Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0922840 | XP_013455733.1 | 71.691 | 272 | 35 | 6 | 1 | 268 | 1 | 234 | 4.27e-116 | 342 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0922840 | sp|O64703|AGL29_ARATH | 31.646 | 158 | 99 | 5 | 9 | 159 | 2 | 157 | 4.56e-15 | 74.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0922840 | TF | MADS-M-type |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0922840 | MtrunA17_Chr4g0025531 | 71.691 | 272 | 35 | 6 | 1 | 268 | 1 | 234 | 3.92e-120 | 342 |
| Msa0922840 | MtrunA17_Chr3g0135891 | 46.541 | 159 | 52 | 5 | 106 | 260 | 16 | 145 | 1.07e-32 | 117 |
| Msa0922840 | MtrunA17_Chr3g0099421 | 35.338 | 133 | 76 | 3 | 5 | 127 | 30 | 162 | 2.95e-16 | 76.3 |
| Msa0922840 | MtrunA17_Chr1g0208561 | 29.560 | 159 | 98 | 3 | 5 | 149 | 5 | 163 | 3.08e-16 | 75.9 |
| Msa0922840 | MtrunA17_Chr8g0355091 | 34.307 | 137 | 80 | 3 | 1 | 127 | 1 | 137 | 4.18e-16 | 75.5 |
| Msa0922840 | MtrunA17_Chr3g0089141 | 29.448 | 163 | 101 | 3 | 1 | 149 | 1 | 163 | 6.90e-16 | 74.7 |
| Msa0922840 | MtrunA17_Chr1g0206701 | 35.338 | 133 | 76 | 3 | 5 | 127 | 5 | 137 | 7.26e-16 | 74.7 |
| Msa0922840 | MtrunA17_Chr1g0206991 | 34.559 | 136 | 79 | 3 | 1 | 126 | 1 | 136 | 7.69e-16 | 73.6 |
| Msa0922840 | MtrunA17_Chr1g0208581 | 32.117 | 137 | 83 | 2 | 1 | 127 | 1 | 137 | 1.46e-15 | 73.9 |
| Msa0922840 | MtrunA17_Chr1g0149391 | 45.588 | 68 | 37 | 0 | 5 | 72 | 5 | 72 | 2.16e-15 | 73.6 |
| Msa0922840 | MtrunA17_Chr3g0099411 | 42.308 | 78 | 45 | 0 | 5 | 82 | 5 | 82 | 3.33e-15 | 72.8 |
| Msa0922840 | MtrunA17_Chr3g0119901 | 42.683 | 82 | 47 | 0 | 1 | 82 | 1 | 82 | 4.27e-15 | 72.0 |
| Msa0922840 | MtrunA17_Chr1g0206721 | 42.308 | 78 | 45 | 0 | 5 | 82 | 5 | 82 | 4.30e-15 | 72.8 |
| Msa0922840 | MtrunA17_Chr5g0422421 | 27.317 | 205 | 107 | 6 | 5 | 191 | 5 | 185 | 6.35e-15 | 72.4 |
| Msa0922840 | MtrunA17_Chr2g0292791 | 42.308 | 78 | 45 | 0 | 5 | 82 | 5 | 82 | 6.35e-15 | 72.4 |
| Msa0922840 | MtrunA17_Chr1g0188671 | 40.244 | 82 | 49 | 0 | 1 | 82 | 39 | 120 | 6.69e-15 | 72.8 |
| Msa0922840 | MtrunA17_Chr2g0317481 | 40.260 | 77 | 46 | 0 | 1 | 77 | 1 | 77 | 6.94e-15 | 72.0 |
| Msa0922840 | MtrunA17_Chr2g0317451 | 40.260 | 77 | 46 | 0 | 1 | 77 | 1 | 77 | 7.44e-15 | 72.0 |
| Msa0922840 | MtrunA17_Chr3g0085241 | 43.038 | 79 | 45 | 0 | 4 | 82 | 36 | 114 | 7.58e-15 | 72.4 |
| Msa0922840 | MtrunA17_Chr5g0422941 | 27.228 | 202 | 113 | 6 | 1 | 187 | 1 | 183 | 1.62e-14 | 71.2 |
