Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0922760 | QSD99637.1 | 91.322 | 484 | 41 | 1 | 17 | 499 | 26 | 509 | 0.0 | 879 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0922760 | sp|B3H5A8|RVE7_ARATH | 43.464 | 306 | 105 | 9 | 74 | 373 | 65 | 308 | 8.38e-56 | 193 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0922760 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0922760 | MtrunA17_Chr6g0481061 | 94.268 | 471 | 23 | 2 | 29 | 499 | 1 | 467 | 0.0 | 871 |
| Msa0922760 | MtrunA17_Chr5g0433851 | 35.903 | 454 | 216 | 13 | 63 | 497 | 21 | 418 | 2.94e-55 | 190 |
| Msa0922760 | MtrunA17_Chr3g0109791 | 48.077 | 260 | 120 | 5 | 51 | 308 | 23 | 269 | 9.19e-55 | 187 |
| Msa0922760 | MtrunA17_Chr1g0181771 | 56.250 | 112 | 38 | 3 | 66 | 177 | 28 | 128 | 2.67e-34 | 130 |
| Msa0922760 | MtrunA17_Chr6g0469431 | 54.783 | 115 | 41 | 4 | 74 | 186 | 39 | 144 | 9.26e-33 | 124 |
| Msa0922760 | MtrunA17_Chr8g0348391 | 60.638 | 94 | 29 | 2 | 74 | 167 | 53 | 138 | 1.58e-32 | 127 |
| Msa0922760 | MtrunA17_Chr7g0276421 | 68.269 | 104 | 31 | 1 | 66 | 167 | 7 | 110 | 2.64e-31 | 128 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0922760 | AT1G18330.2 | 43.464 | 306 | 105 | 9 | 74 | 373 | 65 | 308 | 8.52e-57 | 193 |
| Msa0922760 | AT1G18330.1 | 43.464 | 306 | 105 | 9 | 74 | 373 | 39 | 282 | 1.01e-56 | 192 |
| Msa0922760 | AT5G17300.1 | 51.867 | 241 | 77 | 7 | 68 | 308 | 38 | 239 | 4.81e-52 | 181 |
| Msa0922760 | AT3G10113.1 | 66.667 | 135 | 36 | 1 | 74 | 208 | 54 | 179 | 2.64e-45 | 162 |
| Msa0922760 | AT5G37260.1 | 55.814 | 172 | 61 | 3 | 61 | 232 | 12 | 168 | 3.70e-44 | 157 |
| Msa0922760 | AT3G09600.1 | 60.638 | 94 | 29 | 2 | 74 | 167 | 32 | 117 | 2.59e-32 | 125 |
| Msa0922760 | AT3G09600.7 | 60.638 | 94 | 29 | 2 | 74 | 167 | 32 | 117 | 2.59e-32 | 125 |
| Msa0922760 | AT3G09600.2 | 60.638 | 94 | 29 | 2 | 74 | 167 | 32 | 117 | 2.99e-32 | 125 |
| Msa0922760 | AT3G09600.6 | 60.638 | 94 | 29 | 2 | 74 | 167 | 32 | 117 | 2.99e-32 | 125 |
| Msa0922760 | AT3G09600.4 | 60.638 | 94 | 29 | 2 | 74 | 167 | 32 | 117 | 3.27e-32 | 125 |
| Msa0922760 | AT5G52660.1 | 59.184 | 98 | 32 | 2 | 70 | 167 | 57 | 146 | 2.05e-31 | 124 |
| Msa0922760 | AT5G52660.2 | 59.184 | 98 | 32 | 2 | 70 | 167 | 57 | 146 | 2.07e-31 | 124 |
| Msa0922760 | AT1G01520.1 | 59.574 | 94 | 30 | 2 | 74 | 167 | 50 | 135 | 9.75e-31 | 121 |
| Msa0922760 | AT1G01520.3 | 59.574 | 94 | 30 | 2 | 74 | 167 | 50 | 135 | 1.10e-30 | 120 |
| Msa0922760 | AT1G01520.2 | 59.574 | 94 | 30 | 2 | 74 | 167 | 50 | 135 | 1.10e-30 | 120 |
| Msa0922760 | AT1G01520.4 | 59.574 | 94 | 30 | 2 | 74 | 167 | 50 | 135 | 1.10e-30 | 120 |
| Msa0922760 | AT4G01280.2 | 60.638 | 94 | 29 | 2 | 74 | 167 | 48 | 133 | 2.59e-30 | 120 |
| Msa0922760 | AT5G02840.3 | 58.511 | 94 | 31 | 2 | 74 | 167 | 37 | 122 | 2.95e-30 | 119 |
| Msa0922760 | AT5G02840.1 | 58.511 | 94 | 31 | 2 | 74 | 167 | 37 | 122 | 3.22e-30 | 119 |
| Msa0922760 | AT5G02840.2 | 58.511 | 94 | 31 | 2 | 74 | 167 | 37 | 122 | 3.22e-30 | 119 |
| Msa0922760 | AT1G01060.8 | 58.491 | 106 | 42 | 1 | 63 | 166 | 2 | 107 | 3.56e-30 | 124 |
| Msa0922760 | AT1G01060.2 | 58.491 | 106 | 42 | 1 | 63 | 166 | 2 | 107 | 3.56e-30 | 124 |
| Msa0922760 | AT1G01060.3 | 58.491 | 106 | 42 | 1 | 63 | 166 | 2 | 107 | 3.56e-30 | 124 |
| Msa0922760 | AT1G01060.1 | 58.491 | 106 | 42 | 1 | 63 | 166 | 2 | 107 | 3.56e-30 | 124 |
| Msa0922760 | AT1G01060.7 | 58.491 | 106 | 42 | 1 | 63 | 166 | 2 | 107 | 3.56e-30 | 124 |
| Msa0922760 | AT1G01060.4 | 58.491 | 106 | 42 | 1 | 63 | 166 | 2 | 107 | 3.58e-30 | 124 |
| Msa0922760 | AT5G02840.4 | 58.511 | 94 | 31 | 2 | 74 | 167 | 37 | 122 | 4.01e-30 | 119 |
| Msa0922760 | AT5G02840.5 | 58.511 | 94 | 31 | 2 | 74 | 167 | 37 | 122 | 5.64e-30 | 119 |
| Msa0922760 | AT2G46830.1 | 63.529 | 85 | 31 | 0 | 66 | 150 | 5 | 89 | 8.82e-30 | 123 |
| Msa0922760 | AT4G01280.1 | 39.487 | 195 | 81 | 5 | 74 | 268 | 48 | 205 | 9.41e-30 | 119 |
| Msa0922760 | AT5G17300.2 | 59.322 | 118 | 37 | 3 | 110 | 227 | 5 | 111 | 1.63e-21 | 95.5 |
| Msa0922760 | AT3G09600.3 | 50.769 | 65 | 24 | 2 | 103 | 167 | 5 | 61 | 7.81e-15 | 74.7 |
| Msa0922760 | AT3G09600.8 | 50.769 | 65 | 24 | 2 | 103 | 167 | 5 | 61 | 7.81e-15 | 74.7 |
| Msa0922760 | AT3G09600.5 | 50.769 | 65 | 24 | 2 | 103 | 167 | 5 | 61 | 1.12e-14 | 73.9 |
| Msa0922760 | AT3G09600.9 | 50.769 | 65 | 24 | 2 | 103 | 167 | 5 | 61 | 1.12e-14 | 73.9 |
Find 133 sgRNAs with CRISPR-Local
Find 308 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGAGGCTTTGAAACTTTA+TGG | 0.189979 | 6_2:+62231935 | Msa0922760:CDS |
| CTGATATTGTTAGGGTGTTC+TGG | 0.237816 | 6_2:+62230050 | Msa0922760:CDS |
| CTCTTCCTCCTCAGATGGTT+TGG | 0.248334 | 6_2:-62232673 | None:intergenic |
| CATATTTGCAGCATCTTCTT+TGG | 0.255626 | 6_2:-62233161 | None:intergenic |
| TCAAGAACTTCCTGAGAATA+AGG | 0.264997 | 6_2:+62233841 | Msa0922760:three_prime_UTR |
| TCGAATCTGAACTGCAGTTT+TGG | 0.267753 | 6_2:-62232089 | None:intergenic |
| TTCTGCAATGGACAGGTTAA+TGG | 0.270859 | 6_2:-62232481 | None:intergenic |
| CCTCAGATGGTTTGGATGTC+TGG | 0.272930 | 6_2:-62232665 | None:intergenic |
| GTTTGGTCGAACACTATCTA+TGG | 0.282785 | 6_2:+62233207 | Msa0922760:CDS |
| TTCTTAATCCTGTGCCTCTT+AGG | 0.290915 | 6_2:+62233506 | Msa0922760:CDS |
| CTTTGTTTAGTGATGGTATA+CGG | 0.298682 | 6_2:-62231878 | None:intergenic |
| GATGAAAATTCTTTAATTGC+TGG | 0.298848 | 6_2:+62233733 | Msa0922760:CDS |
| GGAGATGTTTCTGATTCATT+TGG | 0.303011 | 6_2:-62232456 | None:intergenic |
| ATCTCGGTGGTGCAAGAATT+TGG | 0.321806 | 6_2:-62232600 | None:intergenic |
