Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0924230 | TKS08620.1 | 61.818 | 110 | 24 | 3 | 95 | 200 | 5 | 100 | 6.81e-33 | 127 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0924230 | sp|Q9FY93|NAC83_ARATH | 76.364 | 55 | 13 | 0 | 96 | 150 | 6 | 60 | 2.40e-21 | 92.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0924230 | TF | NAC |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0924230 | MtrunA17_Chr7g0214071 | 89.091 | 55 | 6 | 0 | 96 | 150 | 7 | 61 | 2.24e-28 | 107 |
| Msa0924230 | MtrunA17_Chr8g0385991 | 67.857 | 56 | 18 | 0 | 95 | 150 | 5 | 60 | 1.28e-19 | 84.0 |
| Msa0924230 | MtrunA17_Chr3g0131911 | 59.322 | 59 | 24 | 0 | 92 | 150 | 2 | 60 | 1.52e-17 | 78.6 |
| Msa0924230 | MtrunA17_Chr2g0318101 | 67.347 | 49 | 16 | 0 | 103 | 151 | 14 | 62 | 4.58e-15 | 73.2 |
| Msa0924230 | MtrunA17_Chr4g0047841 | 68.750 | 48 | 15 | 0 | 103 | 150 | 14 | 61 | 8.98e-15 | 72.4 |
| Msa0924230 | MtrunA17_Chr7g0252971 | 56.863 | 51 | 22 | 0 | 101 | 151 | 5 | 55 | 1.03e-14 | 72.0 |
| Msa0924230 | MtrunA17_Chr7g0263931 | 55.769 | 52 | 23 | 0 | 99 | 150 | 6 | 57 | 5.81e-14 | 69.7 |
| Msa0924230 | MtrunA17_Chr3g0124761 | 60.784 | 51 | 20 | 0 | 100 | 150 | 3 | 53 | 5.12e-13 | 67.0 |
| Msa0924230 | MtrunA17_Chr4g0042561 | 54.545 | 55 | 25 | 0 | 96 | 150 | 1 | 55 | 5.93e-13 | 66.6 |
| Msa0924230 | MtrunA17_Chr5g0417791 | 61.224 | 49 | 19 | 0 | 102 | 150 | 1 | 49 | 6.96e-13 | 66.2 |
| Msa0924230 | MtrunA17_Chr2g0326361 | 59.574 | 47 | 19 | 0 | 104 | 150 | 14 | 60 | 9.34e-13 | 66.2 |
| Msa0924230 | MtrunA17_Chr3g0109821 | 63.265 | 49 | 18 | 0 | 102 | 150 | 4 | 52 | 4.79e-12 | 65.1 |
| Msa0924230 | MtrunA17_Chr5g0433781 | 59.184 | 49 | 20 | 0 | 102 | 150 | 4 | 52 | 2.16e-11 | 63.2 |
| Msa0924230 | MtrunA17_Chr3g0115451 | 90.625 | 32 | 2 | 1 | 68 | 98 | 8 | 39 | 3.19e-11 | 58.9 |
| Msa0924230 | MtrunA17_Chr8g0384721 | 56.863 | 51 | 22 | 0 | 100 | 150 | 3 | 53 | 3.23e-11 | 61.6 |
| Msa0924230 | MtrunA17_Chr4g0060931 | 53.704 | 54 | 25 | 0 | 101 | 154 | 14 | 67 | 4.92e-11 | 61.6 |
| Msa0924230 | MtrunA17_Chr4g0054791 | 59.574 | 47 | 19 | 0 | 104 | 150 | 6 | 52 | 5.16e-11 | 61.2 |
| Msa0924230 | MtrunA17_Chr3g0091921 | 56.000 | 50 | 22 | 0 | 101 | 150 | 13 | 62 | 5.44e-11 | 61.2 |
| Msa0924230 | MtrunA17_Chr2g0309891 | 57.143 | 49 | 21 | 0 | 102 | 150 | 4 | 52 | 5.62e-11 | 61.2 |
| Msa0924230 | MtrunA17_Chr5g0400461 | 54.902 | 51 | 23 | 0 | 100 | 150 | 2 | 52 | 6.93e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0924230 | AT5G13180.1 | 76.364 | 55 | 13 | 0 | 96 | 150 | 6 | 60 | 2.44e-22 | 92.0 |
| Msa0924230 | AT2G33480.1 | 67.857 | 56 | 18 | 0 | 95 | 150 | 6 | 61 | 2.23e-20 | 87.0 |
| Msa0924230 | AT2G33480.2 | 67.857 | 56 | 18 | 0 | 95 | 150 | 6 | 61 | 2.39e-20 | 87.0 |
| Msa0924230 | AT3G04070.1 | 57.143 | 56 | 24 | 0 | 96 | 151 | 2 | 57 | 5.56e-15 | 73.6 |
| Msa0924230 | AT3G04070.2 | 57.143 | 56 | 24 | 0 | 96 | 151 | 2 | 57 | 5.89e-15 | 73.2 |
| Msa0924230 | AT1G61110.1 | 64.706 | 51 | 18 | 0 | 100 | 150 | 12 | 62 | 2.28e-14 | 71.2 |
| Msa0924230 | AT4G27410.3 | 44.595 | 74 | 40 | 1 | 100 | 172 | 10 | 83 | 5.93e-13 | 67.4 |
| Msa0924230 | AT1G77450.1 | 54.545 | 55 | 25 | 0 | 96 | 150 | 2 | 56 | 6.06e-13 | 66.6 |
| Msa0924230 | AT1G69490.1 | 61.702 | 47 | 18 | 0 | 104 | 150 | 9 | 55 | 8.96e-13 | 66.2 |
