Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0923880 | XP_024630857.2 | 90.323 | 93 | 9 | 0 | 115 | 207 | 2 | 94 | 9.30e-45 | 172 |
| Msa0923880 | XP_024630857.2 | 95.968 | 124 | 5 | 0 | 213 | 336 | 427 | 550 | 1.76e-75 | 254 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0923880 | sp|Q9SSQ4|FRS6_ARATH | 54.386 | 57 | 25 | 1 | 221 | 277 | 584 | 639 | 1.43e-11 | 68.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0923880 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0923880 | MtrunA17_Chr6g0476441 | 73.333 | 120 | 32 | 0 | 216 | 335 | 1 | 120 | 7.62e-59 | 191 |
| Msa0923880 | MtrunA17_Chr2g0296781 | 73.171 | 123 | 33 | 0 | 213 | 335 | 493 | 615 | 1.31e-56 | 195 |
| Msa0923880 | MtrunA17_Chr2g0296781 | 60.870 | 161 | 55 | 2 | 54 | 207 | 1 | 160 | 7.67e-56 | 193 |
| Msa0923880 | MtrunA17_Chr6g0477261 | 72.358 | 123 | 34 | 0 | 213 | 335 | 382 | 504 | 5.85e-55 | 190 |
| Msa0923880 | MtrunA17_Chr6g0477261 | 75.510 | 49 | 12 | 0 | 159 | 207 | 1 | 49 | 2.67e-16 | 79.7 |
| Msa0923880 | MtrunA17_Chr1g0196541 | 70.000 | 110 | 27 | 1 | 225 | 334 | 505 | 608 | 2.58e-45 | 164 |
| Msa0923880 | MtrunA17_Chr1g0196541 | 48.447 | 161 | 75 | 2 | 54 | 207 | 1 | 160 | 1.56e-37 | 142 |
| Msa0923880 | MtrunA17_Chr6g0476431 | 50.000 | 86 | 36 | 1 | 54 | 132 | 1 | 86 | 4.65e-21 | 86.3 |
| Msa0923880 | MtrunA17_Chr5g0441581 | 31.977 | 172 | 95 | 3 | 44 | 202 | 21 | 183 | 7.85e-17 | 81.6 |
| Msa0923880 | MtrunA17_Chr5g0441581 | 39.252 | 107 | 63 | 2 | 217 | 323 | 525 | 629 | 9.18e-17 | 81.3 |
| Msa0923880 | MtrunA17_Chr6g0451441 | 28.415 | 183 | 108 | 6 | 40 | 202 | 65 | 244 | 5.61e-14 | 72.4 |
| Msa0923880 | MtrunA17_Chr1g0172041 | 36.905 | 84 | 52 | 1 | 214 | 297 | 27 | 109 | 2.21e-13 | 65.9 |
| Msa0923880 | MtrunA17_Chr2g0291581 | 51.613 | 62 | 27 | 2 | 216 | 277 | 564 | 622 | 1.16e-11 | 65.9 |
| Msa0923880 | MtrunA17_Chr5g0440451 | 39.024 | 82 | 49 | 1 | 221 | 302 | 550 | 630 | 6.32e-11 | 63.5 |
| Msa0923880 | MtrunA17_Chr5g0448761 | 26.257 | 179 | 109 | 4 | 42 | 201 | 52 | 226 | 7.63e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0923880 | AT1G52520.1 | 54.386 | 57 | 25 | 1 | 221 | 277 | 584 | 639 | 1.45e-12 | 68.9 |
| Msa0923880 | AT4G19990.6 | 48.276 | 58 | 29 | 1 | 221 | 278 | 505 | 561 | 3.40e-11 | 64.7 |
| Msa0923880 | AT4G19990.2 | 48.276 | 58 | 29 | 1 | 221 | 278 | 505 | 561 | 3.40e-11 | 64.7 |
| Msa0923880 | AT4G19990.3 | 48.276 | 58 | 29 | 1 | 221 | 278 | 505 | 561 | 3.62e-11 | 64.7 |
| Msa0923880 | AT4G19990.4 | 48.276 | 58 | 29 | 1 | 221 | 278 | 505 | 561 | 3.62e-11 | 64.7 |