| TGGTGGCAGCTGATATTGTT+AGG | 0.340024 | 6_2:+62230041 | Msa0922760:intron |
| CACTGAATCAGTCTGCGATA+TGG | 0.346626 | 6_2:+62233582 | Msa0922760:CDS |
| CACCAACTCAAAACCACTTA+TGG | 0.354311 | 6_2:+62232725 | Msa0922760:CDS |
| ACCCTCTTCCAGATTTCTTA+AGG | 0.359010 | 6_2:-62233678 | None:intergenic |
| GTTCAAGGCACAAAGTTAAC+TGG | 0.364558 | 6_2:+62231424 | Msa0922760:CDS |
| AATCTTCATGCAGAACATAT+AGG | 0.364568 | 6_2:+62232064 | Msa0922760:intron |
| GAAAACAACAAAAGATTTGC+TGG | 0.370394 | 6_2:-62234030 | None:intergenic |
| GAGATGTTTCTGATTCATTT+GGG | 0.373672 | 6_2:-62232455 | None:intergenic |
| GGAGTTGTCCTTAAGAAATC+TGG | 0.375864 | 6_2:+62233670 | Msa0922760:CDS |
| AGCTATCAACTCTAATGAAA+TGG | 0.384116 | 6_2:+62233276 | Msa0922760:CDS |
| TTTGTTTGTGTCATAACAAT+TGG | 0.385084 | 6_2:+62234171 | Msa0922760:three_prime_UTR |
| ATCACTAGTATTAAGCTGTT+TGG | 0.389280 | 6_2:+62233190 | Msa0922760:CDS |
| ACTGCGCAACTTTACCGTTA+TGG | 0.398656 | 6_2:+62233431 | Msa0922760:CDS |
| CCTTTCTCTTCCTCCTCAGA+TGG | 0.401101 | 6_2:-62232678 | None:intergenic |
| TTCAGACTGTGATCCACCTT+TGG | 0.402680 | 6_2:-62231467 | None:intergenic |
| GGTATGTCAATTGGCTGAAT+AGG | 0.403494 | 6_2:-62232357 | None:intergenic |
| GGATGAAGGGGTTTCCTCTT+CGG | 0.405395 | 6_2:-62232390 | None:intergenic |
| TCACTAAACAAAGGGAGAAA+TGG | 0.418116 | 6_2:+62231888 | Msa0922760:CDS |
| AAATTCTTTAATTGCTGGCT+TGG | 0.424959 | 6_2:+62233738 | Msa0922760:CDS |
| GAGTTTGTACCAAGGCCTTC+CGG | 0.426382 | 6_2:+62233453 | Msa0922760:CDS |
| ATCTTCATGCAGAACATATA+GGG | 0.428042 | 6_2:+62232065 | Msa0922760:intron |
| TAATTGCTGGCTTGGAAGAA+AGG | 0.428931 | 6_2:+62233746 | Msa0922760:CDS |
| TTCCTCTTCGGCCGAGGAGG+AGG | 0.434146 | 6_2:-62232378 | None:intergenic |
| CTGCTCACTTGAGCTCCATC+AGG | 0.436145 | 6_2:-62233373 | None:intergenic |
| CTGACATATGCATTCTCCTT+CGG | 0.437464 | 6_2:-62233406 | None:intergenic |
| GGACTTTCGGCACTGCCATC+AGG | 0.440425 | 6_2:-62232336 | None:intergenic |
| TGTACTATCTGCACTTGGTT+CGG | 0.448970 | 6_2:+62232527 | Msa0922760:CDS |
| TCAACTGATTTGCGAGGGTA+TGG | 0.453549 | 6_2:-62232411 | None:intergenic |
| AATTGGCTGAATAGGACTTT+CGG | 0.455251 | 6_2:-62232349 | None:intergenic |
| TGTGGAAAGCCGGAAGGCCT+TGG | 0.456419 | 6_2:-62233462 | None:intergenic |
| TAAATCAGTTCCTTATTCTC+AGG | 0.457101 | 6_2:-62233851 | None:intergenic |
| TTTCTCCCTTTGTTTAGTGA+TGG | 0.457327 | 6_2:-62231885 | None:intergenic |
| CGAGGAGGAGGTATGTCAAT+TGG | 0.460852 | 6_2:-62232366 | None:intergenic |
| TAGTACAGAGGTTGGCGATT+GGG | 0.463543 | 6_2:-62232511 | None:intergenic |
| TACTTGGTTGCAGGTTGTGC+GGG | 0.465937 | 6_2:+62232311 | Msa0922760:intron |
| TGGATGATCTTGAGAAGGTT+GGG | 0.471398 | 6_2:+62233296 | Msa0922760:CDS |
| ATTGTTAGGGTGTTCTGGAT+TGG | 0.473286 | 6_2:+62230055 | Msa0922760:CDS |
| TGAATGTAGGATCAAGTTCA+AGG | 0.473815 | 6_2:+62231409 | Msa0922760:intron |
| TGAAACTTTATGGTCGTGGC+TGG | 0.477388 | 6_2:+62231945 | Msa0922760:CDS |
| AGCTTAATACTAGTGATTTG+TGG | 0.477782 | 6_2:-62233184 | None:intergenic |
| GAAGATAATAGCAAGAGAAG+AGG | 0.482480 | 6_2:+62233537 | Msa0922760:CDS |
| CGGAAACAACCTTGCTCCCA+AGG | 0.482656 | 6_2:+62231522 | Msa0922760:CDS |
| ATTTGCGAGGGTATGGATGA+AGG | 0.487003 | 6_2:-62232404 | None:intergenic |
| ATCTTCAAACAAGGCCTAAG+AGG | 0.488954 | 6_2:-62233520 | None:intergenic |
| AATTGCTGGCTTGGAAGAAA+GGG | 0.495973 | 6_2:+62233747 | Msa0922760:CDS |
| AGGGGTTTCCTCTTCGGCCG+AGG | 0.499231 | 6_2:-62232384 | None:intergenic |
| TATCATACCATGGCCATAAG+TGG | 0.502925 | 6_2:-62232738 | None:intergenic |
| GCTTTGAAACTTTATGGTCG+TGG | 0.505823 | 6_2:+62231941 | Msa0922760:CDS |
| CGTGGCTGGCGTCAAATTGA+AGG | 0.507871 | 6_2:+62231959 | Msa0922760:CDS |
| GGTGGCAGCTGATATTGTTA+GGG | 0.511816 | 6_2:+62230042 | Msa0922760:intron |
| CAACAGGTGACAAGCTGACC+GGG | 0.515360 | 6_2:-62232626 | None:intergenic |
| ATTTGCTACAATGGAGACTA+AGG | 0.515528 | 6_2:+62230084 | Msa0922760:CDS |
| GCACTTGGTTCGGAAGCGTT+CGG | 0.515966 | 6_2:+62232537 | Msa0922760:CDS |
| TCAACAGGTGACAAGCTGAC+CGG | 0.517384 | 6_2:-62232627 | None:intergenic |
| CTAGGCATGTGCACACCTGA+TGG | 0.520012 | 6_2:+62233358 | Msa0922760:CDS |
| CTACTTGGTTGCAGGTTGTG+CGG | 0.522684 | 6_2:+62232310 | Msa0922760:intron |
| CAAGCTGACCGGGTGAATCT+CGG | 0.528860 | 6_2:-62232616 | None:intergenic |
| TTAAGAATTTGATGATTGCA+TGG | 0.529235 | 6_2:-62233490 | None:intergenic |
| ATGGATGATCTTGAGAAGGT+TGG | 0.536503 | 6_2:+62233295 | Msa0922760:CDS |
| TTTGGTCGAACACTATCTAT+GGG | 0.537064 | 6_2:+62233208 | Msa0922760:CDS |
| CCATCTGAGGAGGAAGAGAA+AGG | 0.537629 | 6_2:+62232678 | Msa0922760:CDS |
| GCAAGGTTGTTTCCGACAGA+AGG | 0.537798 | 6_2:-62231514 | None:intergenic |
| TTGCGAGGGTATGGATGAAG+GGG | 0.537852 | 6_2:-62232402 | None:intergenic |
| TTTGCGAGGGTATGGATGAA+GGG | 0.538270 | 6_2:-62232403 | None:intergenic |
| GTCCTTAAGAAATCTGGAAG+AGG | 0.539236 | 6_2:+62233676 | Msa0922760:CDS |
| TGGCTCTGAATTTGCTACAA+TGG | 0.539722 | 6_2:+62230075 | Msa0922760:CDS |
| GTATACCATCACTAAACAAA+GGG | 0.540490 | 6_2:+62231880 | Msa0922760:CDS |
| GTAAAACAACCTTGGGAGCA+AGG | 0.542630 | 6_2:-62231531 | None:intergenic |
| CTCAAAACCACTTATGGCCA+TGG | 0.544250 | 6_2:+62232731 | Msa0922760:CDS |
| GTCCGAGGTTATTTCTTCTG+AGG | 0.544722 | 6_2:+62233126 | Msa0922760:CDS |
| TGACTCTTTCAAAGGACAGT+TGG | 0.545667 | 6_2:+62232431 | Msa0922760:CDS |
| ACCTCTGTACTATCTGCACT+TGG | 0.545955 | 6_2:+62232522 | Msa0922760:CDS |
| CTTGCTATTATCTTCAAACA+AGG | 0.551156 | 6_2:-62233529 | None:intergenic |
| AAACAAGGCCTAAGAGGCAC+AGG | 0.552171 | 6_2:-62233514 | None:intergenic |
| ATAGTACAGAGGTTGGCGAT+TGG | 0.554019 | 6_2:-62232512 | None:intergenic |
