAGATGTCTC+GGG | 0.579222 | 6_2:-60980800 | None:intergenic |
| GGAAGCACCTGTGGTCGAGA+AGG | 0.588134 | 6_2:+60980874 | Msa0922420:CDS |
| GAAGGTGCCGAAGTCTCCTA+AGG | 0.590939 | 6_2:+60980928 | Msa0922420:CDS |
| ATTAGAGAAACATGCAGCCG+AGG | 0.591281 | 6_2:+60981361 | Msa0922420:CDS |
| TTACCCTATGGATTATATGA+GGG | 0.595783 | 6_2:+60980691 | Msa0922420:CDS |
| GGACTTAACATAAGCAATTG+GGG | 0.601047 | 6_2:+60980509 | Msa0922420:CDS |
| TTCGGTTCAACGAACACCAA+GGG | 0.601561 | 6_2:+60981000 | Msa0922420:CDS |
| CAAGTTTGTTACTATCAGGT+AGG | 0.604667 | 6_2:+60981442 | Msa0922420:CDS |
| GCCAATGGAGGAAGCACCTG+TGG | 0.607095 | 6_2:+60980865 | Msa0922420:CDS |
| CTAACGGTGCATATCACCAT+CGG | 0.608113 | 6_2:+60980645 | Msa0922420:CDS |
| AAGGGCACAAAAGAAAACTA+CGG | 0.609634 | 6_2:+60981018 | Msa0922420:CDS |
| CGTTTAGTACTCATAGGCAA+AGG | 0.610952 | 6_2:-60981184 | None:intergenic |
| ATGCATGGATTAGTAGTCAG+AGG | 0.611474 | 6_2:+60980714 | Msa0922420:CDS |
| TTAGAGAAACATGCAGCCGA+GGG | 0.614465 | 6_2:+60981362 | Msa0922420:CDS |
| GAGGCATCCCAATTTCCCGA+TGG | 0.615246 | 6_2:-60980661 | None:intergenic |
| AAGGCAAAGAAGCCGAAGAG+AGG | 0.622231 | 6_2:+60980947 | Msa0922420:CDS |
| CCCCATCTATAACATTGTTG+AGG | 0.623582 | 6_2:-60981112 | None:intergenic |
| TAAGAAGAGGCAAGGACCGA+AGG | 0.629324 | 6_2:+60980910 | Msa0922420:CDS |
| TACTAGTACTATAACCTGGA+GGG | 0.630649 | 6_2:-60980775 | None:intergenic |
| GGAATACTAGTACTATAACC+TGG | 0.630941 | 6_2:-60980779 | None:intergenic |
| TCTTCCTTAACCAATTCACA+TGG | 0.638004 | 6_2:-60980839 | None:intergenic |
| GGTTAAGGAAGAAATGCCAA+TGG | 0.642003 | 6_2:+60980850 | Msa0922420:CDS |
| TTTCGACTTCCAATCAAAGG+CGG | 0.642330 | 6_2:-60980602 | None:intergenic |
| TGCATGGATTAGTAGTCAGA+GGG | 0.642777 | 6_2:+60980715 | Msa0922420:CDS |
| TGAATGGAACTGGTAAGAAG+AGG | 0.650068 | 6_2:+60980897 | Msa0922420:CDS |
| GGAACTGGTAAGAAGAGGCA+AGG | 0.651851 | 6_2:+60980902 | Msa0922420:CDS |
| GATTGGAAGTCGAAATGCTG+CGG | 0.656562 | 6_2:+60980610 | Msa0922420:CDS |
| CCTCAACAATGTTATAGATG+GGG | 0.670226 | 6_2:+60981112 | Msa0922420:CDS |
| TAAGGAAGAAATGCCAATGG+AGG | 0.676077 | 6_2:+60980853 | Msa0922420:CDS |
| CTTCGGTTCAACGAACACCA+AGG | 0.677515 | 6_2:+60980999 | Msa0922420:CDS |
| ATACTAGTACTATAACCTGG+AGG | 0.700408 | 6_2:-60980776 | None:intergenic |
| GCAGTCTGCATGCTGCACAA+CGG | 0.723033 | 6_2:+60981147 | Msa0922420:CDS |
| CCTATGAGTACTAAACGACG+CGG | 0.777544 | 6_2:+60981190 | Msa0922420:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | NNNNNNAGGAAAATGAGTAT+AGG | + | chr6_2:60981323-60981342 | Msa0922420:intron | 20.0% |
