Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0922900 | XP_013455733.1 | 71.324 | 272 | 36 | 6 | 1 | 268 | 1 | 234 | 6.37e-115 | 340 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0922900 | sp|O64703|AGL29_ARATH | 31.646 | 158 | 99 | 5 | 9 | 159 | 2 | 157 | 3.83e-15 | 74.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0922900 | TF | MADS-M-type |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0922900 | MtrunA17_Chr4g0025531 | 71.324 | 272 | 36 | 6 | 1 | 268 | 1 | 234 | 5.86e-119 | 340 |
| Msa0922900 | MtrunA17_Chr3g0135891 | 46.541 | 159 | 52 | 5 | 106 | 260 | 16 | 145 | 2.07e-32 | 116 |
| Msa0922900 | MtrunA17_Chr3g0099421 | 35.338 | 133 | 76 | 3 | 5 | 127 | 30 | 162 | 2.86e-16 | 76.3 |
| Msa0922900 | MtrunA17_Chr1g0208561 | 29.560 | 159 | 98 | 3 | 5 | 149 | 5 | 163 | 3.45e-16 | 75.5 |
| Msa0922900 | MtrunA17_Chr8g0355091 | 34.307 | 137 | 80 | 3 | 1 | 127 | 1 | 137 | 3.98e-16 | 75.5 |
| Msa0922900 | MtrunA17_Chr3g0089141 | 29.448 | 163 | 101 | 3 | 1 | 149 | 1 | 163 | 6.97e-16 | 74.7 |
| Msa0922900 | MtrunA17_Chr1g0206991 | 34.559 | 136 | 79 | 3 | 1 | 126 | 1 | 136 | 7.85e-16 | 73.6 |
| Msa0922900 | MtrunA17_Chr1g0206701 | 35.338 | 133 | 76 | 3 | 5 | 127 | 5 | 137 | 7.94e-16 | 74.7 |
| Msa0922900 | MtrunA17_Chr1g0208581 | 32.117 | 137 | 83 | 2 | 1 | 127 | 1 | 137 | 1.39e-15 | 73.9 |
| Msa0922900 | MtrunA17_Chr1g0149391 | 45.588 | 68 | 37 | 0 | 5 | 72 | 5 | 72 | 2.08e-15 | 73.6 |
| Msa0922900 | MtrunA17_Chr3g0099411 | 42.308 | 78 | 45 | 0 | 5 | 82 | 5 | 82 | 3.40e-15 | 72.8 |
| Msa0922900 | MtrunA17_Chr1g0206721 | 42.308 | 78 | 45 | 0 | 5 | 82 | 5 | 82 | 4.52e-15 | 72.8 |
| Msa0922900 | MtrunA17_Chr3g0119901 | 42.683 | 82 | 47 | 0 | 1 | 82 | 1 | 82 | 4.91e-15 | 72.0 |
| Msa0922900 | MtrunA17_Chr2g0292791 | 42.308 | 78 | 45 | 0 | 5 | 82 | 5 | 82 | 6.22e-15 | 72.4 |
| Msa0922900 | MtrunA17_Chr5g0422421 | 27.317 | 205 | 107 | 6 | 5 | 191 | 5 | 185 | 6.74e-15 | 72.0 |
| Msa0922900 | MtrunA17_Chr1g0188671 | 40.244 | 82 | 49 | 0 | 1 | 82 | 39 | 120 | 6.89e-15 | 72.8 |
| Msa0922900 | MtrunA17_Chr3g0085241 | 43.038 | 79 | 45 | 0 | 4 | 82 | 36 | 114 | 7.21e-15 | 72.4 |
| Msa0922900 | MtrunA17_Chr2g0317451 | 26.590 | 173 | 117 | 3 | 1 | 163 | 1 | 173 | 7.59e-15 | 72.0 |
| Msa0922900 | MtrunA17_Chr2g0317481 | 40.260 | 77 | 46 | 0 | 1 | 77 | 1 | 77 | 7.82e-15 | 72.0 |
| Msa0922900 | MtrunA17_Chr5g0422941 | 27.228 | 202 | 113 | 6 | 1 | 187 | 1 | 183 | 1.57e-14 | 71.2 |