| GGTTTCCTCTTCGGCCGAGG+AGG | 0.557391 | 6_2:-62232381 | None:intergenic |
| AAATCAGTTGACTCTTTCAA+AGG | 0.561001 | 6_2:+62232423 | Msa0922760:CDS |
| TGAAAATGATGCTAAGTCGC+AGG | 0.563551 | 6_2:+62231486 | Msa0922760:CDS |
| TCCTTAAGAAATCTGGAAGA+GGG | 0.563781 | 6_2:+62233677 | Msa0922760:CDS |
| CGTGATTGAATCAATGATTG+AGG | 0.575845 | 6_2:+62234099 | Msa0922760:three_prime_UTR |
| GAAGAGGAAAGCTCTTGCAC+TGG | 0.577825 | 6_2:+62233553 | Msa0922760:CDS |
| TACCTCCTCCTCGGCCGAAG+AGG | 0.581749 | 6_2:+62232376 | Msa0922760:CDS |
| CGTATACCATCACTAAACAA+AGG | 0.584691 | 6_2:+62231879 | Msa0922760:CDS |
| AAAAGAATTGAAAATCATAG+AGG | 0.586594 | 6_2:-62233908 | None:intergenic |
| GGGTTCTCAGAAGTCAATGA+AGG | 0.589070 | 6_2:+62233228 | Msa0922760:CDS |
| ATCGCAGACTGATTCAGTGT+TGG | 0.591356 | 6_2:-62233578 | None:intergenic |
| CCAGACATCCAAACCATCTG+AGG | 0.593425 | 6_2:+62232665 | Msa0922760:CDS |
| TCAATGATTGAGGTGCAAGA+AGG | 0.593527 | 6_2:+62234109 | Msa0922760:three_prime_UTR |
| ACTGTGATCCACCTTTGGAA+TGG | 0.594883 | 6_2:-62231462 | None:intergenic |
| CAGGTTGTGCGGGAACCTGA+TGG | 0.598426 | 6_2:+62232321 | Msa0922760:intron |
| TTGCACCACCGAGATTCACC+CGG | 0.599354 | 6_2:+62232608 | Msa0922760:CDS |
| CTTGATACAGAATTATCACT+AGG | 0.603577 | 6_2:+62233340 | Msa0922760:CDS |
| AGTAAGTGCCATTCCAAAGG+TGG | 0.606494 | 6_2:+62231454 | Msa0922760:CDS |
| CATGGCATGATGTGGAAAGC+CGG | 0.608702 | 6_2:-62233472 | None:intergenic |
| GATGATTGCATGGCATGATG+TGG | 0.610189 | 6_2:-62233480 | None:intergenic |
| TCATTTGCAATATATTACAA+AGG | 0.616150 | 6_2:-62233950 | None:intergenic |
| GCAATGGACAGGTTAATGGA+TGG | 0.616995 | 6_2:-62232477 | None:intergenic |
| CCTTGGTACAAACTCCATAA+CGG | 0.619317 | 6_2:-62233445 | None:intergenic |
| AAGAATTTGGAGAAAGACAT+CGG | 0.624708 | 6_2:-62232587 | None:intergenic |
| AAGAGTCAACTGATTTGCGA+GGG | 0.626425 | 6_2:-62232416 | None:intergenic |
| CATAAAGTTTCAAAGCCTCA+AGG | 0.629397 | 6_2:-62231934 | None:intergenic |
| GCTAGTAAGTGCCATTCCAA+AGG | 0.631426 | 6_2:+62231451 | Msa0922760:CDS |
| GCATGATGTGGAAAGCCGGA+AGG | 0.633310 | 6_2:-62233468 | None:intergenic |
| AGTGCAGATAGTACAGAGGT+TGG | 0.636802 | 6_2:-62232519 | None:intergenic |
| AAAGAGTCAACTGATTTGCG+AGG | 0.637562 | 6_2:-62232417 | None:intergenic |
| GACATCCAAACCATCTGAGG+AGG | 0.638275 | 6_2:+62232668 | Msa0922760:CDS |
| TGGAGCTCAAGTGAGCAGCA+TGG | 0.641800 | 6_2:+62233378 | Msa0922760:CDS |
| TCGCAGGATATACCTTCTGT+CGG | 0.642530 | 6_2:+62231502 | Msa0922760:CDS |
| TTCCTCAGAAGAAATAACCT+CGG | 0.645452 | 6_2:-62233128 | None:intergenic |
| TGTGTTATGGCAGAAGTCCG+AGG | 0.646333 | 6_2:+62233111 | Msa0922760:intron |
| CAATTGACATACCTCCTCCT+CGG | 0.655187 | 6_2:+62232367 | Msa0922760:CDS |
| TGAAATGGATGATCTTGAGA+AGG | 0.659901 | 6_2:+62233291 | Msa0922760:CDS |
| TGAGGTGCAAGAAGGAAACA+TGG | 0.663119 | 6_2:+62234117 | Msa0922760:three_prime_UTR |
| GAGCAGCATGGAACAACCGA+AGG | 0.671244 | 6_2:+62233390 | Msa0922760:CDS |
| CCGTTATGGAGTTTGTACCA+AGG | 0.672342 | 6_2:+62233445 | Msa0922760:CDS |
| GCTGGCTTGGAAGAAAGGGA+AGG | 0.684609 | 6_2:+62233751 | Msa0922760:CDS |
| AGAGCATCAAAAGTTCCTTG+AGG | 0.696601 | 6_2:+62231919 | Msa0922760:CDS |
| GCTGACCGGGTGAATCTCGG+TGG | 0.721988 | 6_2:-62232613 | None:intergenic |
| ACCAAGTGCAGATAGTACAG+AGG | 0.725278 | 6_2:-62232523 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGTTTTTTAATAATGAAAA+AGG | - | chr6_2:62229025-62229044 | None:intergenic | 10.0% |
| !! | AAACTGATTAATTAAAATAT+GGG | - | chr6_2:62229180-62229199 | None:intergenic | 10.0% |
| !! | AAAACTGATTAATTAAAATA+TGG | - | chr6_2:62229181-62229200 | None:intergenic | 10.0% |
| !! | ATTAAAAAAATGAAGAAAAA+TGG | - | chr6_2:62229824-62229843 | None:intergenic | 10.0% |
| !!! | TTATTAAAACAATTTTTGTT+TGG | + | chr6_2:62229845-62229864 | Msa0922760:intron | 10.0% |
| !!! | TAAAAAAGTTTTATAGAAAA+TGG | + | chr6_2:62230550-62230569 | Msa0922760:intron | 10.0% |
| !! | TCTCAAATAATAAATTAATA+TGG | + | chr6_2:62230609-62230628 | Msa0922760:intron | 10.0% |
| !! | AAAAAAAGACAATTGAAATA+TGG | - | chr6_2:62228903-62228922 | None:intergenic | 15.0% |
| !! | TAGATTACTTAAAAAAAAGT+AGG | - | chr6_2:62229103-62229122 | None:intergenic | 15.0% |
| !!! | AAATATGGGATTTTTTAATA+TGG | - | chr6_2:62229166-62229185 | None:intergenic | 15.0% |
| !! | AAAAAAACAATAAGTCAAAA+AGG | + | chr6_2:62229263-62229282 | Msa0922760:intron | 15.0% |
| !! | AAAAAACAATAAGTCAAAAA+GGG | + | chr6_2:62229264-62229283 | Msa0922760:intron | 15.0% |
| !! | AATTGGTAAAAAGAAAATTT+GGG | - | chr6_2:62229368-62229387 | None:intergenic | 15.0% |
| !! | AAATTGGTAAAAAGAAAATT+TGG | - | chr6_2:62229369-62229388 | None:intergenic | 15.0% |
| !! | AAATGTAAAAGAAATTTCTA+AGG | - | chr6_2:62229500-62229519 | None:intergenic | 15.0% |
| !!! | AATAAAAGTGTATTCAAAAA+AGG | - | chr6_2:62230139-62230158 | None:intergenic | 15.0% |
| !!! | TCTATAAATTAACCTTATTT+AGG | - | chr6_2:62230888-62230907 | None:intergenic | 15.0% |
| !! | CACTTAAAAAAAAATCATTA+TGG | - | chr6_2:62231567-62231586 | None:intergenic | 15.0% |
| !! | ATGAACATTGTAAAAAAATA+TGG | - | chr6_2:62233811-62233830 | None:intergenic | 15.0% |
| !!! | TTTAGATTTTTCTTAACAAG+CGG | + | chr6_2:62228828-62228847 | Msa0922760:intron | 20.0% |
| !! | AACACAAACAAAATATGTTT+AGG | - | chr6_2:62228859-62228878 | None:intergenic | 20.0% |
| !! | AAACACAAATAAATAGTGTT+TGG | - | chr6_2:62229063-62229082 | None:intergenic | 20.0% |
| !! | AAAATTGAGACTTACAAAAT+CGG | + | chr6_2:62229770-62229789 | Msa0922760:intron | 20.0% |
| !! | GATTAAATAACTGATATATC+TGG | + | chr6_2:62230249-62230268 | Msa0922760:intron | 20.0% |