| Msa0922840 | MtrunA17_Chr4g0052061 | 35.294 | 102 | 62 | 1 | 9 | 106 | 2 | 103 | 2.90e-14 | 68.9 |
| Msa0922840 | MtrunA17_Chr5g0419601 | 40.260 | 77 | 46 | 0 | 1 | 77 | 1 | 77 | 8.89e-14 | 68.9 |
| Msa0922840 | MtrunA17_Chr8g0379021 | 27.950 | 161 | 109 | 2 | 4 | 159 | 7 | 165 | 8.90e-14 | 67.8 |
| Msa0922840 | MtrunA17_Chr2g0325971 | 40.278 | 72 | 43 | 0 | 1 | 72 | 1 | 72 | 2.11e-13 | 67.8 |
| Msa0922840 | MtrunA17_Chr4g0052081 | 38.571 | 70 | 43 | 0 | 9 | 78 | 2 | 71 | 2.91e-13 | 66.6 |
| Msa0922840 | MtrunA17_Chr1g0187361 | 37.179 | 78 | 49 | 0 | 5 | 82 | 5 | 82 | 3.08e-13 | 67.4 |
| Msa0922840 | MtrunA17_Chr2g0300421 | 35.366 | 82 | 53 | 0 | 1 | 82 | 1 | 82 | 5.18e-13 | 65.9 |
| Msa0922840 | MtrunA17_Chr2g0333981 | 25.625 | 160 | 112 | 2 | 4 | 158 | 7 | 164 | 7.72e-13 | 65.1 |
| Msa0922840 | MtrunA17_Chr3g0089151 | 38.889 | 72 | 44 | 0 | 1 | 72 | 1 | 72 | 8.07e-13 | 64.3 |
| Msa0922840 | MtrunA17_Chr2g0300441 | 28.205 | 117 | 71 | 1 | 5 | 121 | 5 | 108 | 4.13e-12 | 64.3 |
| Msa0922840 | MtrunA17_Chr3g0111841 | 44.828 | 58 | 32 | 0 | 15 | 72 | 2 | 59 | 2.54e-11 | 58.5 |
| Msa0922840 | MtrunA17_Chr8g0376821 | 33.735 | 83 | 47 | 1 | 9 | 83 | 2 | 84 | 3.48e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0922840 | AT4G36590.1 | 32.353 | 170 | 98 | 5 | 5 | 159 | 3 | 170 | 3.39e-17 | 79.0 |
| Msa0922840 | AT2G34440.1 | 31.646 | 158 | 99 | 5 | 9 | 159 | 2 | 157 | 4.64e-16 | 74.3 |
| Msa0922840 | AT1G29962.1 | 43.750 | 80 | 44 | 1 | 1 | 80 | 1 | 79 | 1.35e-15 | 73.6 |
| Msa0922840 | AT5G60440.1 | 42.308 | 78 | 44 | 1 | 5 | 82 | 3 | 79 | 5.07e-14 | 70.9 |
| Msa0922840 | AT2G24840.1 | 40.000 | 80 | 48 | 0 | 7 | 86 | 61 | 140 | 6.60e-14 | 70.1 |
| Msa0922840 | AT1G28460.1 | 29.605 | 152 | 88 | 3 | 1 | 137 | 1 | 148 | 5.56e-13 | 66.2 |
| Msa0922840 | AT1G01530.1 | 33.645 | 107 | 67 | 1 | 5 | 107 | 3 | 109 | 1.56e-12 | 66.2 |
| Msa0922840 | AT3G04100.1 | 35.714 | 84 | 51 | 1 | 5 | 88 | 10 | 90 | 1.26e-11 | 62.8 |
| Msa0922840 | AT3G66656.1 | 40.000 | 65 | 39 | 0 | 9 | 73 | 2 | 66 | 3.43e-11 | 61.2 |
| Msa0922840 | AT1G28450.1 | 38.750 | 80 | 48 | 1 | 1 | 80 | 1 | 79 | 5.95e-11 | 60.5 |
Find 34 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGTATTGTCTTCCTTTCA+TGG | 0.211509 | 6_2:-62510192 | Msa0922840:CDS |
| TTGAAGATGTTGGAAAGTTC+TGG | 0.270990 | 6_2:-62510793 | Msa0922840:CDS |
