AlfalfaGEDB | Msa0923750

M. sativa cultivar zhongmu-4 / Msa0923750

KEGG: K20538
GO: GO:0000165 GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004707 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009611 GO:0009636 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009753 GO:0009755 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0923750	XP_013452897.1	97.561	574	10	2	1	571	1	573	0.0	1152

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0923750	sp\|Q9LV37\|MPK9_ARATH	81.213	511	84	6	64	566	1	507	0.0	825

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0923750	MtrunA17_Chr6g0482681	97.561	574	10	2	1	571	1	573	0.0	1152
Msa0923750	MtrunA17_Chr8g0392811	81.544	531	89	5	47	571	78	605	0.0	879
Msa0923750	MtrunA17_Chr4g0065851	80.660	424	81	1	65	488	4	426	0.0	731
Msa0923750	MtrunA17_Chr2g0287271	73.237	482	116	5	63	533	2	481	0.0	726
Msa0923750	MtrunA17_Chr3g0096631	78.261	414	89	1	65	478	4	416	0.0	689
Msa0923750	MtrunA17_Chr2g0314321	72.622	431	101	1	65	478	4	434	0.0	656
Msa0923750	MtrunA17_Chr8g0359091	74.576	413	99	2	69	478	9	418	0.0	650
Msa0923750	MtrunA17_Chr5g0443351	74.453	411	100	1	68	478	4	409	0.0	647
Msa0923750	MtrunA17_Chr4g0030231	50.595	336	159	3	92	427	46	374	1.61e-117	353
Msa0923750	MtrunA17_Chr8g0387401	47.154	369	183	5	62	425	23	384	3.16e-117	352

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0923750	AT3G18040.4	79.284	531	95	7	44	566	93	616	833
Msa0923750	AT3G18040.1	81.213	511	84	6	64	566	1	507	825
Msa0923750	AT3G18040.3	75.943	557	96	8	44	566	93	645	825
Msa0923750	AT3G18040.5	81.548	504	81	6	71	566	3	502	821
Msa0923750	AT1G73670.1	71.795	585	139	10	1	570	1	574	820
Msa0923750	AT1G18150.3	71.597	595	130	9	1	566	1	585	795
Msa0923750	AT1G18150.2	71.597	595	130	9	1	566	1	585	795
Msa0923750	AT1G18150.1	71.597	595	130	9	1	566	1	585	795
Msa0923750	AT5G19010.1	71.667	480	128	2	65	536	4	483	721
Msa0923750	AT2G42880.1	79.710	414	84	0	65	478	4	417	702

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Find 137 sgRNAs with CRISPR-Local