| !!! | TTTTTCAGTTCATTGAATAA+CGG | + | chr6_2:62230297-62230316 | Msa0922760:intron | 20.0% |
| !!! | ATTTGTGTTTGTACTTTTTA+AGG | + | chr6_2:62230460-62230479 | Msa0922760:intron | 20.0% |
| !!! | AAGTTTTATAGAAAATGGAT+TGG | + | chr6_2:62230555-62230574 | Msa0922760:intron | 20.0% |
| !!! | AAAAAAATCATTATGGATTG+TGG | - | chr6_2:62231560-62231579 | None:intergenic | 20.0% |
| !! | TTGAAATTGAAATACATTTC+AGG | - | chr6_2:62231846-62231865 | None:intergenic | 20.0% |
| !! | AAATGTATTTCAATTTCAAC+AGG | + | chr6_2:62231847-62231866 | Msa0922760:intron | 20.0% |
| !!! | TGTAGATTTGGATTTTTAAT+TGG | + | chr6_2:62232194-62232213 | Msa0922760:intron | 20.0% |
| !!! | GATTTTTAATTGGACTATAA+AGG | + | chr6_2:62232204-62232223 | Msa0922760:intron | 20.0% |
| !!! | ATATTCTTTGATTTAGCTTA+TGG | + | chr6_2:62232770-62232789 | Msa0922760:intron | 20.0% |
| !!! | AATAATTTATGACACTGTTT+TGG | + | chr6_2:62232862-62232881 | Msa0922760:intron | 20.0% |
| !! | TATAGAAATAAATTGTACAC+AGG | + | chr6_2:62233007-62233026 | Msa0922760:intron | 20.0% |
| !! | ATTTCAAAACTAGTAAGATA+TGG | - | chr6_2:62233086-62233105 | None:intergenic | 20.0% |
| !!! | TTTGAAATTATCTTGTGTTA+TGG | + | chr6_2:62233098-62233117 | Msa0922760:intron | 20.0% |
| !! | AAAAGAATTGAAAATCATAG+AGG | - | chr6_2:62233911-62233930 | None:intergenic | 20.0% |
| !! | TCATTTGCAATATATTACAA+AGG | - | chr6_2:62233953-62233972 | None:intergenic | 20.0% |
| !! | TGATACAGCAAAAAAATTAT+TGG | - | chr6_2:62233979-62233998 | None:intergenic | 20.0% |
| !!! | ATTTTACAGTTCAATCAAAT+TGG | + | chr6_2:62233998-62234017 | Msa0922760:three_prime_UTR | 20.0% |
| !!! | AACCACTTTTTGACAATTTT+TGG | - | chr6_2:62228776-62228795 | None:intergenic | 25.0% |
| !! | TTAGATTTTTCTTAACAAGC+GGG | + | chr6_2:62228829-62228848 | Msa0922760:intron | 25.0% |
| !! | GTAAAAGAAATTTCTAAGGA+GGG | - | chr6_2:62229496-62229515 | None:intergenic | 25.0% |
| !! | TGTAAAAGAAATTTCTAAGG+AGG | - | chr6_2:62229497-62229516 | None:intergenic | 25.0% |
| !! | TATTGATGTGATCTTTCTTT+TGG | + | chr6_2:62230007-62230026 | Msa0922760:intron | 25.0% |
| !! | TGCATTTTCTCAAAAAAGTA+AGG | + | chr6_2:62230175-62230194 | Msa0922760:intron | 25.0% |
| !! | CTCAACAAAAATATCTTTTC+AGG | + | chr6_2:62230220-62230239 | Msa0922760:intron | 25.0% |
| ! | ATTTGATTCTATATGAGACT+AGG | + | chr6_2:62230360-62230379 | Msa0922760:intron | 25.0% |
| ! | TTTGATTCTATATGAGACTA+GGG | + | chr6_2:62230361-62230380 | Msa0922760:intron | 25.0% |
| !!! | TGTGTATTTGTAGAGTATTT+TGG | + | chr6_2:62230513-62230532 | Msa0922760:intron | 25.0% |
| ! | AAACCAAAAGATAAAGACAA+GGG | - | chr6_2:62231344-62231363 | None:intergenic | 25.0% |
| !!! | TCAATTTTTTGTTGTCGAAA+CGG | + | chr6_2:62231363-62231382 | Msa0922760:intron | 25.0% |
| ! | TTCAAAATGTTGTGAAATAG+CGG | + | chr6_2:62231691-62231710 | Msa0922760:intron | 25.0% |
| ! | TATTTCAATTTCAACAGGTT+AGG | + | chr6_2:62231852-62231871 | Msa0922760:intron | 25.0% |
| ! | TTATATCTAACTAGAAGACA+TGG | - | chr6_2:62232035-62232054 | None:intergenic | 25.0% |
| !! | TAATTATTGCTTGCTAATGA+AGG | + | chr6_2:62232164-62232183 | Msa0922760:intron | 25.0% |
| ! | GAAGGTTATAAATGTAGATT+TGG | + | chr6_2:62232182-62232201 | Msa0922760:intron | 25.0% |
| ! | TTAATTGGACTATAAAGGAA+AGG | + | chr6_2:62232209-62232228 | Msa0922760:intron | 25.0% |
| ! | CAATAACTTAATAAACACGA+AGG | + | chr6_2:62232247-62232266 | Msa0922760:intron | 25.0% |
| !!! | CAATCATTTTCTTTTTCAAC+AGG | - | chr6_2:62232645-62232664 | None:intergenic | 25.0% |
| ! | AAAACTAGTAAGATATGGTT+TGG | - | chr6_2:62233081-62233100 | None:intergenic | 25.0% |
| !! | TTAAGAATTTGATGATTGCA+TGG | - | chr6_2:62233493-62233512 | None:intergenic | 25.0% |
| !!! | TTTTTGAGTTTGAGAATCAT+CGG | - | chr6_2:62233638-62233657 | None:intergenic | 25.0% |
| !! | TCAGCTAAACATCTTTTATA+TGG | - | chr6_2:62233709-62233728 | None:intergenic | 25.0% |
| ! | GATGAAAATTCTTTAATTGC+TGG | + | chr6_2:62233733-62233752 | Msa0922760:CDS | 25.0% |
| ! | TTTGTTTGTGTCATAACAAT+TGG | + | chr6_2:62234171-62234190 | Msa0922760:three_prime_UTR | 25.0% |
| GTCCAAAAATTGTCAAAAAG+TGG | + | chr6_2:62228771-62228790 | Msa0922760:intron | 30.0% | |
| AATATGGAGAAAGTCTAACT+TGG | - | chr6_2:62228887-62228906 | None:intergenic | 30.0% | |
| GTAATCTACAAAAGCTTAGT+TGG | + | chr6_2:62229115-62229134 | Msa0922760:intron | 30.0% | |
| ! | TTTGTTGCTTCTCATATTGT+TGG | - | chr6_2:62229143-62229162 | None:intergenic | 30.0% |
| !! | GGTGGTTTAGATTTTATTTG+TGG | - | chr6_2:62229347-62229366 | None:intergenic | 30.0% |
| TGGTAAAAAGAAAATTTGGG+TGG | - | chr6_2:62229365-62229384 | None:intergenic | 30.0% | |
| TTCTCTCCAAATTATTCATC+TGG | + | chr6_2:62229689-62229708 | Msa0922760:intron | 30.0% | |
| TCTCTCCAAATTATTCATCT+GGG | + | chr6_2:62229690-62229709 | Msa0922760:intron | 30.0% | |
| !!! | TAGAGTATTTTGGTTCCATA+GGG | + | chr6_2:62230523-62230542 | Msa0922760:intron | 30.0% |
| !!! | AAACTTTTTTAGCTTCCCTA+TGG | - | chr6_2:62230541-62230560 | None:intergenic | 30.0% |
| TAGTTGAGTCGTAATTTGAT+CGG | + | chr6_2:62230632-62230651 | Msa0922760:intron | 30.0% | |
| !!! | TGGTTCGGTTTTTAAAACAT+CGG | - | chr6_2:62230763-62230782 | None:intergenic | 30.0% |
| ACATGAAATCATCTAGACTT+TGG | + | chr6_2:62230696-62230715 | Msa0922760:intron | 30.0% | |
| GTTCAATTGTTTGAATCTTC+TGG | + | chr6_2:62230743-62230762 | Msa0922760:intron | 30.0% | |
| ! | ATTGTTTGAATCTTCTGGTT+CGG | + | chr6_2:62230748-62230767 | Msa0922760:intron | 30.0% |
| !!! | TGGTTCGGTTTTTAAAACAT+TGG | + | chr6_2:62230763-62230782 | Msa0922760:intron | 30.0% |
