AlfalfaGEDB | Msa0922490

M. sativa cultivar zhongmu-4 / Msa0922490

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0922490	XP_039682598.1	94.917	1259	14	1	1	1259	1	1209	0.0	2455

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0922490	sp\|Q54BC9\|DYRK2_DICDI	34.048	373	190	9	879	1250	585	902	9.03e-55	211

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0922490	MtrunA17_Chr6g0480541	94.917	1259	14	1	1	1259	1	1209	0.0	2455
Msa0922490	MtrunA17_Chr5g0437131	60.050	398	109	2	860	1257	365	712	8.06e-163	503
Msa0922490	MtrunA17_Chr6g0480481	79.325	237	13	1	872	1108	8	208	2.55e-123	379
Msa0922490	MtrunA17_Chr6g0480491	96.629	178	6	0	692	869	1	178	1.65e-113	352
Msa0922490	MtrunA17_Chr6g0480501	93.860	114	7	0	566	679	1	114	3.91e-66	218
Msa0922490	MtrunA17_Chr8g0369241	33.509	379	209	9	897	1256	138	492	2.45e-51	197
Msa0922490	MtrunA17_Chr6g0480291	92.941	85	5	1	1175	1259	1	84	1.29e-47	164
Msa0922490	MtrunA17_Chr1g0210061	31.880	367	197	12	893	1251	605	926	9.82e-43	169
Msa0922490	MtrunA17_Chr3g0139371	28.358	402	204	8	881	1253	55	401	2.34e-38	149
Msa0922490	MtrunA17_Chr6g0480471	89.041	73	4	1	1132	1200	3	75	8.67e-37	133

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0922490	AT1G73450.1	57.559	1270	410	23	1	1259	1	1152	0.0	1307
Msa0922490	AT1G73460.2	57.323	1270	430	20	1	1259	1	1169	0.0	1303
Msa0922490	AT1G73460.1	57.323	1270	430	20	1	1259	1	1169	0.0	1303
Msa0922490	AT3G17750.1	53.354	1267	454	17	1	1259	1	1138	0.0	1179
Msa0922490	AT2G40120.1	55.286	454	141	3	801	1251	170	564	1.27e-164	503
Msa0922490	AT5G35980.1	34.037	379	207	11	897	1256	121	475	2.47e-47	185
Msa0922490	AT5G35980.2	34.037	379	207	11	897	1256	121	475	3.21e-47	183
Msa0922490	AT5G35980.3	34.037	379	207	11	897	1256	86	440	3.79e-47	184
Msa0922490	AT3G25840.1	30.245	367	203	11	893	1251	612	933	1.59e-39	160
Msa0922490	AT3G25840.2	30.245	367	203	11	893	1251	350	671	5.94e-39	156

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Find 340 sgRNAs with CRISPR-Local

