AlfalfaGEDB | Msa0922830

M. sativa cultivar zhongmu-4 / Msa0922830

KEGG: -
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009835 GO:0009889 GO:0009908 GO:0009987 GO:0010150 GO:0010154 GO:0010468 GO:0010556 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071695 GO:0080090 GO:0090567 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02365.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0922830	QSD99826.1	83.043	230	32	2	1	223	1	230	1.17e-131	381

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0922830	sp\|Q9FY93\|NAC83_ARATH	73.653	167	42	1	1	165	1	167	8.61e-90	267

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa0922830	TF	NAC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0922830	MtrunA17_Chr7g0214071	78.516	256	24	6	1	225	1	256	4.17e-131	369
Msa0922830	MtrunA17_Chr8g0385991	61.364	176	57	3	1	166	1	175	1.38e-73	223
Msa0922830	MtrunA17_Chr3g0131911	59.551	178	60	3	1	166	1	178	1.75e-68	210
Msa0922830	MtrunA17_Chr4g0047841	54.857	175	50	3	13	158	14	188	2.34e-57	185
Msa0922830	MtrunA17_Chr7g0252971	46.847	222	89	8	11	203	5	226	3.61e-57	184
Msa0922830	MtrunA17_Chr4g0042561	53.672	177	70	4	13	179	8	182	1.73e-56	180
Msa0922830	MtrunA17_Chr2g0318101	56.790	162	53	3	14	158	15	176	4.71e-56	182
Msa0922830	MtrunA17_Chr7g0243371	89.773	88	9	0	59	146	12	99	5.77e-55	171
Msa0922830	MtrunA17_Chr5g0417791	56.329	158	57	3	12	159	1	156	6.36e-55	176
Msa0922830	MtrunA17_Chr7g0263931	47.368	190	89	4	9	188	6	194	1.29e-54	177

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0922830	AT5G13180.1	73.653	167	42	1	1	165	1	167	8.75e-91	267
Msa0922830	AT2G33480.2	59.024	205	80	3	1	203	1	203	2.13e-83	249
Msa0922830	AT2G33480.1	58.454	207	80	3	1	203	1	205	3.64e-83	249
Msa0922830	AT1G77450.1	49.746	197	85	4	10	196	6	198	1.68e-55	177
Msa0922830	AT1G69490.1	57.143	161	56	4	14	164	9	166	2.73e-55	177
Msa0922830	AT1G61110.1	56.287	167	54	4	10	158	12	177	4.01e-55	179
Msa0922830	AT5G39610.1	45.714	210	99	5	12	208	18	225	2.69e-54	176
Msa0922830	AT3G04070.2	54.118	170	62	4	8	161	4	173	4.03e-54	177
Msa0922830	AT1G65910.1	46.377	207	93	6	12	210	4	200	1.68e-53	182
Msa0922830	AT5G07680.1	53.086	162	66	4	11	164	14	173	4.56e-53	174

