AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0923190

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0923190 MtrunA17_Chr6g0485301 74.721 269 43 3 648 891 212 480 4.39e-127 393
Msa0923190 MtrunA17_Chr8g0390631 60.185 324 99 5 593 891 154 472 2.62e-116 365
Msa0923190 MtrunA17_Chr8g0390651 56.790 324 110 5 593 891 163 481 6.49e-107 340
Msa0923190 MtrunA17_Chr6g0485311 63.569 269 73 3 648 891 210 478 7.69e-99 319
Msa0923190 MtrunA17_Chr4g0030281 87.975 158 19 0 130 287 1 158 2.22e-88 296
Msa0923190 MtrunA17_Chr6g0469321 83.832 167 26 1 456 621 1 167 2.36e-81 260
Msa0923190 MtrunA17_Chr7g0262111 71.809 188 49 2 358 541 192 379 9.29e-70 240
Msa0923190 MtrunA17_Chr8g0365221 43.657 268 126 3 648 890 251 518 5.91e-68 236
Msa0923190 MtrunA17_Chr3g0117861 46.468 269 119 3 648 891 252 520 2.77e-67 234
Msa0923190 MtrunA17_Chr4g0059221 43.123 269 128 3 648 891 254 522 3.06e-65 229
Msa0923190 MtrunA17_Chr3g0118121 36.059 269 144 5 649 890 205 472 1.10e-42 163
Msa0923190 MtrunA17_Chr4g0059521 33.457 269 151 5 649 890 205 472 2.81e-40 156
Msa0923190 MtrunA17_Chr3g0118081 34.201 269 149 5 649 890 235 502 1.52e-39 154
Msa0923190 MtrunA17_Chr7g0249681 61.940 134 21 2 95 201 276 406 2.57e-39 159
Msa0923190 MtrunA17_Chr5g0394661 82.353 85 15 0 203 287 151 235 4.26e-39 156
Msa0923190 MtrunA17_Chr1g0154731 41.379 203 115 2 358 556 190 392 1.23e-37 148
Msa0923190 MtrunA17_Chr2g0310091 31.579 285 168 5 629 888 232 514 4.27e-30 126
Msa0923190 MtrunA17_Chr1g0149841 82.143 84 15 0 525 608 208 291 5.79e-28 119
Msa0923190 MtrunA17_Chr1g0149841 70.732 41 12 0 604 644 409 449 3.73e-11 66.6
Msa0923190 MtrunA17_Chr2g0313821 36.364 198 112 6 357 541 190 386 9.41e-26 112
Msa0923190 MtrunA17_Chr4g0063221 35.542 166 95 3 358 513 195 358 1.54e-24 108
Msa0923190 MtrunA17_Chr2g0313801 37.126 167 95 4 357 513 190 356 4.80e-24 107
Msa0923190 MtrunA17_Chr2g0313811 37.126 167 95 5 357 513 202 368 1.12e-23 106
Msa0923190 MtrunA17_Chr2g0313781 37.725 167 94 5 357 513 202 368 1.19e-23 106
Msa0923190 MtrunA17_Chr1g0193811 36.196 163 97 4 357 513 195 356 4.86e-23 104
Msa0923190 MtrunA17_Chr2g0313751 34.731 167 99 2 357 513 217 383 7.96e-23 103
Msa0923190 MtrunA17_Chr7g0235261 39.157 166 82 6 359 513 193 350 1.22e-22 102
Msa0923190 MtrunA17_Chr3g0137101 68.919 74 22 1 525 598 215 287 2.67e-22 102
Msa0923190 MtrunA17_Chr5g0446131 34.132 167 100 3 357 513 188 354 3.12e-22 101
Msa0923190 MtrunA17_Chr2g0313791 33.533 167 101 3 357 513 185 351 8.30e-22 100
Msa0923190 MtrunA17_Chr8g0362731 36.905 168 97 4 359 520 91 255 8.37e-22 99.4
Msa0923190 MtrunA17_Chr2g0313761 36.527 167 96 4 357 513 185 351 8.84e-22 100
Msa0923190 MtrunA17_Chr2g0313831 37.126 167 95 5 357 513 190 356 1.30e-21 99.8
Msa0923190 MtrunA17_Chr4g0004601 38.889 162 88 5 358 513 215 371 2.13e-21 99.4
Msa0923190 MtrunA17_Chr8g0336361 36.196 163 93 5 359 513 202 361 3.99e-19 92.4
Msa0923190 MtrunA17_Chr6g0457421 32.911 158 103 2 359 513 194 351 1.13e-18 90.5
Msa0923190 MtrunA17_Chr2g0294411 26.140 329 206 10 638 937 237 557 1.14e-18 90.9
Msa0923190 MtrunA17_Chr2g0313771 28.326 233 135 7 358 576 199 413 9.88e-18 87.8
Msa0923190 MtrunA17_Chr7g0215181 30.435 207 128 5 359 558 195 392 1.12e-17 87.4
Msa0923190 MtrunA17_Chr2g0288661 30.303 165 105 2 359 513 194 358 1.94e-17 86.7
Msa0923190 MtrunA17_Chr1g0203141 34.591 159 99 5 359 513 198 355 2.11e-17 86.7
Msa0923190 MtrunA17_Chr8g0354511 31.138 167 104 3 357 513 199 364 3.97e-17 85.9
Msa0923190 MtrunA17_Chr8g0354571 29.146 199 126 5 357 542 199 395 1.92e-16 83.6
Msa0923190 MtrunA17_Chr1g0149831 78.125 64 11 1 525 588 145 205 2.19e-16 79.7
Msa0923190 MtrunA17_Chr2g0307301 31.737 167 104 5 357 513 192 358 2.91e-16 83.2
Msa0923190 MtrunA17_Chr2g0307291 32.335 167 103 5 357 513 192 358 3.95e-16 82.8
Msa0923190 MtrunA17_Chr4g0014051 34.021 194 116 7 359 541 206 398 5.72e-16 82.0
Msa0923190 MtrunA17_Chr1g0203151 33.962 159 100 5 359 513 194 351 7.93e-16 81.6
Msa0923190 MtrunA17_Chr6g0479681 33.333 159 101 5 359 513 196 353 8.45e-16 81.6
Msa0923190 MtrunA17_Chr7g0275891 49.485 97 30 3 525 608 208 298 6.44e-14 74.3
Msa0923190 MtrunA17_Chr8g0354531 29.940 167 105 4 357 513 321 485 7.85e-14 75.9
Msa0923190 MtrunA17_Chr2g0308651 32.955 176 92 6 359 513 82 252 3.63e-13 72.8
Msa0923190 MtrunA17_Chr2g0294911 52.113 71 29 1 525 595 228 293 4.88e-13 73.2
Msa0923190 MtrunA17_Chr4g0067981 55.128 78 30 2 525 600 232 306 7.17e-13 72.8
Msa0923190 MtrunA17_Chr6g0472221 30.178 169 111 4 351 513 199 366 9.90e-13 72.0
Msa0923190 MtrunA17_Chr8g0364081 32.000 175 97 4 359 513 205 377 1.09e-12 71.6
Msa0923190 MtrunA17_Chr7g0226861 32.773 119 70 2 4 122 84 192 1.18e-12 72.0
Msa0923190 MtrunA17_Chr6g0472161 30.233 172 114 5 347 513 182 352 1.25e-12 70.9
Msa0923190 MtrunA17_Chr1g0161431 65.385 52 18 0 525 576 217 268 1.57e-12 71.6
Msa0923190 MtrunA17_Chr1g0165151 42.029 69 40 0 4 72 44 112 4.19e-12 64.3
Msa0923190 MtrunA17_Chr3g0084281 31.933 119 71 2 4 122 84 192 4.72e-12 70.1
Msa0923190 MtrunA17_Chr1g0149961 25.856 263 165 6 648 886 211 467 4.74e-12 69.7
Msa0923190 MtrunA17_Chr3g0128461 30.675 163 101 4 359 513 206 364 7.18e-12 68.9
Msa0923190 MtrunA17_Chr3g0082901 32.353 102 62 1 1 102 82 176 2.21e-11 67.4
Msa0923190 MtrunA17_Chr2g0304841 56.061 66 25 2 525 590 230 291 8.37e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0923190 AT3G24503.1 55.556 288 102 4 629 891 193 479 6.76e-93 303
