AlfalfaGEDB | Msa0922420

M. sativa cultivar zhongmu-4 / Msa0922420

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF06217.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0922420	XP_039682605.1	94.464	289	5	1	1	278	1	289	0.0	558

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0922420	sp\|Q9SKD0\|BPC1_ARATH	47.841	301	116	11	1	278	1	283	6.20e-83	253

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa0922420	TF	BBR-BPC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0922420	MtrunA17_Chr6g0479911	94.464	289	5	1	1	278	1	289	0.0	558
Msa0922420	MtrunA17_Chr8g0375531	48.797	291	120	11	4	278	3	280	7.96e-71	219
Msa0922420	MtrunA17_Chr1g0156031	48.246	114	48	1	176	278	227	340	2.32e-36	132
Msa0922420	MtrunA17_Chr8g0385961	29.482	251	155	5	48	278	64	312	3.89e-36	131

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0922420	AT2G01930.2	47.841	301	116	11	1	278	1	283	6.31e-84	253
Msa0922420	AT2G01930.1	47.841	301	116	11	1	278	1	283	6.31e-84	253
Msa0922420	AT1G14685.1	47.458	295	122	9	1	278	1	279	4.33e-77	236
Msa0922420	AT1G14685.4	47.458	295	122	9	1	278	1	279	4.33e-77	236
Msa0922420	AT1G14685.3	47.458	295	122	9	1	278	1	279	4.33e-77	236
Msa0922420	AT1G14685.2	47.458	295	122	9	1	278	1	279	4.33e-77	236
Msa0922420	AT1G68120.1	43.051	295	120	11	4	278	3	269	1.18e-65	206
Msa0922420	AT2G35550.2	47.619	147	64	3	143	278	82	226	2.10e-39	137
Msa0922420	AT2G35550.4	47.619	147	64	3	143	278	82	226	2.10e-39	137
Msa0922420	AT2G35550.3	47.619	147	64	3	143	278	82	226	2.10e-39	137

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Find 93 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGGCAAAGAAGCCGAAGAG+AGG	0.622231	6_2:+60980947	Msa0922420:CDS
AAGGGCACAAAAGAAAACTA+CGG	0.609634	6_2:+60981018	Msa0922420:CDS
AATGATTCGACCATGTGAAT+TGG	0.408906	6_2:+60980829	Msa0922420:CDS
ACAACTGATGCCATCGATGC+CGG	0.499881	6_2:+60980574	Msa0922420:CDS
ACAATGTTATAGATGGGGCT+CGG	0.487220	6_2:+60981117	Msa0922420:CDS
ACCACAGGTGCTTCCTCCAT+TGG	0.459398	6_2:-60980866	None:intergenic
ACCTCAACAATGTTATAGAT+GGG	0.523017	6_2:+60981111	Msa0922420:CDS
ACTACGGAAATTGCAATTAA+CGG	0.434305	6_2:+60981034	Msa0922420:CDS
AGGACTTATTGGGCAAAACA+TGG	0.561945	6_2:+60981413	Msa0922420:CDS
ATACTAGTACTATAACCTGG+AGG	0.700408	6_2:-60980776	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATGGACTTAACATAAGCAAT+TGG	+	chr6_2:60980507-60980526	Msa0922420:CDS	30.0%
TGGACTTAACATAAGCAATT+GGG	+	chr6_2:60980508-60980527	Msa0922420:CDS	30.0%
ACTACGGAAATTGCAATTAA+CGG	+	chr6_2:60981034-60981053	Msa0922420:CDS	30.0%
ACCTCAACAATGTTATAGAT+GGG	+	chr6_2:60981111-60981130	Msa0922420:CDS	30.0%
TTTCTAATCCGATAGATTTG+AGG	+	chr6_2:60981393-60981412	Msa0922420:CDS	30.0%
CAATAAGTCCTCAAATCTAT+CGG	-	chr6_2:60981404-60981423	None:intergenic	30.0%
GATAGATTTGAGGACTTATT+GGG	+	chr6_2:60981403-60981422	Msa0922420:CDS	30.0%
ATGGACTTAACATAAGCAAT+TGG	+	chr6_2:60980507-60980526	Msa0922420:CDS	30.0%
TGGACTTAACATAAGCAATT+GGG	+	chr6_2:60980508-60980527	Msa0922420:CDS	30.0%
ACTACGGAAATTGCAATTAA+CGG	+	chr6_2:60981034-60981053	Msa0922420:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_2	gene	60980494	60981463	60980494	ID=Msa0922420;Name=Msa0922420
chr6_2	mRNA	60980494	60981463	60980494	ID=Msa0922420-mRNA-1;Parent=Msa0922420;Name=Msa0922420-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0\|0\|0\|0.5\|1\|1\|2\|0\|278
chr6_2	exon	60980494	60981211	60980494	ID=Msa0922420-mRNA-1:exon:9360;Parent=Msa0922420-mRNA-1
chr6_2	exon	60981345	60981463	60981345	ID=Msa0922420-mRNA-1:exon:9361;Parent=Msa0922420-mRNA-1
chr6_2	CDS	60980494	60981211	60980494	ID=Msa0922420-mRNA-1:cds;Parent=Msa0922420-mRNA-1
chr6_2	CDS	60981345	60981463	60981345	ID=Msa0922420-mRNA-1:cds;Parent=Msa0922420-mRNA-1