| Msa0924230 | AT1G65910.1 | 59.184 | 49 | 20 | 0 | 102 | 150 | 4 | 52 | 1.21e-12 | 67.0 |
| Msa0924230 | AT3G04060.1 | 56.604 | 53 | 23 | 0 | 102 | 154 | 18 | 70 | 1.70e-12 | 66.2 |
| Msa0924230 | AT5G17260.1 | 61.224 | 49 | 19 | 0 | 102 | 150 | 4 | 52 | 4.16e-12 | 65.5 |
| Msa0924230 | AT5G39820.1 | 65.957 | 47 | 16 | 0 | 106 | 152 | 22 | 68 | 7.11e-12 | 64.3 |
| Msa0924230 | AT3G15510.1 | 68.182 | 44 | 14 | 0 | 108 | 151 | 21 | 64 | 9.90e-12 | 63.9 |
| Msa0924230 | AT4G27410.2 | 54.902 | 51 | 23 | 0 | 100 | 150 | 10 | 60 | 1.18e-11 | 63.5 |
| Msa0924230 | AT3G03200.1 | 57.143 | 49 | 21 | 0 | 102 | 150 | 4 | 52 | 1.28e-11 | 63.9 |
| Msa0924230 | AT1G54330.1 | 61.224 | 49 | 19 | 0 | 102 | 150 | 4 | 52 | 1.54e-11 | 63.2 |
| Msa0924230 | AT5G04395.1 | 50.000 | 62 | 29 | 1 | 93 | 152 | 15 | 76 | 2.08e-11 | 61.2 |
| Msa0924230 | AT5G39610.1 | 58.000 | 50 | 21 | 0 | 101 | 150 | 17 | 66 | 2.18e-11 | 62.4 |
| Msa0924230 | AT3G17730.1 | 62.500 | 48 | 18 | 0 | 102 | 149 | 4 | 51 | 3.44e-11 | 61.6 |
| Msa0924230 | AT1G52880.1 | 65.909 | 44 | 15 | 0 | 108 | 151 | 21 | 64 | 3.72e-11 | 62.0 |
| Msa0924230 | AT5G61430.1 | 51.852 | 54 | 26 | 0 | 101 | 154 | 13 | 66 | 3.79e-11 | 62.0 |
Find 63 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGACCACGCCCACAATATTT+TGG | 0.191814 | 6_2:-66021019 | None:intergenic |
| CTTCTTCCCATTTGGATACT+TGG | 0.273529 | 6_2:-66022259 | None:intergenic |
| CTTCACAACTTCTTCCCATT+TGG | 0.312516 | 6_2:-66022267 | None:intergenic |
| TGTCCATGTTCAACTCCTTT+TGG | 0.314384 | 6_2:-66021046 | None:intergenic |
| GAACTCTGGCCGGGTTGTTT+TGG | 0.343264 | 6_2:-66020565 | None:intergenic |
| ACCTGTTGAGGTAGTCTTCT+AGG | 0.362665 | 6_2:-66020846 | None:intergenic |
| ATCTTTGCAAGTCTGATCCT+TGG | 0.370348 | 6_2:+66021967 | Msa0924230:CDS |
| GAGGCTCCCAAACGTCCTTC+AGG | 0.391219 | 6_2:+66020819 | Msa0924230:CDS |
| AGGACGACCTGAAGGACGTT+TGG | 0.393077 | 6_2:-66020826 | None:intergenic |
| TCTTTGCAAGTCTGATCCTT+GGG | 0.393386 | 6_2:+66021968 | Msa0924230:CDS |
| ATCACCTTCTGCAGCACATA+AGG | 0.415600 | 6_2:-66019519 | None:intergenic |
| AAATGTGTCCAACCTCAAAA+AGG | 0.432562 | 6_2:+66020588 | Msa0924230:CDS |
| GACTTGCAAAGATCAACTTT+AGG | 0.439095 | 6_2:-66021957 | None:intergenic |
| CCAAGCAGTGGCAACAACTT+TGG | 0.439405 | 6_2:+66022410 | Msa0924230:CDS |
| AAAGAAGCCAAGTATCCAAA+TGG | 0.440359 | 6_2:+66022252 | Msa0924230:CDS |
| TGAAGTTGTTGGAAGGCAAC+TGG | 0.447982 | 6_2:+66022285 | Msa0924230:CDS |
| TCCTAGAAGACTACCTCAAC+AGG | 0.449974 | 6_2:+66020845 | Msa0924230:CDS |
| GAATGATGAAAGCAGGTAAA+GGG | 0.453917 | 6_2:-66021935 | None:intergenic |
| CAGTGGCAACAACTTTGGTT+AGG | 0.460907 | 6_2:+66022415 | Msa0924230:CDS |
| CTTCATCTGTTGGATGAAAA+CGG | 0.464077 | 6_2:-66021872 | None:intergenic |
| CTCAGCTTCAAGTTCAAAAG+TGG | 0.464412 | 6_2:+66022451 | Msa0924230:CDS |
| CCAAAGTTGTTGCCACTGCT+TGG | 0.470963 | 6_2:-66022410 | None:intergenic |
| GGACGACCTGAAGGACGTTT+GGG | 0.471772 | 6_2:-66020825 | None:intergenic |
| GACACATTTGAACTCTGGCC+GGG | 0.477107 | 6_2:-66020574 | None:intergenic |
| GTACGTCGTGGGCGTGGGCG+TGG | 0.483993 | 6_2:+66020535 | Msa0924230:CDS |
| GGAATGATGAAAGCAGGTAA+AGG | 0.493045 | 6_2:-66021936 | None:intergenic |
| GGAAGAAGTTGTGAAGTTGT+TGG | 0.511694 | 6_2:+66022274 | Msa0924230:CDS |
| GGACACATTTGAACTCTGGC+CGG | 0.519477 | 6_2:-66020575 | None:intergenic |