| TCTGAGTTAACAACACTTTC+AGG | 0.273550 | 6_2:-62511024 | Msa0922840:CDS |
| GCAACCATACCTTTACCTTT+TGG | 0.288774 | 6_2:+62510153 | None:intergenic |
| TTTCCTCTTGATGACCTCTT+TGG | 0.311240 | 6_2:+62511135 | None:intergenic |
| ACACAAGGAGTCAACCTTAT+TGG | 0.323352 | 6_2:-62510108 | Msa0922840:CDS |
| ATCATTTCCTCTTCTATTGA+AGG | 0.331143 | 6_2:+62510898 | None:intergenic |
| AACAGCAAAGATCATGAAAT+TGG | 0.350136 | 6_2:-62510452 | Msa0922840:CDS |
| ATCCTCCGCTTGCACCAATA+AGG | 0.357163 | 6_2:+62510094 | None:intergenic |
| TGTTGGAAAGTTCTGGATAT+TGG | 0.391346 | 6_2:-62510786 | Msa0922840:CDS |
| TTTATTTGTGACAGCAACTA+AGG | 0.402905 | 6_2:+62510702 | None:intergenic |
| ATTCTCATGCTTTCTCCAAC+GGG | 0.403336 | 6_2:-62510988 | Msa0922840:CDS |
| TTTCTTTCACTTGATCATAC+TGG | 0.408170 | 6_2:+62510734 | None:intergenic |
| TTTGTTATAGATTCAGAAGA+TGG | 0.410640 | 6_2:+62510943 | None:intergenic |
| CCTCTTGATGACCTCTTTGG+CGG | 0.444165 | 6_2:+62511138 | None:intergenic |
| GCATTTACAACGAGAAAGTC+TGG | 0.455029 | 6_2:-62511063 | Msa0922840:CDS |
| TATTCTCATGCTTTCTCCAA+CGG | 0.502164 | 6_2:-62510989 | Msa0922840:CDS |
| TGATCCAAAAGGTAAAGGTA+TGG | 0.511773 | 6_2:-62510157 | Msa0922840:CDS |
| TGAAAATCCTTCAATAGAAG+AGG | 0.547647 | 6_2:-62510905 | Msa0922840:CDS |
| GACTCCATTCAGTTCCTCGA+TGG | 0.554069 | 6_2:+62510505 | None:intergenic |
| TCTACCATCGAGGAACTGAA+TGG | 0.572587 | 6_2:-62510509 | Msa0922840:CDS |
| GTCAACCTTATTGGTGCAAG+CGG | 0.586884 | 6_2:-62510099 | Msa0922840:CDS |
| AACCTTATTGGTGCAAGCGG+AGG | 0.596051 | 6_2:-62510096 | Msa0922840:CDS |
| GAGTAAGAATGCCGCCAAAG+AGG | 0.607370 | 6_2:-62511149 | None:intergenic |
| TTTGGATGAAAAGCATGTTG+CGG | 0.629913 | 6_2:-62510833 | Msa0922840:CDS |
| TGTAGTAATTTCTACCATCG+AGG | 0.654680 | 6_2:-62510519 | Msa0922840:intron |
| CCGCCAAAGAGGTCATCAAG+AGG | 0.664394 | 6_2:-62511138 | Msa0922840:CDS |
| TGAAAGTGTTGTTAACTCAG+AGG | 0.669188 | 6_2:+62511026 | None:intergenic |
| GGAGGAGATCTTAACCCTCG+TGG | 0.672202 | 6_2:-62510655 | Msa0922840:intron |
| GCAAGCGGAGGATATGAAAG+TGG | 0.676676 | 6_2:-62510084 | Msa0922840:CDS |
| AAGCATGAGAATATCAACTG+AGG | 0.702546 | 6_2:+62510999 | None:intergenic |
| TCTCGTGATATAGAAACACA+AGG | 0.706006 | 6_2:-62510123 | Msa0922840:CDS |
| AAGATGTACACATACCACGA+GGG | 0.757349 | 6_2:+62510641 | None:intergenic |