| Msa0923880 | AT4G19990.5 | 48.276 | 58 | 29 | 1 | 221 | 278 | 505 | 561 | 3.82e-11 | 64.7 |
| Msa0923880 | AT4G19990.1 | 48.276 | 58 | 29 | 1 | 221 | 278 | 448 | 504 | 4.09e-11 | 64.7 |
| Msa0923880 | AT4G19990.7 | 48.276 | 58 | 29 | 1 | 221 | 278 | 519 | 575 | 4.25e-11 | 64.7 |
Find 40 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGCTGTTTATTTGAGTTTA+AGG | 0.126982 | 6_2:+65055859 | Msa0923880:CDS |
| GTCTTTAACTGTATCATAAT+GGG | 0.244282 | 6_2:-65055786 | None:intergenic |
| TGTCTTTAACTGTATCATAA+TGG | 0.286375 | 6_2:-65055787 | None:intergenic |
| TCGAAACTACATTGACATAA+TGG | 0.293583 | 6_2:+65055745 | Msa0923880:CDS |
| TGGAACAACTACTATTTCTA+AGG | 0.304844 | 6_2:+65055526 | Msa0923880:CDS |
| AAGAATTATGCAAGATGTAT+AGG | 0.307421 | 6_2:+65055331 | Msa0923880:CDS |
| TGAAGAAGCAACTTCGTAAA+AGG | 0.325276 | 6_2:-65056065 | None:intergenic |
| CGAAACTACATTGACATAAT+GGG | 0.331049 | 6_2:+65055746 | Msa0923880:CDS |
| TGCTGTTTATTTGAGTTTAA+GGG | 0.334665 | 6_2:+65055860 | Msa0923880:CDS |
| ACGCTGCAACTCTTCATTTC+CGG | 0.353530 | 6_2:-65056023 | None:intergenic |
| TTATTGACCCTAGTATAAAA+AGG | 0.385981 | 6_2:+65055615 | Msa0923880:CDS |
| TAGAATAGAGAACTTAAAAC+TGG | 0.390920 | 6_2:+65056126 | Msa0923880:CDS |
| GGATATGATAACCTTACATT+CGG | 0.409109 | 6_2:+65055710 | Msa0923880:CDS |
| TTAAATTTCATGCCAACCTT+AGG | 0.424975 | 6_2:-65055280 | None:intergenic |
| TTAATATCCTTCCTCCATCT+TGG | 0.438245 | 6_2:-65055959 | None:intergenic |
| CTTGTTATATATTGCCAAGA+TGG | 0.439590 | 6_2:+65055945 | Msa0923880:CDS |
| GATATGATAACCTTACATTC+GGG | 0.457280 | 6_2:+65055711 | Msa0923880:CDS |
| AGATATACACTTATTAAAAG+TGG | 0.483850 | 6_2:+65055986 | Msa0923880:CDS |
| TACTTACATTAATCCCAGCT+TGG | 0.488151 | 6_2:-65055655 | None:intergenic |
| TAGCATGAAAACACACTGTA+AGG | 0.490277 | 6_2:+65055475 | Msa0923880:CDS |
| AGTTAAAGACATAATGTTCA+AGG | 0.493487 | 6_2:+65055799 | Msa0923880:CDS |
| AAATGATTTATCGAAAGTAA+TGG | 0.527562 | 6_2:+65056102 | Msa0923880:CDS |
| TTGGAGGTTAATGACCAAGC+TGG | 0.528235 | 6_2:+65055641 | Msa0923880:CDS |
| TGGAGGTTAATGACCAAGCT+GGG | 0.539674 | 6_2:+65055642 | Msa0923880:CDS |
| TACTCACATAGCTTCTTGCA+CGG | 0.540398 | 6_2:-65055424 | None:intergenic |
| AATGTATGCGTGTCTTCAGA+TGG | 0.540668 | 6_2:+65055506 | Msa0923880:CDS |
| AAATGAAGATGATGAACCTA+AGG | 0.544931 | 6_2:+65055264 | Msa0923880:CDS |
| GAAGATGATGAACCTAAGGT+TGG | 0.554642 | 6_2:+65055268 | Msa0923880:CDS |
| GTTATATATTGCCAAGATGG+AGG | 0.585753 | 6_2:+65055948 | Msa0923880:CDS |