Msa0923190 AT3G48000.1 46.468 269 119 3 648 891 248 516 4.47e-70 243
Msa0923190 AT1G23800.1 46.097 269 120 3 648 891 244 512 3.21e-68 237
Msa0923190 AT1G75130.1 49.045 157 79 1 358 513 190 346 8.79e-43 164
Msa0923190 AT1G74920.2 34.944 269 147 5 649 890 200 467 5.25e-41 158
Msa0923190 AT1G74920.1 34.944 269 147 5 649 890 205 472 5.86e-41 158
Msa0923190 AT3G48170.1 34.201 269 149 5 649 890 205 472 2.77e-40 156
Msa0923190 AT1G23800.2 48.227 141 63 2 648 778 244 384 5.15e-31 127
Msa0923190 AT2G26710.1 40.964 166 81 3 358 513 196 354 9.61e-30 125
Msa0923190 AT1G79440.1 29.811 265 160 4 649 888 242 505 6.08e-25 110
Msa0923190 AT3G14620.1 34.615 156 101 1 359 513 198 353 1.86e-23 105
Msa0923190 AT2G46950.1 31.336 217 135 4 362 576 256 460 1.94e-23 106
Msa0923190 AT3G14640.1 39.157 166 88 6 357 513 193 354 2.53e-23 105
Msa0923190 AT2G46960.1 35.443 158 99 3 358 513 83 239 2.99e-23 103
Msa0923190 AT2G46950.2 36.364 154 96 2 362 513 256 409 3.34e-23 104
Msa0923190 AT3G14640.2 39.157 166 88 6 357 513 215 376 3.45e-23 105
Msa0923190 AT3G14690.1 32.821 195 117 5 357 541 192 382 8.41e-23 103
Msa0923190 AT2G46960.2 35.443 158 99 3 358 513 199 355 8.75e-23 103
Msa0923190 AT3G14690.2 32.821 195 117 5 357 541 227 417 1.03e-22 103
Msa0923190 AT4G27710.1 31.111 225 135 6 358 576 197 407 5.17e-22 101
Msa0923190 AT4G27710.2 36.420 162 95 4 358 513 197 356 7.72e-22 99.4
Msa0923190 AT3G14630.1 32.292 192 122 4 357 541 188 378 1.22e-21 100
Msa0923190 AT3G14660.2 31.282 195 120 5 357 541 46 236 1.25e-21 98.2
Msa0923190 AT3G14630.2 32.292 192 122 4 357 541 243 433 2.03e-21 100
Msa0923190 AT3G14650.1 32.308 195 118 5 357 541 192 382 3.69e-21 99.0
Msa0923190 AT3G14680.1 30.729 192 125 4 357 541 192 382 5.96e-21 98.2
Msa0923190 AT3G14660.1 31.282 195 120 5 357 541 192 382 6.34e-21 98.2
Msa0923190 AT3G14660.3 32.065 184 111 5 357 530 192 371 9.84e-21 96.3
Msa0923190 AT3G14610.1 29.114 237 142 6 348 576 184 402 8.17e-20 94.7
Msa0923190 AT3G66658.2 25.000 328 211 11 638 937 237 557 1.31e-15 81.6
Msa0923190 AT3G66658.1 26.241 282 177 9 638 891 237 515 2.92e-15 80.5
Msa0923190 AT3G16857.3 53.247 77 30 1 525 601 184 254 9.31e-15 79.0
Msa0923190 AT3G16857.2 53.247 77 30 1 525 601 254 324 1.09e-14 79.0
Msa0923190 AT3G16857.1 53.247 77 30 1 525 601 254 324 1.23e-14 79.0
Msa0923190 AT2G25180.1 67.925 53 17 0 525 577 212 264 6.74e-13 73.2
Msa0923190 AT5G38450.1 33.939 165 97 3 359 513 196 358 5.06e-12 70.1
Msa0923190 AT5G38450.2 34.911 169 90 5 359 513 196 358 5.66e-12 69.3
Msa0923190 AT5G58080.1 53.030 66 29 1 525 590 211 274 1.08e-11 69.3
Msa0923190 AT1G54100.2 27.778 198 118 5 670 847 240 432 6.39e-11 66.6
Msa0923190 AT1G54100.1 27.778 198 118 5 670 847 240 432 6.39e-11 66.6

Find 179 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTAACATATTAGCATAAT+TGG 0.086239 6_2:+63122634 None:intergenic
GGTTATGATCCTACACTTTA+TGG 0.145851 6_2:-63122827 Msa0923190:CDS
CCATTCGAACAGGAGTTATT+TGG 0.188302 6_2:-63120418 Msa0923190:CDS
GGTTGCTCCTTGCAAAATAA+TGG 0.220426 6_2:-63123007 Msa0923190:CDS
ACTGGTAAGGTTAGCTTTAC+TGG 0.225096 6_2:-63120989 Msa0923190:CDS
ATCTTAACCTGCTTGCTTTC+CGG 0.240960 6_2:+63123382 None:intergenic
TGAGGACCTTGTTGAACTTT+AGG 0.247900 6_2:+63120698 None:intergenic
AAACCAGCTTCACTTGAATT+AGG 0.247929 6_2:-63120920 Msa0923190:CDS
CTGAAACTAAATCTCCTTAT+TGG 0.254396 6_2:-63120209 Msa0923190:CDS
TATTAACCGTGCTGCTATTA+AGG 0.266903 6_2:-63121092 Msa0923190:CDS
TCTTAACCTGCTTGCTTTCC+GGG 0.267579 6_2:+63123383 None:intergenic
TTAGATAGAGTATATACTTC+TGG 0.274368 6_2:+63121320 None:intergenic
AGTAACTGTGACAAAGAATT+TGG 0.283055 6_2:-63120465 Msa0923190:CDS
GAAAAGAGGGTTAATCAATT+AGG 0.296536 6_2:-63121424 Msa0923190:CDS
ACAGAAGGTGCAATGGTATT+TGG 0.304024 6_2:-63121165 Msa0923190:CDS
CAAACCGAGAACGATGTAAT+TGG 0.321464 6_2:-63123028 Msa0923190:CDS
GCCAGGCTTCTTGCTGGCCA+TGG 0.327168 6_2:-63122014 Msa0923190:CDS
TATTGGCCTGTTGGAGTTAG+TGG 0.331545 6_2:-63120192 Msa0923190:CDS
CAAAATAATGGGAAGCATAT+TGG 0.332457 6_2:-63122995 Msa0923190:CDS
ATTAATTGCTACTTTGCCTT+TGG 0.339812 6_2:-63120395 Msa0923190:CDS
TCCAACTACACTTCTTAAAT+AGG 0.345820 6_2:+63121228 None:intergenic
AATAGCTAAATCCAGGGATA+TGG 0.347520 6_2:+63121767 None:intergenic
TTTGGAAATGACATTCTCTA+TGG 0.347796 6_2:-63120377 Msa0923190:CDS
TCCTTCTCCAAGTTCGAATA+GGG 0.349178 6_2:+63123281 None:intergenic
CATCCGGCCAGGCTTCTTGC+TGG 0.350968 6_2:-63122020 Msa0923190:CDS
TGGAATATTGTTTGTTATAG+AGG 0.356244 6_2:-63121985 Msa0923190:CDS
TTCAACAAGACGTGAAATAA+TGG 0.361036 6_2:-63120966 Msa0923190:CDS
TGAGGCTAGTGACTGTGTTC+TGG 0.362072 6_2:-63122957 Msa0923190:CDS
AAGGGAGAAATTTGTGTTGC+GGG 0.367098 6_2:-63120815 Msa0923190:CDS
TAGTGGACAAAGCAAGAGTT+TGG 0.367209 6_2:-63120742 Msa0923190:CDS
CTAACTCCAACAGGCCAATA+AGG 0.369121 6_2:+63120195 None:intergenic
TGATGAGGATAACACACTTT+TGG 0.374598 6_2:-63122804 Msa0923190:CDS
ATCCTTCTCCAAGTTCGAAT+AGG 0.376656 6_2:+63123280 None:intergenic
TTAACATTGGAGAAAATTGT+AGG 0.377777 6_2:+63120560 None:intergenic
GAATGTAAAACCTACTTTGC+TGG 0.377877 6_2:-63121559 Msa0923190:CDS
GTATGTTGAATTATGAAAAT+CGG 0.382527 6_2:+63123093 None:intergenic
ATTAACATATTAGCATAATT+GGG 0.390652 6_2:+63122635 None:intergenic
GGAAGATAAGTGTTTGTTCC+AGG 0.392171 6_2:+63121124 None:intergenic
GAAGAAGTGCCAAAGTTAAC+AGG 0.394527 6_2:+63121518 None:intergenic