| AAAGTCTGGAATTTACAACA+AGG | 0.757794 | 6_2:-62511049 | Msa0922840:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAAAATAATTAGACAAAA+AGG | + | chr6_2:62510639-62510658 | None:intergenic | 10.0% |
| !!! | TTTAAAATAATTAGACAAAA+AGG | + | chr6_2:62510639-62510658 | None:intergenic | 10.0% |
| !! | ATAAATAAAGTCTTGAAAAA+TGG | - | chr6_2:62510521-62510540 | Msa0922840:intron | 15.0% |
| !!! | CTAATTATTTTAAATGAATC+TGG | - | chr6_2:62510645-62510664 | Msa0922840:intron | 15.0% |
| !! | AAAAACAAAAAATTAAACAC+AGG | + | chr6_2:62510791-62510810 | None:intergenic | 15.0% |
| !! | ATAAATAAAGTCTTGAAAAA+TGG | - | chr6_2:62510521-62510540 | Msa0922840:intron | 15.0% |
| !!! | CTAATTATTTTAAATGAATC+TGG | - | chr6_2:62510645-62510664 | Msa0922840:intron | 15.0% |
| !! | AAAAACAAAAAATTAAACAC+AGG | + | chr6_2:62510791-62510810 | None:intergenic | 15.0% |
| !!! | TCATTTTGCTGTATAATATT+CGG | + | chr6_2:62510329-62510348 | None:intergenic | 20.0% |
| !!! | TGAAAAAAATGATGATCTTT+TGG | - | chr6_2:62510346-62510365 | Msa0922840:intron | 20.0% |
| !! | AAAAAATTAAACACAGGAAT+GGG | + | chr6_2:62510785-62510804 | None:intergenic | 20.0% |
| !! | AATATTAAATGGTAAAAGCT+GGG | + | chr6_2:62510885-62510904 | None:intergenic | 20.0% |
| !! | TACCATTTAATATTCACTTA+TGG | - | chr6_2:62510891-62510910 | Msa0922840:CDS | 20.0% |
| !! | ACCATTTAATATTCACTTAT+GGG | - | chr6_2:62510892-62510911 | Msa0922840:CDS | 20.0% |
| !! | TCTTCTTAATTTCTATTACT+AGG | - | chr6_2:62510933-62510952 | Msa0922840:CDS | 20.0% |
| !!! | TCATTTTGCTGTATAATATT+CGG | + | chr6_2:62510329-62510348 | None:intergenic | 20.0% |
| !!! | TGAAAAAAATGATGATCTTT+TGG | - | chr6_2:62510346-62510365 | Msa0922840:intron | 20.0% |
| !! | AAAAAATTAAACACAGGAAT+GGG | + | chr6_2:62510785-62510804 | None:intergenic | 20.0% |
| !! | AATATTAAATGGTAAAAGCT+GGG | + | chr6_2:62510885-62510904 | None:intergenic | 20.0% |
| !! | TACCATTTAATATTCACTTA+TGG | - | chr6_2:62510891-62510910 | Msa0922840:CDS | 20.0% |
| !! | ACCATTTAATATTCACTTAT+GGG | - | chr6_2:62510892-62510911 | Msa0922840:CDS | 20.0% |
| !! | TCTTCTTAATTTCTATTACT+AGG | - | chr6_2:62510933-62510952 | Msa0922840:CDS | 20.0% |
| !! | TTTGTTATAGATTCAGAAGA+TGG | + | chr6_2:62510257-62510276 | None:intergenic | 25.0% |
| ! | ACGTAAAAATTTGAAGATGT+TGG | - | chr6_2:62510394-62510413 | Msa0922840:intron | 25.0% |
| ! | AATAAAGTCTTGAAAAATGG+AGG | - | chr6_2:62510524-62510543 | Msa0922840:intron | 25.0% |
| !!! | AAATCCTACTTATGTTTTTG+AGG | - | chr6_2:62510720-62510739 | Msa0922840:CDS | 25.0% |