Find 456 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAGTAGGATTGAATT+AGG	0.345152	6_2:+64498346	None:intergenic
AAAAGGAAGTTACGGTGTAG+TGG	0.574618	6_2:-64503430	Msa0923750:CDS
AAACAAGCTTCATGTATCCA+AGG	0.583069	6_2:-64501222	Msa0923750:intron
AAATCAATGTATGCAATGTT+GGG	0.510990	6_2:-64504788	Msa0923750:five_prime_UTR
AAGATATTCTTGGAGCATCT+GGG	0.511756	6_2:+64501258	None:intergenic
AAGGAAGTGTATATGGGTGG+TGG	0.523145	6_2:-64504738	Msa0923750:exon
AATCAGTCATGAGGTCTAAC+TGG	0.427585	6_2:+64502275	None:intergenic
AATCATTGTTTGAATGAAGA+GGG	0.549074	6_2:+64504637	None:intergenic
AATGATAGCTTAAAACAATG+TGG	0.670414	6_2:+64498246	None:intergenic
AATGATTGTGAAAAGCCAGC+GGG	0.586641	6_2:-64499308	Msa0923750:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAAATCAATGTATGCAATGT+TGG	-	chr6_2:64498108-64498127	Msa0923750:three_prime_UTR	30.0%
GTGATGAGAGTTAATAGAAA+TGG	+	chr6_2:64498226-64498245	None:intergenic	30.0%
GAATCATTGTTTGAATGAAG+AGG	+	chr6_2:64498264-64498283	None:intergenic	30.0%
TTTGTAGTTTACCTCATTTG+GGG	-	chr6_2:64498623-64498642	Msa0923750:intron	30.0%
AAAACAAACACAAAAAGGGT+TGG	+	chr6_2:64498682-64498701	None:intergenic	30.0%
CCCAAAAAACAAACACAAAA+AGG	+	chr6_2:64498687-64498706	None:intergenic	30.0%
GTCATTGTTAGAAATTACCA+TGG	-	chr6_2:64499066-64499085	Msa0923750:intron	30.0%
GAGAAAATAAATCAAAGCCA+TGG	+	chr6_2:64499086-64499105	None:intergenic	30.0%
CTCATTAATGGCTTATCTTA+AGG	-	chr6_2:64499103-64499122	Msa0923750:intron	30.0%
TTCTGACTTTGATGTACAAT+CGG	-	chr6_2:64499162-64499181	Msa0923750:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_2	gene	64498042	64504877	64498042	ID=Msa0923750;Name=Msa0923750
chr6_2	mRNA	64498042	64504877	64498042	ID=Msa0923750-mRNA-1;Parent=Msa0923750;Name=Msa0923750-mRNA-1;_AED=0.14;_eAED=0.14;_QI=129\|1\|1\|1\|1\|1\|11\|366\|571
chr6_2	exon	64498042	64498488	64498042	ID=Msa0923750-mRNA-1:exon:10169;Parent=Msa0923750-mRNA-1
chr6_2	exon	64499160	64499370	64499160	ID=Msa0923750-mRNA-1:exon:10168;Parent=Msa0923750-mRNA-1
chr6_2	exon	64499558	64499659	64499558	ID=Msa0923750-mRNA-1:exon:10167;Parent=Msa0923750-mRNA-1
chr6_2	exon	64501223	64501296	64501223	ID=Msa0923750-mRNA-1:exon:10166;Parent=Msa0923750-mRNA-1
chr6_2	exon	64501387	64501524	64501387	ID=Msa0923750-mRNA-1:exon:10165;Parent=Msa0923750-mRNA-1
chr6_2	exon	64501635	64501790	64501635	ID=Msa0923750-mRNA-1:exon:10164;Parent=Msa0923750-mRNA-1
chr6_2	exon	64502240	64502389	64502240	ID=Msa0923750-mRNA-1:exon:10163;Parent=Msa0923750-mRNA-1
chr6_2	exon	64502754	64502813	64502754	ID=Msa0923750-mRNA-1:exon:10162;Parent=Msa0923750-mRNA-1
chr6_2	exon	64502917	64503044	64502917	ID=Msa0923750-mRNA-1:exon:10161;Parent=Msa0923750-mRNA-1
chr6_2	exon	64503115	64503523	64503115	ID=Msa0923750-mRNA-1:exon:10160;Parent=Msa0923750-mRNA-1
chr6_2	exon	64504542	64504877	64504542	ID=Msa0923750-mRNA-1:exon:10159;Parent=Msa0923750-mRNA-1
chr6_2	five_prime_UTR	64504749	64504877	64504749	ID=Msa0923750-mRNA-1:five_prime_utr;Parent=Msa0923750-mRNA-1
chr6_2	CDS	64504542	64504748	64504542	ID=Msa0923750-mRNA-1:cds;Parent=Msa0923750-mRNA-1
chr6_2	CDS	64503115	64503523	64503115	ID=Msa0923750-mRNA-1:cds;Parent=Msa0923750-mRNA-1
chr6_2	CDS	64502917	64503044	64502917	ID=Msa0923750-mRNA-1:cds;Parent=Msa0923750-mRNA-1
chr6_2	CDS	64502754	64502813	64502754	ID=Msa0923750-mRNA-1:cds;Parent=Msa0923750-mRNA-1
chr6_2	CDS	64502240	64502389	64502240	ID=Msa0923750-mRNA-1:cds;Parent=Msa0923750-mRNA-1
chr6_2	CDS	64501635	64501790	64501635	ID=Msa0923750-mRNA-1:cds;Parent=Msa0923750-mRNA-1
chr6_2	CDS	64501387	64501524	64501387	ID=Msa0923750-mRNA-1:cds;Parent=Msa0923750-mRNA-1
chr6_2	CDS	64501223	64501296	64501223	ID=Msa0923750-mRNA-1:cds;Parent=Msa0923750-mRNA-1
chr6_2	CDS	64499558	64499659	64499558	ID=Msa0923750-mRNA-1:cds;Parent=Msa0923750-mRNA-1
chr6_2	CDS	64499160	64499370	64499160	ID=Msa0923750-mRNA-1:cds;Parent=Msa0923750-mRNA-1
chr6_2	CDS	64498408	64498488	64498408	ID=Msa0923750-mRNA-1:cds;Parent=Msa0923750-mRNA-1
chr6_2	three_prime_UTR	64498042	64498407	64498042	ID=Msa0923750-mRNA-1:three_prime_utr;Parent=Msa0923750-mRNA-1

