AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0922790

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0922790 MtrunA17_Chr6g0481091 88.060 268 3 1 1 268 1 239 1.46e-175 483
Msa0922790 MtrunA17_Chr3g0109821 64.398 191 38 2 1 190 1 162 1.60e-84 266
Msa0922790 MtrunA17_Chr5g0433781 63.492 189 40 1 1 189 1 160 1.79e-80 254
Msa0922790 MtrunA17_Chr2g0309891 60.428 187 44 2 1 186 1 158 8.06e-77 236
Msa0922790 MtrunA17_Chr5g0400461 50.000 236 78 4 1 228 1 204 3.14e-69 217
Msa0922790 MtrunA17_Chr4g0054791 53.968 189 55 2 1 186 1 160 2.12e-63 201
Msa0922790 MtrunA17_Chr4g0017921 48.370 184 64 3 5 188 7 159 1.41e-55 182
Msa0922790 MtrunA17_Chr1g0200561 48.333 180 63 3 6 185 19 168 3.69e-55 181
Msa0922790 MtrunA17_Chr3g0130101 41.880 234 98 3 8 234 9 211 6.60e-55 181
Msa0922790 MtrunA17_Chr1g0201021 50.000 190 66 1 8 197 21 181 7.07e-55 186
Msa0922790 MtrunA17_Chr2g0309331 48.913 184 61 5 4 185 8 160 1.44e-54 179
Msa0922790 MtrunA17_Chr4g0018391 47.778 180 64 3 6 185 7 156 2.57e-54 179
Msa0922790 MtrunA17_Chr4g0056541 45.556 180 68 3 6 185 7 156 3.13e-54 179
Msa0922790 MtrunA17_Chr5g0417791 42.857 217 88 3 6 218 3 187 3.89e-54 176
Msa0922790 MtrunA17_Chr3g0128151 42.570 249 109 3 1 247 17 233 4.49e-54 184
Msa0922790 MtrunA17_Chr3g0128111 41.176 238 103 3 9 246 45 245 4.44e-53 172
Msa0922790 MtrunA17_Chr5g0428991 41.221 262 111 4 6 267 25 243 5.74e-53 181
Msa0922790 MtrunA17_Chr5g0405211 46.667 180 66 3 6 185 8 157 6.90e-53 175
Msa0922790 MtrunA17_Chr8g0346001 41.584 202 81 3 6 198 15 188 9.97e-53 177
Msa0922790 MtrunA17_Chr4g0042561 39.912 228 98 6 6 229 9 201 1.89e-52 172
Msa0922790 MtrunA17_Chr8g0372121 41.546 207 91 3 6 212 6 182 2.28e-52 172
Msa0922790 MtrunA17_Chr5g0398971 46.961 181 66 4 6 185 7 158 4.25e-52 173
Msa0922790 MtrunA17_Chr6g0484441 41.485 229 95 5 5 229 4 197 1.05e-51 171
Msa0922790 MtrunA17_Chr8g0359921 45.213 188 70 2 1 186 9 165 1.17e-51 171
Msa0922790 MtrunA17_Chr2g0318081 43.548 186 74 1 1 186 11 165 1.43e-51 172
Msa0922790 MtrunA17_Chr3g0130731 47.027 185 63 4 6 187 7 159 1.44e-51 170
Msa0922790 MtrunA17_Chr8g0364791 46.154 182 69 1 6 187 6 158 1.87e-51 174
Msa0922790 MtrunA17_Chr3g0124761 41.333 225 89 5 2 223 3 187 1.30e-50 167
Msa0922790 MtrunA17_Chr1g0197351 49.215 191 62 2 4 188 40 201 1.41e-50 172
Msa0922790 MtrunA17_Chr7g0252971 39.367 221 79 5 4 211 6 184 8.02e-50 167
Msa0922790 MtrunA17_Chr1g0197361 48.066 181 63 3 8 187 10 160 1.36e-49 172
Msa0922790 MtrunA17_Chr2g0318101 42.105 209 77 3 6 201 15 192 2.09e-49 166
Msa0922790 MtrunA17_Chr2g0316971 48.387 186 61 5 6 187 23 177 4.19e-49 166
Msa0922790 MtrunA17_Chr3g0139331 46.196 184 64 3 6 187 11 161 5.77e-49 165
Msa0922790 MtrunA17_Chr8g0384201 44.505 182 72 1 6 187 6 158 7.86e-49 168
Msa0922790 MtrunA17_Chr1g0147421 46.486 185 63 4 6 187 27 178 1.46e-48 164
Msa0922790 MtrunA17_Chr3g0092671 48.066 181 63 3 8 187 7 157 1.71e-48 168
Msa0922790 MtrunA17_Chr2g0326361 41.624 197 78 3 6 196 14 179 1.91e-48 163
Msa0922790 MtrunA17_Chr6g0453451 45.312 192 72 3 6 195 20 180 2.18e-48 162
Msa0922790 MtrunA17_Chr4g0060931 45.055 182 67 2 6 185 17 167 2.46e-48 164
Msa0922790 MtrunA17_Chr8g0384721 45.699 186 65 5 6 187 7 160 6.93e-48 160
Msa0922790 MtrunA17_Chr7g0263931 38.991 218 96 3 2 213 7 193 1.97e-47 160
Msa0922790 MtrunA17_Chr7g0214071 46.739 184 60 4 4 185 13 160 2.38e-47 158
Msa0922790 MtrunA17_Chr3g0091921 46.448 183 65 3 6 186 16 167 2.82e-47 159
Msa0922790 MtrunA17_Chr4g0076731 46.703 182 63 5 8 188 56 204 2.98e-47 162
Msa0922790 MtrunA17_Chr1g0183741 36.066 244 117 4 4 243 8 216 2.99e-47 158
Msa0922790 MtrunA17_Chr6g0461661 42.105 190 75 3 3 188 15 173 3.46e-47 161
Msa0922790 MtrunA17_Chr6g0453131 41.206 199 76 3 6 194 15 182 1.41e-46 160
Msa0922790 MtrunA17_Chr7g0253011 40.670 209 84 4 4 206 15 189 5.52e-46 158
Msa0922790 MtrunA17_Chr4g0047841 40.488 205 66 3 6 185 15 188 1.31e-45 156
Msa0922790 MtrunA17_Chr7g0261411 43.956 182 65 3 4 183 8 154 2.20e-45 154
Msa0922790 MtrunA17_Chr8g0361731 36.986 219 95 4 8 214 16 203 6.34e-45 155
Msa0922790 MtrunA17_Chr5g0417001 37.615 218 94 4 8 214 16 202 8.62e-45 155
Msa0922790 MtrunA17_Chr2g0312321 41.500 200 83 4 1 199 6 172 6.44e-44 150
Msa0922790 MtrunA17_Chr3g0144271 49.091 165 50 5 5 166 22 155 7.36e-44 153
Msa0922790 MtrunA17_Chr2g0311651 39.175 194 73 3 8 186 24 187 1.79e-41 144
Msa0922790 MtrunA17_Chr7g0217721 46.250 160 55 2 4 163 17 145 6.28e-41 144
Msa0922790 MtrunA17_Chr4g0038751 37.629 194 82 3 8 198 17 174 5.31e-40 140
Msa0922790 MtrunA17_Chr2g0311661 38.144 194 75 3 8 186 23 186 2.85e-39 138
Msa0922790 MtrunA17_Chr7g0217711 44.375 160 58 1 4 163 17 145 3.36e-39 134
Msa0922790 MtrunA17_Chr5g0442771 38.947 190 73 4 8 185 20 178 2.71e-38 136
Msa0922790 MtrunA17_Chr8g0345671 43.889 180 63 7 6 182 11 155 6.88e-38 137
Msa0922790 MtrunA17_Chr8g0345691 42.778 180 65 6 6 182 12 156 8.93e-37 134
Msa0922790 MtrunA17_Chr8g0385991 39.062 192 75 5 6 188 14 172 2.61e-35 126
Msa0922790 MtrunA17_Chr2g0321631 33.195 241 122 7 7 238 5 215 2.88e-35 127
Msa0922790 MtrunA17_Chr4g0026141 36.898 187 86 5 6 187 5 164 2.05e-33 122