| !!! | TGGTTCGGATTTTAAAACAT+TGG | + | chr6_2:62230812-62230831 | Msa0922760:intron | 30.0% |
| TACATGAAAACTATCAACTG+AGG | - | chr6_2:62231010-62231029 | None:intergenic | 30.0% | |
| ! | CTGAAGTATCACTGAATATT+TGG | + | chr6_2:62231056-62231075 | Msa0922760:intron | 30.0% |
| GTTAGTATGTGAGATTTGAA+CGG | + | chr6_2:62231103-62231122 | Msa0922760:intron | 30.0% | |
| TTAGTATGTGAGATTTGAAC+GGG | + | chr6_2:62231104-62231123 | Msa0922760:intron | 30.0% | |
| AAAAGAGGAAAAAAAGTCTC+CGG | - | chr6_2:62231216-62231235 | None:intergenic | 30.0% | |
| ! | TCCTCTTTTCATAGTAAAAG+AGG | + | chr6_2:62231227-62231246 | Msa0922760:intron | 30.0% |
| ! | CCTCTTTTCATAGTAAAAGA+GGG | + | chr6_2:62231228-62231247 | Msa0922760:intron | 30.0% |
| AAAGATAAAGACAAGGGATT+GGG | - | chr6_2:62231338-62231357 | None:intergenic | 30.0% | |
| AAAAGATAAAGACAAGGGAT+TGG | - | chr6_2:62231339-62231358 | None:intergenic | 30.0% | |
| ! | AATCCCTTGTCTTTATCTTT+TGG | + | chr6_2:62231338-62231357 | Msa0922760:intron | 30.0% |
| GAAACCAAAAGATAAAGACA+AGG | - | chr6_2:62231345-62231364 | None:intergenic | 30.0% | |
| !!! | CATTAGCTACTTTTGAATGT+AGG | + | chr6_2:62231396-62231415 | Msa0922760:intron | 30.0% |
| ! | CTTTGTTTAGTGATGGTATA+CGG | - | chr6_2:62231881-62231900 | None:intergenic | 30.0% |
| GTATACCATCACTAAACAAA+GGG | + | chr6_2:62231880-62231899 | Msa0922760:CDS | 30.0% | |
| AATCTTCATGCAGAACATAT+AGG | + | chr6_2:62232064-62232083 | Msa0922760:intron | 30.0% | |
| ATCTTCATGCAGAACATATA+GGG | + | chr6_2:62232065-62232084 | Msa0922760:intron | 30.0% | |
| ! | TAGAGAAAAACTTTTGAGCA+TGG | - | chr6_2:62232117-62232136 | None:intergenic | 30.0% |
| ! | TGCTCAAAAGTTTTTCTCTA+AGG | + | chr6_2:62232117-62232136 | Msa0922760:CDS | 30.0% |
| AGTAGAGATATTAAGATGCA+TGG | - | chr6_2:62232295-62232314 | None:intergenic | 30.0% | |
| TGCATCTTAATATCTCTACT+TGG | + | chr6_2:62232295-62232314 | Msa0922760:intron | 30.0% | |
| ! | AAATCAGTTGACTCTTTCAA+AGG | + | chr6_2:62232423-62232442 | Msa0922760:CDS | 30.0% |
| ! | GAGATGTTTCTGATTCATTT+GGG | - | chr6_2:62232458-62232477 | None:intergenic | 30.0% |
| AAGAATTTGGAGAAAGACAT+CGG | - | chr6_2:62232590-62232609 | None:intergenic | 30.0% | |
| !! | CGACTCATGTTTAAGATTTT+AGG | + | chr6_2:62232799-62232818 | Msa0922760:intron | 30.0% |
| !!! | TTAAGATTTTAGGACCTGTA+TGG | + | chr6_2:62232809-62232828 | Msa0922760:intron | 30.0% |
| TCAAATATGCTAATCCATAC+AGG | - | chr6_2:62232826-62232845 | None:intergenic | 30.0% | |
| AGCTTAATACTAGTGATTTG+TGG | - | chr6_2:62233187-62233206 | None:intergenic | 30.0% | |
| ATCACTAGTATTAAGCTGTT+TGG | + | chr6_2:62233190-62233209 | Msa0922760:CDS | 30.0% | |
| AGCTATCAACTCTAATGAAA+TGG | + | chr6_2:62233276-62233295 | Msa0922760:CDS | 30.0% | |
| CTTGATACAGAATTATCACT+AGG | + | chr6_2:62233340-62233359 | Msa0922760:CDS | 30.0% | |
| !! | CTTGCTATTATCTTCAAACA+AGG | - | chr6_2:62233532-62233551 | None:intergenic | 30.0% |
| ! | AAATTCTTTAATTGCTGGCT+TGG | + | chr6_2:62233738-62233757 | Msa0922760:CDS | 30.0% |
| TAAATCAGTTCCTTATTCTC+AGG | - | chr6_2:62233854-62233873 | None:intergenic | 30.0% | |
| GAAAACAACAAAAGATTTGC+TGG | - | chr6_2:62234033-62234052 | None:intergenic | 30.0% | |
| TCCATAGTCACAAACACAAA+TGG | + | chr6_2:62228933-62228952 | Msa0922760:intron | 35.0% | |
| TCCATTTGTGTTTGTGACTA+TGG | - | chr6_2:62228937-62228956 | None:intergenic | 35.0% | |
| ! | CTGAAAATGGTCTAAGACAA+AGG | - | chr6_2:62229447-62229466 | None:intergenic | 35.0% |
| ! | GAGAAAACATTTGAGGTTTG+TGG | - | chr6_2:62229470-62229489 | None:intergenic | 35.0% |
| AAGAAGGTTGGAGTAAAGAA+GGG | - | chr6_2:62229650-62229669 | None:intergenic | 35.0% | |
| ATTTGGAGAGAAAGAGAGAA+TGG | - | chr6_2:62229681-62229700 | None:intergenic | 35.0% | |
| AGTGACCCAGATGAATAATT+TGG | - | chr6_2:62229698-62229717 | None:intergenic | 35.0% | |
| TTGACTCAGCTGAAATTACA+AGG | + | chr6_2:62229793-62229812 | Msa0922760:intron | 35.0% | |
| !!! | TTCTTTTGGTGTTGCTTGAT+TGG | + | chr6_2:62230021-62230040 | Msa0922760:intron | 35.0% |
| ! | ATTTGCTACAATGGAGACTA+AGG | + | chr6_2:62230084-62230103 | Msa0922760:CDS | 35.0% |
| !! | GAATAACGGATAACTGATGT+CGG | + | chr6_2:62230311-62230330 | Msa0922760:intron | 35.0% |
| !!! | GTAGAGTATTTTGGTTCCAT+AGG | + | chr6_2:62230522-62230541 | Msa0922760:intron | 35.0% |
| AGATGATTTCATGTCTGGTT+CGG | - | chr6_2:62230690-62230709 | None:intergenic | 35.0% | |
| AGTCTAGATGATTTCATGTC+TGG | - | chr6_2:62230695-62230714 | None:intergenic | 35.0% | |
| GTTGAAATTGTTGCATCATC+TGG | + | chr6_2:62230792-62230811 | Msa0922760:intron | 35.0% | |
| AATTGTTGCATCATCTGGTT+CGG | + | chr6_2:62230797-62230816 | Msa0922760:intron | 35.0% | |
| ! | GCAAAGTGCTTACCTAAATA+AGG | + | chr6_2:62230873-62230892 | Msa0922760:intron | 35.0% |
| ! | CCCTCTTTTACTATGAAAAG+AGG | - | chr6_2:62231231-62231250 | None:intergenic | 35.0% |
| TGAATGTAGGATCAAGTTCA+AGG | + | chr6_2:62231409-62231428 | Msa0922760:intron | 35.0% | |
| GTGGAAAGTAAAACAACCTT+GGG | - | chr6_2:62231541-62231560 | None:intergenic | 35.0% | |
| TGTGGAAAGTAAAACAACCT+TGG | - | chr6_2:62231542-62231561 | None:intergenic | 35.0% | |
| TTGTTATACAGTCGCTATAG+CGG | + | chr6_2:62231587-62231606 | Msa0922760:intron | 35.0% | |
| CAAATTCCACTATGCTATAG+CGG | - | chr6_2:62231640-62231659 | None:intergenic | 35.0% | |
| ACTACATCACTGTTGCATAA+CGG | + | chr6_2:62231724-62231743 | Msa0922760:intron | 35.0% | |
| TAGTAGATCGCAGAAAATAG+CGG | - | chr6_2:62231762-62231781 | None:intergenic | 35.0% | |
| CAAAACAGTAGTTCTTCGAT+TGG | - | chr6_2:62231805-62231824 | None:intergenic | 35.0% | |
| CGTATACCATCACTAAACAA+AGG | + | chr6_2:62231879-62231898 | Msa0922760:CDS | 35.0% | |
