Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0925240 | ABD33026.2 | 70.935 | 781 | 202 | 4 | 2 | 774 | 352 | 1115 | 0.0 | 1172 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0925240 | sp|Q9SWG3|FAR1_ARATH | 31.030 | 738 | 469 | 12 | 2 | 732 | 51 | 755 | 2.35e-120 | 384 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|---|---|
Msa0925240 | TF | FAR1 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0925240 | MtrunA17_Chr2g0296781 | 74.650 | 714 | 172 | 4 | 8 | 713 | 3 | 715 | 0.0 | 1112 |
Msa0925240 | MtrunA17_Chr6g0477261 | 73.758 | 644 | 150 | 5 | 117 | 742 | 1 | 643 | 0.0 | 962 |
Msa0925240 | MtrunA17_Chr1g0196541 | 61.558 | 770 | 253 | 5 | 8 | 775 | 3 | 731 | 0.0 | 951 |
Msa0925240 | MtrunA17_Chr5g0441581 | 47.573 | 618 | 310 | 5 | 2 | 616 | 32 | 638 | 0.0 | 586 |
Msa0925240 | MtrunA17_Chr2g0291581 | 37.193 | 570 | 331 | 10 | 2 | 562 | 71 | 622 | 2.08e-124 | 388 |
Msa0925240 | MtrunA17_Chr5g0448761 | 36.934 | 574 | 340 | 12 | 2 | 561 | 60 | 625 | 1.62e-119 | 378 |
Msa0925240 | MtrunA17_Chr2g0329031 | 36.444 | 568 | 331 | 10 | 8 | 566 | 20 | 566 | 8.70e-119 | 375 |
Msa0925240 | MtrunA17_Chr1g0207551 | 36.824 | 573 | 336 | 7 | 2 | 563 | 34 | 591 | 1.42e-118 | 376 |
Msa0925240 | MtrunA17_Chr1g0202341 | 36.979 | 576 | 332 | 13 | 2 | 562 | 51 | 610 | 8.62e-117 | 368 |
Msa0925240 | MtrunA17_Chr3g0080351 | 34.653 | 606 | 341 | 9 | 2 | 587 | 76 | 646 | 5.12e-114 | 365 |
Msa0925240 | MtrunA17_Chr2g0291591 | 36.059 | 477 | 299 | 3 | 2 | 475 | 64 | 537 | 1.02e-102 | 327 |
Msa0925240 | MtrunA17_Chr5g0440451 | 32.683 | 615 | 358 | 16 | 2 | 587 | 43 | 630 | 2.36e-96 | 320 |
Msa0925240 | MtrunA17_Chr3g0118611 | 37.981 | 416 | 238 | 7 | 171 | 582 | 118 | 517 | 1.77e-87 | 293 |
Msa0925240 | MtrunA17_Chr5g0448511 | 35.840 | 399 | 248 | 5 | 159 | 556 | 1 | 392 | 5.24e-86 | 283 |
Msa0925240 | MtrunA17_Chr8g0363841 | 30.556 | 576 | 365 | 7 | 4 | 561 | 19 | 577 | 5.48e-84 | 281 |
Msa0925240 | MtrunA17_Chr6g0476441 | 51.034 | 290 | 103 | 5 | 501 | 752 | 1 | 289 | 1.23e-80 | 260 |
Msa0925240 | MtrunA17_Chr2g0287651 | 27.460 | 630 | 425 | 10 | 8 | 622 | 81 | 693 | 5.86e-79 | 271 |
Msa0925240 | MtrunA17_Chr2g0324011 | 29.268 | 574 | 377 | 11 | 2 | 561 | 10 | 568 | 7.30e-79 | 265 |
Msa0925240 | MtrunA17_Chr2g0287061 | 31.588 | 573 | 321 | 14 | 2 | 559 | 183 | 699 | 1.37e-75 | 261 |
Msa0925240 | MtrunA17_Chr1g0198761 | 30.159 | 693 | 406 | 23 | 5 | 657 | 50 | 704 | 1.91e-75 | 259 |
Msa0925240 | MtrunA17_Chr1g0203051 | 28.885 | 547 | 362 | 13 | 8 | 542 | 85 | 616 | 4.37e-69 | 239 |
Msa0925240 | MtrunA17_Chr2g0276841 | 27.806 | 597 | 353 | 20 | 1 | 558 | 69 | 626 | 1.41e-65 | 231 |