| !! | NNNNNNAGGAAAATGAGTAT+AGG | + | chr6_2:60981323-60981342 | Msa0922420:intron | 20.0% |
| ! | TGATTCTTAAATGATGAAAC+AGG | - | chr6_2:60980545-60980564 | None:intergenic | 25.0% |
| ! | TCATCATTTAAGAATCATCT+CGG | + | chr6_2:60980548-60980567 | Msa0922420:CDS | 25.0% |
| ! | ATTAGAAAAGTTATAACCCT+CGG | - | chr6_2:60981381-60981400 | None:intergenic | 25.0% |
| ! | TGATTCTTAAATGATGAAAC+AGG | - | chr6_2:60980545-60980564 | None:intergenic | 25.0% |
| ! | TCATCATTTAAGAATCATCT+CGG | + | chr6_2:60980548-60980567 | Msa0922420:CDS | 25.0% |
| ! | ATTAGAAAAGTTATAACCCT+CGG | - | chr6_2:60981381-60981400 | None:intergenic | 25.0% |
| ATGGACTTAACATAAGCAAT+TGG | + | chr6_2:60980507-60980526 | Msa0922420:CDS | 30.0% | |
| TGGACTTAACATAAGCAATT+GGG | + | chr6_2:60980508-60980527 | Msa0922420:CDS | 30.0% | |
| ! | TTACCCTATGGATTATATGA+GGG | + | chr6_2:60980691-60980710 | Msa0922420:CDS | 30.0% |
| ACTACGGAAATTGCAATTAA+CGG | + | chr6_2:60981034-60981053 | Msa0922420:CDS | 30.0% | |
| ACCTCAACAATGTTATAGAT+GGG | + | chr6_2:60981111-60981130 | Msa0922420:CDS | 30.0% | |
| TTTCTAATCCGATAGATTTG+AGG | + | chr6_2:60981393-60981412 | Msa0922420:CDS | 30.0% | |
| CAATAAGTCCTCAAATCTAT+CGG | - | chr6_2:60981404-60981423 | None:intergenic | 30.0% | |
| GATAGATTTGAGGACTTATT+GGG | + | chr6_2:60981403-60981422 | Msa0922420:CDS | 30.0% | |
| ATGGACTTAACATAAGCAAT+TGG | + | chr6_2:60980507-60980526 | Msa0922420:CDS | 30.0% | |
| TGGACTTAACATAAGCAATT+GGG | + | chr6_2:60980508-60980527 | Msa0922420:CDS | 30.0% | |
| ! | TTACCCTATGGATTATATGA+GGG | + | chr6_2:60980691-60980710 | Msa0922420:CDS | 30.0% |
| ACTACGGAAATTGCAATTAA+CGG | + | chr6_2:60981034-60981053 | Msa0922420:CDS | 30.0% | |
| ACCTCAACAATGTTATAGAT+GGG | + | chr6_2:60981111-60981130 | Msa0922420:CDS | 30.0% | |
| TTTCTAATCCGATAGATTTG+AGG | + | chr6_2:60981393-60981412 | Msa0922420:CDS | 30.0% | |
| CAATAAGTCCTCAAATCTAT+CGG | - | chr6_2:60981404-60981423 | None:intergenic | 30.0% | |
| GATAGATTTGAGGACTTATT+GGG | + | chr6_2:60981403-60981422 | Msa0922420:CDS | 30.0% | |
| GGACTTAACATAAGCAATTG+GGG | + | chr6_2:60980509-60980528 | Msa0922420:CDS | 35.0% | |
| ! | CTTACCCTATGGATTATATG+AGG | + | chr6_2:60980690-60980709 | Msa0922420:CDS | 35.0% |
| CATCCCTCATATAATCCATA+GGG | - | chr6_2:60980697-60980716 | None:intergenic | 35.0% | |
| TACTAGTACTATAACCTGGA+GGG | - | chr6_2:60980778-60980797 | None:intergenic | 35.0% | |
| ATACTAGTACTATAACCTGG+AGG | - | chr6_2:60980779-60980798 | None:intergenic | 35.0% | |