| ! | TTTCTCCCTTTGTTTAGTGA+TGG | - | chr6_2:62231888-62231907 | None:intergenic | 35.0% |
| TCACTAAACAAAGGGAGAAA+TGG | + | chr6_2:62231888-62231907 | Msa0922760:CDS | 35.0% | |
| ! | GAACTTTTGATGCTCTTCAT+CGG | - | chr6_2:62231915-62231934 | None:intergenic | 35.0% |
| CATAAAGTTTCAAAGCCTCA+AGG | - | chr6_2:62231937-62231956 | None:intergenic | 35.0% | |
| !! | CTTGAGGCTTTGAAACTTTA+TGG | + | chr6_2:62231935-62231954 | Msa0922760:CDS | 35.0% |
| TGTTCTGCATGAAGATTAAG+AGG | - | chr6_2:62232061-62232080 | None:intergenic | 35.0% | |
| GGACTATAAAGGAAAGGATT+TGG | + | chr6_2:62232215-62232234 | Msa0922760:intron | 35.0% | |
| AGATGCATGGAATGTTGAAA+TGG | - | chr6_2:62232282-62232301 | None:intergenic | 35.0% | |
| TAATATCTCTACTTGGTTGC+AGG | + | chr6_2:62232302-62232321 | Msa0922760:intron | 35.0% | |
| AATTGGCTGAATAGGACTTT+CGG | - | chr6_2:62232352-62232371 | None:intergenic | 35.0% | |
| ! | GGAGATGTTTCTGATTCATT+TGG | - | chr6_2:62232459-62232478 | None:intergenic | 35.0% |
| TCAAGCAGTTTATCATACCA+TGG | - | chr6_2:62232751-62232770 | None:intergenic | 35.0% | |
| TTCCTCAGAAGAAATAACCT+CGG | - | chr6_2:62233131-62233150 | None:intergenic | 35.0% | |
| CATATTTGCAGCATCTTCTT+TGG | - | chr6_2:62233164-62233183 | None:intergenic | 35.0% | |
| TTTGGTCGAACACTATCTAT+GGG | + | chr6_2:62233208-62233227 | Msa0922760:CDS | 35.0% | |
| TGAAATGGATGATCTTGAGA+AGG | + | chr6_2:62233291-62233310 | Msa0922760:CDS | 35.0% | |
| GAAGATAATAGCAAGAGAAG+AGG | + | chr6_2:62233537-62233556 | Msa0922760:CDS | 35.0% | |
| TCAAACTCAAAAACATCGTC+AGG | + | chr6_2:62233645-62233664 | Msa0922760:CDS | 35.0% | |
| TCCTTAAGAAATCTGGAAGA+GGG | + | chr6_2:62233677-62233696 | Msa0922760:CDS | 35.0% | |
| TCAAGAACTTCCTGAGAATA+AGG | + | chr6_2:62233841-62233860 | Msa0922760:three_prime_UTR | 35.0% | |
| !! | GTGTTTTTAACGCCCATTTT+TGG | + | chr6_2:62234054-62234073 | Msa0922760:three_prime_UTR | 35.0% |
| GACATACATGTGCCAAAAAT+GGG | - | chr6_2:62234069-62234088 | None:intergenic | 35.0% | |
| AGACATACATGTGCCAAAAA+TGG | - | chr6_2:62234070-62234089 | None:intergenic | 35.0% | |
| CGTGATTGAATCAATGATTG+AGG | + | chr6_2:62234099-62234118 | Msa0922760:three_prime_UTR | 35.0% | |
| TTGAGGTTTGTGGCTGAAAA+TGG | - | chr6_2:62229460-62229479 | None:intergenic | 40.0% | |
| AGGGTTCGAGAAAACATTTG+AGG | - | chr6_2:62229477-62229496 | None:intergenic | 40.0% | |
| GAAGAAGGTTGGAGTAAAGA+AGG | - | chr6_2:62229651-62229670 | None:intergenic | 40.0% | |
| AGAAAGAGAGAATGGAGCAA+TGG | - | chr6_2:62229673-62229692 | None:intergenic | 40.0% | |
| !!! | TTTTGGTGTTGCTTGATTGG+TGG | + | chr6_2:62230024-62230043 | Msa0922760:intron | 40.0% |
| ! | CTGATATTGTTAGGGTGTTC+TGG | + | chr6_2:62230050-62230069 | Msa0922760:CDS | 40.0% |
| ! | ATTGTTAGGGTGTTCTGGAT+TGG | + | chr6_2:62230055-62230074 | Msa0922760:CDS | 40.0% |
| !! | TGGCTCTGAATTTGCTACAA+TGG | + | chr6_2:62230075-62230094 | Msa0922760:CDS | 40.0% |
| TCTATATGAGACTAGGGAGT+AGG | + | chr6_2:62230367-62230386 | Msa0922760:intron | 40.0% | |
| CTATATGAGACTAGGGAGTA+GGG | + | chr6_2:62230368-62230387 | Msa0922760:intron | 40.0% | |
| TATATGAGACTAGGGAGTAG+GGG | + | chr6_2:62230369-62230388 | Msa0922760:intron | 40.0% | |
| ! | ATCATCTAGACTTTGGCTCA+TGG | + | chr6_2:62230703-62230722 | Msa0922760:intron | 40.0% |
| ! | CATGGTTCAACTGCTTTGAA+AGG | + | chr6_2:62230721-62230740 | Msa0922760:intron | 40.0% |
| TATGTGAGATTTGAACGGGA+CGG | + | chr6_2:62231108-62231127 | Msa0922760:intron | 40.0% | |
| CTATTTAACATGCTGCTGCT+TGG | + | chr6_2:62231146-62231165 | Msa0922760:intron | 40.0% | |
| GTGGAGGATTGAATGTAAGA+TGG | - | chr6_2:62231189-62231208 | None:intergenic | 40.0% | |
| AAAAAAAGTCTCCGGAAGAG+TGG | - | chr6_2:62231208-62231227 | None:intergenic | 40.0% | |
| GTTCAAGGCACAAAGTTAAC+TGG | + | chr6_2:62231424-62231443 | Msa0922760:CDS | 40.0% | |
| TGAAAATGATGCTAAGTCGC+AGG | + | chr6_2:62231486-62231505 | Msa0922760:CDS | 40.0% | |
| AAATAGCCGCTATAGCATAG+TGG | + | chr6_2:62231631-62231650 | Msa0922760:intron | 40.0% | |
| TTGTGAAATAGCGGCTGTAA+CGG | + | chr6_2:62231700-62231719 | Msa0922760:intron | 40.0% | |
| ! | AGAGCATCAAAAGTTCCTTG+AGG | + | chr6_2:62231919-62231938 | Msa0922760:CDS | 40.0% |
| !! | GCTTTGAAACTTTATGGTCG+TGG | + | chr6_2:62231941-62231960 | Msa0922760:CDS | 40.0% |
| ! | TCGAATCTGAACTGCAGTTT+TGG | - | chr6_2:62232092-62232111 | None:intergenic | 40.0% |
| GGTATGTCAATTGGCTGAAT+AGG | - | chr6_2:62232360-62232379 | None:intergenic | 40.0% | |
| !! | AAGAGTCAACTGATTTGCGA+GGG | - | chr6_2:62232419-62232438 | None:intergenic | 40.0% |
| !! | AAAGAGTCAACTGATTTGCG+AGG | - | chr6_2:62232420-62232439 | None:intergenic | 40.0% |
| TGACTCTTTCAAAGGACAGT+TGG | + | chr6_2:62232431-62232450 | Msa0922760:CDS | 40.0% | |
| TTCTGCAATGGACAGGTTAA+TGG | - | chr6_2:62232484-62232503 | None:intergenic | 40.0% | |
| TGTACTATCTGCACTTGGTT+CGG | + | chr6_2:62232527-62232546 | Msa0922760:CDS | 40.0% | |
| !!! | GGTTTTGAGTTGGTGGATAA+AGG | - | chr6_2:62232720-62232739 | None:intergenic | 40.0% |
| !!! | CATAAGTGGTTTTGAGTTGG+TGG | - | chr6_2:62232727-62232746 | None:intergenic | 40.0% |
| CACCAACTCAAAACCACTTA+TGG | + | chr6_2:62232725-62232744 | Msa0922760:CDS | 40.0% | |
| TATCATACCATGGCCATAAG+TGG | - | chr6_2:62232741-62232760 | None:intergenic | 40.0% | |
| TAGCTATTCTGCAGAGCTTA+TGG | - | chr6_2:62232942-62232961 | None:intergenic | 40.0% | |
| GTTTGGTCGAACACTATCTA+TGG | + | chr6_2:62233207-62233226 | Msa0922760:CDS | 40.0% | |
| ATGGATGATCTTGAGAAGGT+TGG | + | chr6_2:62233295-62233314 | Msa0922760:CDS | 40.0% | |