Msa0925240 | MtrunA17_Chr6g0458391 | 26.923 | 572 | 377 | 10 | 1 | 561 | 224 | 765 | 8.86e-63 | 224 |
Msa0925240 | MtrunA17_Chr1g0203721 | 28.201 | 578 | 376 | 13 | 4 | 561 | 65 | 623 | 1.11e-62 | 226 |
Msa0925240 | MtrunA17_Chr3g0082121 | 30.192 | 573 | 364 | 15 | 1 | 561 | 42 | 590 | 1.83e-62 | 223 |
Msa0925240 | MtrunA17_Chr2g0294841 | 24.932 | 738 | 463 | 22 | 1 | 689 | 44 | 739 | 1.33e-55 | 204 |
Msa0925240 | MtrunA17_Chr5g0431001 | 32.414 | 435 | 254 | 14 | 1 | 407 | 60 | 482 | 5.68e-55 | 197 |
Msa0925240 | MtrunA17_Chr2g0290391 | 26.109 | 586 | 380 | 19 | 2 | 559 | 51 | 611 | 3.92e-46 | 176 |
Msa0925240 | MtrunA17_Chr1g0164591 | 33.131 | 329 | 178 | 9 | 80 | 389 | 3 | 308 | 5.79e-46 | 167 |
Msa0925240 | MtrunA17_Chr7g0258861 | 30.742 | 283 | 183 | 5 | 2 | 274 | 10 | 289 | 1.83e-39 | 148 |
Msa0925240 | MtrunA17_Chr6g0476431 | 63.095 | 84 | 31 | 0 | 8 | 91 | 3 | 86 | 4.24e-31 | 117 |
Msa0925240 | MtrunA17_Chr6g0451441 | 32.121 | 165 | 105 | 4 | 2 | 163 | 87 | 247 | 8.11e-19 | 90.5 |
Msa0925240 | MtrunA17_Chr2g0308841 | 26.941 | 219 | 143 | 5 | 346 | 558 | 17 | 224 | 1.61e-15 | 77.4 |
Msa0925240 | MtrunA17_Chr1g0172041 | 31.818 | 110 | 74 | 1 | 475 | 584 | 3 | 111 | 6.34e-15 | 71.6 |
Msa0925240 | MtrunA17_Chr3g0077731 | 50.926 | 108 | 44 | 3 | 614 | 713 | 1 | 107 | 8.19e-13 | 65.9 |
Msa0925240 | MtrunA17_Chr1g0149131 | 30.000 | 110 | 76 | 1 | 276 | 384 | 1 | 110 | 5.18e-11 | 60.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0925240 | AT4G15090.1 | 31.030 | 738 | 469 | 12 | 2 | 732 | 51 | 755 | 2.39e-121 | 384 |
Msa0925240 | AT4G15090.5 | 31.030 | 738 | 469 | 12 | 2 | 732 | 51 | 755 | 2.39e-121 | 384 |
Msa0925240 | AT4G15090.3 | 31.030 | 738 | 469 | 12 | 2 | 732 | 51 | 755 | 2.39e-121 | 384 |
Msa0925240 | AT4G15090.2 | 31.030 | 738 | 469 | 12 | 2 | 732 | 51 | 755 | 2.39e-121 | 384 |
Msa0925240 | AT4G15090.4 | 31.030 | 738 | 469 | 12 | 2 | 732 | 51 | 755 | 2.39e-121 | 384 |
Msa0925240 | AT4G38180.1 | 35.951 | 573 | 343 | 10 | 2 | 561 | 73 | 634 | 1.02e-116 | 371 |
Msa0925240 | AT1G76320.3 | 35.201 | 571 | 334 | 9 | 8 | 566 | 3 | 549 | 1.09e-111 | 355 |
Msa0925240 | AT1G76320.2 | 35.201 | 571 | 334 | 9 | 8 | 566 | 3 | 549 | 1.74e-111 | 356 |
Msa0925240 | AT1G76320.1 | 35.201 | 571 | 334 | 9 | 8 | 566 | 3 | 549 | 1.81e-111 | 356 |
Msa0925240 | AT1G76320.4 | 35.201 | 571 | 334 | 9 | 8 | 566 | 3 | 549 | 1.81e-111 | 356 |
Msa0925240 | AT1G52520.1 | 34.790 | 572 | 349 | 13 | 2 | 564 | 85 | 641 | 1.56e-110 | 352 |
Msa0925240 | AT3G22170.2 | 34.079 | 581 | 336 | 9 | 2 | 564 | 70 | 621 | 2.74e-109 | 353 |
Msa0925240 | AT3G22170.1 | 34.079 | 581 | 336 | 9 | 2 | 564 | 70 | 621 | 2.74e-109 | 353 |