Gene Sequence

>Msa0923750

ATGGGTGGTGGAGGTAAACTCGTTCATGCCATTCGTCGATTCATTCATCGTACCATTTCTATTAACTCTCATCACAACAATGCCAATCACCCTCTTCATTCAAACAATGATTCCAACAACATTAACAACGACCCTTCTTCTTTAAATCTTCTCAAAGTTCCTACACGTTCCCTTTTCATACCTTCTTCAATGGATCGTCTCAAAAAGGGTGCAGGAGAGGTAGAATTTTTTACGGAGTATGGAGAGGCAAGTCGGTACCAAGTCCAAGAAGTGGTTGGAAAAGGAAGTTACGGTGTAGTGGTTTCTGCCGTGGATACTATTACTGGGGAAAAAGTTGCAATTAAAAAAATCAATGATGTTTTTGAGCATGTATCAGATGCCACACGGATACTAAGAGAAATTAAACTCCTTCGTTTGCTACGACATCCTGATATAGTAGAAATTAAACATATAATGCTTCCTCCTTCACGAAGAGAGTTCAAGGATGTCTATGTCGTGTTTGAGTTAATGGAGTCTGACCTTCATCAAGTAATTAAAGCAAATGACGATCTTACTCCTGAGCACTATCAATTTTTCTTGTACCAACTTCTTCGGGGCCTGAAATATACACATACAGCGAATGTGTTTCACCGTGATTTGAAGCCAAAAAATATTCTAGCCAATGCTGATTGCAAACTAAAAATATGTGATTTTGGGCTTGCTCGTGTTTCCTTCAATGATGCTCCGTCAGCTATATTCTGGACCGACTATGTTGCGACTCGGTGGTATCGTGCACCTGAACTATGCGGTTCTTTTTTCTCAAAATATACTCCAGCAATTGATATTTGGAGCATTGGATGCATATTTGCAGAAATGCTTAGTGGCAAGCCATTGTTTCCTGGGAAAAATGTGGTGCACCAGTTAGACCTCATGACTGATTTGCTTGGTACTCCTCCTGCTGAATCCATTTCGAAGATTCGAAATGAGAAAGCTAGAAGGTACCTTAGTAGTATGCGAAAAAAGCAACCAGTTCCATTCACCAAAAAATTTCCAAATGTAGATCCATTGGCTCTTAATTTGCTGGAGCGTTTACTTGCATTTGACCCTAAAGACCGTCCTACAGCCGAAGAGGCACTATCTGATCCCTACTTTCACGGTTTGTCAAATGTTGACCGTGAACCGTCCACTCAAGCAATTTCAAAACTTGAGTTTGAATTTGAGAGAAGAAAATTGACCAAAGATGATGTTAGAGAGCTGATTTATCGAGAGATTTTAGAGTATCATCCCCAGATGCTCCAAGAATATCTTAGTGGTGGAGATCAAACAAGCTTCATGTATCCAAGTGGGGTTGATCGGTTCAAACGACAGTTTGCACATCTTGAGGATAATTATGGGAAAGGTGAACGAGGCTCTCCATTGCTGAGACAACATGCCTCCTTACCTAGAGAGCGGGTTCCTGCTCCCAAGGATGAAAATAATCAAAATAATGATTGTGAAAAGCCAGCGGGATTAAATCTTCATAGCCCTCCTGGTGCAACAAACTCAGGTGATGCAGATGCACAAAATGGACCGTCAAACATGACACGATGTCTGTTGAAGAGTGCCAGCATTAGTGGTTCAAAATGTATAGATGTCAAACAAAGTAAAGATCCCGAGGAGGAGGCAATTCCAGAGACCAATGATGAAGCGGTGGACGAGTTGACAGAGAAAGTTGCTGCTGCTGCTCTGCATGCTTAG

Protein sequence

>Msa0923750

MGGGGKLVHAIRRFIHRTISINSHHNNANHPLHSNNDSNNINNDPSSLNLLKVPTRSLFIPSSMDRLKKGAGEVEFFTEYGEASRYQVQEVVGKGSYGVVVSAVDTITGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFKDVYVVFELMESDLHQVIKANDDLTPEHYQFFLYQLLRGLKYTHTANVFHRDLKPKNILANADCKLKICDFGLARVSFNDAPSAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEMLSGKPLFPGKNVVHQLDLMTDLLGTPPAESISKIRNEKARRYLSSMRKKQPVPFTKKFPNVDPLALNLLERLLAFDPKDRPTAEEALSDPYFHGLSNVDREPSTQAISKLEFEFERRKLTKDDVRELIYREILEYHPQMLQEYLSGGDQTSFMYPSGVDRFKRQFAHLEDNYGKGERGSPLLRQHASLPRERVPAPKDENNQNNDCEKPAGLNLHSPPGATNSGDADAQNGPSNMTRCLLKSASISGSKCIDVKQSKDPEEEAIPETNDEAVDELTEKVAAAALHA*