| GGAATACTAGTACTATAACC+TGG | - | chr6_2:60980782-60980801 | None:intergenic | 35.0% | |
| AATGATTCGACCATGTGAAT+TGG | + | chr6_2:60980829-60980848 | Msa0922420:CDS | 35.0% | |
| TCTTCCTTAACCAATTCACA+TGG | - | chr6_2:60980842-60980861 | None:intergenic | 35.0% | |
| ! | AAGGGCACAAAAGAAAACTA+CGG | + | chr6_2:60981018-60981037 | Msa0922420:CDS | 35.0% |
| CTACGGAAATTGCAATTAAC+GGG | + | chr6_2:60981035-60981054 | Msa0922420:CDS | 35.0% | |
| TGCAATTAACGGGATTGATT+TGG | + | chr6_2:60981045-60981064 | Msa0922420:CDS | 35.0% | |
| CACCTCAACAATGTTATAGA+TGG | + | chr6_2:60981110-60981129 | Msa0922420:CDS | 35.0% | |
| CCTCAACAATGTTATAGATG+GGG | + | chr6_2:60981112-60981131 | Msa0922420:CDS | 35.0% | |
| CGATAGATTTGAGGACTTAT+TGG | + | chr6_2:60981402-60981421 | Msa0922420:CDS | 35.0% | |
| CCTGATAGTAACAAACTTGT+TGG | - | chr6_2:60981441-60981460 | None:intergenic | 35.0% | |
| !! | CCAACAAGTTTGTTACTATC+AGG | + | chr6_2:60981438-60981457 | Msa0922420:CDS | 35.0% |
| GGACTTAACATAAGCAATTG+GGG | + | chr6_2:60980509-60980528 | Msa0922420:CDS | 35.0% | |
| ! | CTTACCCTATGGATTATATG+AGG | + | chr6_2:60980690-60980709 | Msa0922420:CDS | 35.0% |
| CATCCCTCATATAATCCATA+GGG | - | chr6_2:60980697-60980716 | None:intergenic | 35.0% | |
| TACTAGTACTATAACCTGGA+GGG | - | chr6_2:60980778-60980797 | None:intergenic | 35.0% | |
| ATACTAGTACTATAACCTGG+AGG | - | chr6_2:60980779-60980798 | None:intergenic | 35.0% | |
| GGAATACTAGTACTATAACC+TGG | - | chr6_2:60980782-60980801 | None:intergenic | 35.0% | |
| AATGATTCGACCATGTGAAT+TGG | + | chr6_2:60980829-60980848 | Msa0922420:CDS | 35.0% | |
| TCTTCCTTAACCAATTCACA+TGG | - | chr6_2:60980842-60980861 | None:intergenic | 35.0% | |
| ! | AAGGGCACAAAAGAAAACTA+CGG | + | chr6_2:60981018-60981037 | Msa0922420:CDS | 35.0% |
| CTACGGAAATTGCAATTAAC+GGG | + | chr6_2:60981035-60981054 | Msa0922420:CDS | 35.0% | |
| TGCAATTAACGGGATTGATT+TGG | + | chr6_2:60981045-60981064 | Msa0922420:CDS | 35.0% | |
| CACCTCAACAATGTTATAGA+TGG | + | chr6_2:60981110-60981129 | Msa0922420:CDS | 35.0% | |
| CCTCAACAATGTTATAGATG+GGG | + | chr6_2:60981112-60981131 | Msa0922420:CDS | 35.0% | |
| CGATAGATTTGAGGACTTAT+TGG | + | chr6_2:60981402-60981421 | Msa0922420:CDS | 35.0% | |
| CCTGATAGTAACAAACTTGT+TGG | - | chr6_2:60981441-60981460 | None:intergenic | 35.0% | |
| !! | CCAACAAGTTTGTTACTATC+AGG | + | chr6_2:60981438-60981457 | Msa0922420:CDS | 35.0% |
| TTTCGACTTCCAATCAAAGG+CGG | - | chr6_2:60980605-60980624 | None:intergenic | 40.0% | |
| GCATTTCGACTTCCAATCAA+AGG | - | chr6_2:60980608-60980627 | None:intergenic | 40.0% | |