Msa0925240 | AT1G80010.1 | 32.927 | 574 | 366 | 11 | 2 | 562 | 95 | 662 | 1.06e-98 | 322 |
Msa0925240 | AT4G19990.3 | 33.333 | 582 | 327 | 13 | 5 | 566 | 24 | 564 | 2.51e-93 | 308 |
Msa0925240 | AT4G19990.4 | 33.333 | 582 | 327 | 13 | 5 | 566 | 24 | 564 | 2.51e-93 | 308 |
Msa0925240 | AT4G19990.7 | 33.333 | 582 | 327 | 13 | 5 | 566 | 38 | 578 | 3.89e-93 | 308 |
Msa0925240 | AT4G19990.5 | 33.333 | 582 | 327 | 13 | 5 | 566 | 24 | 564 | 3.95e-93 | 308 |
Msa0925240 | AT4G19990.6 | 33.333 | 582 | 327 | 13 | 5 | 566 | 24 | 564 | 6.18e-93 | 308 |
Msa0925240 | AT4G19990.2 | 33.333 | 582 | 327 | 13 | 5 | 566 | 24 | 564 | 6.18e-93 | 308 |
Msa0925240 | AT2G27110.2 | 32.574 | 571 | 334 | 14 | 2 | 561 | 49 | 579 | 1.20e-88 | 298 |
Msa0925240 | AT2G27110.1 | 32.574 | 571 | 334 | 14 | 2 | 561 | 49 | 579 | 1.20e-88 | 298 |
Msa0925240 | AT4G19990.1 | 37.713 | 411 | 247 | 5 | 159 | 566 | 103 | 507 | 1.72e-88 | 294 |
Msa0925240 | AT2G32250.7 | 35.147 | 441 | 267 | 7 | 178 | 613 | 135 | 561 | 1.35e-86 | 290 |
Msa0925240 | AT2G32250.5 | 35.147 | 441 | 267 | 7 | 178 | 613 | 176 | 602 | 1.38e-86 | 290 |
Msa0925240 | AT2G32250.8 | 35.147 | 441 | 267 | 7 | 178 | 613 | 135 | 561 | 1.44e-86 | 290 |
Msa0925240 | AT2G32250.2 | 35.147 | 441 | 267 | 7 | 178 | 613 | 176 | 602 | 2.81e-86 | 291 |
Msa0925240 | AT2G32250.4 | 35.147 | 441 | 267 | 7 | 178 | 613 | 176 | 602 | 2.81e-86 | 291 |
Msa0925240 | AT2G32250.6 | 35.147 | 441 | 267 | 7 | 178 | 613 | 176 | 602 | 2.98e-86 | 291 |
Msa0925240 | AT2G32250.1 | 35.147 | 441 | 267 | 7 | 178 | 613 | 176 | 602 | 2.98e-86 | 291 |
Msa0925240 | AT2G32250.3 | 35.147 | 441 | 267 | 7 | 178 | 613 | 176 | 602 | 2.98e-86 | 291 |
Msa0925240 | AT2G27110.3 | 35.374 | 441 | 260 | 9 | 126 | 561 | 14 | 434 | 1.09e-83 | 281 |
Msa0925240 | AT4G38170.1 | 34.466 | 412 | 252 | 8 | 167 | 573 | 13 | 411 | 4.70e-78 | 262 |
Msa0925240 | AT3G06250.2 | 30.249 | 562 | 339 | 11 | 2 | 559 | 190 | 702 | 4.19e-76 | 262 |
Msa0925240 | AT3G06250.1 | 30.249 | 562 | 339 | 11 | 2 | 559 | 190 | 702 | 4.19e-76 | 262 |
Msa0925240 | AT3G06250.3 | 30.249 | 562 | 339 | 11 | 2 | 559 | 190 | 702 | 4.19e-76 | 262 |
Msa0925240 | AT5G18960.2 | 30.688 | 567 | 333 | 14 | 2 | 559 | 211 | 726 | 2.02e-75 | 261 |
Msa0925240 | AT5G18960.1 | 30.688 | 567 | 333 | 14 | 2 | 559 | 211 | 726 | 2.02e-75 | 261 |
Msa0925240 | AT1G10240.2 | 27.973 | 597 | 352 | 21 | 1 | 558 | 47 | 604 | 1.02e-64 | 229 |
Msa0925240 | AT1G10240.1 | 27.973 | 597 | 352 | 21 | 1 | 558 | 47 | 604 | 1.02e-64 | 229 |
Msa0925240 | AT5G28530.3 | 26.825 | 589 | 372 | 18 | 2 | 559 | 55 | 615 | 2.27e-50 | 188 |