| Msa0922900 | MtrunA17_Chr4g0052061 | 35.294 | 102 | 62 | 1 | 9 | 106 | 2 | 103 | 3.18e-14 | 68.6 |
| Msa0922900 | MtrunA17_Chr8g0379021 | 27.950 | 161 | 109 | 2 | 4 | 159 | 7 | 165 | 8.64e-14 | 67.8 |
| Msa0922900 | MtrunA17_Chr5g0419601 | 41.667 | 72 | 42 | 0 | 1 | 72 | 1 | 72 | 9.15e-14 | 68.9 |
| Msa0922900 | MtrunA17_Chr2g0325971 | 40.278 | 72 | 43 | 0 | 1 | 72 | 1 | 72 | 1.97e-13 | 67.8 |
| Msa0922900 | MtrunA17_Chr4g0052081 | 38.571 | 70 | 43 | 0 | 9 | 78 | 2 | 71 | 3.16e-13 | 66.2 |
| Msa0922900 | MtrunA17_Chr1g0187361 | 37.179 | 78 | 49 | 0 | 5 | 82 | 5 | 82 | 3.33e-13 | 67.4 |
| Msa0922900 | MtrunA17_Chr2g0300421 | 35.366 | 82 | 53 | 0 | 1 | 82 | 1 | 82 | 5.50e-13 | 65.5 |
| Msa0922900 | MtrunA17_Chr3g0089151 | 38.889 | 72 | 44 | 0 | 1 | 72 | 1 | 72 | 7.99e-13 | 64.3 |
| Msa0922900 | MtrunA17_Chr2g0333981 | 25.625 | 160 | 112 | 2 | 4 | 158 | 7 | 164 | 8.12e-13 | 65.1 |
| Msa0922900 | MtrunA17_Chr2g0300441 | 27.132 | 129 | 81 | 1 | 5 | 133 | 5 | 120 | 3.67e-12 | 64.3 |
| Msa0922900 | MtrunA17_Chr3g0111841 | 44.828 | 58 | 32 | 0 | 15 | 72 | 2 | 59 | 2.62e-11 | 58.2 |
| Msa0922900 | MtrunA17_Chr8g0376821 | 33.735 | 83 | 47 | 1 | 9 | 83 | 2 | 84 | 3.59e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0922900 | AT4G36590.1 | 32.353 | 170 | 98 | 5 | 5 | 159 | 3 | 170 | 3.00e-17 | 79.3 |
| Msa0922900 | AT2G34440.1 | 31.646 | 158 | 99 | 5 | 9 | 159 | 2 | 157 | 3.90e-16 | 74.7 |
| Msa0922900 | AT1G29962.1 | 43.750 | 80 | 44 | 1 | 1 | 80 | 1 | 79 | 1.47e-15 | 73.2 |
| Msa0922900 | AT5G60440.1 | 42.308 | 78 | 44 | 1 | 5 | 82 | 3 | 79 | 4.69e-14 | 71.2 |
| Msa0922900 | AT2G24840.1 | 40.000 | 80 | 48 | 0 | 7 | 86 | 61 | 140 | 7.14e-14 | 70.1 |
| Msa0922900 | AT1G28460.1 | 29.605 | 152 | 88 | 3 | 1 | 137 | 1 | 148 | 5.90e-13 | 66.2 |
| Msa0922900 | AT1G01530.1 | 33.645 | 107 | 67 | 1 | 5 | 107 | 3 | 109 | 1.59e-12 | 66.2 |
| Msa0922900 | AT3G04100.1 | 35.714 | 84 | 51 | 1 | 5 | 88 | 10 | 90 | 1.33e-11 | 62.8 |
| Msa0922900 | AT3G66656.1 | 40.000 | 65 | 39 | 0 | 9 | 73 | 2 | 66 | 3.57e-11 | 61.2 |
| Msa0922900 | AT1G28450.1 | 38.750 | 80 | 48 | 1 | 1 | 80 | 1 | 79 | 6.38e-11 | 60.5 |
Find 34 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGTATTGTCTTCCTTTCA+TGG | 0.211509 | 6_2:-62616663 | Msa0922900:CDS |
| TTGAAGATGTTGGAAAGTTC+TGG | 0.270990 | 6_2:-62617264 | Msa0922900:CDS |