| CATATCACCATCGGGAAATT+GGG | + | chr6_2:60980654-60980673 | Msa0922420:CDS | 40.0% | |
| TCCATAGGGTAAGTAGTTTG+AGG | - | chr6_2:60980683-60980702 | None:intergenic | 40.0% | |
| GCATCCCTCATATAATCCAT+AGG | - | chr6_2:60980698-60980717 | None:intergenic | 40.0% | |
| TGGATTATATGAGGGATGCA+TGG | + | chr6_2:60980699-60980718 | Msa0922420:CDS | 40.0% | |
| !! | ATGCATGGATTAGTAGTCAG+AGG | + | chr6_2:60980714-60980733 | Msa0922420:CDS | 40.0% |
| !! | TGCATGGATTAGTAGTCAGA+GGG | + | chr6_2:60980715-60980734 | Msa0922420:CDS | 40.0% |
| ATGATGAGCTGAAGATGTCT+CGG | - | chr6_2:60980804-60980823 | None:intergenic | 40.0% | |
| TCGACCATGTGAATTGGTTA+AGG | + | chr6_2:60980835-60980854 | Msa0922420:CDS | 40.0% | |
| GGTTAAGGAAGAAATGCCAA+TGG | + | chr6_2:60980850-60980869 | Msa0922420:CDS | 40.0% | |
| TAAGGAAGAAATGCCAATGG+AGG | + | chr6_2:60980853-60980872 | Msa0922420:CDS | 40.0% | |
| TGAATGGAACTGGTAAGAAG+AGG | + | chr6_2:60980897-60980916 | Msa0922420:CDS | 40.0% | |
| TTCTTTGCCTTAGGAGACTT+CGG | - | chr6_2:60980938-60980957 | None:intergenic | 40.0% | |
| ! | GTAGTTTTCTTTTGTGCCCT+TGG | - | chr6_2:60981019-60981038 | None:intergenic | 40.0% |
| GTGCAAGAACAAACAGGAAT+CGG | - | chr6_2:60981085-60981104 | None:intergenic | 40.0% | |
| ATTCCTGTTTGTTCTTGCAC+TGG | + | chr6_2:60981085-60981104 | Msa0922420:CDS | 40.0% | |
| TTCCTGTTTGTTCTTGCACT+GGG | + | chr6_2:60981086-60981105 | Msa0922420:CDS | 40.0% | |
| CCCCATCTATAACATTGTTG+AGG | - | chr6_2:60981115-60981134 | None:intergenic | 40.0% | |
| ACAATGTTATAGATGGGGCT+CGG | + | chr6_2:60981117-60981136 | Msa0922420:CDS | 40.0% | |
| CGTTTAGTACTCATAGGCAA+AGG | - | chr6_2:60981187-60981206 | None:intergenic | 40.0% | |
| AGGACTTATTGGGCAAAACA+TGG | + | chr6_2:60981413-60981432 | Msa0922420:CDS | 40.0% | |
| TTTCGACTTCCAATCAAAGG+CGG | - | chr6_2:60980605-60980624 | None:intergenic | 40.0% | |
| GCATTTCGACTTCCAATCAA+AGG | - | chr6_2:60980608-60980627 | None:intergenic | 40.0% | |
| CATATCACCATCGGGAAATT+GGG | + | chr6_2:60980654-60980673 | Msa0922420:CDS | 40.0% | |
| TCCATAGGGTAAGTAGTTTG+AGG | - | chr6_2:60980683-60980702 | None:intergenic | 40.0% | |
| GCATCCCTCATATAATCCAT+AGG | - | chr6_2:60980698-60980717 | None:intergenic | 40.0% | |
| TGGATTATATGAGGGATGCA+TGG | + | chr6_2:60980699-60980718 | Msa0922420:CDS | 40.0% | |
| !! | ATGCATGGATTAGTAGTCAG+AGG | + | chr6_2:60980714-60980733 | Msa0922420:CDS | 40.0% |
| !! | TGCATGGATTAGTAGTCAGA+GGG | + | chr6_2:60980715-60980734 | Msa0922420:CDS | 40.0% |