GTTGCTCCTTGCAAAATAAT+GGG 0.395260 6_2:-63123006 Msa0923190:CDS
TTCGATGTAGTACCTGGATT+TGG 0.399971 6_2:-63121025 Msa0923190:CDS
CCCATGGCCAGCAAGAAGCC+TGG 0.405024 6_2:+63122013 None:intergenic
TTCAACATACTTGTTATCAA+TGG 0.415765 6_2:-63123080 Msa0923190:CDS
CCAGGCTTCTTGCTGGCCAT+GGG 0.416133 6_2:-63122013 Msa0923190:CDS
TGAATTTGAGAAGAAGTTAG+TGG 0.419217 6_2:-63120759 Msa0923190:CDS
GTGAAAGTTCAGACTGTGAT+TGG 0.429225 6_2:-63122670 Msa0923190:CDS
CCTCCTAATTCAAGTGAAGC+TGG 0.438912 6_2:+63120917 None:intergenic
AGTTGGTTTGGAAGAGATTG+TGG 0.439358 6_2:-63120341 Msa0923190:CDS
AACATCTAACCTGTTAACTT+TGG 0.439400 6_2:-63121527 Msa0923190:CDS
GGTTACAAGATGAGTTGGTT+TGG 0.444090 6_2:-63120353 Msa0923190:CDS
GATACTTAATGATCATTGCT+TGG 0.446314 6_2:-63122873 Msa0923190:CDS
TGCATCTGAACTACTAGTTA+AGG 0.446478 6_2:+63121252 None:intergenic
TGTTGAACTTTAGGATCAAA+AGG 0.452062 6_2:+63120707 None:intergenic
GTTGACAAATAGCTAAATCC+AGG 0.454203 6_2:+63121760 None:intergenic
GCAACCAATTACATCGTTCT+CGG 0.457742 6_2:+63123024 None:intergenic
TGAAAAGTACCGCATCTGTT+TGG 0.460298 6_2:-63123345 Msa0923190:CDS
TCCTATTTAAGAAGTGTAGT+TGG 0.463038 6_2:-63121229 Msa0923190:CDS
CGATTACCACTAACTCCAAC+AGG 0.467093 6_2:+63120186 None:intergenic
AGTGTCAACAATAAAAGATA+TGG 0.467971 6_2:-63120497 Msa0923190:CDS
AAAGCAAGAGTTTGGGCTGT+TGG 0.477362 6_2:-63120734 Msa0923190:CDS
ATTATTTCATATATTGAGCA+TGG 0.477894 6_2:-63120650 Msa0923190:CDS
GAGGCTGAGTTGCATATTCA+AGG 0.480186 6_2:-63122716 Msa0923190:CDS
GGAAAACAAACAAGGTCATA+TGG 0.480991 6_2:-63121281 Msa0923190:CDS
GTCGATTTCCTTCCTAGTGA+TGG 0.481687 6_2:-63122049 Msa0923190:CDS
CAACTAAGAAGAACAAAGAT+AGG 0.482446 6_2:-63121741 Msa0923190:CDS
GCACGGTTAATAGATTCTCT+TGG 0.482574 6_2:+63121103 None:intergenic
AAATCTCCTTATTGGCCTGT+TGG 0.484357 6_2:-63120201 Msa0923190:CDS
CAACTCAGCCTCAACTGAAT+CGG 0.484787 6_2:+63122727 None:intergenic
CCAAATAACTCCTGTTCGAA+TGG 0.486479 6_2:+63120418 None:intergenic
GAAAGAACCCTATTCGAACT+TGG 0.486536 6_2:-63123288 Msa0923190:CDS
CTCAAGTTGTGTTGTACGCA+TGG 0.493785 6_2:+63120532 None:intergenic
ATCTGAAATTCCAGCCGGTA+TGG 0.495993 6_2:+63121054 None:intergenic
CATTAGCATCGTATTTAACA+AGG 0.497087 6_2:-63120834 Msa0923190:CDS
AGTGGACAAAGCAAGAGTTT+GGG 0.499628 6_2:-63120741 Msa0923190:CDS
ATGGAGGTTACAAGATGAGT+TGG 0.499635 6_2:-63120358 Msa0923190:CDS
TTACCAGTCATCTGAATTCG+AGG 0.500810 6_2:-63122133 Msa0923190:intron
TGGCCAGCAAGAAGCCTGGC+CGG 0.502144 6_2:+63122017 None:intergenic
GTATCAAGGTCCATTCGAAC+AGG 0.502385 6_2:-63120428 Msa0923190:CDS
AAGACACGTGAAGAAATTGA+TGG 0.504719 6_2:-63121466 Msa0923190:CDS
TCAGTATATCCACCCTTCAC+TGG 0.508342 6_2:+63123142 None:intergenic
CTAGAGAAGCAATTGAAAAG+AGG 0.512949 6_2:-63121438 Msa0923190:CDS
TGACTGTGTTCTGGCTGAAG+TGG 0.513722 6_2:-63122948 Msa0923190:CDS
CCTGCAGTTGCACCAAATCC+AGG 0.513945 6_2:+63121013 None:intergenic
GGAGTATTCGATGTAGTACC+TGG 0.515308 6_2:-63121031 Msa0923190:CDS
TATTAGCAAAATATGAAGAA+TGG 0.516199 6_2:-63121495 Msa0923190:CDS
TTTCGTGTGTTTGTTCAAGA+AGG 0.516942 6_2:-63120791 Msa0923190:CDS
TTTCTGCAGATGTTATATCA+AGG 0.517188 6_2:-63121882 Msa0923190:CDS
TGTTCGAATGGACCTTGATA+CGG 0.520311 6_2:+63120430 None:intergenic
GATGGAGTGTCCATCCGGCC+AGG 0.521277 6_2:-63122031 Msa0923190:CDS
AGTTTCTACAAGAATGAAGT+TGG 0.522151 6_2:-63121619 Msa0923190:CDS
GTTGGAAGTGTCCATATCCC+TGG 0.522842 6_2:-63121778 Msa0923190:CDS
TTTGGTGCAACTGCAGGAAC+TGG 0.523481 6_2:-63121007 Msa0923190:CDS
TCAGATAATTGTGGTAGTCC+TGG 0.523806 6_2:-63122848 Msa0923190:CDS
CTAGTGATGGAGTGTCCATC+CGG 0.524370 6_2:-63122036 Msa0923190:CDS
TTGTTATAGAGGTGTATTGA+AGG 0.525389 6_2:-63121974 Msa0923190:CDS
TGGAGAAGATAGACTACAGC+TGG 0.525660 6_2:-63121596 Msa0923190:CDS
ATAACATCTGCAGAAAGATC+AGG 0.525890 6_2:+63121889 None:intergenic
TAAAGTTCAACAAGGTCCTC+AGG 0.526739 6_2:-63120696 Msa0923190:CDS
CTTGCTGGCCATGGGTGCCG+TGG 0.529511 6_2:-63122005 Msa0923190:CDS
CCTGGATTTGGTGCAACTGC+AGG 0.534107 6_2:-63121013 Msa0923190:CDS
CTACTTTACTTGAAAACAGA+AGG 0.542032 6_2:-63121180 Msa0923190:CDS
CCAGCTTCACTTGAATTAGG+AGG 0.544210 6_2:-63120917 Msa0923190:CDS
CAGCAAGAAGCCTGGCCGGA+TGG 0.546158 6_2:+63122021 None:intergenic
GATGTAGCAACTCTTTCGAC+AGG 0.546232 6_2:-63120620 Msa0923190:CDS
GTTTGGAAGAGATTGTGGAT+TGG 0.547188 6_2:-63120336 Msa0923190:CDS
AAAGTACCGCATCTGTTTGG+TGG 0.547985 6_2:-63123342 Msa0923190:CDS
TTTCGACGTCATGGACGTCC+CGG 0.550444 6_2:-63123401 Msa0923190:CDS
ATATAGCAAGCACCGTATCA+AGG 0.555289 6_2:-63120442 Msa0923190:CDS
GGAAATGACATTCTCTATGG+AGG 0.556285 6_2:-63120374 Msa0923190:CDS
TCAAGCACAATGCAACTACC+TGG 0.556515 6_2:-63121142 Msa0923190:CDS
TAGAGAAGCAATTGAAAAGA+GGG 0.557169 6_2:-63121437 Msa0923190:CDS
GGACGTCCCGGAAAGCAAGC+AGG 0.557424 6_2:-63123389 Msa0923190:CDS
GATGTATCAACCGCCAGTGA+AGG 0.558288 6_2:-63123155 Msa0923190:CDS
TTCTACAAGAATGAAGTTGG+TGG 0.559129 6_2:-63121616 Msa0923190:CDS
CTTGAAAACAGAAGGTGCAA+TGG 0.560167 6_2:-63121172 Msa0923190:CDS
CGGATGGACACTCCATCACT+AGG 0.563561 6_2:+63122037 None:intergenic
ACAAGTCTGATCAATCGAAA+GGG 0.569603 6_2:-63122692 Msa0923190:CDS
TGAAAGTTCAGACTGTGATT+GGG 0.569942 6_2:-63122669 Msa0923190:CDS
TCATTAAAGACCATACCGGC+TGG 0.570747 6_2:-63121064 Msa0923190:CDS
ACGCATGGCCTCCTTAACAT+TGG 0.573171 6_2:+63120547 None:intergenic
CAAGGGAGAAATTTGTGTTG+CGG 0.575569 6_2:-63120816 Msa0923190:CDS
CAGCCGTCACATTGAACTCA+AGG 0.575592 6_2:-63120139 Msa0923190:CDS