| TCTGAGTTAACAACACTTTC+AGG | 0.273550 | 6_2:-62617495 | Msa0922900:CDS |
| AACAGCAAATATCATGAAAT+TGG | 0.280810 | 6_2:-62616923 | Msa0922900:CDS |
| GCAACCATACCTTTACCTTT+TGG | 0.288774 | 6_2:+62616624 | None:intergenic |
| TTTCCTCTTGATGACCTCTT+TGG | 0.311240 | 6_2:+62617606 | None:intergenic |
| ACACAAGGAGTCAACCTTAT+TGG | 0.323352 | 6_2:-62616579 | Msa0922900:CDS |
| ATCATTTCCTCTTCTATTGA+AGG | 0.331143 | 6_2:+62617369 | None:intergenic |
| ATCCTCCGCTTGCACCAATA+AGG | 0.357163 | 6_2:+62616565 | None:intergenic |
| TGTTGGAAAGTTCTGGATAT+TGG | 0.391346 | 6_2:-62617257 | Msa0922900:CDS |
| TTTATTTGTGACAGCAACTA+AGG | 0.402905 | 6_2:+62617173 | None:intergenic |
| ATTCTCATGCTTTCTCCAAC+GGG | 0.403336 | 6_2:-62617459 | Msa0922900:CDS |
| TTTCTTTCACTTGATCATAC+TGG | 0.408170 | 6_2:+62617205 | None:intergenic |
| TTTGTTATAGATTCAGAAGA+TGG | 0.410640 | 6_2:+62617414 | None:intergenic |
| CCTCTTGATGACCTCTTTGG+CGG | 0.444165 | 6_2:+62617609 | None:intergenic |
| GCATTTACAACGAGAAAGTC+TGG | 0.455029 | 6_2:-62617534 | Msa0922900:CDS |
| TATTCTCATGCTTTCTCCAA+CGG | 0.502164 | 6_2:-62617460 | Msa0922900:CDS |
| TGATCCAAAAGGTAAAGGTA+TGG | 0.511773 | 6_2:-62616628 | Msa0922900:CDS |
| TGAAAATCCTTCAATAGAAG+AGG | 0.547647 | 6_2:-62617376 | Msa0922900:CDS |
| GACTCCATTCAGTTCCTCGA+TGG | 0.554069 | 6_2:+62616976 | None:intergenic |
| TCTACCATCGAGGAACTGAA+TGG | 0.572587 | 6_2:-62616980 | Msa0922900:CDS |
| GTCAACCTTATTGGTGCAAG+CGG | 0.586884 | 6_2:-62616570 | Msa0922900:CDS |
| AACCTTATTGGTGCAAGCGG+AGG | 0.596051 | 6_2:-62616567 | Msa0922900:CDS |
| GAGTAAGAATGCCGCCAAAG+AGG | 0.607370 | 6_2:-62617620 | None:intergenic |
| TTTGGATGAAAAGCATGTTG+CGG | 0.629913 | 6_2:-62617304 | Msa0922900:CDS |
| TGTAGTAATTTCTACCATCG+AGG | 0.654680 | 6_2:-62616990 | Msa0922900:intron |
| CCGCCAAAGAGGTCATCAAG+AGG | 0.664394 | 6_2:-62617609 | Msa0922900:CDS |
| TGAAAGTGTTGTTAACTCAG+AGG | 0.669188 | 6_2:+62617497 | None:intergenic |
| GGAGGAGATCTTAACCCTCG+TGG | 0.672202 | 6_2:-62617126 | Msa0922900:intron |
| GCAAGCGGAGGATATGAAAG+TGG | 0.676676 | 6_2:-62616555 | Msa0922900:CDS |
| AAGCATGAGAATATCAACTG+AGG | 0.702546 | 6_2:+62617470 | None:intergenic |
| TCTCGTGATATAGAAACACA+AGG | 0.706006 | 6_2:-62616594 | Msa0922900:CDS |
| AAGATGTACACATACCACGA+GGG | 0.757349 | 6_2:+62617112 | None:intergenic |