| CATGAAATTTAATTCTGCAG+AGG | 0.587606 | 6_2:+65055291 | Msa0923880:CDS |
| TATATTGCCAAGATGGAGGA+AGG | 0.599926 | 6_2:+65055952 | Msa0923880:CDS |
| TCTTGGCAATATATAACAAG+AGG | 0.613918 | 6_2:-65055942 | None:intergenic |
| GAAACTACATTGACATAATG+GGG | 0.622796 | 6_2:+65055747 | Msa0923880:CDS |
| TCTTTAACTGTATCATAATG+GGG | 0.633435 | 6_2:-65055785 | None:intergenic |
| TCTATGGTTGTTGAAGCAAG+TGG | 0.641961 | 6_2:+65055689 | Msa0923880:CDS |
| CTTGGCAATATATAACAAGA+GGG | 0.647143 | 6_2:-65055941 | None:intergenic |
| TCACATAAACGAAAATTGTG+AGG | 0.663983 | 6_2:+65055228 | Msa0923880:CDS |
| ATATATGGAAGAGACAATCA+CGG | 0.693219 | 6_2:+65054795 | None:intergenic |
| CTGTGAGCTTAAGAACACAA+AGG | 0.694006 | 6_2:-65055901 | None:intergenic |
| ATATGATAACCTTACATTCG+GGG | 0.715139 | 6_2:+65055712 | Msa0923880:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAAGTATTTTACTCTA+GGG | + | chr6_2:65055396-65055415 | Msa0923880:CDS | 15.0% |
| !!! | TTAATGTAAGTAGAAATTTT+CGG | + | chr6_2:65055666-65055685 | Msa0923880:CDS | 15.0% |
| !!! | AAAAAAAGTATTTTACTCTA+GGG | + | chr6_2:65055396-65055415 | Msa0923880:CDS | 15.0% |
| !!! | TTAATGTAAGTAGAAATTTT+CGG | + | chr6_2:65055666-65055685 | Msa0923880:CDS | 15.0% |
| !!! | GGAAATCAAATTTTAATTGA+TGG | - | chr6_2:65055019-65055038 | None:intergenic | 20.0% |
| !! | ATCAACTGAATTAAAAGTAA+AGG | - | chr6_2:65055121-65055140 | None:intergenic | 20.0% |
| !!! | TAAAAAATTTGTTGCATTAG+TGG | + | chr6_2:65055159-65055178 | Msa0923880:intron | 20.0% |
| !!! | GAAAAAAAGTATTTTACTCT+AGG | + | chr6_2:65055395-65055414 | Msa0923880:CDS | 20.0% |
| !!! | ATTTGGCTTTAAAAGATTTT+TGG | - | chr6_2:65055453-65055472 | None:intergenic | 20.0% |
| !! | AGATATACACTTATTAAAAG+TGG | + | chr6_2:65055986-65056005 | Msa0923880:CDS | 20.0% |
| !! | AAATGATTTATCGAAAGTAA+TGG | + | chr6_2:65056102-65056121 | Msa0923880:CDS | 20.0% |
| !!! | GGAAATCAAATTTTAATTGA+TGG | - | chr6_2:65055019-65055038 | None:intergenic | 20.0% |
| !! | ATCAACTGAATTAAAAGTAA+AGG | - | chr6_2:65055121-65055140 | None:intergenic | 20.0% |
| !!! | TAAAAAATTTGTTGCATTAG+TGG | + | chr6_2:65055159-65055178 | Msa0923880:intron | 20.0% |
| !!! | GAAAAAAAGTATTTTACTCT+AGG | + | chr6_2:65055395-65055414 | Msa0923880:CDS | 20.0% |
| !!! | ATTTGGCTTTAAAAGATTTT+TGG | - | chr6_2:65055453-65055472 | None:intergenic | 20.0% |
| !! | AGATATACACTTATTAAAAG+TGG | + | chr6_2:65055986-65056005 | Msa0923880:CDS | 20.0% |
| !! | AAATGATTTATCGAAAGTAA+TGG | + | chr6_2:65056102-65056121 | Msa0923880:CDS | 20.0% |
| ! | AATCAGAACATATAAGGTTA+TGG | - | chr6_2:65054864-65054883 | None:intergenic | 25.0% |
