AlfalfaGEDB | Msa0924230

M. sativa cultivar zhongmu-4 / Msa0924230

KEGG: -
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009835 GO:0009889 GO:0009908 GO:0009987 GO:0010150 GO:0010154 GO:0010468 GO:0010556 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071695 GO:0080090 GO:0090567 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02365.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0924230	TKS08620.1	61.818	110	24	3	95	200	5	100	6.81e-33	127

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0924230	sp\|Q9FY93\|NAC83_ARATH	76.364	55	13	0	96	150	6	60	2.40e-21	92.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa0924230	TF	NAC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0924230	MtrunA17_Chr7g0214071	89.091	55	6	96	150	7	61	2.24e-28	107
Msa0924230	MtrunA17_Chr8g0385991	67.857	56	18	95	150	5	60	1.28e-19	84.0
Msa0924230	MtrunA17_Chr3g0131911	59.322	59	24	92	150	2	60	1.52e-17	78.6
Msa0924230	MtrunA17_Chr2g0318101	67.347	49	16	103	151	14	62	4.58e-15	73.2
Msa0924230	MtrunA17_Chr4g0047841	68.750	48	15	103	150	14	61	8.98e-15	72.4
Msa0924230	MtrunA17_Chr7g0252971	56.863	51	22	101	151	5	55	1.03e-14	72.0
Msa0924230	MtrunA17_Chr7g0263931	55.769	52	23	99	150	6	57	5.81e-14	69.7
Msa0924230	MtrunA17_Chr3g0124761	60.784	51	20	100	150	3	53	5.12e-13	67.0
Msa0924230	MtrunA17_Chr4g0042561	54.545	55	25	96	150	1	55	5.93e-13	66.6
Msa0924230	MtrunA17_Chr5g0417791	61.224	49	19	102	150	1	49	6.96e-13	66.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0924230	AT5G13180.1	76.364	55	13	0	96	150	6	60	2.44e-22	92.0
Msa0924230	AT2G33480.1	67.857	56	18	0	95	150	6	61	2.23e-20	87.0
Msa0924230	AT2G33480.2	67.857	56	18	0	95	150	6	61	2.39e-20	87.0
Msa0924230	AT3G04070.1	57.143	56	24	0	96	151	2	57	5.56e-15	73.6
Msa0924230	AT3G04070.2	57.143	56	24	0	96	151	2	57	5.89e-15	73.2
Msa0924230	AT1G61110.1	64.706	51	18	0	100	150	12	62	2.28e-14	71.2
Msa0924230	AT4G27410.3	44.595	74	40	1	100	172	10	83	5.93e-13	67.4
Msa0924230	AT1G77450.1	54.545	55	25	0	96	150	2	56	6.06e-13	66.6
Msa0924230	AT1G69490.1	61.702	47	18	0	104	150	9	55	8.96e-13	66.2
Msa0924230	AT1G65910.1	59.184	49	20	0	102	150	4	52	1.21e-12	67.0