| ! | CAAAAAATTAAACACAGGAA+TGG | + | chr6_2:62510786-62510805 | None:intergenic | 25.0% |
| !! | TTTTGCTTGAAATATTCTAG+CGG | - | chr6_2:62510807-62510826 | Msa0922840:CDS | 25.0% |
| ! | GAATATTAAATGGTAAAAGC+TGG | + | chr6_2:62510886-62510905 | None:intergenic | 25.0% |
| ! | TCCCATAAGTGAATATTAAA+TGG | + | chr6_2:62510896-62510915 | None:intergenic | 25.0% |
| ! | AAAAAGATTGAATCCATGAA+AGG | + | chr6_2:62511021-62511040 | None:intergenic | 25.0% |
| !! | TTCAATCTTTTTGATCCAAA+AGG | - | chr6_2:62511029-62511048 | Msa0922840:CDS | 25.0% |
| !! | TTTGTTATAGATTCAGAAGA+TGG | + | chr6_2:62510257-62510276 | None:intergenic | 25.0% |
| ! | ACGTAAAAATTTGAAGATGT+TGG | - | chr6_2:62510394-62510413 | Msa0922840:intron | 25.0% |
| ! | AATAAAGTCTTGAAAAATGG+AGG | - | chr6_2:62510524-62510543 | Msa0922840:intron | 25.0% |
| !!! | AAATCCTACTTATGTTTTTG+AGG | - | chr6_2:62510720-62510739 | Msa0922840:CDS | 25.0% |
| ! | CAAAAAATTAAACACAGGAA+TGG | + | chr6_2:62510786-62510805 | None:intergenic | 25.0% |
| !! | TTTTGCTTGAAATATTCTAG+CGG | - | chr6_2:62510807-62510826 | Msa0922840:CDS | 25.0% |
| ! | GAATATTAAATGGTAAAAGC+TGG | + | chr6_2:62510886-62510905 | None:intergenic | 25.0% |
| ! | TCCCATAAGTGAATATTAAA+TGG | + | chr6_2:62510896-62510915 | None:intergenic | 25.0% |
| ! | AAAAAGATTGAATCCATGAA+AGG | + | chr6_2:62511021-62511040 | None:intergenic | 25.0% |
| !! | TTCAATCTTTTTGATCCAAA+AGG | - | chr6_2:62511029-62511048 | Msa0922840:CDS | 25.0% |
| ATCAAGAGGAAAACAAAAAG+TGG | - | chr6_2:62510073-62510092 | Msa0922840:CDS | 30.0% | |
| ! | AAAGTCTGGAATTTACAACA+AGG | - | chr6_2:62510148-62510167 | Msa0922840:CDS | 30.0% |
| ! | GATGGTTTTCCATAACAAAA+TGG | + | chr6_2:62510239-62510258 | None:intergenic | 30.0% |
| TGAAAATCCTTCAATAGAAG+AGG | - | chr6_2:62510292-62510311 | Msa0922840:intron | 30.0% | |
| ATCATTTCCTCTTCTATTGA+AGG | + | chr6_2:62510302-62510321 | None:intergenic | 30.0% | |
| TTTCTTTCACTTGATCATAC+TGG | + | chr6_2:62510466-62510485 | None:intergenic | 30.0% | |
| TTTATTTGTGACAGCAACTA+AGG | + | chr6_2:62510498-62510517 | None:intergenic | 30.0% | |
| TTGTCCTCAAAAACATAAGT+AGG | + | chr6_2:62510727-62510746 | None:intergenic | 30.0% | |
| AACAGCAAAGATCATGAAAT+TGG | - | chr6_2:62510745-62510764 | Msa0922840:CDS | 30.0% | |
| TATGTATTGTCTTCCTTTCA+TGG | - | chr6_2:62511005-62511024 | Msa0922840:CDS | 30.0% | |