| ! | GAACAAAATCAGAACATATA+AGG | - | chr6_2:65054870-65054889 | None:intergenic | 25.0% |
| !!! | CAAATTTTAATTGATGGTTG+AGG | - | chr6_2:65055013-65055032 | None:intergenic | 25.0% |
| ! | AAGAATTATGCAAGATGTAT+AGG | + | chr6_2:65055331-65055350 | Msa0923880:CDS | 25.0% |
| ! | TAGCATAATCAGTACAAAAA+AGG | + | chr6_2:65055363-65055382 | Msa0923880:intron | 25.0% |
| ! | AGCATAATCAGTACAAAAAA+GGG | + | chr6_2:65055364-65055383 | Msa0923880:intron | 25.0% |
| ! | TTATTGACCCTAGTATAAAA+AGG | + | chr6_2:65055615-65055634 | Msa0923880:CDS | 25.0% |
| ! | TCTTTAACTGTATCATAATG+GGG | - | chr6_2:65055788-65055807 | None:intergenic | 25.0% |
| ! | GTCTTTAACTGTATCATAAT+GGG | - | chr6_2:65055789-65055808 | None:intergenic | 25.0% |
| ! | TGTCTTTAACTGTATCATAA+TGG | - | chr6_2:65055790-65055809 | None:intergenic | 25.0% |
| ! | AGTTAAAGACATAATGTTCA+AGG | + | chr6_2:65055799-65055818 | Msa0923880:CDS | 25.0% |
| !! | ATGCTGTTTATTTGAGTTTA+AGG | + | chr6_2:65055859-65055878 | Msa0923880:CDS | 25.0% |
| !! | TGCTGTTTATTTGAGTTTAA+GGG | + | chr6_2:65055860-65055879 | Msa0923880:CDS | 25.0% |
| !! | TCGATAAATCATTTTCAGTA+TGG | - | chr6_2:65056096-65056115 | None:intergenic | 25.0% |
| ! | TAGAATAGAGAACTTAAAAC+TGG | + | chr6_2:65056126-65056145 | Msa0923880:CDS | 25.0% |
| ! | AATCAGAACATATAAGGTTA+TGG | - | chr6_2:65054864-65054883 | None:intergenic | 25.0% |
| ! | GAACAAAATCAGAACATATA+AGG | - | chr6_2:65054870-65054889 | None:intergenic | 25.0% |
| !!! | CAAATTTTAATTGATGGTTG+AGG | - | chr6_2:65055013-65055032 | None:intergenic | 25.0% |
| ! | AAGAATTATGCAAGATGTAT+AGG | + | chr6_2:65055331-65055350 | Msa0923880:CDS | 25.0% |
| ! | TAGCATAATCAGTACAAAAA+AGG | + | chr6_2:65055363-65055382 | Msa0923880:intron | 25.0% |
| ! | AGCATAATCAGTACAAAAAA+GGG | + | chr6_2:65055364-65055383 | Msa0923880:intron | 25.0% |
| ! | TTATTGACCCTAGTATAAAA+AGG | + | chr6_2:65055615-65055634 | Msa0923880:CDS | 25.0% |
| ! | TCTTTAACTGTATCATAATG+GGG | - | chr6_2:65055788-65055807 | None:intergenic | 25.0% |
| ! | GTCTTTAACTGTATCATAAT+GGG | - | chr6_2:65055789-65055808 | None:intergenic | 25.0% |
| ! | TGTCTTTAACTGTATCATAA+TGG | - | chr6_2:65055790-65055809 | None:intergenic | 25.0% |
| ! | AGTTAAAGACATAATGTTCA+AGG | + | chr6_2:65055799-65055818 | Msa0923880:CDS | 25.0% |
| !! | ATGCTGTTTATTTGAGTTTA+AGG | + | chr6_2:65055859-65055878 | Msa0923880:CDS | 25.0% |
| !! | TGCTGTTTATTTGAGTTTAA+GGG | + | chr6_2:65055860-65055879 | Msa0923880:CDS | 25.0% |
| !! | TCGATAAATCATTTTCAGTA+TGG | - | chr6_2:65056096-65056115 | None:intergenic | 25.0% |