ACAATATTCCACGGCACCCA+TGG 0.576044 6_2:+63121997 None:intergenic
TGAAAATCTGACATGGGAGA+AGG 0.576529 6_2:-63121356 Msa0923190:CDS
TATTTAAGAAGTGTAGTTGG+AGG 0.577577 6_2:-63121226 Msa0923190:CDS
TGCAACTGCAGGAACTGGTA+AGG 0.578355 6_2:-63121002 Msa0923190:CDS
ATGTATCAACCGCCAGTGAA+GGG 0.579389 6_2:-63123154 Msa0923190:CDS
TATATACTTCTGGAGACGGC+TGG 0.581516 6_2:+63121330 None:intergenic
AACAAGTCTGATCAATCGAA+AGG 0.582103 6_2:-63122693 Msa0923190:CDS
AAGTACCGCATCTGTTTGGT+GGG 0.583147 6_2:-63123341 Msa0923190:CDS
ACCCTATTCGAACTTGGAGA+AGG 0.585464 6_2:-63123282 Msa0923190:CDS
ATACCGGCTGGAATTTCAGA+TGG 0.591251 6_2:-63121052 Msa0923190:CDS
ATAGAGAATGTCATTTCCAA+AGG 0.592177 6_2:+63120379 None:intergenic
TGGTGTAGATTTGCATCATG+AGG 0.595637 6_2:-63122975 Msa0923190:CDS
AGAGTATATACTTCTGGAGA+CGG 0.598440 6_2:+63121326 None:intergenic
AATTGCCTCTTGTCAACCTG+AGG 0.599117 6_2:+63120680 None:intergenic
TCTAATCGTTGAAGAATAGA+CGG 0.601987 6_2:+63120234 None:intergenic
TCCTACACTTTATGGTGATG+AGG 0.603546 6_2:-63122819 Msa0923190:CDS
TATCAGATGATGCATATGCT+CGG 0.604184 6_2:-63122763 Msa0923190:CDS
GTATATCCACCCTTCACTGG+CGG 0.605481 6_2:+63123145 None:intergenic
GGAAGCAACTCTCGTCGCCA+CGG 0.605858 6_2:-63123177 Msa0923190:CDS
AGACACGTGAAGAAATTGAT+GGG 0.609154 6_2:-63121465 Msa0923190:CDS
GCAAACTGATTGAAACCAAG+AGG 0.611708 6_2:-63121684 Msa0923190:CDS
GAGTTCATTAAAGACCATAC+CGG 0.617018 6_2:-63121068 Msa0923190:CDS
ATTGAAGGCTGATTTAATTG+CGG 0.617138 6_2:-63121959 Msa0923190:CDS
TTATATATCCGATTCAGTTG+AGG 0.617814 6_2:-63122735 Msa0923190:CDS
ACTCCATCTGAAATTCCAGC+CGG 0.619008 6_2:+63121049 None:intergenic
GATGATGCATATGCTCGGAA+AGG 0.619514 6_2:-63122758 Msa0923190:CDS
TGGACACTCCATCACTAGGA+AGG 0.625199 6_2:+63122041 None:intergenic
CTAAGAAGAACAAAGATAGG+TGG 0.625403 6_2:-63121738 Msa0923190:CDS
CATGCGTACAACACAACTTG+AGG 0.628389 6_2:-63120531 Msa0923190:CDS
CTATAACAAACAATATTCCA+CGG 0.628635 6_2:+63121988 None:intergenic
GACGAACTTAGCGAAACTGC+AGG 0.631047 6_2:+63122075 None:intergenic
CATGAAAGATTTAACTCTCG+CGG 0.633915 6_2:-63123244 Msa0923190:CDS
TCAATGTGACGGCTGTGATG+CGG 0.637735 6_2:+63120147 None:intergenic
TGCTTGGCATCAGATAATTG+TGG 0.638188 6_2:-63122857 Msa0923190:CDS
ATTAGCATCGTATTTAACAA+GGG 0.639693 6_2:-63120833 Msa0923190:CDS
TATCAACCGCCAGTGAAGGG+TGG 0.639862 6_2:-63123151 Msa0923190:CDS
AACTCTCCTTAATAGCAGCA+CGG 0.641231 6_2:+63121086 None:intergenic
ATGTGACGGCTGTGATGCGG+CGG 0.642061 6_2:+63120150 None:intergenic
ATTCCTTGAGTTCAATGTGA+CGG 0.642305 6_2:+63120136 None:intergenic
TTGACAAATAGCTAAATCCA+GGG 0.645575 6_2:+63121761 None:intergenic
GAAGGGTGGATATACTGAAG+AGG 0.646866 6_2:-63123137 Msa0923190:CDS
TCCTCATCACCATAAAGTGT+AGG 0.649583 6_2:+63122818 None:intergenic
TCTGAATTCGAGGAAGTGCA+AGG 0.652298 6_2:-63122123 Msa0923190:CDS
AAATCTGACATGGGAGAAGG+CGG 0.652430 6_2:-63121353 Msa0923190:CDS
AAGGTCCTCAGGTTGACAAG+AGG 0.654761 6_2:-63120685 Msa0923190:CDS
GGGTGGATATACTGAAGAGG+CGG 0.655174 6_2:-63123134 Msa0923190:CDS
TGAATGTTGAAAATCTGACA+TGG 0.668917 6_2:-63121363 Msa0923190:CDS
TGAAGTGGATGACAAAAGAG+AGG 0.672707 6_2:-63122933 Msa0923190:CDS
TTTGATCCTAAAGTTCAACA+AGG 0.673250 6_2:-63120704 Msa0923190:CDS
AGTTGTGTGGAAAACAAACA+AGG 0.675905 6_2:-63121289 Msa0923190:CDS
GAATGTTGAAAATCTGACAT+GGG 0.676073 6_2:-63121362 Msa0923190:CDS
TAATCAATTAGGCATTGACA+AGG 0.692865 6_2:-63121413 Msa0923190:CDS
AGTTCAGACTGTGATTGGGA+TGG 0.696786 6_2:-63122665 Msa0923190:CDS
TAAAGTGTAGGATCATAACC+AGG 0.713959 6_2:+63122830 None:intergenic
ACTGGCGGTTGATACATCCG+TGG 0.722661 6_2:+63123160 None:intergenic
TCTATCCCACCAAACAGATG+CGG 0.724005 6_2:+63123336 None:intergenic
CATCTGCAGAAAGATCAGGA+AGG 0.757365 6_2:+63121893 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAACATATTAGCATAATT+GGG + chr6_2:63120947-63120966 None:intergenic 15.0%
!! AATTAACATATTAGCATAAT+TGG + chr6_2:63120948-63120967 None:intergenic 15.0%
!! AGCATTATAAAAAATTAAGA+GGG + chr6_2:63122696-63122715 None:intergenic 15.0%
!!! AATTTTTCAATTGAAACAAG+CGG + chr6_2:63120377-63120396 None:intergenic 20.0%
!! GTATGTTGAATTATGAAAAT+CGG + chr6_2:63120489-63120508 None:intergenic 20.0%
!! TATTAGCAAAATATGAAGAA+TGG - chr6_2:63122084-63122103 Msa0923190:CDS 20.0%
!! GCATTATAAAAAATTAAGAG+GGG + chr6_2:63122695-63122714 None:intergenic 20.0%
!! CAGCATTATAAAAAATTAAG+AGG + chr6_2:63122697-63122716 None:intergenic 20.0%
!! ATTATTTCATATATTGAGCA+TGG - chr6_2:63122929-63122948 Msa0923190:CDS 20.0%
!! TTTATCAATTTCTATCATGA+AGG - chr6_2:63123317-63123336 Msa0923190:CDS 20.0%
!!! ATGTAGAAGAATTTTTGGAT+TGG - chr6_2:63120135-63120154 Msa0923190:CDS 25.0%
!!! TGTAGAAGAATTTTTGGATT+GGG - chr6_2:63120136-63120155 Msa0923190:CDS 25.0%
! GCTTGTTTCAATTGAAAAAT+TGG - chr6_2:63120376-63120395 Msa0923190:CDS 25.0%
! TTTCAATTGAAAAATTGGAG+AGG - chr6_2:63120381-63120400 Msa0923190:CDS 25.0%
!!! TTCAACATACTTGTTATCAA+TGG - chr6_2:63120499-63120518 Msa0923190:CDS 25.0%
! ATGTTGTGAATGAATTTCTT+CGG + chr6_2:63121395-63121414 None:intergenic 25.0%
! CTATAACAAACAATATTCCA+CGG + chr6_2:63121594-63121613 None:intergenic 25.0%
!!! TGGAATATTGTTTGTTATAG+AGG - chr6_2:63121594-63121613 Msa0923190:CDS 25.0%
!!! ACATCTATTTTTATGCTCAA+TGG + chr6_2:63121657-63121676 None:intergenic 25.0%
!! ATCAGTTCAAGAATCTTTTT+CGG + chr6_2:63122197-63122216 None:intergenic 25.0%
! TTAGATAGAGTATATACTTC+TGG + chr6_2:63122262-63122281 None:intergenic 25.0%
