AlfalfaGEDB | Msa0924710

M. sativa cultivar zhongmu-4 / Msa0924710

KEGG: K15032
GO: -
PFAM: PF02536.17

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0924710	GAU30764.1	76.000	75	16	1	1	75	254	326	3.38e-26	110

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0924710	TR	mTERF

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0924710	MtrunA17_Chr8g0339041	72.000	75	19	1	1	75	254	326	4.16e-28	104

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Find 11 sgRNAs with CRISPR-Local

Find 100 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACTGAAAAGTTCAAGTGAC+TGG	0.468045	6_2:+67192433	None:intergenic
AGCAATGAAGATACAAGATA+TGG	0.431980	6_2:-67193435	Msa0924710:CDS
CAGCACTAAGTGATTTGAGA+AGG	0.593912	6_2:+67192490	None:intergenic
CATTGAGGATGTCAGAGGAG+AGG	0.607342	6_2:-67193373	Msa0924710:intron
GCTCAATACTTGGAGCATTG+AGG	0.621022	6_2:-67193388	Msa0924710:CDS
TATGACATTGTCAACTGATA+AGG	0.410089	6_2:-67193576	Msa0924710:CDS
TCACGCACACGCTCAATACT+TGG	0.430841	6_2:-67193398	Msa0924710:CDS
TGGAGCATTGAGGATGTCAG+AGG	0.663911	6_2:-67193378	Msa0924710:CDS
TGTCAACTGATAAGGTTCAG+TGG	0.649714	6_2:-67193568	Msa0924710:CDS
TTCATTGCTGTAAGCACTCG+TGG	0.533120	6_2:+67193449	None:intergenic

Showing 1 to 10 of 11 entries

Previous1 2Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AGCAATGAAGATACAAGATA+TGG	-	chr6_2:67192565-67192584	Msa0924710:intron	30.0%
TTCAGATCCACTGAAAATAA+AGG	-	chr6_2:67193358-67193377	Msa0924710:intron	30.0%
AGCAATGAAGATACAAGATA+TGG	-	chr6_2:67192565-67192584	Msa0924710:intron	30.0%
TTCAGATCCACTGAAAATAA+AGG	-	chr6_2:67193358-67193377	Msa0924710:intron	30.0%
CATAAGCAATTTCCTTGTCA+TGG	+	chr6_2:67192676-67192695	None:intergenic	35.0%
AAGTTCTGTATTCCAAACAG+AGG	-	chr6_2:67192799-67192818	Msa0924710:intron	35.0%
TTTCTGCCATTGTGAAAACA+TGG	+	chr6_2:67193537-67193556	None:intergenic	35.0%
AACTGAAAAGTTCAAGTGAC+TGG	+	chr6_2:67193570-67193589	None:intergenic	35.0%
CATAAGCAATTTCCTTGTCA+TGG	+	chr6_2:67192676-67192695	None:intergenic	35.0%
AAGTTCTGTATTCCAAACAG+AGG	-	chr6_2:67192799-67192818	Msa0924710:intron	35.0%

Showing 1 to 10 of 100 entries

Previous1 2 3 4 5…10Next

Chromosome	Type	Strat	End	Strand	Name
chr6_2	gene	67192425	67193597	67192425	ID=Msa0924710;Name=Msa0924710
chr6_2	mRNA	67192425	67193597	67192425	ID=Msa0924710-mRNA-1;Parent=Msa0924710;Name=Msa0924710-mRNA-1;_AED=0.42;_eAED=0.42;_QI=0\|0\|0\|1\|0\|0.5\|2\|0\|107
chr6_2	exon	67193374	67193597	67193374	ID=Msa0924710-mRNA-1:exon:10619;Parent=Msa0924710-mRNA-1
chr6_2	exon	67192425	67192521	67192425	ID=Msa0924710-mRNA-1:exon:10618;Parent=Msa0924710-mRNA-1
chr6_2	CDS	67193374	67193597	67193374	ID=Msa0924710-mRNA-1:cds;Parent=Msa0924710-mRNA-1
chr6_2	CDS	67192425	67192521	67192425	ID=Msa0924710-mRNA-1:cds;Parent=Msa0924710-mRNA-1

Gene Sequence	>Msa0924710 ATGACATTGTCAACTGATAAGGTTCAGTGGAACATTACTTTCATTTTAGGCACAATGAAGCTTGAAGCTAAGATAATCTTAAAGTACCCATTTTTCTTGTTTGCAGATATGGAGACTGTTTTGAAGCCACGAGTGCTTACAGCAATGAAGATACAAGATATGGATTTTAAGTTGAAATCACGCACACGCTCAATACTTGGAGCATTGAGGATGTCAGAGGAGAGAGATGAACGCCTTCTCAAATCACTTAGTGCTGACCATGTTTTCACAATGGCAGAAATGAACGAAAACCAGTCACTTGAACTTTTCAGTTTGCAAACT
Protein sequence	>Msa0924710 MTLSTDKVQWNITFILGTMKLEAKIILKYPFFLFADMETVLKPRVLTAMKIQDMDFKLKSRTRSILGALRMSEERDERLLKSLSADHVFTMAEMNENQSLELFSLQT