Msa0922790 MtrunA17_Chr8g0345721 39.779 181 97 6 1 173 26 202 3.28e-33 120
Msa0922790 MtrunA17_Chr3g0131911 37.368 190 76 4 6 185 14 170 1.97e-32 119
Msa0922790 MtrunA17_Chr2g0321741 40.373 161 58 4 26 186 12 134 7.13e-32 120
Msa0922790 MtrunA17_Chr8g0345711 40.237 169 67 5 6 171 12 149 1.33e-31 115
Msa0922790 MtrunA17_Chr3g0113001 50.000 114 54 1 75 185 3 116 3.70e-31 117
Msa0922790 MtrunA17_Chr7g0266701 35.789 190 87 7 5 186 3 165 3.86e-31 116
Msa0922790 MtrunA17_Chr8g0345731 36.216 185 77 5 6 185 24 172 1.55e-29 109
Msa0922790 MtrunA17_Chr3g0113031 54.444 90 37 1 100 185 3 92 3.65e-27 106
Msa0922790 MtrunA17_Chr4g0050701 31.746 189 82 4 6 186 11 160 7.25e-26 100
Msa0922790 MtrunA17_Chr8g0345741 31.088 193 91 5 17 206 2 155 6.07e-23 92.0
Msa0922790 MtrunA17_Chr7g0243371 47.619 84 42 2 85 166 12 95 4.42e-22 88.6
Msa0922790 MtrunA17_Chr8g0345701 33.898 177 68 6 2 161 3 147 4.88e-21 87.4
Msa0922790 MtrunA17_Chr3g0113011 50.000 52 26 0 4 55 17 68 4.88e-13 63.2
Msa0922790 MtrunA17_Chr3g0113041 52.083 48 23 0 10 57 23 70 2.23e-12 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0922790 AT3G17730.1 67.778 270 44 6 1 257 1 240 4.74e-124 353
Msa0922790 AT1G65910.1 50.929 269 84 4 1 250 1 240 4.18e-87 272
Msa0922790 AT5G17260.1 53.184 267 68 7 1 246 1 231 3.81e-86 265
Msa0922790 AT3G03200.1 66.129 186 33 2 1 185 1 157 3.17e-83 258
Msa0922790 AT1G54330.1 61.290 186 40 2 1 186 1 154 8.43e-73 225
Msa0922790 AT4G17980.1 53.684 190 55 3 1 186 1 161 1.56e-64 202
Msa0922790 AT5G46590.1 52.632 190 59 3 6 193 6 166 1.62e-64 204
Msa0922790 AT4G17980.2 53.684 190 55 3 1 186 1 161 3.62e-64 202
Msa0922790 AT3G10480.3 53.368 193 85 3 1 188 22 214 4.32e-61 201
Msa0922790 AT3G10480.2 52.660 188 60 2 1 188 22 180 1.78e-60 198
Msa0922790 AT5G46590.2 55.689 167 40 3 6 171 6 139 4.68e-60 192
Msa0922790 AT3G10480.1 52.910 189 59 3 1 188 22 181 8.20e-60 196
Msa0922790 AT3G10490.1 53.261 184 56 2 6 188 27 181 9.95e-60 189
Msa0922790 AT1G32510.1 47.926 217 69 5 6 213 6 187 5.29e-59 189
Msa0922790 AT3G10490.2 52.688 186 58 2 4 188 25 181 4.77e-58 191
Msa0922790 AT1G33060.1 49.730 185 64 1 1 185 19 174 9.50e-57 192
Msa0922790 AT1G33060.2 49.730 185 64 1 1 185 19 174 1.04e-56 192
Msa0922790 AT5G04410.1 48.980 196 71 1 2 197 5 171 1.39e-56 190
Msa0922790 AT3G10500.1 50.254 197 67 3 2 197 5 171 1.46e-56 190
Msa0922790 AT4G10350.1 43.128 211 92 2 5 215 8 190 1.55e-56 184
Msa0922790 AT4G35580.1 48.691 191 64 2 6 191 9 170 4.58e-56 188
Msa0922790 AT4G35580.2 48.691 191 64 2 6 191 9 170 5.38e-56 188
Msa0922790 AT4G35580.3 48.691 191 64 2 6 191 9 170 5.57e-56 188
Msa0922790 AT1G69490.1 40.969 227 99 5 6 228 9 204 3.33e-55 179
Msa0922790 AT1G71930.2 42.544 228 95 6 5 229 8 202 4.04e-55 181
Msa0922790 AT1G71930.1 42.544 228 95 6 5 229 8 202 4.04e-55 181
Msa0922790 AT1G33280.1 46.739 184 67 3 5 188 7 159 1.75e-54 178
Msa0922790 AT1G12260.2 47.222 180 65 4 6 185 7 156 3.04e-54 179
Msa0922790 AT1G12260.1 47.222 180 65 4 6 185 7 156 5.64e-54 179
Msa0922790 AT1G62700.1 47.222 180 65 3 6 185 7 156 9.00e-54 179
Msa0922790 AT1G62700.2 47.222 180 65 3 6 185 7 156 9.00e-54 179
Msa0922790 AT3G61910.1 43.000 200 73 3 6 192 11 182 1.46e-53 177
Msa0922790 AT2G46770.1 43.541 209 77 5 6 201 16 196 5.07e-53 176
Msa0922790 AT2G18060.3 46.774 186 67 4 1 185 4 158 8.02e-53 176
Msa0922790 AT2G18060.1 46.774 186 67 4 1 185 4 158 8.02e-53 176
Msa0922790 AT5G64060.1 45.685 197 78 1 1 197 1 168 9.45e-53 175
Msa0922790 AT1G79580.3 48.087 183 63 4 4 185 15 166 9.69e-53 176
Msa0922790 AT1G79580.5 48.087 183 63 4 4 185 15 166 9.69e-53 176
Msa0922790 AT1G79580.4 48.087 183 63 4 4 185 15 166 9.69e-53 176
Msa0922790 AT1G79580.2 48.087 183 63 4 4 185 15 166 9.69e-53 176
Msa0922790 AT1G79580.1 48.087 183 63 4 4 185 15 166 9.69e-53 176
Msa0922790 AT2G24430.2 50.820 183 56 4 5 185 15 165 1.20e-52 174
Msa0922790 AT2G24430.1 50.820 183 56 4 5 185 15 165 1.20e-52 174
Msa0922790 AT1G34180.4 47.368 190 83 1 8 197 18 190 1.33e-52 177
Msa0922790 AT4G36160.1 47.514 181 63 4 6 185 10 159 1.51e-52 175
Msa0922790 AT4G36160.3 47.514 181 63 4 6 185 10 159 1.51e-52 175
Msa0922790 AT4G36160.2 47.514 181 63 4 6 185 14 163 1.69e-52 175
Msa0922790 AT1G34180.2 47.368 190 83 1 8 197 18 190 3.18e-52 179
Msa0922790 AT1G34190.1 47.368 190 71 1 8 197 18 178 5.36e-52 178
Msa0922790 AT5G66300.1 47.802 182 64 4 5 185 11 162 5.97e-52 171
Msa0922790 AT5G09330.5 48.663 187 67 1 1 187 1 158 9.02e-52 176
Msa0922790 AT5G09330.2 48.663 187 67 1 1 187 1 158 9.02e-52 176
Msa0922790 AT5G09330.4 48.663 187 67 1 1 187 1 158 9.02e-52 176
Msa0922790 AT5G09330.3 48.663 187 67 1 1 187 1 158 9.02e-52 176
Msa0922790 AT5G09330.1 48.663 187 67 1 1 187 1 158 9.02e-52 176
Msa0922790 AT5G39610.1 46.237 186 67 2 4 187 18 172 2.56e-51 169
Msa0922790 AT3G18400.1 45.856 181 66 2 5 185 4 152 5.43e-51 169
Msa0922790 AT1G34180.3 46.316 190 73 1 8 197 18 178 5.69e-51 173
Msa0922790 AT5G07680.2 47.283 184 64 2 6 187 3 155 7.61e-51 169
Msa0922790 AT1G61110.1 44.845 194 63 4 6 186 16 178 9.55e-51 169