! ATTAGCATCGTATTTAACAA+GGG - chr6_2:63122746-63122765 Msa0923190:CDS 25.0%
! TTAACATTGGAGAAAATTGT+AGG + chr6_2:63123022-63123041 None:intergenic 25.0%
!! TACAATTTTCTCCAATGTTA+AGG - chr6_2:63123021-63123040 Msa0923190:CDS 25.0%
! AGTGTCAACAATAAAAGATA+TGG - chr6_2:63123082-63123101 Msa0923190:CDS 25.0%
! ATTTATGACTTCTCTTGATA+TGG - chr6_2:63123290-63123309 Msa0923190:CDS 25.0%
! CAAAATAATGGGAAGCATAT+TGG - chr6_2:63120584-63120603 Msa0923190:CDS 30.0%
GATACTTAATGATCATTGCT+TGG - chr6_2:63120706-63120725 Msa0923190:CDS 30.0%
TTATATATCCGATTCAGTTG+AGG - chr6_2:63120844-63120863 Msa0923190:CDS 30.0%
! ATTGAAGCAGAAGCTTTTAA+TGG - chr6_2:63120965-63120984 Msa0923190:CDS 30.0%
TTGTACATCATGAATTGAAC+CGG + chr6_2:63121165-63121184 None:intergenic 30.0%
AAAAACTCCAGTTTCATTGA+AGG + chr6_2:63121188-63121207 None:intergenic 30.0%
TGATTGTTTGAAAGAAGAGA+AGG - chr6_2:63121337-63121356 Msa0923190:CDS 30.0%
!!! GATGACTTGTCATTGATTTT+TGG - chr6_2:63121420-63121439 Msa0923190:CDS 30.0%
! TTGTTATAGAGGTGTATTGA+AGG - chr6_2:63121605-63121624 Msa0923190:CDS 30.0%
! ATTGAAGGCTGATTTAATTG+CGG - chr6_2:63121620-63121639 Msa0923190:CDS 30.0%
TTTCTGCAGATGTTATATCA+AGG - chr6_2:63121697-63121716 Msa0923190:CDS 30.0%
!!! TTTTAGTAGCAGTTTTGAAG+AGG - chr6_2:63121725-63121744 Msa0923190:CDS 30.0%
!!! TTTAGTAGCAGTTTTGAAGA+GGG - chr6_2:63121726-63121745 Msa0923190:CDS 30.0%
TTGACAAATAGCTAAATCCA+GGG + chr6_2:63121821-63121840 None:intergenic 30.0%
CAACTAAGAAGAACAAAGAT+AGG - chr6_2:63121838-63121857 Msa0923190:CDS 30.0%
! ATTTTCTTTAACACTCCTCT+TGG + chr6_2:63121913-63121932 None:intergenic 30.0%
AGTTTCTACAAGAATGAAGT+TGG - chr6_2:63121960-63121979 Msa0923190:CDS 30.0%
AACATCTAACCTGTTAACTT+TGG - chr6_2:63122052-63122071 Msa0923190:CDS 30.0%
TAGAGAAGCAATTGAAAAGA+GGG - chr6_2:63122142-63122161 Msa0923190:intron 30.0%
GAAAAGAGGGTTAATCAATT+AGG - chr6_2:63122155-63122174 Msa0923190:intron 30.0%
!! TAATCAATTAGGCATTGACA+AGG - chr6_2:63122166-63122185 Msa0923190:intron 30.0%
TGAATGTTGAAAATCTGACA+TGG - chr6_2:63122216-63122235 Msa0923190:intron 30.0%
GAATGTTGAAAATCTGACAT+GGG - chr6_2:63122217-63122236 Msa0923190:intron 30.0%
TCTAAAAAGAGTTAGTTGTG+TGG - chr6_2:63122277-63122296 Msa0923190:intron 30.0%
! TCCTATTTAAGAAGTGTAGT+TGG - chr6_2:63122350-63122369 Msa0923190:intron 30.0%
TCCAACTACACTTCTTAAAT+AGG + chr6_2:63122354-63122373 None:intergenic 30.0%
! TATTTAAGAAGTGTAGTTGG+AGG - chr6_2:63122353-63122372 Msa0923190:intron 30.0%
CTACTTTACTTGAAAACAGA+AGG - chr6_2:63122399-63122418 Msa0923190:intron 30.0%
TTCAACAAGACGTGAAATAA+TGG - chr6_2:63122613-63122632 Msa0923190:CDS 30.0%
CATTAGCATCGTATTTAACA+AGG - chr6_2:63122745-63122764 Msa0923190:CDS 30.0%
TGAATTTGAGAAGAAGTTAG+TGG - chr6_2:63122820-63122839 Msa0923190:CDS 30.0%
!! TGTTGAACTTTAGGATCAAA+AGG + chr6_2:63122875-63122894 None:intergenic 30.0%
TTTGATCCTAAAGTTCAACA+AGG - chr6_2:63122875-63122894 Msa0923190:CDS 30.0%
TCGACAGGTAGTAAAAAAAT+TGG - chr6_2:63122974-63122993 Msa0923190:CDS 30.0%
! AATTTTCTCCAATGTTAAGG+AGG - chr6_2:63123024-63123043 Msa0923190:CDS 30.0%
AGTAACTGTGACAAAGAATT+TGG - chr6_2:63123114-63123133 Msa0923190:CDS 30.0%
!! ATTAATTGCTACTTTGCCTT+TGG - chr6_2:63123184-63123203 Msa0923190:CDS 30.0%
! ATAGAGAATGTCATTTCCAA+AGG + chr6_2:63123203-63123222 None:intergenic 30.0%
TTTGGAAATGACATTCTCTA+TGG - chr6_2:63123202-63123221 Msa0923190:CDS 30.0%
TCTAATCGTTGAAGAATAGA+CGG + chr6_2:63123348-63123367 None:intergenic 30.0%
CTGAAACTAAATCTCCTTAT+TGG - chr6_2:63123370-63123389 Msa0923190:CDS 30.0%
!! TGATAGATTTTTCGACGTCA+TGG - chr6_2:63120169-63120188 Msa0923190:CDS 35.0%
CATGAAAGATTTAACTCTCG+CGG - chr6_2:63120335-63120354 Msa0923190:CDS 35.0%
GTTGCTCCTTGCAAAATAAT+GGG - chr6_2:63120573-63120592 Msa0923190:CDS 35.0%
!! ATGCTTCCCATTATTTTGCA+AGG + chr6_2:63120582-63120601 None:intergenic 35.0%
TAAAGTGTAGGATCATAACC+AGG + chr6_2:63120752-63120771 None:intergenic 35.0%
GGTTATGATCCTACACTTTA+TGG - chr6_2:63120752-63120771 Msa0923190:CDS 35.0%
! TGATGAGGATAACACACTTT+TGG - chr6_2:63120775-63120794 Msa0923190:CDS 35.0%
!!! AACACACTTTTGGAATTGTC+TGG - chr6_2:63120785-63120804 Msa0923190:CDS 35.0%
TATCAGATGATGCATATGCT+CGG - chr6_2:63120816-63120835 Msa0923190:CDS 35.0%
AACAAGTCTGATCAATCGAA+AGG - chr6_2:63120886-63120905 Msa0923190:CDS 35.0%
ACAAGTCTGATCAATCGAAA+GGG - chr6_2:63120887-63120906 Msa0923190:CDS 35.0%
TGAAAGTTCAGACTGTGATT+GGG - chr6_2:63120910-63120929 Msa0923190:CDS 35.0%
CAAATAGATGAACTGAATGC+CGG - chr6_2:63121143-63121162 Msa0923190:CDS 35.0%
TGTACAACCTTCAATGAAAC+TGG - chr6_2:63121178-63121197 Msa0923190:CDS 35.0%
AAAAGTTCGAGATTTCGACA+AGG + chr6_2:63121257-63121276 None:intergenic 35.0%
! TGTCGAAATCTCGAACTTTT+TGG - chr6_2:63121257-63121276 Msa0923190:CDS 35.0%
! GTCGAAATCTCGAACTTTTT+GGG - chr6_2:63121258-63121277 Msa0923190:CDS 35.0%
TTCAAACAATCATCGTTGTC+TGG + chr6_2:63121329-63121348 None:intergenic 35.0%
!! CGGATTTGTTTGTTGATTTG+CGG + chr6_2:63121375-63121394 None:intergenic 35.0%
ATAACATCTGCAGAAAGATC+AGG + chr6_2:63121693-63121712 None:intergenic 35.0%
AATAGCTAAATCCAGGGATA+TGG + chr6_2:63121815-63121834 None:intergenic 35.0%
GTTGACAAATAGCTAAATCC+AGG + chr6_2:63121822-63121841 None:intergenic 35.0%
CTAAGAAGAACAAAGATAGG+TGG - chr6_2:63121841-63121860 Msa0923190:CDS 35.0%
TTCTACAAGAATGAAGTTGG+TGG - chr6_2:63121963-63121982 Msa0923190:CDS 35.0%
GAATGTAAAACCTACTTTGC+TGG - chr6_2:63122020-63122039 Msa0923190:CDS 35.0%