| ! | TAGAATAGAGAACTTAAAAC+TGG | + | chr6_2:65056126-65056145 | Msa0923880:CDS | 25.0% |
| !!! | GTTTTGATTTTGGACAATCA+CGG | + | chr6_2:65054823-65054842 | Msa0923880:CDS | 30.0% |
| AACATATAAGGTTATGGAGA+AGG | - | chr6_2:65054858-65054877 | None:intergenic | 30.0% | |
| !!! | ACGAAATTCAGTTTTGGAAT+CGG | - | chr6_2:65054927-65054946 | None:intergenic | 30.0% |
| TTGAACTGGATGCTAAAATA+GGG | - | chr6_2:65055040-65055059 | None:intergenic | 30.0% | |
| TTTACTATTGTCTCTTGAAC+TGG | - | chr6_2:65055054-65055073 | None:intergenic | 30.0% | |
| TCACATAAACGAAAATTGTG+AGG | + | chr6_2:65055228-65055247 | Msa0923880:CDS | 30.0% | |
| AAATGAAGATGATGAACCTA+AGG | + | chr6_2:65055264-65055283 | Msa0923880:CDS | 30.0% | |
| TTAAATTTCATGCCAACCTT+AGG | - | chr6_2:65055283-65055302 | None:intergenic | 30.0% | |
| CATGAAATTTAATTCTGCAG+AGG | + | chr6_2:65055291-65055310 | Msa0923880:CDS | 30.0% | |
| ! | TATGCAAGATGTATAGGTTT+TGG | + | chr6_2:65055337-65055356 | Msa0923880:intron | 30.0% |
| !! | TGGAACAACTACTATTTCTA+AGG | + | chr6_2:65055526-65055545 | Msa0923880:CDS | 30.0% |
| ! | CCAATCTCCTTTTTATACTA+GGG | - | chr6_2:65055625-65055644 | None:intergenic | 30.0% |
| ! | TCCAATCTCCTTTTTATACT+AGG | - | chr6_2:65055626-65055645 | None:intergenic | 30.0% |
| TAGTATAAAAAGGAGATTGG+AGG | + | chr6_2:65055625-65055644 | Msa0923880:CDS | 30.0% | |
| ! | AAGTAGAAATTTTCGGTCTA+TGG | + | chr6_2:65055673-65055692 | Msa0923880:CDS | 30.0% |
| GGATATGATAACCTTACATT+CGG | + | chr6_2:65055710-65055729 | Msa0923880:CDS | 30.0% | |
| GATATGATAACCTTACATTC+GGG | + | chr6_2:65055711-65055730 | Msa0923880:CDS | 30.0% | |
| ATATGATAACCTTACATTCG+GGG | + | chr6_2:65055712-65055731 | Msa0923880:CDS | 30.0% | |
| TCGAAACTACATTGACATAA+TGG | + | chr6_2:65055745-65055764 | Msa0923880:CDS | 30.0% | |
| CGAAACTACATTGACATAAT+GGG | + | chr6_2:65055746-65055765 | Msa0923880:CDS | 30.0% | |
| GAAACTACATTGACATAATG+GGG | + | chr6_2:65055747-65055766 | Msa0923880:CDS | 30.0% | |
| CTTGGCAATATATAACAAGA+GGG | - | chr6_2:65055944-65055963 | None:intergenic | 30.0% | |
| TCTTGGCAATATATAACAAG+AGG | - | chr6_2:65055945-65055964 | None:intergenic | 30.0% | |
| ! | CTTGTTATATATTGCCAAGA+TGG | + | chr6_2:65055945-65055964 | Msa0923880:CDS | 30.0% |
| !!! | GTTTTGATTTTGGACAATCA+CGG | + | chr6_2:65054823-65054842 | Msa0923880:CDS | 30.0% |
| AACATATAAGGTTATGGAGA+AGG | - | chr6_2:65054858-65054877 | None:intergenic | 30.0% | |
| !!! | ACGAAATTCAGTTTTGGAAT+CGG | - | chr6_2:65054927-65054946 | None:intergenic | 30.0% |