| AAAGTCTGGAATTTACAACA+AGG | 0.757794 | 6_2:-62617520 | Msa0922900:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAAAATAATTAGACAAAA+AGG | + | chr6_2:62617110-62617129 | None:intergenic | 10.0% |
| !!! | TTTAAAATAATTAGACAAAA+AGG | + | chr6_2:62617110-62617129 | None:intergenic | 10.0% |
| !! | ATAAATAAAGTCTTGAAAAA+TGG | - | chr6_2:62616992-62617011 | Msa0922900:intron | 15.0% |
| !!! | CTAATTATTTTAAATGAATC+TGG | - | chr6_2:62617116-62617135 | Msa0922900:intron | 15.0% |
| !! | AAAAACAAAAAATTAAACAC+AGG | + | chr6_2:62617262-62617281 | None:intergenic | 15.0% |
| !! | ATAAATAAAGTCTTGAAAAA+TGG | - | chr6_2:62616992-62617011 | Msa0922900:intron | 15.0% |
| !!! | CTAATTATTTTAAATGAATC+TGG | - | chr6_2:62617116-62617135 | Msa0922900:intron | 15.0% |
| !! | AAAAACAAAAAATTAAACAC+AGG | + | chr6_2:62617262-62617281 | None:intergenic | 15.0% |
| !!! | TCATTTTGCTGTATAATATT+CGG | + | chr6_2:62616800-62616819 | None:intergenic | 20.0% |
| !!! | TGAAAAAAATGATGATCTTT+TGG | - | chr6_2:62616817-62616836 | Msa0922900:intron | 20.0% |
| !! | AAAAAATTAAACACAGGAAT+GGG | + | chr6_2:62617256-62617275 | None:intergenic | 20.0% |
| !! | AATATTAAATGGTAAAAGCT+GGG | + | chr6_2:62617356-62617375 | None:intergenic | 20.0% |
| !! | TACCATTTAATATTCACTTA+TGG | - | chr6_2:62617362-62617381 | Msa0922900:CDS | 20.0% |
| !! | ACCATTTAATATTCACTTAT+GGG | - | chr6_2:62617363-62617382 | Msa0922900:CDS | 20.0% |
| !! | TCTTCTTAATTTCTATTACT+AGG | - | chr6_2:62617404-62617423 | Msa0922900:CDS | 20.0% |
| !!! | TCATTTTGCTGTATAATATT+CGG | + | chr6_2:62616800-62616819 | None:intergenic | 20.0% |
| !!! | TGAAAAAAATGATGATCTTT+TGG | - | chr6_2:62616817-62616836 | Msa0922900:intron | 20.0% |
| !! | AAAAAATTAAACACAGGAAT+GGG | + | chr6_2:62617256-62617275 | None:intergenic | 20.0% |
| !! | AATATTAAATGGTAAAAGCT+GGG | + | chr6_2:62617356-62617375 | None:intergenic | 20.0% |
| !! | TACCATTTAATATTCACTTA+TGG | - | chr6_2:62617362-62617381 | Msa0922900:CDS | 20.0% |
| !! | ACCATTTAATATTCACTTAT+GGG | - | chr6_2:62617363-62617382 | Msa0922900:CDS | 20.0% |
| !! | TCTTCTTAATTTCTATTACT+AGG | - | chr6_2:62617404-62617423 | Msa0922900:CDS | 20.0% |
| !! | TTTGTTATAGATTCAGAAGA+TGG | + | chr6_2:62616728-62616747 | None:intergenic | 25.0% |
| ! | ACGTAAAAATTTGAAGATGT+TGG | - | chr6_2:62616865-62616884 | Msa0922900:intron | 25.0% |
| ! | AATAAAGTCTTGAAAAATGG+AGG | - | chr6_2:62616995-62617014 | Msa0922900:intron | 25.0% |
| ! | AACAGCAAATATCATGAAAT+TGG | - | chr6_2:62617216-62617235 | Msa0922900:CDS | 25.0% |