Msa0922790 AT5G07680.1 47.283 184 64 2 6 187 17 169 1.19e-50 169
Msa0922790 AT1G76420.1 45.274 201 76 4 5 203 21 189 1.21e-50 169
Msa0922790 AT1G32770.1 44.211 190 68 3 6 185 16 177 1.31e-50 170
Msa0922790 AT5G24590.2 42.009 219 96 3 1 217 8 197 1.35e-50 172
Msa0922790 AT1G34180.1 46.316 190 73 1 8 197 18 178 1.85e-50 174
Msa0922790 AT5G62380.2 43.478 184 74 3 2 185 3 156 2.49e-50 169
Msa0922790 AT5G62380.1 43.478 184 74 3 2 185 3 156 2.49e-50 169
Msa0922790 AT3G04070.2 41.753 194 70 3 5 186 9 171 8.47e-50 167
Msa0922790 AT4G27410.2 41.622 185 77 1 1 185 9 162 8.96e-50 166
Msa0922790 AT5G61430.1 47.283 184 64 3 6 187 16 168 9.71e-50 167
Msa0922790 AT3G15500.1 42.703 185 75 1 1 185 9 162 1.13e-49 166
Msa0922790 AT4G27410.3 42.703 185 92 2 1 185 9 179 1.27e-49 166
Msa0922790 AT1G01720.1 45.161 186 66 3 6 187 7 160 1.94e-49 165
Msa0922790 AT3G12977.1 42.289 201 84 3 1 200 13 182 3.32e-49 164
Msa0922790 AT3G15170.1 47.619 189 64 5 6 190 20 177 4.27e-49 164
Msa0922790 AT3G04070.1 40.191 209 66 4 5 185 9 186 8.40e-49 165
Msa0922790 AT1G52890.1 42.162 185 76 1 1 185 9 162 1.51e-48 163
Msa0922790 AT3G29035.1 45.604 182 66 2 4 183 22 172 1.56e-48 163
Msa0922790 AT5G53950.1 46.561 189 66 4 6 190 17 174 3.88e-48 164
Msa0922790 AT2G33480.1 45.000 180 65 2 6 185 15 160 8.18e-48 160
Msa0922790 AT2G02450.1 45.604 182 65 5 8 188 53 201 2.47e-47 162
Msa0922790 AT2G02450.2 45.604 182 65 5 8 188 53 201 3.62e-47 162
Msa0922790 AT5G18270.2 45.699 186 67 3 4 186 19 173 5.16e-47 160
Msa0922790 AT5G08790.1 43.455 191 71 4 2 187 3 161 7.51e-47 158
Msa0922790 AT3G49530.2 43.011 186 76 2 1 185 8 164 7.67e-47 161
Msa0922790 AT3G49530.1 43.011 186 76 2 1 185 8 164 1.08e-46 162
Msa0922790 AT5G18270.1 45.161 186 68 3 4 186 19 173 2.75e-46 158
Msa0922790 AT1G77450.1 35.688 269 130 7 6 266 10 243 2.80e-46 155
Msa0922790 AT2G33480.2 44.444 180 64 3 6 185 15 158 4.12e-46 155
Msa0922790 AT1G56010.2 41.748 206 79 6 1 199 14 185 9.59e-46 156
Msa0922790 AT3G15510.1 42.000 200 72 4 10 196 21 189 1.37e-45 157
Msa0922790 AT5G63790.1 35.496 262 116 7 4 251 48 270 5.91e-45 154
Msa0922790 AT3G04060.1 45.455 187 68 4 4 187 18 173 6.34e-45 154
Msa0922790 AT5G63790.2 35.496 262 116 7 4 251 58 280 6.85e-45 154
Msa0922790 AT1G32870.2 46.154 195 72 3 5 197 9 172 1.44e-44 157
Msa0922790 AT1G32870.1 46.154 195 72 3 5 197 9 172 1.71e-44 157
Msa0922790 AT1G32870.3 46.154 195 72 3 5 197 45 208 2.70e-44 157
Msa0922790 AT5G22290.1 41.714 175 66 2 8 182 23 161 3.20e-44 153
Msa0922790 AT5G39820.1 38.554 249 92 8 8 232 22 233 3.36e-44 152
Msa0922790 AT1G26870.1 37.395 238 102 6 6 227 16 222 4.14e-44 154
Msa0922790 AT5G13180.1 45.055 182 63 4 6 185 14 160 1.42e-43 149
Msa0922790 AT3G44290.2 42.286 175 64 3 8 182 16 153 1.66e-42 145
Msa0922790 AT2G17040.1 37.500 224 92 7 8 219 8 195 5.22e-42 145
Msa0922790 AT3G44290.1 42.286 175 64 3 8 182 16 153 1.07e-41 146
Msa0922790 AT2G27300.1 42.222 180 67 3 5 184 13 155 2.82e-41 145
Msa0922790 AT4G28530.1 42.714 199 59 6 6 185 10 172 3.02e-41 145
Msa0922790 AT2G43000.1 41.341 179 73 3 8 185 20 167 3.56e-41 143
Msa0922790 AT1G52880.1 42.857 189 65 4 10 186 21 178 7.10e-41 143
Msa0922790 AT5G04395.1 46.250 160 65 3 6 162 28 169 1.59e-40 139
Msa0922790 AT3G12977.2 51.818 110 52 1 92 200 20 129 1.95e-36 129
Msa0922790 AT4G10350.2 45.968 124 67 0 92 215 20 143 6.38e-35 127
Msa0922790 AT5G61430.2 58.163 98 39 1 92 187 8 105 1.24e-34 126
Msa0922790 AT1G56010.1 51.754 114 46 3 92 199 8 118 4.85e-33 121
Msa0922790 AT3G12910.1 38.462 195 71 7 8 185 23 185 1.17e-31 119
Msa0922790 AT2G33480.3 51.042 96 47 0 90 185 8 103 1.31e-29 111
Msa0922790 AT5G22380.1 34.783 184 88 6 9 187 8 164 4.74e-28 107
Msa0922790 AT3G44350.2 33.514 185 93 5 6 187 5 162 3.98e-27 105
Msa0922790 AT3G10490.4 62.500 80 29 1 110 188 2 81 6.41e-27 107
Msa0922790 AT3G10490.3 62.500 80 29 1 110 188 2 81 6.41e-27 107
Msa0922790 AT4G01520.1 36.646 161 68 4 7 162 5 136 1.90e-26 105
Msa0922790 AT4G01550.1 38.674 181 73 7 9 185 7 153 2.09e-26 107
Msa0922790 AT4G01540.3 37.342 158 67 4 9 162 7 136 5.35e-25 103
Msa0922790 AT4G01540.4 37.342 158 67 4 9 162 7 136 8.92e-25 102
Msa0922790 AT4G01540.1 37.342 158 67 4 9 162 7 136 9.28e-25 102
Msa0922790 AT4G01540.2 37.342 158 67 4 9 162 7 136 9.79e-25 102
Msa0922790 AT3G44350.1 36.076 158 72 4 6 161 5 135 2.61e-24 95.9
Msa0922790 AT4G28530.2 40.288 139 34 3 6 127 10 116 4.82e-23 96.3
Msa0922790 AT5G64530.1 30.476 210 85 7 4 197 1 165 1.96e-22 92.0
Msa0922790 AT5G64530.2 34.356 163 62 5 4 164 1 120 4.64e-22 90.1
Msa0922790 AT3G04420.2 31.522 184 90 5 7 188 4 153 4.45e-21 90.5
Msa0922790 AT1G02230.1 35.625 160 66 6 7 161 4 131 7.35e-21 90.9
Msa0922790 AT3G04420.1 31.522 184 90 5 7 188 4 153 7.56e-21 90.9
Msa0922790 AT2G43000.2 46.591 88 46 1 99 185 2 89 2.87e-20 86.3
Msa0922790 AT2G18060.2 51.389 72 31 2 115 185 2 70 1.43e-18 83.6
Msa0922790 AT3G56530.1 27.473 182 98 4 4 183 50 199 4.52e-18 82.8
Msa0922790 AT1G02250.1 30.939 181 84 7 7 182 4 148 9.11e-18 82.4
Msa0922790 AT1G01010.1 32.432 185 77 6 9 182 6 153 1.31e-17 82.4