| AAGAAGCCAAGTATCCAAAT+GGG | 0.526074 | 6_2:+66022253 | Msa0924230:CDS |
| TGTTCAATATTTGAAGCGTA+AGG | 0.535819 | 6_2:+66021902 | Msa0924230:CDS |
| GGTTGGACACATTTGAACTC+TGG | 0.536218 | 6_2:-66020579 | None:intergenic |
| GAGGAGGCACCAAAATATTG+TGG | 0.540522 | 6_2:+66021010 | Msa0924230:CDS |
| ACAACATGTACTTCATCTGT+TGG | 0.542137 | 6_2:-66021882 | None:intergenic |
| GCACCAAAATATTGTGGGCG+TGG | 0.544621 | 6_2:+66021016 | Msa0924230:CDS |
| AGGAGGCACCAAAATATTGT+GGG | 0.546026 | 6_2:+66021011 | Msa0924230:CDS |
| GGGCGTGGTCGTCCACCAAA+AGG | 0.548568 | 6_2:+66021031 | Msa0924230:CDS |
| GCTACCTTTGCGAGAGTAGG+TGG | 0.566422 | 6_2:-66021073 | None:intergenic |
| TCTGATCCTTGGGATTTACC+TGG | 0.570788 | 6_2:+66021978 | Msa0924230:CDS |
| TTATCATGGTGCTAGAGCTA+TGG | 0.574656 | 6_2:+66019483 | None:intergenic |
| TGTGTCGCATATTTCTGAAG+AGG | 0.578122 | 6_2:+66022344 | Msa0924230:CDS |
| ACTTTAGGAATGATGAAAGC+AGG | 0.579508 | 6_2:-66021942 | None:intergenic |
| AAAATGGAGAAGACAGTGAA+AGG | 0.579735 | 6_2:+66022380 | Msa0924230:CDS |
| AAGGCAACTGGAAGGCAACA+TGG | 0.580590 | 6_2:+66022297 | Msa0924230:CDS |
| CGGAGCCGCCTGTACGTCGT+GGG | 0.581875 | 6_2:+66020524 | Msa0924230:CDS |
| ACCTCCTTATGTGCTGCAGA+AGG | 0.585928 | 6_2:+66019515 | Msa0924230:CDS |
| CCACCAAAAGGAGTTGAACA+TGG | 0.592515 | 6_2:+66021043 | Msa0924230:CDS |
| GAAGTTGTGAAGTTGTTGGA+AGG | 0.603981 | 6_2:+66022278 | Msa0924230:CDS |
| AATACACACACTACCTGTTG+AGG | 0.606699 | 6_2:-66020858 | None:intergenic |
| ACCTTCTGCAGCACATAAGG+AGG | 0.613637 | 6_2:-66019516 | None:intergenic |
| AAAGGAGTGAAGCCAAGCAG+TGG | 0.615889 | 6_2:+66022398 | Msa0924230:CDS |
| TGCATACCAGGTAAATCCCA+AGG | 0.616035 | 6_2:-66021984 | None:intergenic |
| GTTGGATGAAAACGGAAACC+TGG | 0.621096 | 6_2:-66021864 | None:intergenic |
| ATATTTCTGAAGAGGAGAGA+TGG | 0.626828 | 6_2:+66022352 | Msa0924230:CDS |
| GATGCTACCTTTGCGAGAGT+AGG | 0.627140 | 6_2:-66021076 | None:intergenic |
| GGTGAAGTGAGATTGCCACC+AGG | 0.631641 | 6_2:+66021846 | Msa0924230:CDS |
| GTTGTTGGAAGGCAACTGGA+AGG | 0.646990 | 6_2:+66022289 | Msa0924230:CDS |
| AGTCTTCTAGGACGACCTGA+AGG | 0.650297 | 6_2:-66020834 | None:intergenic |
| CCACGCCCACGACGTACAGG+CGG | 0.659914 | 6_2:-66020529 | None:intergenic |
| TGAACCACCTACTCTCGCAA+AGG | 0.664729 | 6_2:+66021069 | Msa0924230:CDS |
| GGTCGTCCACCAAAACAACC+CGG | 0.700876 | 6_2:+66020556 | Msa0924230:CDS |
| GCACTAGGGAGATAAAGATG+AGG | 0.716293 | 6_2:+66020800 | Msa0924230:intron |
| GTTTCACTAAGGAGATAGAG+CGG | 0.732783 | 6_2:+66020504 | Msa0924230:intron |
| GGATGAAAACGGAAACCTGG+TGG | 0.761895 | 6_2:-66021861 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTATTATTATTATT+TGG | - | chr6_2:66019940-66019959 | None:intergenic | 0.0% |
| !! | AAATAAATTTAGTCTAAATT+TGG | + | chr6_2:66020360-66020379 | Msa0924230:intron | 10.0% |
| !! | AACTAATTAAATAACTAAAA+TGG | + | chr6_2:66020764-66020783 | Msa0924230:intron | 10.0% |
| !!! | ACTTTTATTTTGTATAAAAT+TGG | + | chr6_2:66020895-66020914 | Msa0924230:intron | 10.0% |
| !!! | TATTTTATATTCTATAGAAT+TGG | + | chr6_2:66021122-66021141 | Msa0924230:intron | 10.0% |
| !!! | ATTTTATATTCTATAGAATT+GGG | + | chr6_2:66021123-66021142 | Msa0924230:intron | 10.0% |
| !! | TATAAATTAAGAAAAAGAAA+AGG | - | chr6_2:66022010-66022029 | None:intergenic | 10.0% |