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Find 63 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGAGAAGACAGTGAA+AGG	0.579735	6_2:+66022380	Msa0924230:CDS
AAAGAAGCCAAGTATCCAAA+TGG	0.440359	6_2:+66022252	Msa0924230:CDS
AAAGGAGTGAAGCCAAGCAG+TGG	0.615889	6_2:+66022398	Msa0924230:CDS
AAATGTGTCCAACCTCAAAA+AGG	0.432562	6_2:+66020588	Msa0924230:CDS
AAGAAGCCAAGTATCCAAAT+GGG	0.526074	6_2:+66022253	Msa0924230:CDS
AAGGCAACTGGAAGGCAACA+TGG	0.580590	6_2:+66022297	Msa0924230:CDS
AATACACACACTACCTGTTG+AGG	0.606699	6_2:-66020858	None:intergenic
ACAACATGTACTTCATCTGT+TGG	0.542137	6_2:-66021882	None:intergenic
ACCTCCTTATGTGCTGCAGA+AGG	0.585928	6_2:+66019515	Msa0924230:CDS
ACCTGTTGAGGTAGTCTTCT+AGG	0.362665	6_2:-66020846	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAACCACTTGTGATATTG+TGG	-	chr6_2:66019818-66019837	None:intergenic	30.0%
AAGAATTGTGACATTGTGAT+TGG	+	chr6_2:66019853-66019872	Msa0924230:intron	30.0%
ACATGCTTACTTTGTGAAAA+TGG	-	chr6_2:66020177-66020196	None:intergenic	30.0%
TGTTCATTTCTCGAAAACTA+AGG	-	chr6_2:66020200-66020219	None:intergenic	30.0%
ACTGTATGATTAGAAATGGA+TGG	+	chr6_2:66020246-66020265	Msa0924230:intron	30.0%
GTAATACCTCACTTCAAAAA+TGG	-	chr6_2:66020742-66020761	None:intergenic	30.0%
GCAACACAAATTTAGCTATA+TGG	-	chr6_2:66020976-66020995	None:intergenic	30.0%
AGACTCAAAATTTCATCATC+CGG	+	chr6_2:66021280-66021299	Msa0924230:intron	30.0%
ATCTAAAGATGATGCATTTC+TGG	-	chr6_2:66021345-66021364	None:intergenic	30.0%
ACTGTATGATTAGAAATGGA+TGG	+	chr6_2:66020246-66020265	Msa0924230:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_2	gene	66019488	66022486	66019488	ID=Msa0924230;Name=Msa0924230
chr6_2	mRNA	66019488	66022486	66019488	ID=Msa0924230-mRNA-1;Parent=Msa0924230;Name=Msa0924230-mRNA-1;_AED=0.39;_eAED=0.39;_QI=0\|0\|0\|0.33\|1\|1\|6\|0\|229
chr6_2	exon	66019488	66019536	66019488	ID=Msa0924230-mRNA-1:exon:10442;Parent=Msa0924230-mRNA-1
chr6_2	exon	66020515	66020609	66020515	ID=Msa0924230-mRNA-1:exon:10443;Parent=Msa0924230-mRNA-1
chr6_2	exon	66020807	66020866	66020807	ID=Msa0924230-mRNA-1:exon:10444;Parent=Msa0924230-mRNA-1
chr6_2	exon	66021001	66021090	66021001	ID=Msa0924230-mRNA-1:exon:10445;Parent=Msa0924230-mRNA-1
chr6_2	exon	66021843	66021999	66021843	ID=Msa0924230-mRNA-1:exon:10446;Parent=Msa0924230-mRNA-1
chr6_2	exon	66022248	66022486	66022248	ID=Msa0924230-mRNA-1:exon:10447;Parent=Msa0924230-mRNA-1
chr6_2	CDS	66019488	66019536	66019488	ID=Msa0924230-mRNA-1:cds;Parent=Msa0924230-mRNA-1
chr6_2	CDS	66020515	66020609	66020515	ID=Msa0924230-mRNA-1:cds;Parent=Msa0924230-mRNA-1
chr6_2	CDS	66020807	66020866	66020807	ID=Msa0924230-mRNA-1:cds;Parent=Msa0924230-mRNA-1
chr6_2	CDS	66021001	66021090	66021001	ID=Msa0924230-mRNA-1:cds;Parent=Msa0924230-mRNA-1
chr6_2	CDS	66021843	66021999	66021843	ID=Msa0924230-mRNA-1:cds;Parent=Msa0924230-mRNA-1
chr6_2	CDS	66022248	66022486	66022248	ID=Msa0924230-mRNA-1:cds;Parent=Msa0924230-mRNA-1

Gene Sequence

>Msa0924230

ATGGTGCTAGAGCTATGGTCGAAATCAACCTCCTTATGTGCTGCAGAAGGAGATAGAGCGGAGCCGCCTGTACGTCGTGGGCGTGGGCGTGGTCGTCCACCAAAACAACCCGGCCAGAGTTCAAATGTGTCCAACCTCAAAAAGGGAGATAAAGATGAGGCTCCCAAACGTCCTTCAGGTCGTCCTAGAAGACTACCTCAACAGGGAGAAAAAGAGGAGGCACCAAAATATTGTGGGCGTGGTCGTCCACCAAAAGGAGTTGAACATGGACATGAACCACCTACTCTCGCAAAGAATGGTGAAGTGAGATTGCCACCAGGTTTCCGTTTTCATCCAACAGATGAAGTACATGTTGTTCAATATTTGAAGCGTAAGGTCTTCTCTTTCCCTTTACCTGCTTTCATCATTCCTAAAGTTGATCTTTGCAAGTCTGATCCTTGGGATTTACCTGTACTAAAGAAGCCAAGTATCCAAATGGGAAGAAGTTGTGAAGTTGTTGGAAGGCAACTGGAAGGCAACATGGTTTTGCAGAATGAAAATTGGGTTCTGTGTCGCATATTTCTGAAGAGGAGAGATGGTGCTAAAAATGGAGAAGACAGTGAAAGGAGTGAAGCCAAGCAGTGGCAACAACTTTGGTTAGGTGAAGAAGAAGAACTCAGCTTCAAGTTCAAAAGTGGTTGTTTTCTATGA

Protein sequence

>Msa0924230

MVLELWSKSTSLCAAEGDRAEPPVRRGRGRGRPPKQPGQSSNVSNLKKGDKDEAPKRPSGRPRRLPQQGEKEEAPKYCGRGRPPKGVEHGHEPPTLAKNGEVRLPPGFRFHPTDEVHVVQYLKRKVFSFPLPAFIIPKVDLCKSDPWDLPVLKKPSIQMGRSCEVVGRQLEGNMVLQNENWVLCRIFLKRRDGAKNGEDSERSEAKQWQQLWLGEEEELSFKFKSGCFL*