Msa0922790 AT1G02220.1 30.435 184 89 6 7 188 4 150 1.80e-16 79.0
Msa0922790 AT5G22290.2 50.746 67 27 1 116 182 2 62 3.61e-16 76.3
Msa0922790 AT3G55210.1 26.178 191 94 4 6 183 11 167 1.20e-15 75.5

Find 74 sgRNAs with CRISPR-Local

Find 227 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCATTTCACATTCATTAT+TGG 0.178148 6_2:+62254197 None:intergenic
TTGGATTACCACCAGGTTTC+AGG 0.179522 6_2:-62258316 Msa0922790:CDS
TACTTATAAATTGGTGATAA+TGG 0.197648 6_2:-62253739 Msa0922790:three_prime_UTR
GATGATGCTCCTAGTATTTC+TGG 0.199026 6_2:+62254171 None:intergenic
TTATTATTATACTTATAAAT+TGG 0.252215 6_2:-62253748 Msa0922790:three_prime_UTR
TTCATTATTGGTTATGGTTT+GGG 0.265485 6_2:+62254209 None:intergenic
CTATTTGTTCTAAATCCATT+AGG 0.266100 6_2:+62257324 None:intergenic
TTCACATTCATTATTGGTTA+TGG 0.271178 6_2:+62254203 None:intergenic
TTTGGTGGGTGAACTTGTTT+AGG 0.272680 6_2:-62253706 Msa0922790:three_prime_UTR
TGTTTAGGGGTCATATTATA+AGG 0.276199 6_2:-62253691 Msa0922790:three_prime_UTR
TCATACCAATAGGTCTGTTT+TGG 0.299769 6_2:+62257247 None:intergenic
ATTCATTATTGGTTATGGTT+TGG 0.312843 6_2:+62254208 None:intergenic
TATTTGTTCTAAATCCATTA+GGG 0.345822 6_2:+62257325 None:intergenic
GATAATGGTTTGGTTTGGTT+TGG 0.347194 6_2:-62253724 Msa0922790:three_prime_UTR
TTGGTGGGTGAACTTGTTTA+GGG 0.354495 6_2:-62253705 Msa0922790:three_prime_UTR
AATGGTTTGGTTTGGTTTGG+TGG 0.363053 6_2:-62253721 Msa0922790:three_prime_UTR
TGAGGACAATACTGGCTTAC+AGG 0.364169 6_2:-62257133 Msa0922790:intron
GAGCAACAAGAGCAGGATAC+TGG 0.370822 6_2:-62257302 Msa0922790:CDS
CTCAAGGAATTCGAACTGAT+TGG 0.371866 6_2:-62257191 Msa0922790:CDS
AAGAAGACAAAGATGATTCA+TGG 0.372181 6_2:-62254134 Msa0922790:CDS
AAATGGAATCTGTTCTGATA+TGG 0.374346 6_2:-62254274 Msa0922790:CDS
TCATGCCAAAACAGACCTAT+TGG 0.385273 6_2:-62257252 Msa0922790:CDS
ATGGTTTGGTTTGGTTTGGT+GGG 0.403218 6_2:-62253720 Msa0922790:three_prime_UTR
ATAAATTGGTGATAATGGTT+TGG 0.412402 6_2:-62253734 Msa0922790:three_prime_UTR
TTGTGGTTGCACTGCCTTTG+AGG 0.414250 6_2:-62257738 Msa0922790:CDS
AAGACATTGGTTTACTATAG+AGG 0.419530 6_2:-62257222 Msa0922790:CDS
CATTTATAAAGATCAACTTC+AGG 0.421834 6_2:+62258212 None:intergenic
GCATAATATATGCAAGGTCT+AGG 0.422001 6_2:+62253859 None:intergenic
CTGTTACTAATTAACAGTTA+TGG 0.433176 6_2:+62253792 None:intergenic
TCTTTATAAATGTGAACCTT+GGG 0.434445 6_2:-62258201 Msa0922790:CDS
ATCTTTATAAATGTGAACCT+TGG 0.436895 6_2:-62258202 Msa0922790:CDS
ATCAATGAATATTTGAAAGC+TGG 0.444854 6_2:-62253984 Msa0922790:three_prime_UTR
TCAAGGAATTCGAACTGATT+GGG 0.449710 6_2:-62257190 Msa0922790:CDS
CGGGACCGAAAATACCCTAA+TGG 0.459128 6_2:-62257339 Msa0922790:CDS
TTGACAAGTTCTTCATCAGT+TGG 0.460855 6_2:+62258287 None:intergenic
AAAGAGTGTGAGGACAATAC+TGG 0.463279 6_2:-62257141 Msa0922790:CDS
AATGTCTTCTTCATACCAAT+AGG 0.469539 6_2:+62257237 None:intergenic
ACAAATAGAGCAACAAGAGC+AGG 0.482385 6_2:-62257309 Msa0922790:CDS
AAGAAAATTATGTCACCAGT+TGG 0.490536 6_2:-62258335 Msa0922790:exon
CTAATTAACAGTTATGGTAA+AGG 0.495222 6_2:+62253798 None:intergenic
TGAGTATAGCTCAGTTGGTA+AGG 0.512015 6_2:+62253831 None:intergenic
TTGGTGATAATGGTTTGGTT+TGG 0.514482 6_2:-62253729 Msa0922790:three_prime_UTR
GACTTAATGAAAATCAAGAT+TGG 0.521302 6_2:-62254012 Msa0922790:three_prime_UTR
ATTTCTTCACCACCAACCAT+TGG 0.521704 6_2:+62254069 None:intergenic
AAACCTGGTGGTAATCCAAC+TGG 0.525177 6_2:+62258320 None:intergenic
TTAGACTGTGGCCGCGATTG+TGG 0.529367 6_2:-62257700 Msa0922790:intron
CAATCGCGGCCACAGTCTAA+AGG 0.538895 6_2:+62257703 None:intergenic
TACCACTCTGGATCTCTACT+TGG 0.542100 6_2:+62257375 None:intergenic
CATAATATATGCAAGGTCTA+GGG 0.551697 6_2:+62253860 None:intergenic
TCTAATACACCAATGGTTGG+TGG 0.556914 6_2:-62254078 Msa0922790:CDS
TGTGAACCTTGGGAATTAGC+AGG 0.558601 6_2:-62258191 Msa0922790:intron
CCTCGTGAGTATAGCTCAGT+TGG 0.562915 6_2:+62253826 None:intergenic
GTATTCTTCTAATACACCAA+TGG 0.568650 6_2:-62254085 Msa0922790:CDS
TATTGGTATGAAGAAGACAT+TGG 0.580527 6_2:-62257235 Msa0922790:CDS
TTAATGAAAATCAAGATTGG+TGG 0.583088 6_2:-62254009 Msa0922790:three_prime_UTR
ATGATGTCTCCAGAAATACT+AGG 0.584004 6_2:-62254180 Msa0922790:CDS
GACAATGCATAATATATGCA+AGG 0.586470 6_2:+62253853 None:intergenic
TCTTCTAATACACCAATGGT+TGG 0.588359 6_2:-62254081 Msa0922790:CDS
GCAGGATACTGGAAATCTAC+CGG 0.591478 6_2:-62257291 Msa0922790:CDS
GGTCAGTGCAGCCGCAATTG+TGG 0.593828 6_2:-62257755 Msa0922790:CDS
TATGGACCTGCTAATTCCCA+AGG 0.609085 6_2:+62258185 None:intergenic
GCAGCCTGCAACCACAATCG+CGG 0.611746 6_2:+62257689 None:intergenic
TCACCAGTTGGATTACCACC+AGG 0.611908 6_2:-62258323 Msa0922790:CDS
CAATCAGTTCGAATTCCTTG+AGG 0.624122 6_2:+62257192 None:intergenic
AGGCAGTGCAACCACAATTG+CGG 0.632114 6_2:+62257744 None:intergenic
TGGTGGGTGAACTTGTTTAG+GGG 0.641941 6_2:-62253704 Msa0922790:three_prime_UTR
TATAGAGGAAGAGCTCCTCA+AGG 0.649242 6_2:-62257207 Msa0922790:CDS
TCTTGATGATAAAGAGTGTG+AGG 0.653615 6_2:-62257151 Msa0922790:CDS
AATTCATTACAGAAGATGCA+TGG 0.663634 6_2:-62254107 Msa0922790:CDS
GTTGGATGAAACCTGAAACC+TGG 0.669872 6_2:+62258305 None:intergenic
TCTGATATGGAAGAGCAACA+AGG 0.679765 6_2:-62254261 Msa0922790:CDS
TGCCAAGTAGAGATCCAGAG+TGG 0.689238 6_2:-62257377 Msa0922790:CDS