Find 674 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCTGATACAAGATCAG+AGG	0.652743	6_2:+61073252	None:intergenic
AAAAGAGCAGGTGGATGAAG+TGG	0.493164	6_2:-61074785	Msa0922490:CDS
AAAAGCATTCATACAGTCAT+CGG	0.521280	6_2:+61072301	None:intergenic
AAAAGGGAAAACAGTCTTGA+TGG	0.418446	6_2:+61074906	None:intergenic
AAAATCATATGCTTTATGAG+AGG	0.623112	6_2:-61068891	Msa0922490:CDS
AAAATGTGATACTTGTCTCC+AGG	0.560708	6_2:+61071151	None:intergenic
AAACACACTCATCATGATTT+TGG	0.156098	6_2:-61072542	Msa0922490:CDS
AAACATCCACGCCTGTGTGC+AGG	0.551422	6_2:+61071260	None:intergenic
AAACCGTTTCACACGAGCTG+AGG	0.618279	6_2:-61075715	Msa0922490:CDS
AAAGAGCAGGTGGATGAAGT+GGG	0.466670	6_2:-61074784	Msa0922490:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CATTGGAGAATGAAATTCTA+GGG	+	chr6_2:61067619-61067638	None:intergenic	30.0%
ACATTGGAGAATGAAATTCT+AGG	+	chr6_2:61067620-61067639	None:intergenic	30.0%
TCAAGATCTGACATTTACAT+TGG	+	chr6_2:61067636-61067655	None:intergenic	30.0%
CACAGAAAAATTCAACCAAA+AGG	+	chr6_2:61067757-61067776	None:intergenic	30.0%
AAACAAGCATTTATGCTTCT+GGG	-	chr6_2:61067949-61067968	Msa0922490:three_prime_UTR	30.0%
TTTATGCTTCTGGGTTTATT+TGG	-	chr6_2:61067958-61067977	Msa0922490:three_prime_UTR	30.0%
GAAGGCAAATTAAAGAACTT+GGG	+	chr6_2:61068091-61068110	None:intergenic	30.0%
TGAAGGCAAATTAAAGAACT+TGG	+	chr6_2:61068092-61068111	None:intergenic	30.0%
CGAAACTTTAACCAAATTGA+AGG	+	chr6_2:61068109-61068128	None:intergenic	30.0%
GAACCAAAAATACACACAAA+TGG	+	chr6_2:61068330-61068349	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_2	gene	61067380	61076843	61067380	ID=Msa0922490;Name=Msa0922490
chr6_2	mRNA	61067380	61076843	61067380	ID=Msa0922490-mRNA-1;Parent=Msa0922490;Name=Msa0922490-mRNA-1;_AED=0.15;_eAED=0.16;_QI=193\|0.7\|0.72\|0.90\|0.8\|0.72\|11\|847\|1259
chr6_2	exon	61067380	61068415	61067380	ID=Msa0922490-mRNA-1:exon:9392;Parent=Msa0922490-mRNA-1
chr6_2	exon	61068885	61069028	61068885	ID=Msa0922490-mRNA-1:exon:9391;Parent=Msa0922490-mRNA-1
chr6_2	exon	61069131	61069178	61069131	ID=Msa0922490-mRNA-1:exon:9390;Parent=Msa0922490-mRNA-1
chr6_2	exon	61069583	61069600	61069583	ID=Msa0922490-mRNA-1:exon:9389;Parent=Msa0922490-mRNA-1
chr6_2	exon	61069741	61070103	61069741	ID=Msa0922490-mRNA-1:exon:9388;Parent=Msa0922490-mRNA-1
chr6_2	exon	61070573	61070680	61070573	ID=Msa0922490-mRNA-1:exon:9387;Parent=Msa0922490-mRNA-1
chr6_2	exon	61071123	61071402	61071123	ID=Msa0922490-mRNA-1:exon:9386;Parent=Msa0922490-mRNA-1
chr6_2	exon	61071975	61073334	61071975	ID=Msa0922490-mRNA-1:exon:9385;Parent=Msa0922490-mRNA-1
chr6_2	exon	61074515	61075802	61074515	ID=Msa0922490-mRNA-1:exon:9384;Parent=Msa0922490-mRNA-1
chr6_2	exon	61076142	61076216	61076142	ID=Msa0922490-mRNA-1:exon:9383;Parent=Msa0922490-mRNA-1
chr6_2	exon	61076744	61076843	61076744	ID=Msa0922490-mRNA-1:exon:9382;Parent=Msa0922490-mRNA-1
chr6_2	five_prime_UTR	61076744	61076843	61076744	ID=Msa0922490-mRNA-1:five_prime_utr;Parent=Msa0922490-mRNA-1
chr6_2	five_prime_UTR	61076142	61076216	61076142	ID=Msa0922490-mRNA-1:five_prime_utr;Parent=Msa0922490-mRNA-1
chr6_2	five_prime_UTR	61075785	61075802	61075785	ID=Msa0922490-mRNA-1:five_prime_utr;Parent=Msa0922490-mRNA-1
chr6_2	CDS	61074515	61075784	61074515	ID=Msa0922490-mRNA-1:cds;Parent=Msa0922490-mRNA-1
chr6_2	CDS	61071975	61073334	61071975	ID=Msa0922490-mRNA-1:cds;Parent=Msa0922490-mRNA-1
chr6_2	CDS	61071123	61071402	61071123	ID=Msa0922490-mRNA-1:cds;Parent=Msa0922490-mRNA-1
chr6_2	CDS	61070573	61070680	61070573	ID=Msa0922490-mRNA-1:cds;Parent=Msa0922490-mRNA-1
chr6_2	CDS	61069741	61070103	61069741	ID=Msa0922490-mRNA-1:cds;Parent=Msa0922490-mRNA-1
chr6_2	CDS	61069583	61069600	61069583	ID=Msa0922490-mRNA-1:cds;Parent=Msa0922490-mRNA-1
chr6_2	CDS	61069131	61069178	61069131	ID=Msa0922490-mRNA-1:cds;Parent=Msa0922490-mRNA-1
chr6_2	CDS	61068885	61069028	61068885	ID=Msa0922490-mRNA-1:cds;Parent=Msa0922490-mRNA-1
chr6_2	CDS	61068227	61068415	61068227	ID=Msa0922490-mRNA-1:cds;Parent=Msa0922490-mRNA-1
chr6_2	three_prime_UTR	61067380	61068226	61067380	ID=Msa0922490-mRNA-1:three_prime_utr;Parent=Msa0922490-mRNA-1