| ATGATGAGCTGAAGATGTCT+CGG | - | chr6_2:60980804-60980823 | None:intergenic | 40.0% | |
| TCGACCATGTGAATTGGTTA+AGG | + | chr6_2:60980835-60980854 | Msa0922420:CDS | 40.0% | |
| GGTTAAGGAAGAAATGCCAA+TGG | + | chr6_2:60980850-60980869 | Msa0922420:CDS | 40.0% | |
| TAAGGAAGAAATGCCAATGG+AGG | + | chr6_2:60980853-60980872 | Msa0922420:CDS | 40.0% | |
| TGAATGGAACTGGTAAGAAG+AGG | + | chr6_2:60980897-60980916 | Msa0922420:CDS | 40.0% | |
| TTCTTTGCCTTAGGAGACTT+CGG | - | chr6_2:60980938-60980957 | None:intergenic | 40.0% | |
| ! | GTAGTTTTCTTTTGTGCCCT+TGG | - | chr6_2:60981019-60981038 | None:intergenic | 40.0% |
| GTGCAAGAACAAACAGGAAT+CGG | - | chr6_2:60981085-60981104 | None:intergenic | 40.0% | |
| ATTCCTGTTTGTTCTTGCAC+TGG | + | chr6_2:60981085-60981104 | Msa0922420:CDS | 40.0% | |
| TTCCTGTTTGTTCTTGCACT+GGG | + | chr6_2:60981086-60981105 | Msa0922420:CDS | 40.0% | |
| CCCCATCTATAACATTGTTG+AGG | - | chr6_2:60981115-60981134 | None:intergenic | 40.0% | |
| ACAATGTTATAGATGGGGCT+CGG | + | chr6_2:60981117-60981136 | Msa0922420:CDS | 40.0% | |
| CGTTTAGTACTCATAGGCAA+AGG | - | chr6_2:60981187-60981206 | None:intergenic | 40.0% | |
| AGGACTTATTGGGCAAAACA+TGG | + | chr6_2:60981413-60981432 | Msa0922420:CDS | 40.0% | |
| GATTGGAAGTCGAAATGCTG+CGG | + | chr6_2:60980610-60980629 | Msa0922420:CDS | 45.0% | |
| TCGAAATGCTGCGGTTATGT+CGG | + | chr6_2:60980619-60980638 | Msa0922420:CDS | 45.0% | |
| CTAACGGTGCATATCACCAT+CGG | + | chr6_2:60980645-60980664 | Msa0922420:CDS | 45.0% | |
| TAACGGTGCATATCACCATC+GGG | + | chr6_2:60980646-60980665 | Msa0922420:CDS | 45.0% | |
| GCATATCACCATCGGGAAAT+TGG | + | chr6_2:60980653-60980672 | Msa0922420:CDS | 45.0% | |
| GCCTCAAACTACTTACCCTA+TGG | + | chr6_2:60980679-60980698 | Msa0922420:CDS | 45.0% | |
| ATGATACCTACTAACCCTCC+AGG | + | chr6_2:60980761-60980780 | Msa0922420:CDS | 45.0% | |
| ! | CTATAACCTGGAGGGTTAGT+AGG | - | chr6_2:60980770-60980789 | None:intergenic | 45.0% |
| TGATGAGCTGAAGATGTCTC+GGG | - | chr6_2:60980803-60980822 | None:intergenic | 45.0% | |
| GAAGGAGAATTCTCGTCCTT+CGG | - | chr6_2:60980983-60981002 | None:intergenic | 45.0% | |
| GAAGGACGAGAATTCTCCTT+CGG | + | chr6_2:60980982-60981001 | Msa0922420:CDS | 45.0% | |
| TTCGGTTCAACGAACACCAA+GGG | + | chr6_2:60981000-60981019 | Msa0922420:CDS | 45.0% | |
| CAATGTTATAGATGGGGCTC+GGG | + | chr6_2:60981118-60981137 | Msa0922420:CDS | 45.0% | |
| CCTATGAGTACTAAACGACG+CGG | + | chr6_2:60981190-60981209 | Msa0922420:CDS | 45.0% | |
| ATTAGAGAAACATGCAGCCG+AGG | + | chr6_2:60981361-60981380 | Msa0922420:CDS | 45.0% | |