! TGTATCTTTTCCAGCAAAGT+AGG + chr6_2:63122033-63122052 None:intergenic 35.0%
AAGACACGTGAAGAAATTGA+TGG - chr6_2:63122113-63122132 Msa0923190:CDS 35.0%
AGACACGTGAAGAAATTGAT+GGG - chr6_2:63122114-63122133 Msa0923190:CDS 35.0%
CTAGAGAAGCAATTGAAAAG+AGG - chr6_2:63122141-63122160 Msa0923190:intron 35.0%
! AGAGTATATACTTCTGGAGA+CGG + chr6_2:63122256-63122275 None:intergenic 35.0%
AGTTGTGTGGAAAACAAACA+AGG - chr6_2:63122290-63122309 Msa0923190:intron 35.0%
GGAAAACAAACAAGGTCATA+TGG - chr6_2:63122298-63122317 Msa0923190:intron 35.0%
TGCATCTGAACTACTAGTTA+AGG + chr6_2:63122330-63122349 None:intergenic 35.0%
! TATTAACCGTGCTGCTATTA+AGG - chr6_2:63122487-63122506 Msa0923190:intron 35.0%
GAGTTCATTAAAGACCATAC+CGG - chr6_2:63122511-63122530 Msa0923190:intron 35.0%
AAACCAGCTTCACTTGAATT+AGG - chr6_2:63122659-63122678 Msa0923190:CDS 35.0%
TTTCGTGTGTTTGTTCAAGA+AGG - chr6_2:63122788-63122807 Msa0923190:CDS 35.0%
GTTGTTGATCAAGTAACACA+TGG - chr6_2:63123265-63123284 Msa0923190:CDS 35.0%
ATGACTTCTCTTGATATGGA+AGG - chr6_2:63123294-63123313 Msa0923190:CDS 35.0%
ATTCCTTGAGTTCAATGTGA+CGG + chr6_2:63123446-63123465 None:intergenic 35.0%
ATCTTAACCTGCTTGCTTTC+CGG + chr6_2:63120200-63120219 None:intergenic 40.0%
!! TGAAAAGTACCGCATCTGTT+TGG - chr6_2:63120234-63120253 Msa0923190:CDS 40.0%
GAAAGAACCCTATTCGAACT+TGG - chr6_2:63120291-63120310 Msa0923190:intron 40.0%
TCCTTCTCCAAGTTCGAATA+GGG + chr6_2:63120301-63120320 None:intergenic 40.0%
ATCCTTCTCCAAGTTCGAAT+AGG + chr6_2:63120302-63120321 None:intergenic 40.0%
CAAACCGAGAACGATGTAAT+TGG - chr6_2:63120551-63120570 Msa0923190:CDS 40.0%
GCAACCAATTACATCGTTCT+CGG + chr6_2:63120558-63120577 None:intergenic 40.0%
GGTTGCTCCTTGCAAAATAA+TGG - chr6_2:63120572-63120591 Msa0923190:CDS 40.0%
TGGTGTAGATTTGCATCATG+AGG - chr6_2:63120604-63120623 Msa0923190:CDS 40.0%
TGAAGTGGATGACAAAAGAG+AGG - chr6_2:63120646-63120665 Msa0923190:CDS 40.0%
TGCTTGGCATCAGATAATTG+TGG - chr6_2:63120722-63120741 Msa0923190:CDS 40.0%
TCAGATAATTGTGGTAGTCC+TGG - chr6_2:63120731-63120750 Msa0923190:CDS 40.0%
! TCCTACACTTTATGGTGATG+AGG - chr6_2:63120760-63120779 Msa0923190:CDS 40.0%
TCCTCATCACCATAAAGTGT+AGG + chr6_2:63120764-63120783 None:intergenic 40.0%
GTGAAAGTTCAGACTGTGAT+TGG - chr6_2:63120909-63120928 Msa0923190:CDS 40.0%
! AGCAGAAGCTTTTAATGGTC+TGG - chr6_2:63120970-63120989 Msa0923190:CDS 40.0%
TCTCCTATACAACTTCAGCA+AGG - chr6_2:63121010-63121029 Msa0923190:CDS 40.0%
TGGTTGCGACACATTCTTTA+GGG + chr6_2:63121211-63121230 None:intergenic 40.0%
TTGGTTGCGACACATTCTTT+AGG + chr6_2:63121212-63121231 None:intergenic 40.0%
TAAAGAATGTGTCGCAACCA+AGG - chr6_2:63121211-63121230 Msa0923190:CDS 40.0%
!!! ACTTTTTGGGACAGATCCAT+CGG - chr6_2:63121271-63121290 Msa0923190:CDS 40.0%
AACAATCATCGTTGTCTGGT+GGG + chr6_2:63121325-63121344 None:intergenic 40.0%
AAACAATCATCGTTGTCTGG+TGG + chr6_2:63121326-63121345 None:intergenic 40.0%
TTACCAGTCATCTGAATTCG+AGG - chr6_2:63121446-63121465 Msa0923190:CDS 40.0%
! CATCTTTTCTCACAAGCAGT+TGG - chr6_2:63121783-63121802 Msa0923190:CDS 40.0%
GCAAACTGATTGAAACCAAG+AGG - chr6_2:63121895-63121914 Msa0923190:CDS 40.0%
!! GAAGAAGTGCCAAAGTTAAC+AGG + chr6_2:63122064-63122083 None:intergenic 40.0%
TGAAAATCTGACATGGGAGA+AGG - chr6_2:63122223-63122242 Msa0923190:intron 40.0%
! CTTGAAAACAGAAGGTGCAA+TGG - chr6_2:63122407-63122426 Msa0923190:intron 40.0%
! ACAGAAGGTGCAATGGTATT+TGG - chr6_2:63122414-63122433 Msa0923190:intron 40.0%
GGAAGATAAGTGTTTGTTCC+AGG + chr6_2:63122458-63122477 None:intergenic 40.0%
GCACGGTTAATAGATTCTCT+TGG + chr6_2:63122479-63122498 None:intergenic 40.0%
AACTCTCCTTAATAGCAGCA+CGG + chr6_2:63122496-63122515 None:intergenic 40.0%
TTCGATGTAGTACCTGGATT+TGG - chr6_2:63122554-63122573 Msa0923190:intron 40.0%
!! ACTGGTAAGGTTAGCTTTAC+TGG - chr6_2:63122590-63122609 Msa0923190:intron 40.0%
CAAGGGAGAAATTTGTGTTG+CGG - chr6_2:63122763-63122782 Msa0923190:CDS 40.0%
AAGGGAGAAATTTGTGTTGC+GGG - chr6_2:63122764-63122783 Msa0923190:CDS 40.0%
! TAGTGGACAAAGCAAGAGTT+TGG - chr6_2:63122837-63122856 Msa0923190:CDS 40.0%
AGTGGACAAAGCAAGAGTTT+GGG - chr6_2:63122838-63122857 Msa0923190:CDS 40.0%
TGAGGACCTTGTTGAACTTT+AGG + chr6_2:63122884-63122903 None:intergenic 40.0%
TAAAGTTCAACAAGGTCCTC+AGG - chr6_2:63122883-63122902 Msa0923190:CDS 40.0%
! ATATAGCAAGCACCGTATCA+AGG - chr6_2:63123137-63123156 Msa0923190:CDS 40.0%
TGTTCGAATGGACCTTGATA+CGG + chr6_2:63123152-63123171 None:intergenic 40.0%
CCAAATAACTCCTGTTCGAA+TGG + chr6_2:63123164-63123183 None:intergenic 40.0%
CCATTCGAACAGGAGTTATT+TGG - chr6_2:63123161-63123180 Msa0923190:CDS 40.0%
GGAAATGACATTCTCTATGG+AGG - chr6_2:63123205-63123224 Msa0923190:CDS 40.0%
ATGGAGGTTACAAGATGAGT+TGG - chr6_2:63123221-63123240 Msa0923190:CDS 40.0%
!! GGTTACAAGATGAGTTGGTT+TGG - chr6_2:63123226-63123245 Msa0923190:CDS 40.0%
!! AGTTGGTTTGGAAGAGATTG+TGG - chr6_2:63123238-63123257 Msa0923190:CDS 40.0%
GTTTGGAAGAGATTGTGGAT+TGG - chr6_2:63123243-63123262 Msa0923190:CDS 40.0%
! AAATCTCCTTATTGGCCTGT+TGG - chr6_2:63123378-63123397 Msa0923190:CDS 40.0%
TCTTAACCTGCTTGCTTTCC+GGG + chr6_2:63120199-63120218 None:intergenic 45.0%
!! AAAGTACCGCATCTGTTTGG+TGG - chr6_2:63120237-63120256 Msa0923190:CDS 45.0%
! AAGTACCGCATCTGTTTGGT+GGG - chr6_2:63120238-63120257 Msa0923190:CDS 45.0%
TCTATCCCACCAAACAGATG+CGG + chr6_2:63120246-63120265 None:intergenic 45.0%
ACCCTATTCGAACTTGGAGA+AGG - chr6_2:63120297-63120316 Msa0923190:intron 45.0%