| ! | CAAAAAATTAAACACAGGAA+TGG | + | chr6_2:62617257-62617276 | None:intergenic | 25.0% |
| !! | TTTTGCTTGAAATATTCTAG+CGG | - | chr6_2:62617278-62617297 | Msa0922900:CDS | 25.0% |
| ! | GAATATTAAATGGTAAAAGC+TGG | + | chr6_2:62617357-62617376 | None:intergenic | 25.0% |
| ! | TCCCATAAGTGAATATTAAA+TGG | + | chr6_2:62617367-62617386 | None:intergenic | 25.0% |
| ! | AAAAAGATTGAATCCATGAA+AGG | + | chr6_2:62617492-62617511 | None:intergenic | 25.0% |
| !! | TTCAATCTTTTTGATCCAAA+AGG | - | chr6_2:62617500-62617519 | Msa0922900:CDS | 25.0% |
| !! | TTTGTTATAGATTCAGAAGA+TGG | + | chr6_2:62616728-62616747 | None:intergenic | 25.0% |
| ! | ACGTAAAAATTTGAAGATGT+TGG | - | chr6_2:62616865-62616884 | Msa0922900:intron | 25.0% |
| ! | AATAAAGTCTTGAAAAATGG+AGG | - | chr6_2:62616995-62617014 | Msa0922900:intron | 25.0% |
| ! | AACAGCAAATATCATGAAAT+TGG | - | chr6_2:62617216-62617235 | Msa0922900:CDS | 25.0% |
| ! | CAAAAAATTAAACACAGGAA+TGG | + | chr6_2:62617257-62617276 | None:intergenic | 25.0% |
| !! | TTTTGCTTGAAATATTCTAG+CGG | - | chr6_2:62617278-62617297 | Msa0922900:CDS | 25.0% |
| ! | GAATATTAAATGGTAAAAGC+TGG | + | chr6_2:62617357-62617376 | None:intergenic | 25.0% |
| ! | TCCCATAAGTGAATATTAAA+TGG | + | chr6_2:62617367-62617386 | None:intergenic | 25.0% |
| ! | AAAAAGATTGAATCCATGAA+AGG | + | chr6_2:62617492-62617511 | None:intergenic | 25.0% |
| !! | TTCAATCTTTTTGATCCAAA+AGG | - | chr6_2:62617500-62617519 | Msa0922900:CDS | 25.0% |
| ATCAAGAGGAAAACAAAAAG+TGG | - | chr6_2:62616544-62616563 | Msa0922900:CDS | 30.0% | |
| ! | AAAGTCTGGAATTTACAACA+AGG | - | chr6_2:62616619-62616638 | Msa0922900:CDS | 30.0% |
| ! | GATGGTTTTCCATAACAAAA+TGG | + | chr6_2:62616710-62616729 | None:intergenic | 30.0% |
| TGAAAATCCTTCAATAGAAG+AGG | - | chr6_2:62616763-62616782 | Msa0922900:intron | 30.0% | |
| ATCATTTCCTCTTCTATTGA+AGG | + | chr6_2:62616773-62616792 | None:intergenic | 30.0% | |
| TTTCTTTCACTTGATCATAC+TGG | + | chr6_2:62616937-62616956 | None:intergenic | 30.0% | |
| TTTATTTGTGACAGCAACTA+AGG | + | chr6_2:62616969-62616988 | None:intergenic | 30.0% | |
| !! | AAATCCTGCTTATGTTTTTG+AGG | - | chr6_2:62617191-62617210 | Msa0922900:CDS | 30.0% |
| TATGTATTGTCTTCCTTTCA+TGG | - | chr6_2:62617476-62617495 | Msa0922900:CDS | 30.0% | |
| ! | CTTTTTGATCCAAAAGGTAA+AGG | - | chr6_2:62617506-62617525 | Msa0922900:CDS | 30.0% |