| ! | CTTTTTGATCCAAAAGGTAA+AGG | - | chr6_2:62511035-62511054 | Msa0922840:CDS | 30.0% |
| ATCAAGAGGAAAACAAAAAG+TGG | - | chr6_2:62510073-62510092 | Msa0922840:CDS | 30.0% | |
| ! | AAAGTCTGGAATTTACAACA+AGG | - | chr6_2:62510148-62510167 | Msa0922840:CDS | 30.0% |
| ! | GATGGTTTTCCATAACAAAA+TGG | + | chr6_2:62510239-62510258 | None:intergenic | 30.0% |
| TGAAAATCCTTCAATAGAAG+AGG | - | chr6_2:62510292-62510311 | Msa0922840:intron | 30.0% | |
| ATCATTTCCTCTTCTATTGA+AGG | + | chr6_2:62510302-62510321 | None:intergenic | 30.0% | |
| TTTCTTTCACTTGATCATAC+TGG | + | chr6_2:62510466-62510485 | None:intergenic | 30.0% | |
| TTTATTTGTGACAGCAACTA+AGG | + | chr6_2:62510498-62510517 | None:intergenic | 30.0% | |
| TTGTCCTCAAAAACATAAGT+AGG | + | chr6_2:62510727-62510746 | None:intergenic | 30.0% | |
| AACAGCAAAGATCATGAAAT+TGG | - | chr6_2:62510745-62510764 | Msa0922840:CDS | 30.0% | |
| TATGTATTGTCTTCCTTTCA+TGG | - | chr6_2:62511005-62511024 | Msa0922840:CDS | 30.0% | |
| ! | CTTTTTGATCCAAAAGGTAA+AGG | - | chr6_2:62511035-62511054 | Msa0922840:CDS | 30.0% |
| !! | TGAAAGTGTTGTTAACTCAG+AGG | + | chr6_2:62510174-62510193 | None:intergenic | 35.0% |
| TCTGAGTTAACAACACTTTC+AGG | - | chr6_2:62510173-62510192 | Msa0922840:CDS | 35.0% | |
| AAGCATGAGAATATCAACTG+AGG | + | chr6_2:62510201-62510220 | None:intergenic | 35.0% | |
| TATTCTCATGCTTTCTCCAA+CGG | - | chr6_2:62510208-62510227 | Msa0922840:CDS | 35.0% | |
| ! | TAACAAAATGGTTTTCCCGT+TGG | + | chr6_2:62510227-62510246 | None:intergenic | 35.0% |
| ! | ACGGGAAAACCATTTTGTTA+TGG | - | chr6_2:62510227-62510246 | Msa0922840:CDS | 35.0% |
| ! | TTTGGATGAAAAGCATGTTG+CGG | - | chr6_2:62510364-62510383 | Msa0922840:intron | 35.0% |
| TTGAAGATGTTGGAAAGTTC+TGG | - | chr6_2:62510404-62510423 | Msa0922840:intron | 35.0% | |
| !! | TGTTGGAAAGTTCTGGATAT+TGG | - | chr6_2:62510411-62510430 | Msa0922840:intron | 35.0% |
| TGTAGTAATTTCTACCATCG+AGG | - | chr6_2:62510678-62510697 | Msa0922840:CDS | 35.0% | |
| TTGTAGACAAGAGATGTTGT+TGG | - | chr6_2:62510849-62510868 | Msa0922840:CDS | 35.0% | |
| TGATCCAAAAGGTAAAGGTA+TGG | - | chr6_2:62511040-62511059 | Msa0922840:CDS | 35.0% | |
| TCTCGTGATATAGAAACACA+AGG | - | chr6_2:62511074-62511093 | Msa0922840:CDS | 35.0% | |
| !! | TGAAAGTGTTGTTAACTCAG+AGG | + | chr6_2:62510174-62510193 | None:intergenic | 35.0% |
| TCTGAGTTAACAACACTTTC+AGG | - | chr6_2:62510173-62510192 | Msa0922840:CDS | 35.0% | |