CCAACTGAGCTATACTCACG+AGG 0.700038 6_2:-62253826 Msa0922790:three_prime_UTR
GGATGAAACCTGAAACCTGG+TGG 0.791381 6_2:+62258308 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTCATTTATCAAATT+TGG - chr6_2:62253906-62253925 Msa0922790:three_prime_UTR 10.0%
!! ATTGAAAAATGAAAATAAAA+TGG + chr6_2:62253962-62253981 None:intergenic 10.0%
!! AATTAATTAAAAAAGTGATA+TGG + chr6_2:62256371-62256390 None:intergenic 10.0%
!! TATTATATTATCTTAGAATT+TGG + chr6_2:62257183-62257202 None:intergenic 10.0%
!!! ATTTTCATTTTTCAATATCA+TGG - chr6_2:62253966-62253985 Msa0922790:three_prime_UTR 15.0%
!!! TTTTCATTTTTCAATATCAT+GGG - chr6_2:62253967-62253986 Msa0922790:three_prime_UTR 15.0%
!! AAATATCACATTATTAAACA+TGG - chr6_2:62254080-62254099 Msa0922790:CDS 15.0%
!! TGAAAATTATCTAATTTCAT+AGG - chr6_2:62254159-62254178 Msa0922790:CDS 15.0%
!!! TAGATAATTTTCATGTTTTT+AGG + chr6_2:62254152-62254171 None:intergenic 15.0%
!! TGAAAATTATCTAATTTCAT+AGG - chr6_2:62254159-62254178 Msa0922790:CDS 15.0%
!! CTTAAATTAATTTATTCTGA+TGG - chr6_2:62254619-62254638 Msa0922790:intron 15.0%
!!! TATAGTTGATAGAATTTTAT+TGG - chr6_2:62255389-62255408 Msa0922790:intron 15.0%
!! GGATAATATATTAAAAATTG+TGG + chr6_2:62255506-62255525 None:intergenic 15.0%
!!! TGTTCAAATACATAATTTTA+AGG + chr6_2:62255592-62255611 None:intergenic 15.0%
!! TCCATAATAAAATGAAAAAA+GGG - chr6_2:62256601-62256620 Msa0922790:intron 15.0%
!! TAAATGTGTTAAAATCATAT+AGG + chr6_2:62257323-62257342 None:intergenic 15.0%
!!! AACACATTTAATATGATTTT+AGG - chr6_2:62257333-62257352 Msa0922790:CDS 15.0%
!! TATCTAAAGAGAAAAATCAA+TGG - chr6_2:62253795-62253814 Msa0922790:three_prime_UTR 20.0%
!! TGAAAATTCTCTAATTTCAT+AGG - chr6_2:62254126-62254145 Msa0922790:CDS 20.0%
!!! TATTTGTTCTAAATCCATTA+GGG + chr6_2:62254733-62254752 None:intergenic 20.0%
!! ATCAAGAAAATACCTAAAAA+TGG - chr6_2:62255112-62255131 Msa0922790:intron 20.0%
!!! TTATGTTTGATGCTTTTTAT+TGG + chr6_2:62255256-62255275 None:intergenic 20.0%
!!! GTTTAATTTCATATTGTAGA+TGG - chr6_2:62255425-62255444 Msa0922790:intron 20.0%
!!! ATATATTATCCACAATTTTC+AGG - chr6_2:62255515-62255534 Msa0922790:intron 20.0%
!! TTTAACGTTGTTTAAATATG+TGG + chr6_2:62255727-62255746 None:intergenic 20.0%
!! ATTAAAAACCAACGATAATT+TGG + chr6_2:62255753-62255772 None:intergenic 20.0%
!!! GTTTTTTCAGATCAAATATA+TGG + chr6_2:62255907-62255926 None:intergenic 20.0%
!! ATATAGTACATTAATTCCTT+AGG + chr6_2:62256032-62256051 None:intergenic 20.0%
!! AGAAATAAAACTATACTACT+AGG + chr6_2:62256129-62256148 None:intergenic 20.0%
!! AAAAAAACTTTGTCATATAG+AGG + chr6_2:62256247-62256266 None:intergenic 20.0%
!! TATATAACTTTGTCATATAG+AGG + chr6_2:62256283-62256302 None:intergenic 20.0%
!!! TTAATTTTTTTGAGTGACAT+TGG - chr6_2:62256389-62256408 Msa0922790:intron 20.0%
!! CTCCATAATAAAATGAAAAA+AGG - chr6_2:62256600-62256619 Msa0922790:intron 20.0%
!!! TCCCTTTTTTCATTTTATTA+TGG + chr6_2:62256605-62256624 None:intergenic 20.0%
!!! AATCATTTAAAGCATTTGAT+TGG + chr6_2:62256651-62256670 None:intergenic 20.0%
!!! ATCAAATGCTTTAAATGATT+AGG - chr6_2:62256651-62256670 Msa0922790:intron 20.0%
!! ACATTGATATAAATCATGTT+TGG - chr6_2:62256749-62256768 Msa0922790:intron 20.0%
!! TAAGTTATCCTAAAAACTTA+TGG - chr6_2:62256903-62256922 Msa0922790:intron 20.0%
!! AATTAGCTGAAAACAATTTA+TGG - chr6_2:62256927-62256946 Msa0922790:intron 20.0%
!!! GGAAATTTTAAGATACTTTT+AGG + chr6_2:62257239-62257258 None:intergenic 20.0%
!! AGTTATATGATAAGTGTTAA+TGG + chr6_2:62257490-62257509 None:intergenic 20.0%
!!! TACTTATAAATTGGTGATAA+TGG - chr6_2:62258316-62258335 Msa0922790:CDS 20.0%
! CATTTATAAAGATCAACTTC+AGG + chr6_2:62253846-62253865 None:intergenic 25.0%
! ATCTTTATAAATGTGAACCT+TGG - chr6_2:62253853-62253872 Msa0922790:three_prime_UTR 25.0%
! TCTTTATAAATGTGAACCTT+GGG - chr6_2:62253854-62253873 Msa0922790:three_prime_UTR 25.0%
!!! TGCAATTTTTAGCAATATCA+AGG + chr6_2:62254269-62254288 None:intergenic 25.0%
! TTGATATTGCTAAAAATTGC+AGG - chr6_2:62254268-62254287 Msa0922790:CDS 25.0%
! AAAAATTGCAGGAAAATATG+TGG - chr6_2:62254279-62254298 Msa0922790:CDS 25.0%
! TTATTTAGAGAGTAGTGATA+TGG + chr6_2:62254471-62254490 None:intergenic 25.0%
!! ATGTGTATGTATTTTCCATT+AGG - chr6_2:62254589-62254608 Msa0922790:intron 25.0%
! AATTTAAGAACTTAGCCTAA+TGG + chr6_2:62254607-62254626 None:intergenic 25.0%
!!! TTCTGATGGAAACATTTTTT+TGG - chr6_2:62254633-62254652 Msa0922790:intron 25.0%
!!! TAAATCCATTAGGGTATTTT+CGG + chr6_2:62254724-62254743 None:intergenic 25.0%
!! CTATTTGTTCTAAATCCATT+AGG + chr6_2:62254734-62254753 None:intergenic 25.0%
!! GGTATTTTCTTGATCATTTT+TGG + chr6_2:62255106-62255125 None:intergenic 25.0%
! ATACCTAAAAATGGTTTCAT+TGG - chr6_2:62255121-62255140 Msa0922790:intron 25.0%
! ATATATACACCTGAAAATTG+TGG + chr6_2:62255527-62255546 None:intergenic 25.0%
! TCATGATTAATTACGTCAAA+TGG - chr6_2:62255642-62255661 Msa0922790:intron 25.0%
! AATGGTTAATGAATCTAACA+AGG + chr6_2:62255688-62255707 None:intergenic 25.0%
!!! TTGAACTTAAAACTAGTCTT+TGG - chr6_2:62255810-62255829 Msa0922790:intron 25.0%
! AAGAAAAGAGTTATGAAAGT+AGG + chr6_2:62255861-62255880 None:intergenic 25.0%