ATGTATCAACCGCCAGTGAA+GGG - chr6_2:63120425-63120444 Msa0923190:CDS 45.0%
TCAGTATATCCACCCTTCAC+TGG + chr6_2:63120440-63120459 None:intergenic 45.0%
GAAGGGTGGATATACTGAAG+AGG - chr6_2:63120442-63120461 Msa0923190:CDS 45.0%
GATGATGCATATGCTCGGAA+AGG - chr6_2:63120821-63120840 Msa0923190:CDS 45.0%
CAACTCAGCCTCAACTGAAT+CGG + chr6_2:63120855-63120874 None:intergenic 45.0%
GAGGCTGAGTTGCATATTCA+AGG - chr6_2:63120863-63120882 Msa0923190:CDS 45.0%
AGTTCAGACTGTGATTGGGA+TGG - chr6_2:63120914-63120933 Msa0923190:CDS 45.0%
TGGTCTGGTGCAAAAACCAT+CGG - chr6_2:63120985-63121004 Msa0923190:CDS 45.0%
!! TGTTGATTTGCGGTAGCAAG+TGG + chr6_2:63121365-63121384 None:intergenic 45.0%
CTTCCTCGAATTCAGATGAC+TGG + chr6_2:63121452-63121471 None:intergenic 45.0%
! TCTGAATTCGAGGAAGTGCA+AGG - chr6_2:63121456-63121475 Msa0923190:CDS 45.0%
! GTCGATTTCCTTCCTAGTGA+TGG - chr6_2:63121530-63121549 Msa0923190:CDS 45.0%
CATCTGCAGAAAGATCAGGA+AGG + chr6_2:63121689-63121708 None:intergenic 45.0%
TGGAGAAGATAGACTACAGC+TGG - chr6_2:63121983-63122002 Msa0923190:CDS 45.0%
AAATCTGACATGGGAGAAGG+CGG - chr6_2:63122226-63122245 Msa0923190:intron 45.0%
! TATATACTTCTGGAGACGGC+TGG + chr6_2:63122252-63122271 None:intergenic 45.0%
TCAAGCACAATGCAACTACC+TGG - chr6_2:63122437-63122456 Msa0923190:intron 45.0%
TCATTAAAGACCATACCGGC+TGG - chr6_2:63122515-63122534 Msa0923190:intron 45.0%
! ATCTGAAATTCCAGCCGGTA+TGG + chr6_2:63122528-63122547 None:intergenic 45.0%
! ATACCGGCTGGAATTTCAGA+TGG - chr6_2:63122527-63122546 Msa0923190:intron 45.0%
! ACTCCATCTGAAATTCCAGC+CGG + chr6_2:63122533-63122552 None:intergenic 45.0%
! GGAGTATTCGATGTAGTACC+TGG - chr6_2:63122548-63122567 Msa0923190:intron 45.0%
CCTCCTAATTCAAGTGAAGC+TGG + chr6_2:63122665-63122684 None:intergenic 45.0%
CCAGCTTCACTTGAATTAGG+AGG - chr6_2:63122662-63122681 Msa0923190:CDS 45.0%
AAAGCAAGAGTTTGGGCTGT+TGG - chr6_2:63122845-63122864 Msa0923190:CDS 45.0%
AATTGCCTCTTGTCAACCTG+AGG + chr6_2:63122902-63122921 None:intergenic 45.0%
GATGTAGCAACTCTTTCGAC+AGG - chr6_2:63122959-63122978 Msa0923190:CDS 45.0%
! CTCAAGTTGTGTTGTACGCA+TGG + chr6_2:63123050-63123069 None:intergenic 45.0%
CATGCGTACAACACAACTTG+AGG - chr6_2:63123048-63123067 Msa0923190:CDS 45.0%
GTATCAAGGTCCATTCGAAC+AGG - chr6_2:63123151-63123170 Msa0923190:CDS 45.0%
CTAACTCCAACAGGCCAATA+AGG + chr6_2:63123387-63123406 None:intergenic 45.0%
! TATTGGCCTGTTGGAGTTAG+TGG - chr6_2:63123387-63123406 Msa0923190:CDS 45.0%
CGATTACCACTAACTCCAAC+AGG + chr6_2:63123396-63123415 None:intergenic 45.0%
GATGTATCAACCGCCAGTGA+AGG - chr6_2:63120424-63120443 Msa0923190:CDS 50.0%
GTATATCCACCCTTCACTGG+CGG + chr6_2:63120437-63120456 None:intergenic 50.0%
GGGTGGATATACTGAAGAGG+CGG - chr6_2:63120445-63120464 Msa0923190:CDS 50.0%
TGAGGCTAGTGACTGTGTTC+TGG - chr6_2:63120622-63120641 Msa0923190:CDS 50.0%
! TGACTGTGTTCTGGCTGAAG+TGG - chr6_2:63120631-63120650 Msa0923190:CDS 50.0%
GGTCTGGTGCAAAAACCATC+GGG - chr6_2:63120986-63121005 Msa0923190:CDS 50.0%
AGTTGTATAGGAGAGCCCGA+TGG + chr6_2:63121004-63121023 None:intergenic 50.0%
AGAATGTGTCGCAACCAAGG+AGG - chr6_2:63121214-63121233 Msa0923190:CDS 50.0%
TTCTTCTGCTGCTACCTCCT+TGG + chr6_2:63121231-63121250 None:intergenic 50.0%
GACGAACTTAGCGAAACTGC+AGG + chr6_2:63121507-63121526 None:intergenic 50.0%
TGGACACTCCATCACTAGGA+AGG + chr6_2:63121541-63121560 None:intergenic 50.0%
! CTAGTGATGGAGTGTCCATC+CGG - chr6_2:63121543-63121562 Msa0923190:CDS 50.0%
ACAATATTCCACGGCACCCA+TGG + chr6_2:63121585-63121604 None:intergenic 50.0%
!! GTTGGAAGTGTCCATATCCC+TGG - chr6_2:63121801-63121820 Msa0923190:CDS 50.0%
! TTTGGTGCAACTGCAGGAAC+TGG - chr6_2:63122572-63122591 Msa0923190:intron 50.0%
TGCAACTGCAGGAACTGGTA+AGG - chr6_2:63122577-63122596 Msa0923190:intron 50.0%
!! AAGGTCCTCAGGTTGACAAG+AGG - chr6_2:63122894-63122913 Msa0923190:CDS 50.0%
ACGCATGGCCTCCTTAACAT+TGG + chr6_2:63123035-63123054 None:intergenic 50.0%
TCAATGTGACGGCTGTGATG+CGG + chr6_2:63123435-63123454 None:intergenic 50.0%
CAGCCGTCACATTGAACTCA+AGG - chr6_2:63123440-63123459 Msa0923190:CDS 50.0%
TTTCGACGTCATGGACGTCC+CGG - chr6_2:63120178-63120197 Msa0923190:CDS 55.0%
! ACTGGCGGTTGATACATCCG+TGG + chr6_2:63120422-63120441 None:intergenic 55.0%
TATCAACCGCCAGTGAAGGG+TGG - chr6_2:63120428-63120447 Msa0923190:CDS 55.0%
! TCATCGTTGTCTGGTGGGTC+TGG + chr6_2:63121320-63121339 None:intergenic 55.0%
CGGATGGACACTCCATCACT+AGG + chr6_2:63121545-63121564 None:intergenic 55.0%
CCTGCAGTTGCACCAAATCC+AGG + chr6_2:63122569-63122588 None:intergenic 55.0%
!! CCTGGATTTGGTGCAACTGC+AGG - chr6_2:63122566-63122585 Msa0923190:intron 55.0%
GGAAGCAACTCTCGTCGCCA+CGG - chr6_2:63120402-63120421 Msa0923190:CDS 60.0%
GGAGAGGGAACTGAGTCCGA+TGG + chr6_2:63121290-63121309 None:intergenic 60.0%
! TTGTCTGGTGGGTCTGGTGG+TGG + chr6_2:63121314-63121333 None:intergenic 60.0%
! TCGTTGTCTGGTGGGTCTGG+TGG + chr6_2:63121317-63121336 None:intergenic 60.0%
CCAGGCTTCTTGCTGGCCAT+GGG - chr6_2:63121566-63121585 Msa0923190:CDS 60.0%
! TGATGCGGCGGTTTTGCTGG+CGG + chr6_2:63123420-63123439 None:intergenic 60.0%
! CTGTGATGCGGCGGTTTTGC+TGG + chr6_2:63123423-63123442 None:intergenic 60.0%
ATGTGACGGCTGTGATGCGG+CGG + chr6_2:63123432-63123451 None:intergenic 60.0%
GGACGTCCCGGAAAGCAAGC+AGG - chr6_2:63120190-63120209 Msa0923190:CDS 65.0%
!! TCTGGTGGGTCTGGTGGTGG+CGG + chr6_2:63121311-63121330 None:intergenic 65.0%
! GATGGAGTGTCCATCCGGCC+AGG - chr6_2:63121548-63121567 Msa0923190:CDS 65.0%