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Find 50 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAGGATGGGATTGAGG+AGG	0.660083	6_2:-62478600	None:intergenic
AAAGAAGCCAAGTATCCAAA+TGG	0.440359	6_2:+62478073	Msa0922830:CDS
AAGAAGCCAAGTATCCAAAT+GGG	0.526074	6_2:+62478074	Msa0922830:CDS
AAGATCAACTTCAGGAATTA+TGG	0.254052	6_2:-62477798	None:intergenic
AAGCATTTCCAAAAGAGGAT+GGG	0.533996	6_2:-62478610	None:intergenic
AATGGAGAGGAGACAGTGAA+AGG	0.524667	6_2:+62478449	Msa0922830:CDS
ACAACAAGTTCTTCATCTGT+TGG	0.464543	6_2:-62477731	None:intergenic
ACTTCAGGAATTATGGAAGC+AGG	0.531208	6_2:-62477791	None:intergenic
AGAAAGACAGACCAAGGGGT+TGG	0.554284	6_2:-62478284	None:intergenic
AGAGGATGGGATTGAGGAGG+AGG	0.387672	6_2:-62478597	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGATCAACTTCAGGAATTA+TGG	-	chr6_2:62477801-62477820	None:intergenic	30.0%
TAGTAGAAGTTATCATGTTC+CGG	-	chr6_2:62477963-62477982	None:intergenic	30.0%
AAGATCAACTTCAGGAATTA+TGG	-	chr6_2:62477801-62477820	None:intergenic	30.0%
TAGTAGAAGTTATCATGTTC+CGG	-	chr6_2:62477963-62477982	None:intergenic	30.0%
CTTCATCTGTTGGATGAAAA+CGG	-	chr6_2:62477724-62477743	None:intergenic	35.0%
ACAACAAGTTCTTCATCTGT+TGG	-	chr6_2:62477734-62477753	None:intergenic	35.0%
TGTTCAATACTTGAAGCGTA+AGG	+	chr6_2:62477751-62477770	Msa0922830:CDS	35.0%
GAATTATGGAAGCAGGTAAA+GGG	-	chr6_2:62477787-62477806	None:intergenic	35.0%
AAAGAAGCCAAGTATCCAAA+TGG	+	chr6_2:62478073-62478092	Msa0922830:CDS	35.0%
AAGAAGCCAAGTATCCAAAT+GGG	+	chr6_2:62478074-62478093	Msa0922830:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_2	gene	62477668	62478634	62477668	ID=Msa0922830;Name=Msa0922830
chr6_2	mRNA	62477668	62478634	62477668	ID=Msa0922830-mRNA-1;Parent=Msa0922830;Name=Msa0922830-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0\|0\|0\|1\|1\|1\|3\|0\|225
chr6_2	exon	62477668	62477848	62477668	ID=Msa0922830-mRNA-1:exon:9676;Parent=Msa0922830-mRNA-1
chr6_2	exon	62478038	62478294	62478038	ID=Msa0922830-mRNA-1:exon:9677;Parent=Msa0922830-mRNA-1
chr6_2	exon	62478395	62478634	62478395	ID=Msa0922830-mRNA-1:exon:9678;Parent=Msa0922830-mRNA-1
chr6_2	CDS	62477668	62477848	62477668	ID=Msa0922830-mRNA-1:cds;Parent=Msa0922830-mRNA-1
chr6_2	CDS	62478038	62478294	62478038	ID=Msa0922830-mRNA-1:cds;Parent=Msa0922830-mRNA-1
chr6_2	CDS	62478395	62478634	62478395	ID=Msa0922830-mRNA-1:cds;Parent=Msa0922830-mRNA-1

Gene Sequence

>Msa0922830

ATGGACAAGATGAATTTTGTGAAGAATGGTGAAGTGAGATTGCCACCAGGTTTCCGTTTTCATCCAACAGATGAAGAACTTGTTGTTCAATACTTGAAGCGTAAGGTCTTCTCTTTCCCTTTACCTGCTTCCATAATTCCTGAAGTTGATCTTTGCAAGTCTGATCCTTGGGATTTACCTGGTGATATGGAACAAGAGAGGTACTTTTTCAGTAGAAAAGAAGCCAAGTATCCAAATGGGAACCGATCTAAGAGAGCTACAAACTCTGGTTACTGGAAAGCTACTGGTTTGGACAAACAAATCATGAATTCAAAGACTCGTGAAATTGTTGGCATGAAGAAAACTCTTGTTTTCTACAGAGGCAAACCACCTCATGGTTCCAGAACTGATTGGATCATGAATGAATATCGCCTCACTTCCTCTCACTCCAACCCCTTGAATGAAAATTGGGTTCTGTGTCGCATATTTCTGAAGAGGAGAGGTGGTGCTAAAAATGGAGAGGAGACAGTGAAAGGAGTGAAGCCAAGCAATGACAGCAGTTTTGGTGAGGTGAAGAAGAACTCAGCTTCAACTTCAAGTTCAAAAGTGGTTGTTTTCTATGATTTCTTGGCAGAGAAGAAGAAAAATTCTGATGCATCCTCCTCCTCCTCAATCCCATCCTCTTTTGGAAATGCTTAA

Protein sequence

>Msa0922830

MDKMNFVKNGEVRLPPGFRFHPTDEELVVQYLKRKVFSFPLPASIIPEVDLCKSDPWDLPGDMEQERYFFSRKEAKYPNGNRSKRATNSGYWKATGLDKQIMNSKTREIVGMKKTLVFYRGKPPHGSRTDWIMNEYRLTSSHSNPLNENWVLCRIFLKRRGGAKNGEETVKGVKPSNDSSFGEVKKNSASTSSSKVVVFYDFLAEKKKNSDASSSSSIPSSFGNA*