| TTGAACTGGATGCTAAAATA+GGG | - | chr6_2:65055040-65055059 | None:intergenic | 30.0% | |
| TTTACTATTGTCTCTTGAAC+TGG | - | chr6_2:65055054-65055073 | None:intergenic | 30.0% | |
| TCACATAAACGAAAATTGTG+AGG | + | chr6_2:65055228-65055247 | Msa0923880:CDS | 30.0% | |
| AAATGAAGATGATGAACCTA+AGG | + | chr6_2:65055264-65055283 | Msa0923880:CDS | 30.0% | |
| TTAAATTTCATGCCAACCTT+AGG | - | chr6_2:65055283-65055302 | None:intergenic | 30.0% | |
| CATGAAATTTAATTCTGCAG+AGG | + | chr6_2:65055291-65055310 | Msa0923880:CDS | 30.0% | |
| ! | TATGCAAGATGTATAGGTTT+TGG | + | chr6_2:65055337-65055356 | Msa0923880:intron | 30.0% |
| !! | TGGAACAACTACTATTTCTA+AGG | + | chr6_2:65055526-65055545 | Msa0923880:CDS | 30.0% |
| ! | CCAATCTCCTTTTTATACTA+GGG | - | chr6_2:65055625-65055644 | None:intergenic | 30.0% |
| ! | TCCAATCTCCTTTTTATACT+AGG | - | chr6_2:65055626-65055645 | None:intergenic | 30.0% |
| TAGTATAAAAAGGAGATTGG+AGG | + | chr6_2:65055625-65055644 | Msa0923880:CDS | 30.0% | |
| ! | AAGTAGAAATTTTCGGTCTA+TGG | + | chr6_2:65055673-65055692 | Msa0923880:CDS | 30.0% |
| GGATATGATAACCTTACATT+CGG | + | chr6_2:65055710-65055729 | Msa0923880:CDS | 30.0% | |
| GATATGATAACCTTACATTC+GGG | + | chr6_2:65055711-65055730 | Msa0923880:CDS | 30.0% | |
| ATATGATAACCTTACATTCG+GGG | + | chr6_2:65055712-65055731 | Msa0923880:CDS | 30.0% | |
| TCGAAACTACATTGACATAA+TGG | + | chr6_2:65055745-65055764 | Msa0923880:CDS | 30.0% | |
| CGAAACTACATTGACATAAT+GGG | + | chr6_2:65055746-65055765 | Msa0923880:CDS | 30.0% | |
| GAAACTACATTGACATAATG+GGG | + | chr6_2:65055747-65055766 | Msa0923880:CDS | 30.0% | |
| CTTGGCAATATATAACAAGA+GGG | - | chr6_2:65055944-65055963 | None:intergenic | 30.0% | |
| TCTTGGCAATATATAACAAG+AGG | - | chr6_2:65055945-65055964 | None:intergenic | 30.0% | |
| ! | CTTGTTATATATTGCCAAGA+TGG | + | chr6_2:65055945-65055964 | Msa0923880:CDS | 30.0% |
| !!! | AAATTCAGTTTTGGAATCGG+CGG | - | chr6_2:65054924-65054943 | None:intergenic | 35.0% |
| GACAATCAAACTAACAACTC+TGG | - | chr6_2:65054955-65054974 | None:intergenic | 35.0% | |
| CTTGAACTGGATGCTAAAAT+AGG | - | chr6_2:65055041-65055060 | None:intergenic | 35.0% | |
| AGTACAAAAAAGGGAGATGA+TGG | + | chr6_2:65055373-65055392 | Msa0923880:intron | 35.0% | |
| ! | TGTGTTTTCATGCTAGGATT+TGG | - | chr6_2:65055470-65055489 | None:intergenic | 35.0% |
| ! | TTACAGTGTGTTTTCATGCT+AGG | - | chr6_2:65055476-65055495 | None:intergenic | 35.0% |
| TAGCATGAAAACACACTGTA+AGG | + | chr6_2:65055475-65055494 | Msa0923880:CDS | 35.0% | |
| CCCTAGTATAAAAAGGAGAT+TGG | + | chr6_2:65055622-65055641 | Msa0923880:CDS | 35.0% | |