| !!! | TAATTTTCTCAAAATTTAAT+CGG | - | chr6_2:66022079-66022098 | None:intergenic | 10.0% |
| !! | CAAAAACATTAGATAAATTA+TGG | - | chr6_2:66019572-66019591 | None:intergenic | 15.0% |
| !!! | AAATTTGACTTTCAAAATAT+TGG | + | chr6_2:66020390-66020409 | Msa0924230:intron | 15.0% |
| !! | AGTAATTAAAAAACTAAAGA+TGG | + | chr6_2:66020471-66020490 | Msa0924230:intron | 15.0% |
| !! | TCTTAATTTATAATGAAACA+CGG | + | chr6_2:66022018-66022037 | Msa0924230:intron | 15.0% |
| !! | ATAAATTATGGTAGCAATAA+AGG | - | chr6_2:66019560-66019579 | None:intergenic | 20.0% |
| !! | TGATTAAATATGTAGTTTCA+CGG | + | chr6_2:66019761-66019780 | Msa0924230:intron | 20.0% |
| !! | TTCTAAATATGATGCATTTA+CGG | - | chr6_2:66020038-66020057 | None:intergenic | 20.0% |
| !!! | AAATGGTTTTATTTTAACTC+AGG | - | chr6_2:66020160-66020179 | None:intergenic | 20.0% |
| !!! | TTTTACTGTATGATTAGAAA+TGG | + | chr6_2:66020242-66020261 | Msa0924230:intron | 20.0% |
| !!! | TGTCTGATTTTATACAAAAT+GGG | - | chr6_2:66020628-66020647 | None:intergenic | 20.0% |
| !!! | ATGTCTGATTTTATACAAAA+TGG | - | chr6_2:66020629-66020648 | None:intergenic | 20.0% |
| !! | AACTCTATCTAAAAATTTCA+AGG | + | chr6_2:66021204-66021223 | Msa0924230:intron | 20.0% |
| !!! | TTTTACTGTATGATTAGAAA+TGG | + | chr6_2:66020242-66020261 | Msa0924230:intron | 20.0% |
| !! | AAACTCATAAGTTATTTGTT+GGG | - | chr6_2:66021763-66021782 | None:intergenic | 20.0% |
| !! | ATCAATGTAAATAAATGTGT+TGG | + | chr6_2:66022104-66022123 | Msa0924230:intron | 20.0% |
| ! | GAAACTACATATTTAATCAC+AGG | - | chr6_2:66019760-66019779 | None:intergenic | 25.0% |
| ! | GATTAAATATGTAGTTTCAC+GGG | + | chr6_2:66019762-66019781 | Msa0924230:intron | 25.0% |
| ! | ATTAAATATGTAGTTTCACG+GGG | + | chr6_2:66019763-66019782 | Msa0924230:intron | 25.0% |
| !! | ATATACATACTACCTTTTTG+AGG | - | chr6_2:66020603-66020622 | None:intergenic | 25.0% |
| ! | TGTATTTATCTAGTAGTCTT+AGG | - | chr6_2:66021257-66021276 | None:intergenic | 25.0% |
| ! | TGTTCATTTCTTGAAAACTA+AGG | - | chr6_2:66021486-66021505 | None:intergenic | 25.0% |
| ! | ATACGATTCTATGATATTGA+AGG | + | chr6_2:66021578-66021597 | Msa0924230:intron | 25.0% |
| ! | ATGATATTGAAGGAATTCAT+TGG | + | chr6_2:66021588-66021607 | Msa0924230:intron | 25.0% |
| ! | TGTGAATTATCAATTCTTTG+CGG | + | chr6_2:66021695-66021714 | Msa0924230:intron | 25.0% |
| !!! | GTTGTATTTTGATTTTGAGA+AGG | - | chr6_2:66021737-66021756 | None:intergenic | 25.0% |
| ! | CAAACTCATAAGTTATTTGT+TGG | - | chr6_2:66021764-66021783 | None:intergenic | 25.0% |
| AAAAACCACTTGTGATATTG+TGG | - | chr6_2:66019818-66019837 | None:intergenic | 30.0% | |
| AAGAATTGTGACATTGTGAT+TGG | + | chr6_2:66019853-66019872 | Msa0924230:intron | 30.0% | |
| ! | GACATAAAATTTGGTGACAT+TGG | - | chr6_2:66019888-66019907 | None:intergenic | 30.0% |
| ! | ATTTGGTAGCATGAAAAACT+GGG | - | chr6_2:66019923-66019942 | None:intergenic | 30.0% |
| ! | TATTTGGTAGCATGAAAAAC+TGG | - | chr6_2:66019924-66019943 | None:intergenic | 30.0% |
| !!! | GTTGACATTTTTGTTGTTTC+TGG | - | chr6_2:66019996-66020015 | None:intergenic | 30.0% |
| ACATGCTTACTTTGTGAAAA+TGG | - | chr6_2:66020177-66020196 | None:intergenic | 30.0% | |
| TGTTCATTTCTCGAAAACTA+AGG | - | chr6_2:66020200-66020219 | None:intergenic | 30.0% | |
| ACTGTATGATTAGAAATGGA+TGG | + | chr6_2:66020246-66020265 | Msa0924230:intron | 30.0% | |