| TTAGAGAAACATGCAGCCGA+GGG | + | chr6_2:60981362-60981381 | Msa0922420:CDS | 45.0% | |
| GATTGGAAGTCGAAATGCTG+CGG | + | chr6_2:60980610-60980629 | Msa0922420:CDS | 45.0% | |
| TCGAAATGCTGCGGTTATGT+CGG | + | chr6_2:60980619-60980638 | Msa0922420:CDS | 45.0% | |
| CTAACGGTGCATATCACCAT+CGG | + | chr6_2:60980645-60980664 | Msa0922420:CDS | 45.0% | |
| TAACGGTGCATATCACCATC+GGG | + | chr6_2:60980646-60980665 | Msa0922420:CDS | 45.0% | |
| GCATATCACCATCGGGAAAT+TGG | + | chr6_2:60980653-60980672 | Msa0922420:CDS | 45.0% | |
| GCCTCAAACTACTTACCCTA+TGG | + | chr6_2:60980679-60980698 | Msa0922420:CDS | 45.0% | |
| ATGATACCTACTAACCCTCC+AGG | + | chr6_2:60980761-60980780 | Msa0922420:CDS | 45.0% | |
| ! | CTATAACCTGGAGGGTTAGT+AGG | - | chr6_2:60980770-60980789 | None:intergenic | 45.0% |
| TGATGAGCTGAAGATGTCTC+GGG | - | chr6_2:60980803-60980822 | None:intergenic | 45.0% | |
| GAAGGAGAATTCTCGTCCTT+CGG | - | chr6_2:60980983-60981002 | None:intergenic | 45.0% | |
| GAAGGACGAGAATTCTCCTT+CGG | + | chr6_2:60980982-60981001 | Msa0922420:CDS | 45.0% | |
| TTCGGTTCAACGAACACCAA+GGG | + | chr6_2:60981000-60981019 | Msa0922420:CDS | 45.0% | |
| CAATGTTATAGATGGGGCTC+GGG | + | chr6_2:60981118-60981137 | Msa0922420:CDS | 45.0% | |
| CCTATGAGTACTAAACGACG+CGG | + | chr6_2:60981190-60981209 | Msa0922420:CDS | 45.0% | |
| ATTAGAGAAACATGCAGCCG+AGG | + | chr6_2:60981361-60981380 | Msa0922420:CDS | 45.0% | |
| TTAGAGAAACATGCAGCCGA+GGG | + | chr6_2:60981362-60981381 | Msa0922420:CDS | 45.0% | |
| ACAACTGATGCCATCGATGC+CGG | + | chr6_2:60980574-60980593 | Msa0922420:CDS | 50.0% | |
| ! | CCAATCAAAGGCGGCTTTTC+CGG | - | chr6_2:60980596-60980615 | None:intergenic | 50.0% |
| CGAAATGCTGCGGTTATGTC+GGG | + | chr6_2:60980620-60980639 | Msa0922420:CDS | 50.0% | |
| GCGGTTATGTCGGGAACTAA+CGG | + | chr6_2:60980629-60980648 | Msa0922420:CDS | 50.0% | |
| GTCGAGAAGGTGAATGGAAC+TGG | + | chr6_2:60980887-60980906 | Msa0922420:CDS | 50.0% | |
| GGAACTGGTAAGAAGAGGCA+AGG | + | chr6_2:60980902-60980921 | Msa0922420:CDS | 50.0% | |
| TAAGAAGAGGCAAGGACCGA+AGG | + | chr6_2:60980910-60980929 | Msa0922420:CDS | 50.0% | |
| TTAGGAGACTTCGGCACCTT+CGG | - | chr6_2:60980929-60980948 | None:intergenic | 50.0% | |
| CTCTTCGGCTTCTTTGCCTT+AGG | - | chr6_2:60980947-60980966 | None:intergenic | 50.0% | |
| AAGGCAAAGAAGCCGAAGAG+AGG | + | chr6_2:60980947-60980966 | Msa0922420:CDS | 50.0% | |
| !! | CTTGGTGTTCGTTGAACCGA+AGG | - | chr6_2:60981001-60981020 | None:intergenic | 50.0% |
| CTTCGGTTCAACGAACACCA+AGG | + | chr6_2:60980999-60981018 | Msa0922420:CDS | 50.0% | |