| TGGATGATCTTGAGAAGGTT+GGG | + | chr6_2:62233296-62233315 | Msa0922760:CDS | 40.0% | |
| CTGACATATGCATTCTCCTT+CGG | - | chr6_2:62233409-62233428 | None:intergenic | 40.0% | |
| CCTTGGTACAAACTCCATAA+CGG | - | chr6_2:62233448-62233467 | None:intergenic | 40.0% | |
| TTCTTAATCCTGTGCCTCTT+AGG | + | chr6_2:62233506-62233525 | Msa0922760:CDS | 40.0% | |
| ATCTTCAAACAAGGCCTAAG+AGG | - | chr6_2:62233523-62233542 | None:intergenic | 40.0% | |
| ACTCAAAAACATCGTCAGGA+AGG | + | chr6_2:62233649-62233668 | Msa0922760:CDS | 40.0% | |
| GGAGTTGTCCTTAAGAAATC+TGG | + | chr6_2:62233670-62233689 | Msa0922760:CDS | 40.0% | |
| GTCCTTAAGAAATCTGGAAG+AGG | + | chr6_2:62233676-62233695 | Msa0922760:CDS | 40.0% | |
| ACCCTCTTCCAGATTTCTTA+AGG | - | chr6_2:62233681-62233700 | None:intergenic | 40.0% | |
| !! | TAATTGCTGGCTTGGAAGAA+AGG | + | chr6_2:62233746-62233765 | Msa0922760:CDS | 40.0% |
| !! | AATTGCTGGCTTGGAAGAAA+GGG | + | chr6_2:62233747-62233766 | Msa0922760:CDS | 40.0% |
| TCAATGATTGAGGTGCAAGA+AGG | + | chr6_2:62234109-62234128 | Msa0922760:three_prime_UTR | 40.0% | |
| TCTCACTCGCTGTTCTACTT+AGG | - | chr6_2:62229213-62229232 | None:intergenic | 45.0% | |
| TAATCTGACGTGTCAGTCTG+TGG | + | chr6_2:62229543-62229562 | Msa0922760:intron | 45.0% | |
| ATGGAGCAATGGAAGAAGGT+TGG | - | chr6_2:62229662-62229681 | None:intergenic | 45.0% | |
| GAGAATGGAGCAATGGAAGA+AGG | - | chr6_2:62229666-62229685 | None:intergenic | 45.0% | |
| TGGTGGCAGCTGATATTGTT+AGG | + | chr6_2:62230041-62230060 | Msa0922760:intron | 45.0% | |
| GGTGGCAGCTGATATTGTTA+GGG | + | chr6_2:62230042-62230061 | Msa0922760:intron | 45.0% | |
| ATATGAGACTAGGGAGTAGG+GGG | + | chr6_2:62230370-62230389 | Msa0922760:intron | 45.0% | |
| ! | GAGTAGGGGGAGTTTCTTTT+TGG | + | chr6_2:62230383-62230402 | Msa0922760:intron | 45.0% |
| ! | ATTCTAGGGGACAACGAACA+AGG | - | chr6_2:62230935-62230954 | None:intergenic | 45.0% |
| TTCGTTGTCCCCTAGAATGT+TGG | + | chr6_2:62230937-62230956 | Msa0922760:intron | 45.0% | |
| AACCTCGCTCCAACATTCTA+GGG | - | chr6_2:62230949-62230968 | None:intergenic | 45.0% | |
| TAACCTCGCTCCAACATTCT+AGG | - | chr6_2:62230950-62230969 | None:intergenic | 45.0% | |
| CATTCAATCCTCCACTCTTC+CGG | + | chr6_2:62231194-62231213 | Msa0922760:intron | 45.0% | |
| ! | GCTAGTAAGTGCCATTCCAA+AGG | + | chr6_2:62231451-62231470 | Msa0922760:CDS | 45.0% |
| ! | AGTAAGTGCCATTCCAAAGG+TGG | + | chr6_2:62231454-62231473 | Msa0922760:CDS | 45.0% |
| ! | ACTGTGATCCACCTTTGGAA+TGG | - | chr6_2:62231465-62231484 | None:intergenic | 45.0% |
| TTCAGACTGTGATCCACCTT+TGG | - | chr6_2:62231470-62231489 | None:intergenic | 45.0% | |
| TCGCAGGATATACCTTCTGT+CGG | + | chr6_2:62231502-62231521 | Msa0922760:CDS | 45.0% | |
| GTAAAACAACCTTGGGAGCA+AGG | - | chr6_2:62231534-62231553 | None:intergenic | 45.0% | |
| TGAAACTTTATGGTCGTGGC+TGG | + | chr6_2:62231945-62231964 | Msa0922760:CDS | 45.0% | |
| CAATTGACATACCTCCTCCT+CGG | + | chr6_2:62232367-62232386 | Msa0922760:CDS | 45.0% | |
| ! | TTTGCGAGGGTATGGATGAA+GGG | - | chr6_2:62232406-62232425 | None:intergenic | 45.0% |
| ! | ATTTGCGAGGGTATGGATGA+AGG | - | chr6_2:62232407-62232426 | None:intergenic | 45.0% |
| !! | TCAACTGATTTGCGAGGGTA+TGG | - | chr6_2:62232414-62232433 | None:intergenic | 45.0% |
| GCAATGGACAGGTTAATGGA+TGG | - | chr6_2:62232480-62232499 | None:intergenic | 45.0% | |
| !!! | TGTCGTTTTCTGCAATGGAC+AGG | - | chr6_2:62232491-62232510 | None:intergenic | 45.0% |
| !!! | TTGGGTGTCGTTTTCTGCAA+TGG | - | chr6_2:62232496-62232515 | None:intergenic | 45.0% |
| TAGTACAGAGGTTGGCGATT+GGG | - | chr6_2:62232514-62232533 | None:intergenic | 45.0% | |
| ATAGTACAGAGGTTGGCGAT+TGG | - | chr6_2:62232515-62232534 | None:intergenic | 45.0% | |
| AGTGCAGATAGTACAGAGGT+TGG | - | chr6_2:62232522-62232541 | None:intergenic | 45.0% | |
| ACCTCTGTACTATCTGCACT+TGG | + | chr6_2:62232522-62232541 | Msa0922760:CDS | 45.0% | |
| ACCAAGTGCAGATAGTACAG+AGG | - | chr6_2:62232526-62232545 | None:intergenic | 45.0% | |
| ATCTCGGTGGTGCAAGAATT+TGG | - | chr6_2:62232603-62232622 | None:intergenic | 45.0% | |
| !!! | GGCCATAAGTGGTTTTGAGT+TGG | - | chr6_2:62232730-62232749 | None:intergenic | 45.0% |
| CTCAAAACCACTTATGGCCA+TGG | + | chr6_2:62232731-62232750 | Msa0922760:CDS | 45.0% | |
| !!! | CACTGTTTTGGCAGAGCTTA+CGG | + | chr6_2:62232874-62232893 | Msa0922760:intron | 45.0% |
| !! | GTCCGAGGTTATTTCTTCTG+AGG | + | chr6_2:62233126-62233145 | Msa0922760:CDS | 45.0% |
| GGGTTCTCAGAAGTCAATGA+AGG | + | chr6_2:62233228-62233247 | Msa0922760:CDS | 45.0% | |
| TGAGAAGGTTGGGCAAAAAG+AGG | + | chr6_2:62233306-62233325 | Msa0922760:CDS | 45.0% | |
| ACTGCGCAACTTTACCGTTA+TGG | + | chr6_2:62233431-62233450 | Msa0922760:CDS | 45.0% | |
| CCGTTATGGAGTTTGTACCA+AGG | + | chr6_2:62233445-62233464 | Msa0922760:CDS | 45.0% | |
| GATGATTGCATGGCATGATG+TGG | - | chr6_2:62233483-62233502 | None:intergenic | 45.0% | |
| ! | ATCGCAGACTGATTCAGTGT+TGG | - | chr6_2:62233581-62233600 | None:intergenic | 45.0% |
| CACTGAATCAGTCTGCGATA+TGG | + | chr6_2:62233582-62233601 | Msa0922760:CDS | 45.0% | |
| TGAGGTGCAAGAAGGAAACA+TGG | + | chr6_2:62234117-62234136 | Msa0922760:three_prime_UTR | 45.0% | |
| !! | GAAAATAAATAAAATTAAAT+TGG | - | chr6_2:62229385-62229404 | None:intergenic | 5.0% |
| !! | TAAAATTTATTTACTAAATT+TGG | + | chr6_2:62231982-62232001 | Msa0922760:intron | 5.0% |
| ACCTCGCTCCAACATTCTAG+GGG | - | chr6_2:62230948-62230967 | None:intergenic | 50.0% | |
| ACGGGACGGCAATTAAGCTT+AGG | + | chr6_2:62231122-62231141 | Msa0922760:intron | 50.0% | |
| AAAAGTCTCCGGAAGAGTGG+AGG | - | chr6_2:62231205-62231224 | None:intergenic | 50.0% | |