| ! | ATATGATTCTATGATAGTGC+AGG | + | chr6_2:66020292-66020311 | Msa0924230:intron | 30.0% |
| !! | TTTATCTTTGAGACTCTAGA+CGG | + | chr6_2:66020714-66020733 | Msa0924230:intron | 30.0% |
| GTAATACCTCACTTCAAAAA+TGG | - | chr6_2:66020742-66020761 | None:intergenic | 30.0% | |
| ! | GTGTGTGTATTTTCTTTTCA+AGG | + | chr6_2:66020870-66020889 | Msa0924230:intron | 30.0% |
| GCAACACAAATTTAGCTATA+TGG | - | chr6_2:66020976-66020995 | None:intergenic | 30.0% | |
| AGACTCAAAATTTCATCATC+CGG | + | chr6_2:66021280-66021299 | Msa0924230:intron | 30.0% | |
| ATCTAAAGATGATGCATTTC+TGG | - | chr6_2:66021345-66021364 | None:intergenic | 30.0% | |
| ACTGTATGATTAGAAATGGA+TGG | + | chr6_2:66020246-66020265 | Msa0924230:intron | 30.0% | |
| ! | CAACTTATTTGTGCCTTTTT+AGG | + | chr6_2:66021666-66021685 | Msa0924230:intron | 30.0% |
| ATTCACATGCTTTCCTAAAA+AGG | - | chr6_2:66021682-66021701 | None:intergenic | 30.0% | |
| TCACCATTCTTCACAAAATA+GGG | - | chr6_2:66021831-66021850 | None:intergenic | 30.0% | |
| TTCACCATTCTTCACAAAAT+AGG | - | chr6_2:66021832-66021851 | None:intergenic | 30.0% | |
| ! | TGTTCAATATTTGAAGCGTA+AGG | + | chr6_2:66021902-66021921 | Msa0924230:CDS | 30.0% |
| ! | TTTGAGTGTGTTGTTCTATT+AGG | + | chr6_2:66022195-66022214 | Msa0924230:intron | 30.0% |
| TGTTGTTCTATTAGGTGATA+TGG | + | chr6_2:66022203-66022222 | Msa0924230:intron | 30.0% | |
| !! | TGGTTTTGCAGAATGAAAAT+TGG | + | chr6_2:66022317-66022336 | Msa0924230:CDS | 30.0% |
| ! | GGTTTTGCAGAATGAAAATT+GGG | + | chr6_2:66022318-66022337 | Msa0924230:CDS | 30.0% |
| TATTGCATCATCACTGCAAA+TGG | - | chr6_2:66019685-66019704 | None:intergenic | 35.0% | |
| CACTTGGGTGACATAAAATT+TGG | - | chr6_2:66019897-66019916 | None:intergenic | 35.0% | |
| !! | TTGTTGTTTCTGGAAATGCT+AGG | - | chr6_2:66019986-66020005 | None:intergenic | 35.0% |
| GATTTAATGTGATCGATGCA+TGG | - | chr6_2:66020070-66020089 | None:intergenic | 35.0% | |
| AAGAAGATGAGAGACTTCTA+TGG | - | chr6_2:66020113-66020132 | None:intergenic | 35.0% | |
| ATGATTAGAAATGGATGGCT+AGG | + | chr6_2:66020251-66020270 | Msa0924230:intron | 35.0% | |
| TGATTAGAAATGGATGGCTA+GGG | + | chr6_2:66020252-66020271 | Msa0924230:intron | 35.0% | |
| ! | CAACTTATCTATGCCTTTTC+AGG | + | chr6_2:66020329-66020348 | Msa0924230:intron | 35.0% |
| TATTTAGTCACAGCCTGAAA+AGG | - | chr6_2:66020345-66020364 | None:intergenic | 35.0% | |
| GCTAAATGTGTGTTTCACTA+AGG | + | chr6_2:66020493-66020512 | Msa0924230:intron | 35.0% | |
| AAATGTGTCCAACCTCAAAA+AGG | + | chr6_2:66020588-66020607 | Msa0924230:CDS | 35.0% | |
| !!! | ACATACTACCTTTTTGAGGT+TGG | - | chr6_2:66020599-66020618 | None:intergenic | 35.0% |
| ! | GCTAAATGTTTGTTGCACTA+GGG | + | chr6_2:66020786-66020805 | Msa0924230:intron | 35.0% |
| AGCTAAATTTGTGTTGCACT+AGG | + | chr6_2:66020979-66020998 | Msa0924230:intron | 35.0% | |
| GCTAAATTTGTGTTGCACTA+GGG | + | chr6_2:66020980-66020999 | Msa0924230:intron | 35.0% | |
| GATTTATTGTGATCGATGCA+AGG | - | chr6_2:66021377-66021396 | None:intergenic | 35.0% | |
| ATGATTAGAAATGGATGGCT+AGG | + | chr6_2:66020251-66020270 | Msa0924230:intron | 35.0% | |
| TGATTAGAAATGGATGGCTA+GGG | + | chr6_2:66020252-66020271 | Msa0924230:intron | 35.0% | |
| TTGAAGGAATTCATTGGAGA+AGG | + | chr6_2:66021594-66021613 | Msa0924230:intron | 35.0% | |
| AAACTTATCGTCCTTAGCAT+TGG | - | chr6_2:66021625-66021644 | None:intergenic | 35.0% | |