| GTCCCAGTGCAAGAACAAAC+AGG | - | chr6_2:60981091-60981110 | None:intergenic | 50.0% | |
| CCGCGTCGTTTAGTACTCAT+AGG | - | chr6_2:60981193-60981212 | None:intergenic | 50.0% | |
| ACAACTGATGCCATCGATGC+CGG | + | chr6_2:60980574-60980593 | Msa0922420:CDS | 50.0% | |
| ! | CCAATCAAAGGCGGCTTTTC+CGG | - | chr6_2:60980596-60980615 | None:intergenic | 50.0% |
| CGAAATGCTGCGGTTATGTC+GGG | + | chr6_2:60980620-60980639 | Msa0922420:CDS | 50.0% | |
| GCGGTTATGTCGGGAACTAA+CGG | + | chr6_2:60980629-60980648 | Msa0922420:CDS | 50.0% | |
| GTCGAGAAGGTGAATGGAAC+TGG | + | chr6_2:60980887-60980906 | Msa0922420:CDS | 50.0% | |
| GGAACTGGTAAGAAGAGGCA+AGG | + | chr6_2:60980902-60980921 | Msa0922420:CDS | 50.0% | |
| TAAGAAGAGGCAAGGACCGA+AGG | + | chr6_2:60980910-60980929 | Msa0922420:CDS | 50.0% | |
| TTAGGAGACTTCGGCACCTT+CGG | - | chr6_2:60980929-60980948 | None:intergenic | 50.0% | |
| CTCTTCGGCTTCTTTGCCTT+AGG | - | chr6_2:60980947-60980966 | None:intergenic | 50.0% | |
| AAGGCAAAGAAGCCGAAGAG+AGG | + | chr6_2:60980947-60980966 | Msa0922420:CDS | 50.0% | |
| !! | CTTGGTGTTCGTTGAACCGA+AGG | - | chr6_2:60981001-60981020 | None:intergenic | 50.0% |
| CTTCGGTTCAACGAACACCA+AGG | + | chr6_2:60980999-60981018 | Msa0922420:CDS | 50.0% | |
| GTCCCAGTGCAAGAACAAAC+AGG | - | chr6_2:60981091-60981110 | None:intergenic | 50.0% | |
| CCGCGTCGTTTAGTACTCAT+AGG | - | chr6_2:60981193-60981212 | None:intergenic | 50.0% | |
| CCGGAAAAGCCGCCTTTGAT+TGG | + | chr6_2:60980593-60980612 | Msa0922420:CDS | 55.0% | |
| ! | GAGGCATCCCAATTTCCCGA+TGG | - | chr6_2:60980664-60980683 | None:intergenic | 55.0% |
| ACCACAGGTGCTTCCTCCAT+TGG | - | chr6_2:60980869-60980888 | None:intergenic | 55.0% | |
| CCATTCACCTTCTCGACCAC+AGG | - | chr6_2:60980884-60980903 | None:intergenic | 55.0% | |
| CCTGTGGTCGAGAAGGTGAA+TGG | + | chr6_2:60980881-60980900 | Msa0922420:CDS | 55.0% | |
| !! | GAAGGTGCCGAAGTCTCCTA+AGG | + | chr6_2:60980928-60980947 | Msa0922420:CDS | 55.0% |
| TGTTATAGATGGGGCTCGGG+TGG | + | chr6_2:60981121-60981140 | Msa0922420:CDS | 55.0% | |
| GCAGTCTGCATGCTGCACAA+CGG | + | chr6_2:60981147-60981166 | Msa0922420:CDS | 55.0% | |
| CCGGAAAAGCCGCCTTTGAT+TGG | + | chr6_2:60980593-60980612 | Msa0922420:CDS | 55.0% | |
| ! | GAGGCATCCCAATTTCCCGA+TGG | - | chr6_2:60980664-60980683 | None:intergenic | 55.0% |
| ACCACAGGTGCTTCCTCCAT+TGG | - | chr6_2:60980869-60980888 | None:intergenic | 55.0% | |
| CCATTCACCTTCTCGACCAC+AGG | - | chr6_2:60980884-60980903 | None:intergenic | 55.0% | |