!! TTTCATAACTCTTTTCTTTG+TGG - chr6_2:62255863-62255882 Msa0922790:intron 25.0%
!! TTCATAACTCTTTTCTTTGT+GGG - chr6_2:62255864-62255883 Msa0922790:intron 25.0%
! ATCAAAGAGTTCAGTTAATT+TGG - chr6_2:62256050-62256069 Msa0922790:intron 25.0%
! GGAGTTTATATAGTATCTAT+TGG + chr6_2:62256584-62256603 None:intergenic 25.0%
!! GCTAATTTCCATAAGTTTTT+AGG + chr6_2:62256914-62256933 None:intergenic 25.0%
!!! AAAACTGACTTCTAAAATGA+GGG + chr6_2:62257138-62257157 None:intergenic 25.0%
!!! TAAAACTGACTTCTAAAATG+AGG + chr6_2:62257139-62257158 None:intergenic 25.0%
! CTAAATGTATTGTAATCAAG+TGG + chr6_2:62257260-62257279 None:intergenic 25.0%
! TATAATGTACTCAACAATTG+AGG + chr6_2:62257359-62257378 None:intergenic 25.0%
! AAGATAGAATCATAGTGTAT+AGG + chr6_2:62257413-62257432 None:intergenic 25.0%
!! TTCATTATTGGTTATGGTTT+GGG + chr6_2:62257849-62257868 None:intergenic 25.0%
!! ATTCATTATTGGTTATGGTT+TGG + chr6_2:62257850-62257869 None:intergenic 25.0%
!! TTCACATTCATTATTGGTTA+TGG + chr6_2:62257855-62257874 None:intergenic 25.0%
! CATCATTTCACATTCATTAT+TGG + chr6_2:62257861-62257880 None:intergenic 25.0%
! GACTTAATGAAAATCAAGAT+TGG - chr6_2:62258043-62258062 Msa0922790:intron 25.0%
! TTAATGAAAATCAAGATTGG+TGG - chr6_2:62258046-62258065 Msa0922790:intron 25.0%
! ATCAATGAATATTTGAAAGC+TGG - chr6_2:62258071-62258090 Msa0922790:intron 25.0%
! CCAAAAAAAAGTTATGGTAA+AGG + chr6_2:62258157-62258176 None:intergenic 25.0%
!!! CCTTTACCATAACTTTTTTT+TGG - chr6_2:62258154-62258173 Msa0922790:intron 25.0%
!!! TTACCATAACTTTTTTTTGG+TGG - chr6_2:62258157-62258176 Msa0922790:intron 25.0%
! CTAATTAACAGTTATGGTAA+AGG + chr6_2:62258260-62258279 None:intergenic 25.0%
! CTGTTACTAATTAACAGTTA+TGG + chr6_2:62258266-62258285 None:intergenic 25.0%
!!! ATAAATTGGTGATAATGGTT+TGG - chr6_2:62258321-62258340 Msa0922790:CDS 25.0%
AAGAAAATTATGTCACCAGT+TGG - chr6_2:62253720-62253739 Msa0922790:three_prime_UTR 30.0%
!! AATTCTGAAACCATGATTCT+AGG + chr6_2:62254218-62254237 None:intergenic 30.0%
! TGAAACTTTTCTGTCTTTAC+CGG + chr6_2:62254786-62254805 None:intergenic 30.0%
AATGTCTTCTTCATACCAAT+AGG + chr6_2:62254821-62254840 None:intergenic 30.0%
TATTGGTATGAAGAAGACAT+TGG - chr6_2:62254820-62254839 Msa0922790:intron 30.0%
!! AAGACATTGGTTTACTATAG+AGG - chr6_2:62254833-62254852 Msa0922790:intron 30.0%
!!! ATCCTCTACAACTAGTTTTA+CGG + chr6_2:62255041-62255060 None:intergenic 30.0%
CAATGCAAATAACTTCAACA+AGG + chr6_2:62255313-62255332 None:intergenic 30.0%
TTAAACCTCCAAATTATCGT+TGG - chr6_2:62255742-62255761 Msa0922790:intron 30.0%
AAAAACCAACGATAATTTGG+AGG + chr6_2:62255750-62255769 None:intergenic 30.0%
AGAGTTATGAAAGTAGGTAA+AGG + chr6_2:62255855-62255874 None:intergenic 30.0%
AGTAAATAACCTTGAACCTA+AGG - chr6_2:62256013-62256032 Msa0922790:intron 30.0%
ACATTAATTCCTTAGGTTCA+AGG + chr6_2:62256025-62256044 None:intergenic 30.0%
AAGTGATATGGATCATAAGT+AGG + chr6_2:62256359-62256378 None:intergenic 30.0%
ATTCTTCTCATAATCCATGA+AGG - chr6_2:62256461-62256480 Msa0922790:intron 30.0%
!! ACAAAATGAAAGTGATGGAT+AGG + chr6_2:62256520-62256539 None:intergenic 30.0%
CTTATGCCATATAAGTATCT+AGG + chr6_2:62256695-62256714 None:intergenic 30.0%
!!! ATAGACACTTTTGAGACTAT+GGG + chr6_2:62257094-62257113 None:intergenic 30.0%
!!! TATAGACACTTTTGAGACTA+TGG + chr6_2:62257095-62257114 None:intergenic 30.0%
! CAGTTTTACAATGTTGAGTT+AGG - chr6_2:62257151-62257170 Msa0922790:CDS 30.0%
!!! GATACTTTTAGGTTATTGAG+AGG + chr6_2:62257228-62257247 None:intergenic 30.0%
TTTGTGGCATAAAGATTCAA+AGG + chr6_2:62257285-62257304 None:intergenic 30.0%
ATCTTACTTTAGCACTACTT+AGG - chr6_2:62257428-62257447 Msa0922790:intron 30.0%
ATTCAATGACAAACACTTGT+GGG + chr6_2:62257675-62257694 None:intergenic 30.0%
TATTCAATGACAAACACTTG+TGG + chr6_2:62257676-62257695 None:intergenic 30.0%
AAATGGAATCTGTTCTGATA+TGG - chr6_2:62257781-62257800 Msa0922790:intron 30.0%
AAGAAGACAAAGATGATTCA+TGG - chr6_2:62257921-62257940 Msa0922790:intron 30.0%
AATTCATTACAGAAGATGCA+TGG - chr6_2:62257948-62257967 Msa0922790:intron 30.0%
GTATTCTTCTAATACACCAA+TGG - chr6_2:62257970-62257989 Msa0922790:intron 30.0%
CATAATATATGCAAGGTCTA+GGG + chr6_2:62258198-62258217 None:intergenic 30.0%
GACAATGCATAATATATGCA+AGG + chr6_2:62258205-62258224 None:intergenic 30.0%
TGTTTAGGGGTCATATTATA+AGG - chr6_2:62258364-62258383 Msa0922790:five_prime_UTR 30.0%
TTGACAAGTTCTTCATCAGT+TGG + chr6_2:62253771-62253790 None:intergenic 35.0%
ATTTCATAGGCCTAGAATCA+TGG - chr6_2:62254205-62254224 Msa0922790:CDS 35.0%
GAATCATGGTTTCAGAATTG+CGG - chr6_2:62254219-62254238 Msa0922790:CDS 35.0%
ACAACGCTAAGAAACACAAT+AGG - chr6_2:62254397-62254416 Msa0922790:intron 35.0%
GAGTAGTGATATGGAAACTT+AGG + chr6_2:62254462-62254481 None:intergenic 35.0%
! TCATACCAATAGGTCTGTTT+TGG + chr6_2:62254811-62254830 None:intergenic 35.0%
TCAAGGAATTCGAACTGATT+GGG - chr6_2:62254865-62254884 Msa0922790:intron 35.0%
! TCTTGATGATAAAGAGTGTG+AGG - chr6_2:62254904-62254923 Msa0922790:intron 35.0%
ATCCTCTATCATCAGCTTTA+CGG - chr6_2:62254982-62255001 Msa0922790:intron 35.0%
! TAGTTGTAGAGGATCCATTT+TGG - chr6_2:62255047-62255066 Msa0922790:intron 35.0%
ATACACACATCACACCAAAA+TGG + chr6_2:62255064-62255083 None:intergenic 35.0%