| ! | AGTCCCTATTTTGTGAAGAA+TGG | + | chr6_2:66021825-66021844 | Msa0924230:intron | 35.0% |
| CTTCATCTGTTGGATGAAAA+CGG | - | chr6_2:66021875-66021894 | None:intergenic | 35.0% | |
| ACAACATGTACTTCATCTGT+TGG | - | chr6_2:66021885-66021904 | None:intergenic | 35.0% | |
| GAATGATGAAAGCAGGTAAA+GGG | - | chr6_2:66021938-66021957 | None:intergenic | 35.0% | |
| ! | ACTTTAGGAATGATGAAAGC+AGG | - | chr6_2:66021945-66021964 | None:intergenic | 35.0% |
| GACTTGCAAAGATCAACTTT+AGG | - | chr6_2:66021960-66021979 | None:intergenic | 35.0% | |
| ! | AAAAAGAAAAGGTGCATACC+AGG | - | chr6_2:66021999-66022018 | None:intergenic | 35.0% |
| AAAGAAGCCAAGTATCCAAA+TGG | + | chr6_2:66022252-66022271 | Msa0924230:CDS | 35.0% | |
| AAGAAGCCAAGTATCCAAAT+GGG | + | chr6_2:66022253-66022272 | Msa0924230:CDS | 35.0% | |
| ! | ATATTTCTGAAGAGGAGAGA+TGG | + | chr6_2:66022352-66022371 | Msa0924230:CDS | 35.0% |
| AAAATGGAGAAGACAGTGAA+AGG | + | chr6_2:66022380-66022399 | Msa0924230:CDS | 35.0% | |
| AGAGATGAAACTGCATGCAA+AGG | + | chr6_2:66019653-66019672 | Msa0924230:intron | 40.0% | |
| ACCACTTGTGATATTGTGGT+TGG | - | chr6_2:66019814-66019833 | None:intergenic | 40.0% | |
| ! | TTTGGTGACATTGGTGACAT+TGG | - | chr6_2:66019879-66019898 | None:intergenic | 40.0% |
| TGAAAAACTGGGTAGCACTT+GGG | - | chr6_2:66019912-66019931 | None:intergenic | 40.0% | |
| ATGAAAAACTGGGTAGCACT+TGG | - | chr6_2:66019913-66019932 | None:intergenic | 40.0% | |
| GTTTCACTAAGGAGATAGAG+CGG | + | chr6_2:66020504-66020523 | Msa0924230:intron | 40.0% | |
| !!! | ACGGTACCATTTTTGAAGTG+AGG | + | chr6_2:66020733-66020752 | Msa0924230:intron | 40.0% |
| ! | GGCTAAATGTTTGTTGCACT+AGG | + | chr6_2:66020785-66020804 | Msa0924230:intron | 40.0% |
| AATACACACACTACCTGTTG+AGG | - | chr6_2:66020861-66020880 | None:intergenic | 40.0% | |
| !! | AGGAGGCACCAAAATATTGT+GGG | + | chr6_2:66021011-66021030 | Msa0924230:CDS | 40.0% |
| ! | TGTCCATGTTCAACTCCTTT+TGG | - | chr6_2:66021049-66021068 | None:intergenic | 40.0% |
| ! | ATCCATGTAACTAAGAGCAC+CGG | - | chr6_2:66021302-66021321 | None:intergenic | 40.0% |
| ! | ATTCTTTGCGGTGCTAGAAT+TGG | + | chr6_2:66021707-66021726 | Msa0924230:intron | 40.0% |
| GGAATGATGAAAGCAGGTAA+AGG | - | chr6_2:66021939-66021958 | None:intergenic | 40.0% | |
| ATCTTTGCAAGTCTGATCCT+TGG | + | chr6_2:66021967-66021986 | Msa0924230:CDS | 40.0% | |
| TCTTTGCAAGTCTGATCCTT+GGG | + | chr6_2:66021968-66021987 | Msa0924230:CDS | 40.0% | |
| GTCAGTGTCTATGTTGTGTT+TGG | - | chr6_2:66022047-66022066 | None:intergenic | 40.0% | |
| CAGCAGTAGTTATCATGTCT+CGG | - | chr6_2:66022149-66022168 | None:intergenic | 40.0% | |
| CTTCTTCCCATTTGGATACT+TGG | - | chr6_2:66022262-66022281 | None:intergenic | 40.0% | |
| CTTCACAACTTCTTCCCATT+TGG | - | chr6_2:66022270-66022289 | None:intergenic | 40.0% | |
| GGAAGAAGTTGTGAAGTTGT+TGG | + | chr6_2:66022274-66022293 | Msa0924230:CDS | 40.0% | |
| GAAGTTGTGAAGTTGTTGGA+AGG | + | chr6_2:66022278-66022297 | Msa0924230:CDS | 40.0% | |
| ! | TGTGTCGCATATTTCTGAAG+AGG | + | chr6_2:66022344-66022363 | Msa0924230:CDS | 40.0% |
| ! | AGGAGAGATGGTGCTAAAAA+TGG | + | chr6_2:66022364-66022383 | Msa0924230:CDS | 40.0% |
| ! | CTCAGCTTCAAGTTCAAAAG+TGG | + | chr6_2:66022451-66022470 | Msa0924230:CDS | 40.0% |
| ATCACCTTCTGCAGCACATA+AGG | - | chr6_2:66019522-66019541 | None:intergenic | 45.0% | |