| ATCAAGAGGAAAACAAAAAG+TGG | - | chr6_2:62616544-62616563 | Msa0922900:CDS | 30.0% | |
| ! | AAAGTCTGGAATTTACAACA+AGG | - | chr6_2:62616619-62616638 | Msa0922900:CDS | 30.0% |
| ! | GATGGTTTTCCATAACAAAA+TGG | + | chr6_2:62616710-62616729 | None:intergenic | 30.0% |
| TGAAAATCCTTCAATAGAAG+AGG | - | chr6_2:62616763-62616782 | Msa0922900:intron | 30.0% | |
| ATCATTTCCTCTTCTATTGA+AGG | + | chr6_2:62616773-62616792 | None:intergenic | 30.0% | |
| TTTCTTTCACTTGATCATAC+TGG | + | chr6_2:62616937-62616956 | None:intergenic | 30.0% | |
| TTTATTTGTGACAGCAACTA+AGG | + | chr6_2:62616969-62616988 | None:intergenic | 30.0% | |
| !! | AAATCCTGCTTATGTTTTTG+AGG | - | chr6_2:62617191-62617210 | Msa0922900:CDS | 30.0% |
| TATGTATTGTCTTCCTTTCA+TGG | - | chr6_2:62617476-62617495 | Msa0922900:CDS | 30.0% | |
| ! | CTTTTTGATCCAAAAGGTAA+AGG | - | chr6_2:62617506-62617525 | Msa0922900:CDS | 30.0% |
| !! | TGAAAGTGTTGTTAACTCAG+AGG | + | chr6_2:62616645-62616664 | None:intergenic | 35.0% |
| TCTGAGTTAACAACACTTTC+AGG | - | chr6_2:62616644-62616663 | Msa0922900:CDS | 35.0% | |
| AAGCATGAGAATATCAACTG+AGG | + | chr6_2:62616672-62616691 | None:intergenic | 35.0% | |
| TATTCTCATGCTTTCTCCAA+CGG | - | chr6_2:62616679-62616698 | Msa0922900:CDS | 35.0% | |
| ! | TAACAAAATGGTTTTCCCGT+TGG | + | chr6_2:62616698-62616717 | None:intergenic | 35.0% |
| ! | ACGGGAAAACCATTTTGTTA+TGG | - | chr6_2:62616698-62616717 | Msa0922900:CDS | 35.0% |
| ! | TTTGGATGAAAAGCATGTTG+CGG | - | chr6_2:62616835-62616854 | Msa0922900:intron | 35.0% |
| TTGAAGATGTTGGAAAGTTC+TGG | - | chr6_2:62616875-62616894 | Msa0922900:intron | 35.0% | |
| !! | TGTTGGAAAGTTCTGGATAT+TGG | - | chr6_2:62616882-62616901 | Msa0922900:intron | 35.0% |
| TGTAGTAATTTCTACCATCG+AGG | - | chr6_2:62617149-62617168 | Msa0922900:CDS | 35.0% | |
| TTGTCCTCAAAAACATAAGC+AGG | + | chr6_2:62617198-62617217 | None:intergenic | 35.0% | |
| TTGTAGACAAGAGATGTTGT+TGG | - | chr6_2:62617320-62617339 | Msa0922900:CDS | 35.0% | |
| TGATCCAAAAGGTAAAGGTA+TGG | - | chr6_2:62617511-62617530 | Msa0922900:CDS | 35.0% | |
| TCTCGTGATATAGAAACACA+AGG | - | chr6_2:62617545-62617564 | Msa0922900:CDS | 35.0% | |
| !! | TGAAAGTGTTGTTAACTCAG+AGG | + | chr6_2:62616645-62616664 | None:intergenic | 35.0% |
| TCTGAGTTAACAACACTTTC+AGG | - | chr6_2:62616644-62616663 | Msa0922900:CDS | 35.0% | |
| AAGCATGAGAATATCAACTG+AGG | + | chr6_2:62616672-62616691 | None:intergenic | 35.0% | |