Gene Sequence

>Msa0922420

ATGGATGGAGATAATGGACTTAACATAAGCAATTGGGGATACTATGAACCTGTTTCATCATTTAAGAATCATCTCGGTTTACAACTGATGCCATCGATGCCGGAAAAGCCGCCTTTGATTGGAAGTCGAAATGCTGCGGTTATGTCGGGAACTAACGGTGCATATCACCATCGGGAAATTGGGATGCCTCAAACTACTTACCCTATGGATTATATGAGGGATGCATGGATTAGTAGTCAGAGGGATAATAAGTATATGAATATGAATATGATACCTACTAACCCTCCAGGTTATAGTACTAGTATTCCCGAGACATCTTCAGCTCATCATATTCAAATGATTCGACCATGTGAATTGGTTAAGGAAGAAATGCCAATGGAGGAAGCACCTGTGGTCGAGAAGGTGAATGGAACTGGTAAGAAGAGGCAAGGACCGAAGGTGCCGAAGTCTCCTAAGGCAAAGAAGCCGAAGAGAGGACCTCGTGTGCCGAAGGACGAGAATTCTCCTTCGGTTCAACGAACACCAAGGGCACAAAAGAAAACTACGGAAATTGCAATTAACGGGATTGATTTGGATATTTCAAGTATTCCGATTCCTGTTTGTTCTTGCACTGGGACACCTCAACAATGTTATAGATGGGGCTCGGGTGGATGGCAGTCTGCATGCTGCACAACGGCTATATCGATATATCCTTTGCCTATGAGTACTAAACGACGCGGAGCTTTTAAGAAAGTATTAGAGAAACATGCAGCCGAGGGTTATAACTTTTCTAATCCGATAGATTTGAGGACTTATTGGGCAAAACATGGCACCAACAAGTTTGTTACTATCAGGTAG

Protein sequence

>Msa0922420

MDGDNGLNISNWGYYEPVSSFKNHLGLQLMPSMPEKPPLIGSRNAAVMSGTNGAYHHREIGMPQTTYPMDYMRDAWISSQRDNKYMNMNMIPTNPPGYSTSIPETSSAHHIQMIRPCELVKEEMPMEEAPVVEKVNGTGKKRQGPKVPKSPKAKKPKRGPRVPKDENSPSVQRTPRAQKKTTEIAINGIDLDISSIPIPVCSCTGTPQQCYRWGSGGWQSACCTTAISIYPLPMSTKRRGAFKKVLEKHAAEGYNFSNPIDLRTYWAKHGTNKFVTIR*