| TAGCGATGCTGCTACTAGAT+TGG | + | chr6_2:66019719-66019738 | Msa0924230:intron | 45.0% | |
| GCCAACCACAATATCACAAG+TGG | + | chr6_2:66019810-66019829 | Msa0924230:intron | 45.0% | |
| GGTTGGACACATTTGAACTC+TGG | - | chr6_2:66020582-66020601 | None:intergenic | 45.0% | |
| GCACTAGGGAGATAAAGATG+AGG | + | chr6_2:66020800-66020819 | Msa0924230:intron | 45.0% | |
| TCCTAGAAGACTACCTCAAC+AGG | + | chr6_2:66020845-66020864 | Msa0924230:CDS | 45.0% | |
| ACCTGTTGAGGTAGTCTTCT+AGG | - | chr6_2:66020849-66020868 | None:intergenic | 45.0% | |
| GTTGCACTAGGGAGAAAAAG+AGG | + | chr6_2:66020991-66021010 | Msa0924230:intron | 45.0% | |
| !! | GAGGAGGCACCAAAATATTG+TGG | + | chr6_2:66021010-66021029 | Msa0924230:CDS | 45.0% |
| ! | CCATGTTCAACTCCTTTTGG+TGG | - | chr6_2:66021046-66021065 | None:intergenic | 45.0% |
| CCACCAAAAGGAGTTGAACA+TGG | + | chr6_2:66021043-66021062 | Msa0924230:CDS | 45.0% | |
| ATCCGGTGCTCTTAGTTACA+TGG | + | chr6_2:66021297-66021316 | Msa0924230:intron | 45.0% | |
| AGAAGGCGATTCCAATGCTA+AGG | + | chr6_2:66021611-66021630 | Msa0924230:intron | 45.0% | |
| TTTGACCGAAGAGCAGAAGA+AGG | + | chr6_2:66021780-66021799 | Msa0924230:intron | 45.0% | |
| AAGGTGGAGGAAGTTGACAA+AGG | + | chr6_2:66021799-66021818 | Msa0924230:intron | 45.0% | |
| GTTGGATGAAAACGGAAACC+TGG | - | chr6_2:66021867-66021886 | None:intergenic | 45.0% | |
| TCTGATCCTTGGGATTTACC+TGG | + | chr6_2:66021978-66021997 | Msa0924230:CDS | 45.0% | |
| TGCATACCAGGTAAATCCCA+AGG | - | chr6_2:66021987-66022006 | None:intergenic | 45.0% | |
| TGAAGTTGTTGGAAGGCAAC+TGG | + | chr6_2:66022285-66022304 | Msa0924230:CDS | 45.0% | |
| CAGTGGCAACAACTTTGGTT+AGG | + | chr6_2:66022415-66022434 | Msa0924230:CDS | 45.0% | |
| ACCTCCTTATGTGCTGCAGA+AGG | + | chr6_2:66019515-66019534 | Msa0924230:CDS | 50.0% | |
| ACCTTCTGCAGCACATAAGG+AGG | - | chr6_2:66019519-66019538 | None:intergenic | 50.0% | |
| ! | GCACGTGACATTGGTGACAT+TGG | + | chr6_2:66019788-66019807 | Msa0924230:intron | 50.0% |
| GACACATTTGAACTCTGGCC+GGG | - | chr6_2:66020577-66020596 | None:intergenic | 50.0% | |
| GGACACATTTGAACTCTGGC+CGG | - | chr6_2:66020578-66020597 | None:intergenic | 50.0% | |
| !! | AGTCTTCTAGGACGACCTGA+AGG | - | chr6_2:66020837-66020856 | None:intergenic | 50.0% |
| GCACTAGGGAGAAAAAGAGG+AGG | + | chr6_2:66020994-66021013 | Msa0924230:intron | 50.0% | |
| GCACCAAAATATTGTGGGCG+TGG | + | chr6_2:66021016-66021035 | Msa0924230:CDS | 50.0% | |
| ! | CGACCACGCCCACAATATTT+TGG | - | chr6_2:66021022-66021041 | None:intergenic | 50.0% |
| TGAACCACCTACTCTCGCAA+AGG | + | chr6_2:66021069-66021088 | Msa0924230:CDS | 50.0% | |
| GATGCTACCTTTGCGAGAGT+AGG | - | chr6_2:66021079-66021098 | None:intergenic | 50.0% | |
| CTCCACCTTCTTCTGCTCTT+CGG | - | chr6_2:66021788-66021807 | None:intergenic | 50.0% | |
| GGATGAAAACGGAAACCTGG+TGG | - | chr6_2:66021864-66021883 | None:intergenic | 50.0% | |
| GTTGTTGGAAGGCAACTGGA+AGG | + | chr6_2:66022289-66022308 | Msa0924230:CDS | 50.0% | |
| AAGGCAACTGGAAGGCAACA+TGG | + | chr6_2:66022297-66022316 | Msa0924230:CDS | 50.0% | |
| AAAGGAGTGAAGCCAAGCAG+TGG | + | chr6_2:66022398-66022417 | Msa0924230:CDS | 50.0% | |
| CCAAAGTTGTTGCCACTGCT+TGG | - | chr6_2:66022413-66022432 | None:intergenic | 50.0% | |
| CCAAGCAGTGGCAACAACTT+TGG | + | chr6_2:66022410-66022429 | Msa0924230:CDS | 50.0% | |