| TACTTACATTAATCCCAGCT+TGG | - | chr6_2:65055658-65055677 | None:intergenic | 35.0% | |
| GTTATATATTGCCAAGATGG+AGG | + | chr6_2:65055948-65055967 | Msa0923880:CDS | 35.0% | |
| TTAATATCCTTCCTCCATCT+TGG | - | chr6_2:65055962-65055981 | None:intergenic | 35.0% | |
| !!! | AGTGGTTTTGATCAATTAGC+CGG | + | chr6_2:65056004-65056023 | Msa0923880:CDS | 35.0% |
| TGAAGAAGCAACTTCGTAAA+AGG | - | chr6_2:65056068-65056087 | None:intergenic | 35.0% | |
| !!! | AAATTCAGTTTTGGAATCGG+CGG | - | chr6_2:65054924-65054943 | None:intergenic | 35.0% |
| GACAATCAAACTAACAACTC+TGG | - | chr6_2:65054955-65054974 | None:intergenic | 35.0% | |
| CTTGAACTGGATGCTAAAAT+AGG | - | chr6_2:65055041-65055060 | None:intergenic | 35.0% | |
| AGTACAAAAAAGGGAGATGA+TGG | + | chr6_2:65055373-65055392 | Msa0923880:intron | 35.0% | |
| ! | TGTGTTTTCATGCTAGGATT+TGG | - | chr6_2:65055470-65055489 | None:intergenic | 35.0% |
| ! | TTACAGTGTGTTTTCATGCT+AGG | - | chr6_2:65055476-65055495 | None:intergenic | 35.0% |
| TAGCATGAAAACACACTGTA+AGG | + | chr6_2:65055475-65055494 | Msa0923880:CDS | 35.0% | |
| CCCTAGTATAAAAAGGAGAT+TGG | + | chr6_2:65055622-65055641 | Msa0923880:CDS | 35.0% | |
| TACTTACATTAATCCCAGCT+TGG | - | chr6_2:65055658-65055677 | None:intergenic | 35.0% | |
| GTTATATATTGCCAAGATGG+AGG | + | chr6_2:65055948-65055967 | Msa0923880:CDS | 35.0% | |
| TTAATATCCTTCCTCCATCT+TGG | - | chr6_2:65055962-65055981 | None:intergenic | 35.0% | |
| !!! | AGTGGTTTTGATCAATTAGC+CGG | + | chr6_2:65056004-65056023 | Msa0923880:CDS | 35.0% |
| TGAAGAAGCAACTTCGTAAA+AGG | - | chr6_2:65056068-65056087 | None:intergenic | 35.0% | |
| ! | GAAGCGACGAAATTCAGTTT+TGG | - | chr6_2:65054933-65054952 | None:intergenic | 40.0% |
| GTAGCAATGCTGATAAACAG+AGG | - | chr6_2:65054985-65055004 | None:intergenic | 40.0% | |
| GAAGATGATGAACCTAAGGT+TGG | + | chr6_2:65055268-65055287 | Msa0923880:CDS | 40.0% | |
| TACTCACATAGCTTCTTGCA+CGG | - | chr6_2:65055427-65055446 | None:intergenic | 40.0% | |
| AATGTATGCGTGTCTTCAGA+TGG | + | chr6_2:65055506-65055525 | Msa0923880:CDS | 40.0% | |
| TCTATGGTTGTTGAAGCAAG+TGG | + | chr6_2:65055689-65055708 | Msa0923880:CDS | 40.0% | |
| ! | CATCTTTTTCCCCGAATGTA+AGG | - | chr6_2:65055724-65055743 | None:intergenic | 40.0% |
| CTGTGAGCTTAAGAACACAA+AGG | - | chr6_2:65055904-65055923 | None:intergenic | 40.0% | |
| TATATTGCCAAGATGGAGGA+AGG | + | chr6_2:65055952-65055971 | Msa0923880:CDS | 40.0% | |
| ! | GAAGCGACGAAATTCAGTTT+TGG | - | chr6_2:65054933-65054952 | None:intergenic | 40.0% |