| TATTCTCATGCTTTCTCCAA+CGG | - | chr6_2:62616679-62616698 | Msa0922900:CDS | 35.0% | |
| ! | TAACAAAATGGTTTTCCCGT+TGG | + | chr6_2:62616698-62616717 | None:intergenic | 35.0% |
| ! | ACGGGAAAACCATTTTGTTA+TGG | - | chr6_2:62616698-62616717 | Msa0922900:CDS | 35.0% |
| ! | TTTGGATGAAAAGCATGTTG+CGG | - | chr6_2:62616835-62616854 | Msa0922900:intron | 35.0% |
| TTGAAGATGTTGGAAAGTTC+TGG | - | chr6_2:62616875-62616894 | Msa0922900:intron | 35.0% | |
| !! | TGTTGGAAAGTTCTGGATAT+TGG | - | chr6_2:62616882-62616901 | Msa0922900:intron | 35.0% |
| TGTAGTAATTTCTACCATCG+AGG | - | chr6_2:62617149-62617168 | Msa0922900:CDS | 35.0% | |
| TTGTCCTCAAAAACATAAGC+AGG | + | chr6_2:62617198-62617217 | None:intergenic | 35.0% | |
| TTGTAGACAAGAGATGTTGT+TGG | - | chr6_2:62617320-62617339 | Msa0922900:CDS | 35.0% | |
| TGATCCAAAAGGTAAAGGTA+TGG | - | chr6_2:62617511-62617530 | Msa0922900:CDS | 35.0% | |
| TCTCGTGATATAGAAACACA+AGG | - | chr6_2:62617545-62617564 | Msa0922900:CDS | 35.0% | |
| ! | TTTCCTCTTGATGACCTCTT+TGG | + | chr6_2:62616536-62616555 | None:intergenic | 40.0% |
| GCATTTACAACGAGAAAGTC+TGG | - | chr6_2:62616605-62616624 | Msa0922900:CDS | 40.0% | |
| ATTCTCATGCTTTCTCCAAC+GGG | - | chr6_2:62616680-62616699 | Msa0922900:CDS | 40.0% | |
| AAGATGTACACATACCACGA+GGG | + | chr6_2:62617030-62617049 | None:intergenic | 40.0% | |
| ! | GCAACCATACCTTTACCTTT+TGG | + | chr6_2:62617518-62617537 | None:intergenic | 40.0% |
| ACACAAGGAGTCAACCTTAT+TGG | - | chr6_2:62617560-62617579 | Msa0922900:CDS | 40.0% | |
| ! | TTTCCTCTTGATGACCTCTT+TGG | + | chr6_2:62616536-62616555 | None:intergenic | 40.0% |
| GCATTTACAACGAGAAAGTC+TGG | - | chr6_2:62616605-62616624 | Msa0922900:CDS | 40.0% | |
| ATTCTCATGCTTTCTCCAAC+GGG | - | chr6_2:62616680-62616699 | Msa0922900:CDS | 40.0% | |
| AAGATGTACACATACCACGA+GGG | + | chr6_2:62617030-62617049 | None:intergenic | 40.0% | |
| ! | GCAACCATACCTTTACCTTT+TGG | + | chr6_2:62617518-62617537 | None:intergenic | 40.0% |
| ACACAAGGAGTCAACCTTAT+TGG | - | chr6_2:62617560-62617579 | Msa0922900:CDS | 40.0% | |
| GAAGATGTACACATACCACG+AGG | + | chr6_2:62617031-62617050 | None:intergenic | 45.0% | |
| TCTACCATCGAGGAACTGAA+TGG | - | chr6_2:62617159-62617178 | Msa0922900:CDS | 45.0% | |
| GTCAACCTTATTGGTGCAAG+CGG | - | chr6_2:62617569-62617588 | Msa0922900:CDS | 45.0% | |
| GAAGATGTACACATACCACG+AGG | + | chr6_2:62617031-62617050 | None:intergenic | 45.0% | |