| CCTGTGGTCGAGAAGGTGAA+TGG | + | chr6_2:60980881-60980900 | Msa0922420:CDS | 55.0% | |
| !! | GAAGGTGCCGAAGTCTCCTA+AGG | + | chr6_2:60980928-60980947 | Msa0922420:CDS | 55.0% |
| TGTTATAGATGGGGCTCGGG+TGG | + | chr6_2:60981121-60981140 | Msa0922420:CDS | 55.0% | |
| GCAGTCTGCATGCTGCACAA+CGG | + | chr6_2:60981147-60981166 | Msa0922420:CDS | 55.0% | |
| !! | GCCAATGGAGGAAGCACCTG+TGG | + | chr6_2:60980865-60980884 | Msa0922420:CDS | 60.0% |
| !! | GGAAGCACCTGTGGTCGAGA+AGG | + | chr6_2:60980874-60980893 | Msa0922420:CDS | 60.0% |
| GGCACACGAGGTCCTCTCTT+CGG | - | chr6_2:60980962-60980981 | None:intergenic | 60.0% | |
| TTCTCGTCCTTCGGCACACG+AGG | - | chr6_2:60980974-60980993 | None:intergenic | 60.0% | |
| ATAGATGGGGCTCGGGTGGA+TGG | + | chr6_2:60981125-60981144 | Msa0922420:CDS | 60.0% | |
| ! | CGACGCGGTGCTAGAATAGC+CGG | + | chr6_2:60981205-60981224 | Msa0922420:intron | 60.0% |
| !! | GCCAATGGAGGAAGCACCTG+TGG | + | chr6_2:60980865-60980884 | Msa0922420:CDS | 60.0% |
| !! | GGAAGCACCTGTGGTCGAGA+AGG | + | chr6_2:60980874-60980893 | Msa0922420:CDS | 60.0% |
| GGCACACGAGGTCCTCTCTT+CGG | - | chr6_2:60980962-60980981 | None:intergenic | 60.0% | |
| TTCTCGTCCTTCGGCACACG+AGG | - | chr6_2:60980974-60980993 | None:intergenic | 60.0% | |
| ATAGATGGGGCTCGGGTGGA+TGG | + | chr6_2:60981125-60981144 | Msa0922420:CDS | 60.0% | |
| ! | CGACGCGGTGCTAGAATAGC+CGG | + | chr6_2:60981205-60981224 | Msa0922420:intron | 60.0% |
| !! | GGCGGCTTTTCCGGCATCGA+TGG | - | chr6_2:60980587-60980606 | None:intergenic | 65.0% |
| GAGAGGACCTCGTGTGCCGA+AGG | + | chr6_2:60980964-60980983 | Msa0922420:CDS | 65.0% | |
| !! | GGCGGCTTTTCCGGCATCGA+TGG | - | chr6_2:60980587-60980606 | None:intergenic | 65.0% |
| GAGAGGACCTCGTGTGCCGA+AGG | + | chr6_2:60980964-60980983 | Msa0922420:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 60980494 | 60981463 | 60980494 | ID=Msa0922420;Name=Msa0922420 |
| chr6_2 | mRNA | 60980494 | 60981463 | 60980494 | ID=Msa0922420-mRNA-1;Parent=Msa0922420;Name=Msa0922420-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|0|0|0.5|1|1|2|0|278 |
| chr6_2 | exon | 60980494 | 60981211 | 60980494 | ID=Msa0922420-mRNA-1:exon:9360;Parent=Msa0922420-mRNA-1 |
| chr6_2 | exon | 60981345 | 60981463 | 60981345 | ID=Msa0922420-mRNA-1:exon:9361;Parent=Msa0922420-mRNA-1 |
| chr6_2 | CDS | 60980494 | 60981211 | 60980494 | ID=Msa0922420-mRNA-1:cds;Parent=Msa0922420-mRNA-1 |
| chr6_2 | CDS | 60981345 | 60981463 | 60981345 | ID=Msa0922420-mRNA-1:cds;Parent=Msa0922420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