| AAGCATGAGAATATCAACTG+AGG | + | chr6_2:62510201-62510220 | None:intergenic | 35.0% | |
| TATTCTCATGCTTTCTCCAA+CGG | - | chr6_2:62510208-62510227 | Msa0922840:CDS | 35.0% | |
| ! | TAACAAAATGGTTTTCCCGT+TGG | + | chr6_2:62510227-62510246 | None:intergenic | 35.0% |
| ! | ACGGGAAAACCATTTTGTTA+TGG | - | chr6_2:62510227-62510246 | Msa0922840:CDS | 35.0% |
| ! | TTTGGATGAAAAGCATGTTG+CGG | - | chr6_2:62510364-62510383 | Msa0922840:intron | 35.0% |
| TTGAAGATGTTGGAAAGTTC+TGG | - | chr6_2:62510404-62510423 | Msa0922840:intron | 35.0% | |
| !! | TGTTGGAAAGTTCTGGATAT+TGG | - | chr6_2:62510411-62510430 | Msa0922840:intron | 35.0% |
| TGTAGTAATTTCTACCATCG+AGG | - | chr6_2:62510678-62510697 | Msa0922840:CDS | 35.0% | |
| TTGTAGACAAGAGATGTTGT+TGG | - | chr6_2:62510849-62510868 | Msa0922840:CDS | 35.0% | |
| TGATCCAAAAGGTAAAGGTA+TGG | - | chr6_2:62511040-62511059 | Msa0922840:CDS | 35.0% | |
| TCTCGTGATATAGAAACACA+AGG | - | chr6_2:62511074-62511093 | Msa0922840:CDS | 35.0% | |
| ! | TTTCCTCTTGATGACCTCTT+TGG | + | chr6_2:62510065-62510084 | None:intergenic | 40.0% |
| GCATTTACAACGAGAAAGTC+TGG | - | chr6_2:62510134-62510153 | Msa0922840:CDS | 40.0% | |
| ATTCTCATGCTTTCTCCAAC+GGG | - | chr6_2:62510209-62510228 | Msa0922840:CDS | 40.0% | |
| AAGATGTACACATACCACGA+GGG | + | chr6_2:62510559-62510578 | None:intergenic | 40.0% | |
| ! | GCAACCATACCTTTACCTTT+TGG | + | chr6_2:62511047-62511066 | None:intergenic | 40.0% |
| ACACAAGGAGTCAACCTTAT+TGG | - | chr6_2:62511089-62511108 | Msa0922840:CDS | 40.0% | |
| ! | TTTCCTCTTGATGACCTCTT+TGG | + | chr6_2:62510065-62510084 | None:intergenic | 40.0% |
| GCATTTACAACGAGAAAGTC+TGG | - | chr6_2:62510134-62510153 | Msa0922840:CDS | 40.0% | |
| ATTCTCATGCTTTCTCCAAC+GGG | - | chr6_2:62510209-62510228 | Msa0922840:CDS | 40.0% | |
| AAGATGTACACATACCACGA+GGG | + | chr6_2:62510559-62510578 | None:intergenic | 40.0% | |
| ! | GCAACCATACCTTTACCTTT+TGG | + | chr6_2:62511047-62511066 | None:intergenic | 40.0% |
| ACACAAGGAGTCAACCTTAT+TGG | - | chr6_2:62511089-62511108 | Msa0922840:CDS | 40.0% | |
| GAAGATGTACACATACCACG+AGG | + | chr6_2:62510560-62510579 | None:intergenic | 45.0% | |
| TCTACCATCGAGGAACTGAA+TGG | - | chr6_2:62510688-62510707 | Msa0922840:CDS | 45.0% | |
| GTCAACCTTATTGGTGCAAG+CGG | - | chr6_2:62511098-62511117 | Msa0922840:CDS | 45.0% | |
| GAAGATGTACACATACCACG+AGG | + | chr6_2:62510560-62510579 | None:intergenic | 45.0% | |