CAGCAAGAAGCCTGGCCGGA+TGG + chr6_2:63121561-63121580 None:intergenic 65.0%
CATCCGGCCAGGCTTCTTGC+TGG - chr6_2:63121559-63121578 Msa0923190:CDS 65.0%
TGGCCAGCAAGAAGCCTGGC+CGG + chr6_2:63121565-63121584 None:intergenic 65.0%
GCCAGGCTTCTTGCTGGCCA+TGG - chr6_2:63121565-63121584 Msa0923190:CDS 65.0%
CCCATGGCCAGCAAGAAGCC+TGG + chr6_2:63121569-63121588 None:intergenic 65.0%
!! GGGTCTGGTGGTGGCGGAGA+GGG + chr6_2:63121305-63121324 None:intergenic 70.0%
!! TGGGTCTGGTGGTGGCGGAG+AGG + chr6_2:63121306-63121325 None:intergenic 70.0%
! CTTGCTGGCCATGGGTGCCG+TGG - chr6_2:63121574-63121593 Msa0923190:CDS 70.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 63120131 63123470 63120131 ID=Msa0923190;Name=Msa0923190
chr6_2 mRNA 63120131 63123470 63120131 ID=Msa0923190-mRNA-1;Parent=Msa0923190;Name=Msa0923190-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0|0|0.66|0.5|0.33|3|0|939
chr6_2 exon 63122610 63123470 63122610 ID=Msa0923190-mRNA-1:exon:9832;Parent=Msa0923190-mRNA-1
chr6_2 exon 63120325 63122148 63120325 ID=Msa0923190-mRNA-1:exon:9831;Parent=Msa0923190-mRNA-1
chr6_2 exon 63120131 63120262 63120131 ID=Msa0923190-mRNA-1:exon:9830;Parent=Msa0923190-mRNA-1
chr6_2 CDS 63122610 63123470 63122610 ID=Msa0923190-mRNA-1:cds;Parent=Msa0923190-mRNA-1
chr6_2 CDS 63120325 63122148 63120325 ID=Msa0923190-mRNA-1:cds;Parent=Msa0923190-mRNA-1
chr6_2 CDS 63120131 63120262 63120131 ID=Msa0923190-mRNA-1:cds;Parent=Msa0923190-mRNA-1
Gene Sequence

>Msa0923190

ATGGATGTAGAAGAATTTTTGGATTGGGTGATTGATGTTGATAGATTTTTCGACGTCATGGACGTCCCGGAAAGCAAGCAGGTTAAGATGATTGCGAACAAACTGAAAAGTACCGCATCTGTTTGGTGGGATAGACTCGTTGTTCAGAGACAGAGACAAAGAAAGAACCCTATTCGAACTTGGAGAAGGATGAAGCAGTTGATGCATGAAAGATTTAACTCTCGCGGTAGATTGTCTCTCTCGCCGCTTGTTTCAATTGAAAAATTGGAGAGGAAGCAACTCTCGTCGCCACGGATGTATCAACCGCCAGTGAAGGGTGGATATACTGAAGAGGCGGATCATATCATTAATGAAGCCGATTTTCATAATTCAACATACTTGTTATCAATGGAGACAACACAAAATGAATCATATGCTCATCAAACCGAGAACGATGTAATTGGTTGCTCCTTGCAAAATAATGGGAAGCATATTGGTGTAGATTTGCATCATGAGGCTAGTGACTGTGTTCTGGCTGAAGTGGATGACAAAAGAGAGGAACAAAAGCATTTGAAACGAACAGATCAAGAAAACTTGATACTTAATGATCATTGCTTGGCATCAGATAATTGTGGTAGTCCTGGTTATGATCCTACACTTTATGGTGATGAGGATAACACACTTTTGGAATTGTCTGGTGAAGTTGTATCAGATGATGCATATGCTCGGAAAGGTTATATATCCGATTCAGTTGAGGCTGAGTTGCATATTCAAGGAACAAGTCTGATCAATCGAAAGGGTGAAAGTTCAGACTGTGATTGGGATGGTATAATTCCCAATTATGCTAATATGTTAATTGAAGCAGAAGCTTTTAATGGTCTGTCATCTGAATTCGAGGAAGTGCAAGGTAACAATTATCATGACGACAACAATCCTGCAGTTTCGCTAAGTTCGTCGTCGTCGATTTCCTTCCTAGTGATGGAGTGTCCATCCGGCCAGGCTTCTTGCTGGCCATGGGTGCCGTGGAATATTGTTTGTTATAGAGGTGTATTGAAGGCTGATTTAATTGCGGCGCGAATAAGTCCATTGAGCATAAAAATAGATGTGCACAGAGACCTTCCTGATCTTTCTGCAGATGTTATATCAAGGACTGTTTTTAGTAGCAGTTTTGAAGAGGGCAAACATATTTTCAAATTACAAGAGCGACAGATGCATCTTTTCTCACAAGCAGTTGGAAGTGTCCATATCCCTGGATTTAGCTATTTGTCAACTAAGAAGAACAAAGATAGGTGGAGACTAGATAAACAGACACGTGAATCAATTTGCAAACTGATTGAAACCAAGAGGAGTGTTAAAGAAAATACAAAAAATGTACTAAATTCATTAATGAGTTTCTACAAGAATGAAGTTGGTGGAGAAGATAGACTACAGCTGGATGAAATTATTGATGAATGTAAAACCTACTTTGCTGGAAAAGATACAACATCTAACCTGTTAACTTTGGCACTTCTTCTATTAGCAAAATATGAAGAATGGCAAAGTAAGACACGTGAAGAAATTGATGGGAGTACTAGAGAAGCAATTGAAAAGAGGGTTAATCAATTAGGCATTGACAAGGCTGTACCGAAAAAGATTCTTGAACTGATGAATGTTGAAAATCTGACATGGGAGAAGGCGGCCAGCCGTCTCCAGAAGTATATACTCTATCTAAAAAGAGTTAGTTGTGTGGAAAACAAACAAGGTCATATGGCAGCAGCCTTAACTAGTAGTTCAGATGCATCCTATTTAAGAAGTGTAGTTGGAGGACATTTGCATACATTGAATCACTCTACTTTACTTGAAAACAGAAGGTGCAATGGTATTTGGTCAAGCACAATGCAACTACCTGGAACAAACACTTATCTTCCAAGAGAATCTATTAACCGTGCTGCTATTAAGGAGAGTTCATTAAAGACCATACCGGCTGGAATTTCAGATGGAGTATTCGATGTAGTACCTGGATTTGGTGCAACTGCAGGAACTGGTAAGGTTAGCTTTACTGGTTCAACAAGACGTGAAATAATGGTATCTGCAGCTAGAAGTAATTTGAAACCAGCTTCACTTGAATTAGGAGGAAAATCACCCCTCTTAATTTTTTATAATGCTGATGTTGATAAAGCTGCTAAACTTGCTCTCATTAGCATCGTATTTAACAAGGGAGAAATTTGTGTTGCGGGTTTTCGTGTGTTTGTTCAAGAAGGAATCTATGATGAATTTGAGAAGAAGTTAGTGGACAAAGCAAGAGTTTGGGCTGTTGGTGATCCTTTTGATCCTAAAGTTCAACAAGGTCCTCAGGTTGACAAGAGGCAATTTAAAAAAATTATTTCATATATTGAGCATGGAAAGAAAGATGTAGCAACTCTTTCGACAGGTAGTAAAAAAATTGGAGACAAGAGTTACTACAATGAGCCTACAATTTTCTCCAATGTTAAGGAGGCCATGCGTACAACACAACTTGAGGAAGCAATCAAAAGTGTCAACAATAAAAGATATGGCTTAGCAGCAGTAACTGTGACAAAGAATTTGGATATAGCAAGCACCGTATCAAGGTCCATTCGAACAGGAGTTATTTGGATTAATTGCTACTTTGCCTTTGGAAATGACATTCTCTATGGAGGTTACAAGATGAGTTGGTTTGGAAGAGATTGTGGATTGGTTGTTGATCAAGCTGATCCGTCTATTCTTCAACGATTAGATGCTGAAACTAAATCTCCTTATTGGCCTGTTGGAGTTAGTGGTAATCGACCGCCAGCAAAACCGCCGCATCACAGCCGTCACATTGAACTCAAGGAATTGCAT
Protein sequence

>Msa0923190

MDVEEFLDWVIDVDRFFDVMDVPESKQVKMIANKLKSTASVWWDRLVVQRQRQRKNPIRTWRRMKQLMHERFNSRGRLSLSPLVSIEKLERKQLSSPRMYQPPVKGGYTEEADHIINEADFHNSTYLLSMETTQNESYAHQTENDVIGCSLQNNGKHIGVDLHHEASDCVLAEVDDKREEQKHLKRTDQENLILNDHCLASDNCGSPGYDPTLYGDEDNTLLELSGEVVSDDAYARKGYISDSVEAELHIQGTSLINRKGESSDCDWDGIIPNYANMLIEAEAFNGLSSEFEEVQGNNYHDDNNPAVSLSSSSSISFLVMECPSGQASCWPWVPWNIVCYRGVLKADLIAARISPLSIKIDVHRDLPDLSADVISRTVFSSSFEEGKHIFKLQERQMHLFSQAVGSVHIPGFSYLSTKKNKDRWRLDKQTRESICKLIETKRSVKENTKNVLNSLMSFYKNEVGGEDRLQLDEIIDECKTYFAGKDTTSNLLTLALLLLAKYEEWQSKTREEIDGSTREAIEKRVNQLGIDKAVPKKILELMNVENLTWEKAASRLQKYILYLKRVSCVENKQGHMAAALTSSSDASYLRSVVGGHLHTLNHSTLLENRRCNGIWSSTMQLPGTNTYLPRESINRAAIKESSLKTIPAGISDGVFDVVPGFGATAGTGKVSFTGSTRREIMVSAARSNLKPASLELGGKSPLLIFYNADVDKAAKLALISIVFNKGEICVAGFRVFVQEGIYDEFEKKLVDKARVWAVGDPFDPKVQQGPQVDKRQFKKIISYIEHGKKDVATLSTGSKKIGDKSYYNEPTIFSNVKEAMRTTQLEEAIKSVNNKRYGLAAVTVTKNLDIASTVSRSIRTGVIWINCYFAFGNDILYGGYKMSWFGRDCGLVVDQADPSILQRLDAETKSPYWPVGVSGNRPPAKPPHHSRHIELKELH