| ! | GCAAGGTTGTTTCCGACAGA+AGG | - | chr6_2:62231517-62231536 | None:intergenic | 50.0% |
| CTACTTGGTTGCAGGTTGTG+CGG | + | chr6_2:62232310-62232329 | Msa0922760:intron | 50.0% | |
| TACTTGGTTGCAGGTTGTGC+GGG | + | chr6_2:62232311-62232330 | Msa0922760:intron | 50.0% | |
| ! | CGAGGAGGAGGTATGTCAAT+TGG | - | chr6_2:62232369-62232388 | None:intergenic | 50.0% |
| GGATGAAGGGGTTTCCTCTT+CGG | - | chr6_2:62232393-62232412 | None:intergenic | 50.0% | |
| ! | TTGCGAGGGTATGGATGAAG+GGG | - | chr6_2:62232405-62232424 | None:intergenic | 50.0% |
| TCAACAGGTGACAAGCTGAC+CGG | - | chr6_2:62232630-62232649 | None:intergenic | 50.0% | |
| ! | CCTCAGATGGTTTGGATGTC+TGG | - | chr6_2:62232668-62232687 | None:intergenic | 50.0% |
| CCAGACATCCAAACCATCTG+AGG | + | chr6_2:62232665-62232684 | Msa0922760:CDS | 50.0% | |
| GACATCCAAACCATCTGAGG+AGG | + | chr6_2:62232668-62232687 | Msa0922760:CDS | 50.0% | |
| CTCTTCCTCCTCAGATGGTT+TGG | - | chr6_2:62232676-62232695 | None:intergenic | 50.0% | |
| CCTTTCTCTTCCTCCTCAGA+TGG | - | chr6_2:62232681-62232700 | None:intergenic | 50.0% | |
| CCATCTGAGGAGGAAGAGAA+AGG | + | chr6_2:62232678-62232697 | Msa0922760:CDS | 50.0% | |
| TGTGTTATGGCAGAAGTCCG+AGG | + | chr6_2:62233111-62233130 | Msa0922760:intron | 50.0% | |
| GAGTTTGTACCAAGGCCTTC+CGG | + | chr6_2:62233453-62233472 | Msa0922760:CDS | 50.0% | |
| CATGGCATGATGTGGAAAGC+CGG | - | chr6_2:62233475-62233494 | None:intergenic | 50.0% | |
| ! | AAACAAGGCCTAAGAGGCAC+AGG | - | chr6_2:62233517-62233536 | None:intergenic | 50.0% |
| GAAGAGGAAAGCTCTTGCAC+TGG | + | chr6_2:62233553-62233572 | Msa0922760:CDS | 50.0% | |
| TCCCCTAGAATGTTGGAGCG+AGG | + | chr6_2:62230944-62230963 | Msa0922760:intron | 55.0% | |
| ! | GCTGCTGCTTGGTATGAAGC+AGG | + | chr6_2:62231157-62231176 | Msa0922760:intron | 55.0% |
| CGGAAACAACCTTGCTCCCA+AGG | + | chr6_2:62231522-62231541 | Msa0922760:CDS | 55.0% | |
| CGTGGCTGGCGTCAAATTGA+AGG | + | chr6_2:62231959-62231978 | Msa0922760:CDS | 55.0% | |
| !! | GCACTTGGTTCGGAAGCGTT+CGG | + | chr6_2:62232537-62232556 | Msa0922760:CDS | 55.0% |
| TTGCACCACCGAGATTCACC+CGG | + | chr6_2:62232608-62232627 | Msa0922760:CDS | 55.0% | |
| CAAGCTGACCGGGTGAATCT+CGG | - | chr6_2:62232619-62232638 | None:intergenic | 55.0% | |
| CAACAGGTGACAAGCTGACC+GGG | - | chr6_2:62232629-62232648 | None:intergenic | 55.0% | |
| CTAGGCATGTGCACACCTGA+TGG | + | chr6_2:62233358-62233377 | Msa0922760:CDS | 55.0% | |
| CTGCTCACTTGAGCTCCATC+AGG | - | chr6_2:62233376-62233395 | None:intergenic | 55.0% | |
| TGGAGCTCAAGTGAGCAGCA+TGG | + | chr6_2:62233378-62233397 | Msa0922760:CDS | 55.0% | |
| GAGCAGCATGGAACAACCGA+AGG | + | chr6_2:62233390-62233409 | Msa0922760:CDS | 55.0% | |
| GCATGATGTGGAAAGCCGGA+AGG | - | chr6_2:62233471-62233490 | None:intergenic | 55.0% | |
| !! | GCTGGCTTGGAAGAAAGGGA+AGG | + | chr6_2:62233751-62233770 | Msa0922760:CDS | 55.0% |
| CAGGTTGTGCGGGAACCTGA+TGG | + | chr6_2:62232321-62232340 | Msa0922760:intron | 60.0% | |
| GGACTTTCGGCACTGCCATC+AGG | - | chr6_2:62232339-62232358 | None:intergenic | 60.0% | |
| TGTGGAAAGCCGGAAGGCCT+TGG | - | chr6_2:62233465-62233484 | None:intergenic | 60.0% | |
| TACCTCCTCCTCGGCCGAAG+AGG | + | chr6_2:62232376-62232395 | Msa0922760:CDS | 65.0% | |
| TTCCTCTTCGGCCGAGGAGG+AGG | - | chr6_2:62232381-62232400 | None:intergenic | 65.0% | |
| GGTTTCCTCTTCGGCCGAGG+AGG | - | chr6_2:62232384-62232403 | None:intergenic | 65.0% | |
| AGGGGTTTCCTCTTCGGCCG+AGG | - | chr6_2:62232387-62232406 | None:intergenic | 65.0% | |
| GCTGACCGGGTGAATCTCGG+TGG | - | chr6_2:62232616-62232635 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 62228710 | 62234207 | 62228710 | ID=Msa0922760;Name=Msa0922760 |
| chr6_2 | mRNA | 62228710 | 62234207 | 62228710 | ID=Msa0922760-mRNA-1;Parent=Msa0922760;Name=Msa0922760-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.83|0.85|0.85|1|1|7|409|499 |
| chr6_2 | exon | 62228710 | 62228749 | 62228710 | ID=Msa0922760-mRNA-1:exon:9615;Parent=Msa0922760-mRNA-1 |
| chr6_2 | exon | 62230050 | 62230105 | 62230050 | ID=Msa0922760-mRNA-1:exon:9616;Parent=Msa0922760-mRNA-1 |
| chr6_2 | exon | 62231418 | 62231543 | 62231418 | ID=Msa0922760-mRNA-1:exon:9617;Parent=Msa0922760-mRNA-1 |
| chr6_2 | exon | 62231869 | 62231980 | 62231869 | ID=Msa0922760-mRNA-1:exon:9618;Parent=Msa0922760-mRNA-1 |
| chr6_2 | exon | 62232077 | 62232138 | 62232077 | ID=Msa0922760-mRNA-1:exon:9619;Parent=Msa0922760-mRNA-1 |
| chr6_2 | exon | 62232324 | 62232752 | 62232324 | ID=Msa0922760-mRNA-1:exon:9620;Parent=Msa0922760-mRNA-1 |
| chr6_2 | exon | 62233124 | 62234207 | 62233124 | ID=Msa0922760-mRNA-1:exon:9621;Parent=Msa0922760-mRNA-1 |
| chr6_2 | CDS | 62228710 | 62228749 | 62228710 | ID=Msa0922760-mRNA-1:cds;Parent=Msa0922760-mRNA-1 |
| chr6_2 | CDS | 62230050 | 62230105 | 62230050 | ID=Msa0922760-mRNA-1:cds;Parent=Msa0922760-mRNA-1 |
| chr6_2 | CDS | 62231418 | 62231543 | 62231418 | ID=Msa0922760-mRNA-1:cds;Parent=Msa0922760-mRNA-1 |
| chr6_2 | CDS | 62231869 | 62231980 | 62231869 | ID=Msa0922760-mRNA-1:cds;Parent=Msa0922760-mRNA-1 |
| chr6_2 | CDS | 62232077 | 62232138 | 62232077 | ID=Msa0922760-mRNA-1:cds;Parent=Msa0922760-mRNA-1 |
| chr6_2 | CDS | 62232324 | 62232752 | 62232324 | ID=Msa0922760-mRNA-1:cds;Parent=Msa0922760-mRNA-1 |
| chr6_2 | CDS | 62233124 | 62233798 | 62233124 | ID=Msa0922760-mRNA-1:cds;Parent=Msa0922760-mRNA-1 |
| chr6_2 | three_prime_UTR | 62233799 | 62234207 | 62233799 | ID=Msa0922760-mRNA-1:three_prime_utr;Parent=Msa0922760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