| TCTACCATCGAGGAACTGAA+TGG | - | chr6_2:62617159-62617178 | Msa0922900:CDS | 45.0% | |
| GTCAACCTTATTGGTGCAAG+CGG | - | chr6_2:62617569-62617588 | Msa0922900:CDS | 45.0% | |
| ! | CCTCTTGATGACCTCTTTGG+CGG | + | chr6_2:62616533-62616552 | None:intergenic | 50.0% |
| GACTCCATTCAGTTCCTCGA+TGG | + | chr6_2:62617166-62617185 | None:intergenic | 50.0% | |
| AACCTTATTGGTGCAAGCGG+AGG | - | chr6_2:62617572-62617591 | Msa0922900:CDS | 50.0% | |
| ATCCTCCGCTTGCACCAATA+AGG | + | chr6_2:62617577-62617596 | None:intergenic | 50.0% | |
| GCAAGCGGAGGATATGAAAG+TGG | - | chr6_2:62617584-62617603 | Msa0922900:CDS | 50.0% | |
| ! | CCTCTTGATGACCTCTTTGG+CGG | + | chr6_2:62616533-62616552 | None:intergenic | 50.0% |
| GACTCCATTCAGTTCCTCGA+TGG | + | chr6_2:62617166-62617185 | None:intergenic | 50.0% | |
| AACCTTATTGGTGCAAGCGG+AGG | - | chr6_2:62617572-62617591 | Msa0922900:CDS | 50.0% | |
| ATCCTCCGCTTGCACCAATA+AGG | + | chr6_2:62617577-62617596 | None:intergenic | 50.0% | |
| GCAAGCGGAGGATATGAAAG+TGG | - | chr6_2:62617584-62617603 | Msa0922900:CDS | 50.0% | |
| CCGCCAAAGAGGTCATCAAG+AGG | - | chr6_2:62616530-62616549 | Msa0922900:CDS | 55.0% | |
| GGAGGAGATCTTAACCCTCG+TGG | - | chr6_2:62617013-62617032 | Msa0922900:intron | 55.0% | |
| CCGCCAAAGAGGTCATCAAG+AGG | - | chr6_2:62616530-62616549 | Msa0922900:CDS | 55.0% | |
| GGAGGAGATCTTAACCCTCG+TGG | - | chr6_2:62617013-62617032 | Msa0922900:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 62616527 | 62617634 | 62616527 | ID=Msa0922900;Name=Msa0922900 |
| chr6_2 | mRNA | 62616527 | 62617634 | 62616527 | ID=Msa0922900-mRNA-1;Parent=Msa0922900;Name=Msa0922900-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|1|1|3|0|268 |
| chr6_2 | exon | 62617127 | 62617634 | 62617127 | ID=Msa0922900-mRNA-1:exon:9705;Parent=Msa0922900-mRNA-1 |
| chr6_2 | exon | 62616918 | 62617007 | 62616918 | ID=Msa0922900-mRNA-1:exon:9704;Parent=Msa0922900-mRNA-1 |
| chr6_2 | exon | 62616527 | 62616735 | 62616527 | ID=Msa0922900-mRNA-1:exon:9703;Parent=Msa0922900-mRNA-1 |
| chr6_2 | CDS | 62617127 | 62617634 | 62617127 | ID=Msa0922900-mRNA-1:cds;Parent=Msa0922900-mRNA-1 |
| chr6_2 | CDS | 62616918 | 62617007 | 62616918 | ID=Msa0922900-mRNA-1:cds;Parent=Msa0922900-mRNA-1 |
| chr6_2 | CDS | 62616527 | 62616735 | 62616527 | ID=Msa0922900-mRNA-1:cds;Parent=Msa0922900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