Gene Sequence

>Msa0922490

ATGGCAGAAACAAATTCAGTTGACGTGATTTTGGACTTTTTGAAGAGAAACCGTTTCACACGAGCTGAGGCAGCTTTGCGAAGTGAGCTCAATAACTGTTCTGATGTGAATGGGATCCTTCAGAAGCTTACCTTGGATGAGAAGAACTTGTGTGATTTGTCGCAGAATGATAAGGGAAAGCTAGTGGTAGAAAATCGAGGGTTGGATTCTCGTGATAGTGTTGAAGTTTCTAAAGAACTGATTGTGAAGGAAATCGAGTGTGGAACTGCTAGAAATACTACCGAGAGCAAATGGAAAAATGCCACTCCGGCTGAGGAAAGGAATAAATCTAATGAAGTGGTTGGAACGAGTGGCACAAATTTCACTTTCTTGAAGAGTTCAGAGGACAGTGTGTTCGATTTGCAGTCATGGAAGATTAATGGTCCTGCAGAGCCTTACCAAAATGACGGTGCAAGCAAGGCTAGTAATACTTCGAAGGCCTCAATATCCCAGCAATCGAGAACTCAAATGAGTGAAGGCTCAATATCTCAGCAATTGAAAACTTCAATGAGTGAAGCCGCAATATCACAGCAATCGAAAACTCAAACTAGTGAAGCCTTTGACGCAGCCAACAGTAATGTAAAAAATGCGGTGGAAAATAATGTTCCCGATGAGAAAAAACCCTTGTGGCTTGGAAGTAGTGGTAAAGCCTCTACAGAACCAAAGATTAACCTTGTGCAAAACAAAGAATCTAGGGAAATTGATCGGCAGCAGCTTAAATTTAGTAGTTCATCACTTAAAGAGAACTTGGCTGATAACGTCTTGTCAAGAGCTGATGAGAATGCAAATTCATCTTCTGATATTTGGAAAGATTGTTCCATCAAGACTGTTTTCCCTTTTTCAAAGGGGGATGTGTCTACGAGCTATAGTAGCTCAACTTATTCAGAAAAAGTAGACGAAAAGAGAAAGCCAGAAATTGGTGATGCAAAGGCTTATATAAAAGAGCAGGTGGATGAAGTGGGGAGAGCTTTTTACTTGGGGAAGTTGCAAGGAAGTTCTGAACAGAATAACATCGGGGGATTAAGTTTTCCTCTTGCATTGGAGAAGCAGAAGGAAGAGTATCCAAGGCTTCCTCCTGTGAAAATTAAGTCAGAAGATAAGCCGTTGACTATTAATTGGAGCGAGAAGTTTGAATCTGATGGATTGGCTGCTAAGCTGGCAAGTGCCGACAGCTCTTTACTTATTGGATCATATCTGGATGTACCTATTGGACAAGAAATTAAAAATGCAGGTATGAGGAAGGCTACAGGGGGCAGTTGGCTGTCCGTTAGTCAAGGAATATCAGAGGATACCTCTGATCTTGTATCAGGTTTTGCTACAGTTGGTGACGGATTGAGTGAATCTGTTGATTATCCAAATGAATACTGGGACTCTGATGAATATGATGACGACGACGATGTTGGGTACATGAGACAACCTATTGAGGATGAGGCCTGGTTTTTGGCGCACGAAATCGATTACCCTAGTGACAATGAAAAGGGGACTGGGCATGGAAGCGTTCCAGATCCACAGGAAAGAGGTCCTGCCAAAGAGGAGGATGACGATCAATCTTTCGCGGAAGAGGATTCTTATTTCTCTGGAGAGCAATATCTTCAAGCAAAGAATGTTGAGCCGGTCATAGGGTCAGATGATCCTATCGGTATAACGGTTACTAATATGTATGGAAGGGCTAATGGTAATGATTTAATGGCTCAATACGATGGAGAATTGATGGATGTAGAGGAACTGAATCTGATGCACGCGGAGCCTGTCTGGCAGGGCTTTGTCCCTCAGACAAACGACCTGATCATGTTGGGAGATGGAAAAGTTCTGAATCATAGTGGAAGATCACGACTCGAGGAAATGGAAGATGATCAACACGGTTCAGTTAGGTCAATTGGGGTGGGTTTCAACAGTGATGCTGCCGATATCGGCAGTGAAGTGCATGGAAGTTTTATTGGTGGTAGCAGTGAAGGTGATTTAGAATATTTCCGTGATCGTGATAGTGGACTTGGGGGATCTAAACACACTCATCATGATTTTGGAAAGAATTCTATGGACAAATCATTTAAAAATAAGAAGAAAAATGATGAGATTGAGTCGAATAAATATGTCATTGGAGGTCATAAAGATGCTCACTCACAGATAAAAACACATACTGAAGGCAACTTTTCATTTCCTCAATCTCTTAAAGATAGCCAGATGATTCAGGGTGGTGGTTCCAGTAAGTCGCCATGGTTAAATAATTGTAATGCAGATGAAACCGATGACTGTATGAATGCTTTTGAGGGATCGGATGAAATGCTTTCTTTGTGGAGGCAGAAGAGTAGTGATTCTTCACCCGAGAAAAGTTCTAGGGATGAGAATAATGCTCATGCGGTCAGATCTTCGAACTCTTCTCCAACTACTGTCGATAATTACGGGTACGCTGATAAAGAGCATGTCAAGCTAGAAAAGGATGATGAAGAAGTTGACATTACAAGGGAAGATGATTTAGGTGTTTCACAAGAGGATGAAGAGATTGCTGCTGTGCAAGAGCAGGTAAGGCAAATAAAGGCTCAGGAGGAGGAATTTGAAACCTTCAATCTAAAGATTGTGCACAGGAAAAACAGAACTGGCTTTGAAGAGGACAAGAATTTCCATGTTGTTTTAAATTCTGTAATAGCTGGTCGCTATCATGTCACCGAGTATCTGGGATCTGCTGCATTTAGTAAAGCTATACAAGCTCATGACCTGCACACAGGCGTGGATGTTTGTATTAAAATTATAAAGAACAACAAGGATTTCTTTGATCAAAGCCTTGATGAGATCAAACTCCTCAAGTATGTCAATAAGCATGATCCTGGAGACAAGTATCACATTTTGCGGTTATATGATTATTTCTATTATAGAGAACATTTGTTAATAGTATGTGAGCTACTCAAAGCCAACTTATACGAGTTTCATAAATTCAACAGAGAATCAGGAGGGGAAGTGTACTTCACAATGCCAAGGTTGCAGTCAATTACCATTCAATGTTTGGAAGCACTTCAATATTTACATAATCTTGGACTAATACATTGTGACTTGAAGCCGGAGAATATTTTGGTTAAAAGCTACAGCCGATGTGAGGTGAAGGTCATTGATCTTGGAAGTAGTTGTTTTGAGACAGATCACCTTTGCTCATATGTTCAGTCTAGGTCCTATCGTGCTCCCGAGGTTATTCTCGGGCTTTCATACGACAAGAAGATTGATATCTGGTCCCTTGGGTGCATCTTGGCAGAACTTTGTACTGGCAATGTAAGTATGTCAATTCAGTTTCAAAATGCCATAAATATTTTCAAACTTAAGCATGTTAAGATTCATGTTAAATTCGTGTTGGAGGAAGTATCTGGTGGACAGGATTATTATGCTTTTTTGGGTGAAACTGTGAAAGCGGATATCGAATCTGTCTTATTTCAAAATGACTCCCCGGCAACATTACTTGCTAGGGTAATCGGGATCATCGGTCCAATTGGTCAAAGTATGCTAGCAAAAGGACGGGATACTTATAAGTACTTCACAAAAAATCATATGCTTTATGAGAGGAATCAGGAAAGCAACAGGTTAGAATACCTGATTCCAAAGAAGACATCTTTGAGGCATAGATTACCGATGGGGGACCAAGGCTTCATTGACTTTGTTGCTCATTTGCTCGAGGTTAACCCGAAGAAGCGACCTTCTGCATCTGAAGCTCTAAAGCACCCCTGGTTATCATACCCTTACGAACCGATATCATCTTGA