| TCTACCATCGAGGAACTGAA+TGG | - | chr6_2:62510688-62510707 | Msa0922840:CDS | 45.0% | |
| GTCAACCTTATTGGTGCAAG+CGG | - | chr6_2:62511098-62511117 | Msa0922840:CDS | 45.0% | |
| ! | CCTCTTGATGACCTCTTTGG+CGG | + | chr6_2:62510062-62510081 | None:intergenic | 50.0% |
| GACTCCATTCAGTTCCTCGA+TGG | + | chr6_2:62510695-62510714 | None:intergenic | 50.0% | |
| AACCTTATTGGTGCAAGCGG+AGG | - | chr6_2:62511101-62511120 | Msa0922840:CDS | 50.0% | |
| ATCCTCCGCTTGCACCAATA+AGG | + | chr6_2:62511106-62511125 | None:intergenic | 50.0% | |
| GCAAGCGGAGGATATGAAAG+TGG | - | chr6_2:62511113-62511132 | Msa0922840:CDS | 50.0% | |
| ! | CCTCTTGATGACCTCTTTGG+CGG | + | chr6_2:62510062-62510081 | None:intergenic | 50.0% |
| GACTCCATTCAGTTCCTCGA+TGG | + | chr6_2:62510695-62510714 | None:intergenic | 50.0% | |
| AACCTTATTGGTGCAAGCGG+AGG | - | chr6_2:62511101-62511120 | Msa0922840:CDS | 50.0% | |
| ATCCTCCGCTTGCACCAATA+AGG | + | chr6_2:62511106-62511125 | None:intergenic | 50.0% | |
| GCAAGCGGAGGATATGAAAG+TGG | - | chr6_2:62511113-62511132 | Msa0922840:CDS | 50.0% | |
| CCGCCAAAGAGGTCATCAAG+AGG | - | chr6_2:62510059-62510078 | Msa0922840:CDS | 55.0% | |
| GGAGGAGATCTTAACCCTCG+TGG | - | chr6_2:62510542-62510561 | Msa0922840:intron | 55.0% | |
| CCGCCAAAGAGGTCATCAAG+AGG | - | chr6_2:62510059-62510078 | Msa0922840:CDS | 55.0% | |
| GGAGGAGATCTTAACCCTCG+TGG | - | chr6_2:62510542-62510561 | Msa0922840:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 62510056 | 62511163 | 62510056 | ID=Msa0922840;Name=Msa0922840 |
| chr6_2 | mRNA | 62510056 | 62511163 | 62510056 | ID=Msa0922840-mRNA-1;Parent=Msa0922840;Name=Msa0922840-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|1|1|3|0|268 |
| chr6_2 | exon | 62510656 | 62511163 | 62510656 | ID=Msa0922840-mRNA-1:exon:9686;Parent=Msa0922840-mRNA-1 |
| chr6_2 | exon | 62510447 | 62510536 | 62510447 | ID=Msa0922840-mRNA-1:exon:9685;Parent=Msa0922840-mRNA-1 |
| chr6_2 | exon | 62510056 | 62510264 | 62510056 | ID=Msa0922840-mRNA-1:exon:9684;Parent=Msa0922840-mRNA-1 |
| chr6_2 | CDS | 62510656 | 62511163 | 62510656 | ID=Msa0922840-mRNA-1:cds;Parent=Msa0922840-mRNA-1 |
| chr6_2 | CDS | 62510447 | 62510536 | 62510447 | ID=Msa0922840-mRNA-1:cds;Parent=Msa0922840-mRNA-1 |
| chr6_2 | CDS | 62510056 | 62510264 | 62510056 | ID=Msa0922840-mRNA-1:cds;Parent=Msa0922840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