| GTAGCAATGCTGATAAACAG+AGG | - | chr6_2:65054985-65055004 | None:intergenic | 40.0% | |
| GAAGATGATGAACCTAAGGT+TGG | + | chr6_2:65055268-65055287 | Msa0923880:CDS | 40.0% | |
| TACTCACATAGCTTCTTGCA+CGG | - | chr6_2:65055427-65055446 | None:intergenic | 40.0% | |
| AATGTATGCGTGTCTTCAGA+TGG | + | chr6_2:65055506-65055525 | Msa0923880:CDS | 40.0% | |
| TCTATGGTTGTTGAAGCAAG+TGG | + | chr6_2:65055689-65055708 | Msa0923880:CDS | 40.0% | |
| ! | CATCTTTTTCCCCGAATGTA+AGG | - | chr6_2:65055724-65055743 | None:intergenic | 40.0% |
| CTGTGAGCTTAAGAACACAA+AGG | - | chr6_2:65055904-65055923 | None:intergenic | 40.0% | |
| TATATTGCCAAGATGGAGGA+AGG | + | chr6_2:65055952-65055971 | Msa0923880:CDS | 40.0% | |
| !!! | CACGGCACACGTTTTGATTT+TGG | + | chr6_2:65054813-65054832 | Msa0923880:CDS | 45.0% |
| TTGGAGGTTAATGACCAAGC+TGG | + | chr6_2:65055641-65055660 | Msa0923880:CDS | 45.0% | |
| TGGAGGTTAATGACCAAGCT+GGG | + | chr6_2:65055642-65055661 | Msa0923880:CDS | 45.0% | |
| ACGCTGCAACTCTTCATTTC+CGG | - | chr6_2:65056026-65056045 | None:intergenic | 45.0% | |
| !!! | CACGGCACACGTTTTGATTT+TGG | + | chr6_2:65054813-65054832 | Msa0923880:CDS | 45.0% |
| TTGGAGGTTAATGACCAAGC+TGG | + | chr6_2:65055641-65055660 | Msa0923880:CDS | 45.0% | |
| TGGAGGTTAATGACCAAGCT+GGG | + | chr6_2:65055642-65055661 | Msa0923880:CDS | 45.0% | |
| ACGCTGCAACTCTTCATTTC+CGG | - | chr6_2:65056026-65056045 | None:intergenic | 45.0% | |
| TTGGAATCGGCGGTGAATGT+TGG | - | chr6_2:65054914-65054933 | None:intergenic | 50.0% | |
| TTGGAATCGGCGGTGAATGT+TGG | - | chr6_2:65054914-65054933 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 65054799 | 65056165 | 65054799 | ID=Msa0923880;Name=Msa0923880 |
| chr6_2 | mRNA | 65054799 | 65056165 | 65054799 | ID=Msa0923880-mRNA-1;Parent=Msa0923880;Name=Msa0923880-mRNA-1;_AED=0.32;_eAED=0.34;_QI=0|0|0|0.66|0|0.33|3|0|336 |
| chr6_2 | exon | 65054799 | 65054844 | 65054799 | ID=Msa0923880-mRNA-1:exon:10202;Parent=Msa0923880-mRNA-1 |
| chr6_2 | exon | 65055179 | 65055352 | 65055179 | ID=Msa0923880-mRNA-1:exon:10203;Parent=Msa0923880-mRNA-1 |
| chr6_2 | exon | 65055375 | 65056165 | 65055375 | ID=Msa0923880-mRNA-1:exon:10204;Parent=Msa0923880-mRNA-1 |
| chr6_2 | CDS | 65054799 | 65054844 | 65054799 | ID=Msa0923880-mRNA-1:cds;Parent=Msa0923880-mRNA-1 |
| chr6_2 | CDS | 65055179 | 65055352 | 65055179 | ID=Msa0923880-mRNA-1:cds;Parent=Msa0923880-mRNA-1 |
| chr6_2 | CDS | 65055375 | 65056165 | 65055375 | ID=Msa0923880-mRNA-1:cds;Parent=Msa0923880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