| GGTCGTCCACCAAAACAACC+CGG | + | chr6_2:66020556-66020575 | Msa0924230:CDS | 55.0% | |
| ! | GAACTCTGGCCGGGTTGTTT+TGG | - | chr6_2:66020568-66020587 | None:intergenic | 55.0% |
| GGACGACCTGAAGGACGTTT+GGG | - | chr6_2:66020828-66020847 | None:intergenic | 55.0% | |
| AGGACGACCTGAAGGACGTT+TGG | - | chr6_2:66020829-66020848 | None:intergenic | 55.0% | |
| GCTACCTTTGCGAGAGTAGG+TGG | - | chr6_2:66021076-66021095 | None:intergenic | 55.0% | |
| GACCGAAGAGCAGAAGAAGG+TGG | + | chr6_2:66021783-66021802 | Msa0924230:intron | 55.0% | |
| CGAAGAGCAGAAGAAGGTGG+AGG | + | chr6_2:66021786-66021805 | Msa0924230:intron | 55.0% | |
| GGTGAAGTGAGATTGCCACC+AGG | + | chr6_2:66021846-66021865 | Msa0924230:CDS | 55.0% | |
| CACGGGGTAGCACGTGACAT+TGG | + | chr6_2:66019779-66019798 | Msa0924230:intron | 60.0% | |
| !!! | CTCTGGCCGGGTTGTTTTGG+TGG | - | chr6_2:66020565-66020584 | None:intergenic | 60.0% |
| GAGGCTCCCAAACGTCCTTC+AGG | + | chr6_2:66020819-66020838 | Msa0924230:CDS | 60.0% | |
| GGGCGTGGTCGTCCACCAAA+AGG | + | chr6_2:66020550-66020569 | Msa0924230:CDS | 65.0% | |
| CGGAGCCGCCTGTACGTCGT+GGG | + | chr6_2:66020524-66020543 | Msa0924230:CDS | 70.0% | |
| CCACGCCCACGACGTACAGG+CGG | - | chr6_2:66020532-66020551 | None:intergenic | 70.0% | |
| CGCCTGTACGTCGTGGGCGT+GGG | + | chr6_2:66020530-66020549 | Msa0924230:CDS | 70.0% | |
| GCGGAGCCGCCTGTACGTCG+TGG | + | chr6_2:66020523-66020542 | Msa0924230:CDS | 75.0% | |
| CCGCCTGTACGTCGTGGGCG+TGG | + | chr6_2:66020529-66020548 | Msa0924230:CDS | 75.0% | |
| CGCCCACGCCCACGACGTAC+AGG | - | chr6_2:66020535-66020554 | None:intergenic | 75.0% | |
| GTACGTCGTGGGCGTGGGCG+TGG | + | chr6_2:66020535-66020554 | Msa0924230:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 66019488 | 66022486 | 66019488 | ID=Msa0924230;Name=Msa0924230 |
| chr6_2 | mRNA | 66019488 | 66022486 | 66019488 | ID=Msa0924230-mRNA-1;Parent=Msa0924230;Name=Msa0924230-mRNA-1;_AED=0.39;_eAED=0.39;_QI=0|0|0|0.33|1|1|6|0|229 |
| chr6_2 | exon | 66019488 | 66019536 | 66019488 | ID=Msa0924230-mRNA-1:exon:10442;Parent=Msa0924230-mRNA-1 |
| chr6_2 | exon | 66020515 | 66020609 | 66020515 | ID=Msa0924230-mRNA-1:exon:10443;Parent=Msa0924230-mRNA-1 |
| chr6_2 | exon | 66020807 | 66020866 | 66020807 | ID=Msa0924230-mRNA-1:exon:10444;Parent=Msa0924230-mRNA-1 |
| chr6_2 | exon | 66021001 | 66021090 | 66021001 | ID=Msa0924230-mRNA-1:exon:10445;Parent=Msa0924230-mRNA-1 |
| chr6_2 | exon | 66021843 | 66021999 | 66021843 | ID=Msa0924230-mRNA-1:exon:10446;Parent=Msa0924230-mRNA-1 |
| chr6_2 | exon | 66022248 | 66022486 | 66022248 | ID=Msa0924230-mRNA-1:exon:10447;Parent=Msa0924230-mRNA-1 |
| chr6_2 | CDS | 66019488 | 66019536 | 66019488 | ID=Msa0924230-mRNA-1:cds;Parent=Msa0924230-mRNA-1 |
| chr6_2 | CDS | 66020515 | 66020609 | 66020515 | ID=Msa0924230-mRNA-1:cds;Parent=Msa0924230-mRNA-1 |
| chr6_2 | CDS | 66020807 | 66020866 | 66020807 | ID=Msa0924230-mRNA-1:cds;Parent=Msa0924230-mRNA-1 |
| chr6_2 | CDS | 66021001 | 66021090 | 66021001 | ID=Msa0924230-mRNA-1:cds;Parent=Msa0924230-mRNA-1 |
| chr6_2 | CDS | 66021843 | 66021999 | 66021843 | ID=Msa0924230-mRNA-1:cds;Parent=Msa0924230-mRNA-1 |
| chr6_2 | CDS | 66022248 | 66022486 | 66022248 | ID=Msa0924230-mRNA-1:cds;Parent=Msa0924230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