Protein sequence

>Msa0922490

MAETNSVDVILDFLKRNRFTRAEAALRSELNNCSDVNGILQKLTLDEKNLCDLSQNDKGKLVVENRGLDSRDSVEVSKELIVKEIECGTARNTTESKWKNATPAEERNKSNEVVGTSGTNFTFLKSSEDSVFDLQSWKINGPAEPYQNDGASKASNTSKASISQQSRTQMSEGSISQQLKTSMSEAAISQQSKTQTSEAFDAANSNVKNAVENNVPDEKKPLWLGSSGKASTEPKINLVQNKESREIDRQQLKFSSSSLKENLADNVLSRADENANSSSDIWKDCSIKTVFPFSKGDVSTSYSSSTYSEKVDEKRKPEIGDAKAYIKEQVDEVGRAFYLGKLQGSSEQNNIGGLSFPLALEKQKEEYPRLPPVKIKSEDKPLTINWSEKFESDGLAAKLASADSSLLIGSYLDVPIGQEIKNAGMRKATGGSWLSVSQGISEDTSDLVSGFATVGDGLSESVDYPNEYWDSDEYDDDDDVGYMRQPIEDEAWFLAHEIDYPSDNEKGTGHGSVPDPQERGPAKEEDDDQSFAEEDSYFSGEQYLQAKNVEPVIGSDDPIGITVTNMYGRANGNDLMAQYDGELMDVEELNLMHAEPVWQGFVPQTNDLIMLGDGKVLNHSGRSRLEEMEDDQHGSVRSIGVGFNSDAADIGSEVHGSFIGGSSEGDLEYFRDRDSGLGGSKHTHHDFGKNSMDKSFKNKKKNDEIESNKYVIGGHKDAHSQIKTHTEGNFSFPQSLKDSQMIQGGGSSKSPWLNNCNADETDDCMNAFEGSDEMLSLWRQKSSDSSPEKSSRDENNAHAVRSSNSSPTTVDNYGYADKEHVKLEKDDEEVDITREDDLGVSQEDEEIAAVQEQVRQIKAQEEEFETFNLKIVHRKNRTGFEEDKNFHVVLNSVIAGRYHVTEYLGSAAFSKAIQAHDLHTGVDVCIKIIKNNKDFFDQSLDEIKLLKYVNKHDPGDKYHILRLYDYFYYREHLLIVCELLKANLYEFHKFNRESGGEVYFTMPRLQSITIQCLEALQYLHNLGLIHCDLKPENILVKSYSRCEVKVIDLGSSCFETDHLCSYVQSRSYRAPEVILGLSYDKKIDIWSLGCILAELCTGNVSMSIQFQNAINIFKLKHVKIHVKFVLEEVSGGQDYYAFLGETVKADIESVLFQNDSPATLLARVIGIIGPIGQSMLAKGRDTYKYFTKNHMLYERNQESNRLEYLIPKKTSLRHRLPMGDQGFIDFVAHLLEVNPKKRPSASEALKHPWLSYPYEPISS*