!! CGACCAATGAAACCATTTTT+AGG + chr6_2:62255127-62255146 None:intergenic 35.0%
CGCGAATTTCCATAATGTTA+AGG - chr6_2:62255155-62255174 Msa0922790:intron 35.0%
CATTGCATGCCTTAACATTA+TGG + chr6_2:62255167-62255186 None:intergenic 35.0%
ATCAGTCTAGCACTTAATCA+TGG + chr6_2:62255370-62255389 None:intergenic 35.0%
TACGTCAAATGGATGATAAG+TGG - chr6_2:62255653-62255672 Msa0922790:intron 35.0%
GGTTAATTATGTGCAGTGAA+TGG + chr6_2:62255706-62255725 None:intergenic 35.0%
! CAGTTTTCCACGTTCTTTTA+CGG + chr6_2:62256077-62256096 None:intergenic 35.0%
! CCATCACTTTCATTTTGTGT+CGG - chr6_2:62256522-62256541 Msa0922790:intron 35.0%
! ATGCTTTAAATGATTAGGCC+AGG - chr6_2:62256656-62256675 Msa0922790:intron 35.0%
! TGCTTTAAATGATTAGGCCA+GGG - chr6_2:62256657-62256676 Msa0922790:intron 35.0%
! TATAAGTATCTAGGACCTCA+TGG + chr6_2:62256686-62256705 None:intergenic 35.0%
TGAGGTCCTAGATACTTATA+TGG - chr6_2:62256686-62256705 Msa0922790:intron 35.0%
!! GTCTCAAAAGTGTCTATAAG+CGG - chr6_2:62257097-62257116 Msa0922790:intron 35.0%
GACAATCTCTGATAAGTTTG+TGG + chr6_2:62257301-62257320 None:intergenic 35.0%
AATGCAATCAAGCTCGTTAA+GGG + chr6_2:62257725-62257744 None:intergenic 35.0%
TGTCGTGTGTTCAAGAAAAA+TGG - chr6_2:62257764-62257783 Msa0922790:CDS 35.0%
ATGATGTCTCCAGAAATACT+AGG - chr6_2:62257875-62257894 Msa0922790:intron 35.0%
TCTTCTAATACACCAATGGT+TGG - chr6_2:62257974-62257993 Msa0922790:intron 35.0%
CCACCACCAAAAAAAAGTTA+TGG + chr6_2:62258163-62258182 None:intergenic 35.0%
!!! CCATAACTTTTTTTTGGTGG+TGG - chr6_2:62258160-62258179 Msa0922790:intron 35.0%
GCATAATATATGCAAGGTCT+AGG + chr6_2:62258199-62258218 None:intergenic 35.0%
!! TTGGTGATAATGGTTTGGTT+TGG - chr6_2:62258326-62258345 Msa0922790:CDS 35.0%
!! GATAATGGTTTGGTTTGGTT+TGG - chr6_2:62258331-62258350 Msa0922790:exon 35.0%
AGTTCTTGCATCAAAGACCT+TGG - chr6_2:62254037-62254056 Msa0922790:exon 40.0%
! CCACAGTCTAAAGGTTTTTG+AGG + chr6_2:62254346-62254365 None:intergenic 40.0%
CCTCAAAAACCTTTAGACTG+TGG - chr6_2:62254343-62254362 Msa0922790:intron 40.0%
!! GATCCAGAGTGGTACTTTTT+CGG - chr6_2:62254689-62254708 Msa0922790:intron 40.0%
ACAAATAGAGCAACAAGAGC+AGG - chr6_2:62254746-62254765 Msa0922790:intron 40.0%
TCATGCCAAAACAGACCTAT+TGG - chr6_2:62254803-62254822 Msa0922790:intron 40.0%
CAATCAGTTCGAATTCCTTG+AGG + chr6_2:62254866-62254885 None:intergenic 40.0%
CTCAAGGAATTCGAACTGAT+TGG - chr6_2:62254864-62254883 Msa0922790:intron 40.0%
! AAAGAGTGTGAGGACAATAC+TGG - chr6_2:62254914-62254933 Msa0922790:intron 40.0%
CACCGTAAAACTAGTTGTAG+AGG - chr6_2:62255036-62255055 Msa0922790:intron 40.0%
GAAAGTAGGTAAAGGCCAAA+GGG + chr6_2:62255847-62255866 None:intergenic 40.0%
TGAAAGTAGGTAAAGGCCAA+AGG + chr6_2:62255848-62255867 None:intergenic 40.0%
ATTTGGACCGTAAAAGAACG+TGG - chr6_2:62256067-62256086 Msa0922790:intron 40.0%
AAAGAACGTGGAAAACTGCA+TGG - chr6_2:62256079-62256098 Msa0922790:intron 40.0%
ATGAGGTGTACAAACCTTCA+TGG + chr6_2:62256478-62256497 None:intergenic 40.0%
!! AGGAGAATTGCTGCTTTATG+AGG + chr6_2:62256495-62256514 None:intergenic 40.0%
!! ATGAAAGTGATGGATAGGAC+AGG + chr6_2:62256515-62256534 None:intergenic 40.0%
CCGACACAAAATGAAAGTGA+TGG + chr6_2:62256525-62256544 None:intergenic 40.0%
!! CAAACACTTGTGAGAGTGTT+TGG + chr6_2:62257035-62257054 None:intergenic 40.0%
! TTTGAGACTATGGGCATGTT+TGG + chr6_2:62257085-62257104 None:intergenic 40.0%
CAAACACTTGTGGGATATGA+CGG + chr6_2:62257666-62257685 None:intergenic 40.0%
CAATGCAATCAAGCTCGTTA+AGG + chr6_2:62257726-62257745 None:intergenic 40.0%
TCTGATATGGAAGAGCAACA+AGG - chr6_2:62257794-62257813 Msa0922790:intron 40.0%
GATGATGCTCCTAGTATTTC+TGG + chr6_2:62257887-62257906 None:intergenic 40.0%
TCTAATACACCAATGGTTGG+TGG - chr6_2:62257977-62257996 Msa0922790:intron 40.0%
ATTTCTTCACCACCAACCAT+TGG + chr6_2:62257989-62258008 None:intergenic 40.0%
!!! ACTTTTTTTTGGTGGTGGTC+AGG - chr6_2:62258165-62258184 Msa0922790:intron 40.0%
!!! CTTTTTTTTGGTGGTGGTCA+GGG - chr6_2:62258166-62258185 Msa0922790:intron 40.0%
! TGAGTATAGCTCAGTTGGTA+AGG + chr6_2:62258227-62258246 None:intergenic 40.0%
!! AATGGTTTGGTTTGGTTTGG+TGG - chr6_2:62258334-62258353 Msa0922790:exon 40.0%
!! ATGGTTTGGTTTGGTTTGGT+GGG - chr6_2:62258335-62258354 Msa0922790:exon 40.0%
! TTTGGTGGGTGAACTTGTTT+AGG - chr6_2:62258349-62258368 Msa0922790:five_prime_UTR 40.0%
! TTGGTGGGTGAACTTGTTTA+GGG - chr6_2:62258350-62258369 Msa0922790:five_prime_UTR 40.0%
AAACCTGGTGGTAATCCAAC+TGG + chr6_2:62253738-62253757 None:intergenic 45.0%
TTGGATTACCACCAGGTTTC+AGG - chr6_2:62253739-62253758 Msa0922790:three_prime_UTR 45.0%
GTTGGATGAAACCTGAAACC+TGG + chr6_2:62253753-62253772 None:intergenic 45.0%
TGTGAACCTTGGGAATTAGC+AGG - chr6_2:62253864-62253883 Msa0922790:three_prime_UTR 45.0%
TATGGACCTGCTAATTCCCA+AGG + chr6_2:62253873-62253892 None:intergenic 45.0%
CATTGCAGAAAGTTGCACCA+AGG + chr6_2:62254057-62254076 None:intergenic 45.0%
TGGTTTCAGAATTGCGGCTA+CGG - chr6_2:62254225-62254244 Msa0922790:CDS 45.0%
!!! GGTTTTTGAGGTCTCCTCAA+AGG + chr6_2:62254334-62254353 None:intergenic 45.0%
TACCACTCTGGATCTCTACT+TGG + chr6_2:62254683-62254702 None:intergenic 45.0%
!!! AGTGGTACTTTTTCGGACCA+CGG - chr6_2:62254696-62254715 Msa0922790:intron 45.0%
GCAGGATACTGGAAATCTAC+CGG - chr6_2:62254764-62254783 Msa0922790:intron 45.0%
TATAGAGGAAGAGCTCCTCA+AGG - chr6_2:62254848-62254867 Msa0922790:intron 45.0%
!! TGAGGACAATACTGGCTTAC+AGG - chr6_2:62254922-62254941 Msa0922790:intron 45.0%
CACCGTAAAGCTGATGATAG+AGG + chr6_2:62254987-62255006 None:intergenic 45.0%
!! CAAAGACTCGTGAGAGTGTT+TGG + chr6_2:62256983-62257002 None:intergenic 45.0%
AAGCTCGTTAAGGGTCTGTT+TGG + chr6_2:62257716-62257735 None:intergenic 45.0%
AACGAGCTTGATTGCATTGC+AGG - chr6_2:62257727-62257746 Msa0922790:CDS 45.0%
! TGGTGGGTGAACTTGTTTAG+GGG - chr6_2:62258351-62258370 Msa0922790:five_prime_UTR 45.0%
!! AATAATATAAATAAAGAATA+TGG + chr6_2:62253891-62253910 None:intergenic 5.0%
!!! CTTTATATTTTTTTATTATA+AGG - chr6_2:62256180-62256199 Msa0922790:intron 5.0%
!! TTATTATTATACTTATAAAT+TGG - chr6_2:62258307-62258326 Msa0922790:CDS 5.0%
TCACCAGTTGGATTACCACC+AGG - chr6_2:62253732-62253751 Msa0922790:three_prime_UTR 50.0%
GGATGAAACCTGAAACCTGG+TGG + chr6_2:62253750-62253769 None:intergenic 50.0%
AGGCAGTGCAACCACAATTG+CGG + chr6_2:62254314-62254333 None:intergenic 50.0%
TTGTGGTTGCACTGCCTTTG+AGG - chr6_2:62254317-62254336 Msa0922790:intron 50.0%
TGCCAAGTAGAGATCCAGAG+TGG - chr6_2:62254678-62254697 Msa0922790:intron 50.0%
!! GGTCCGAAAAAGTACCACTC+TGG + chr6_2:62254695-62254714 None:intergenic 50.0%
!!! GTGGTACTTTTTCGGACCAC+GGG - chr6_2:62254697-62254716 Msa0922790:intron 50.0%
!! TTAGGGTATTTTCGGTCCCG+TGG + chr6_2:62254716-62254735 None:intergenic 50.0%
CGGGACCGAAAATACCCTAA+TGG - chr6_2:62254716-62254735 Msa0922790:intron 50.0%
GAGCAACAAGAGCAGGATAC+TGG - chr6_2:62254753-62254772 Msa0922790:intron 50.0%
TAAAGGCCAAAGGGTCAGGT+GGG + chr6_2:62255838-62255857 None:intergenic 50.0%
TAGGTAAAGGCCAAAGGGTC+AGG + chr6_2:62255842-62255861 None:intergenic 50.0%
! ATTAGGCCAGGGTATCCATG+AGG - chr6_2:62256668-62256687 Msa0922790:intron 50.0%
CCTCGTGAGTATAGCTCAGT+TGG + chr6_2:62258232-62258251 None:intergenic 50.0%
CCAACTGAGCTATACTCACG+AGG - chr6_2:62258229-62258248 Msa0922790:CDS 50.0%
CAATCGCGGCCACAGTCTAA+AGG + chr6_2:62254355-62254374 None:intergenic 55.0%
TTAGACTGTGGCCGCGATTG+TGG - chr6_2:62254355-62254374 Msa0922790:intron 55.0%
GTAAAGGCCAAAGGGTCAGG+TGG + chr6_2:62255839-62255858 None:intergenic 55.0%
CTAGGACCTCATGGATACCC+TGG + chr6_2:62256677-62256696 None:intergenic 55.0%
GGTCAGTGCAGCCGCAATTG+TGG - chr6_2:62254300-62254319 Msa0922790:CDS 60.0%
GCAGCCTGCAACCACAATCG+CGG + chr6_2:62254369-62254388 None:intergenic 60.0%
! TTGGTGCCCACCTGACCCTT+TGG - chr6_2:62255829-62255848 Msa0922790:intron 60.0%
GTGGCCGCGATTGTGGTTGC+AGG - chr6_2:62254362-62254381 Msa0922790:intron 65.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 62253690 62258387 62253690 ID=Msa0922790;Name=Msa0922790
chr6_2 mRNA 62253690 62258387 62253690 ID=Msa0922790-mRNA-1;Parent=Msa0922790;Name=Msa0922790-mRNA-1;_AED=0.06;_eAED=0.06;_QI=39|0.33|0.75|0.75|1|1|4|354|268
chr6_2 exon 62253690 62254328 62253690 ID=Msa0922790-mRNA-1:exon:9637;Parent=Msa0922790-mRNA-1
chr6_2 exon 62257134 62257411 62257134 ID=Msa0922790-mRNA-1:exon:9636;Parent=Msa0922790-mRNA-1
chr6_2 exon 62257701 62257787 62257701 ID=Msa0922790-mRNA-1:exon:9635;Parent=Msa0922790-mRNA-1
chr6_2 exon 62258192 62258387 62258192 ID=Msa0922790-mRNA-1:exon:9634;Parent=Msa0922790-mRNA-1
chr6_2 five_prime_UTR 62258349 62258387 62258349 ID=Msa0922790-mRNA-1:five_prime_utr;Parent=Msa0922790-mRNA-1
chr6_2 CDS 62258192 62258348 62258192 ID=Msa0922790-mRNA-1:cds;Parent=Msa0922790-mRNA-1
chr6_2 CDS 62257701 62257787 62257701 ID=Msa0922790-mRNA-1:cds;Parent=Msa0922790-mRNA-1
chr6_2 CDS 62257134 62257411 62257134 ID=Msa0922790-mRNA-1:cds;Parent=Msa0922790-mRNA-1
chr6_2 CDS 62254044 62254328 62254044 ID=Msa0922790-mRNA-1:cds;Parent=Msa0922790-mRNA-1
chr6_2 three_prime_UTR 62253690 62254043 62253690 ID=Msa0922790-mRNA-1:three_prime_utr;Parent=Msa0922790-mRNA-1
Gene Sequence

>Msa0922790

ATGTCACCAGTTGGATTACCACCAGGTTTCAGGTTTCATCCAACTGATGAAGAACTTGTCAATTATTATCTAAAGAGAAAAATCAATGGTCAAGAAATTGAACTTGATATAATTCCTGAAGTTGATCTTTATAAATGTGAACCTTGGGAATTAGCAGGAAAATATGTGGTCAGTGCAGCCGCAATTGTGGTTGCACTGCCTTTGAGGAGACCTCAAAAACCTTTAGACTGTGGCCGCGATTGTGAGAAATCATTTTTGCCAAGTAGAGATCCAGAGTGGTACTTTTTCGGACCACGGGACCGAAAATACCCTAATGGATTTAGAACAAATAGAGCAACAAGAGCAGGATACTGGAAATCTACCGGTAAAGACAGAAAAGTTTCATGCCAAAACAGACCTATTGGTATGAAGAAGACATTGGTTTACTATAGAGGAAGAGCTCCTCAAGGAATTCGAACTGATTGGGTTATGCATGAGTATCGTCTTGATGATAAAGAGTGTGAGGACAATACTGGCTTACAGGATACGTATGCATTGTGTCGTGTGTTCAAGAAAAATGGAATCTGTTCTGATATGGAAGAGCAACAAGGACAATGTAGCATGTTACAAATTGAATGTTCCCAAACCATAACCAATAATGAATGTGAAATGATGTCTCCAGAAATACTAGGAGCATCATCTTCATGTTTAGAAGAAGAAGACAAAGATGATTCATGGATGCAATTCATTACAGAAGATGCATGGTATTCTTCTAATACACCAATGGTTGGTGGTGAAGAAATTTCACATGTTACATTTACAAATTAA
Protein sequence

>Msa0922790

MSPVGLPPGFRFHPTDEELVNYYLKRKINGQEIELDIIPEVDLYKCEPWELAGKYVVSAAAIVVALPLRRPQKPLDCGRDCEKSFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRKVSCQNRPIGMKKTLVYYRGRAPQGIRTDWVMHEYRLDDKECEDNTGLQDTYALCRVFKKNGICSDMEEQQGQCSMLQIECSQTITNNECEMMSPEILGASSSCLEEEDKDDSWMQFITEDAWYSSNTPMVGGEEISHVTFTN*