Msa0925240 | AT5G28530.2 | 26.825 | 589 | 372 | 18 | 2 | 559 | 55 | 615 | 2.27e-50 | 188 |
Msa0925240 | AT5G28530.1 | 26.813 | 593 | 371 | 19 | 2 | 559 | 55 | 619 | 1.21e-49 | 186 |
Msa0925240 | AT5G28530.5 | 24.610 | 577 | 337 | 20 | 2 | 559 | 55 | 552 | 1.90e-33 | 137 |
Msa0925240 | AT5G28530.4 | 24.613 | 581 | 336 | 21 | 2 | 559 | 55 | 556 | 1.29e-32 | 134 |
Find 110 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGCATTGGTGAATGCTTTC+TGG | 0.174694 | 6_2:+68154791 | None:intergenic |
CCATCTTCTTCTATAATTTC+AGG | 0.175398 | 6_2:+68154277 | None:intergenic |
CATATGTGAGAGACACATTT+TGG | 0.184902 | 6_2:-68155017 | Msa0925240:CDS |
TATCAAAACCACATTTAATA+AGG | 0.185554 | 6_2:+68154455 | None:intergenic |
TCACTCATAAGTATTGAATT+TGG | 0.202186 | 6_2:+68153785 | None:intergenic |
CAACCTCCACTTGAAATTCT+TGG | 0.215469 | 6_2:+68154764 | None:intergenic |
GTCGTTTAAGAAATGTATTT+TGG | 0.215986 | 6_2:-68155554 | Msa0925240:CDS |
AAGGAAAACATGGCTGATTT+TGG | 0.228183 | 6_2:-68154868 | Msa0925240:CDS |
CACCATCGATGGCGAGCTTT+TGG | 0.238537 | 6_2:+68155249 | None:intergenic |
TTTGAGTAAAAGTGATTTCA+TGG | 0.249102 | 6_2:-68155130 | Msa0925240:CDS |
ATAGCTTGTGTAAGTCATTT+TGG | 0.262515 | 6_2:-68154829 | Msa0925240:CDS |
CGTAGAAGCAACTTCGTAAA+AGG | 0.287052 | 6_2:+68154384 | None:intergenic |
TTCATGACTTGAGGATAAAA+TGG | 0.287642 | 6_2:+68153667 | None:intergenic |
AATGCGTGTATTTCTTTAGA+AGG | 0.294331 | 6_2:-68155921 | Msa0925240:CDS |
CTTTGTGTGCTTAAGCTAAC+AGG | 0.298887 | 6_2:-68154547 | Msa0925240:CDS |
TATGCCCGGTCTATAGGTTT+TGG | 0.300318 | 6_2:-68156089 | Msa0925240:CDS |
TGATCAGTTATTATGGCATT+TGG | 0.323265 | 6_2:+68155309 | None:intergenic |
TGGTGAATGCTTTCTGGAAT+TGG | 0.326923 | 6_2:+68154797 | None:intergenic |
CTCAAAGTCTTTCTCATTGA+AGG | 0.328946 | 6_2:+68154624 | None:intergenic |
AGGGCTGCATATGAATATTT+TGG | 0.330794 | 6_2:-68155516 | Msa0925240:CDS |
AAGTGCGGAGACTGCGACTT+GGG | 0.331491 | 6_2:-68155668 | Msa0925240:CDS |
CGCAGTGGAGGAAGGATATA+AGG | 0.337986 | 6_2:-68154489 | Msa0925240:CDS |
TTTGTGGCATATAATGAAAA+AGG | 0.344495 | 6_2:-68155226 | Msa0925240:CDS |
AGTATGAACTCATTCTTTGA+TGG | 0.348820 | 6_2:-68154964 | Msa0925240:CDS |
ATTGTCTTGATCAGTTATTA+TGG | 0.355900 | 6_2:+68155302 | None:intergenic |
AAGAGTTATGCCCGGTCTAT+AGG | 0.361091 | 6_2:-68156095 | Msa0925240:CDS |
ACTTATGAGTGAAGTATATC+AGG | 0.377433 | 6_2:-68153774 | Msa0925240:intron |
TCATGCTTGCTTTGATAGAT+TGG | 0.388712 | 6_2:-68154725 | Msa0925240:CDS |
ATCAAAACCACATTTAATAA+GGG | 0.391774 | 6_2:+68154456 | None:intergenic |
TTTGATGATTTCCACTTACT+TGG | 0.395938 | 6_2:+68154116 | None:intergenic |
CATCTTCTTCTATAATTTCA+GGG | 0.405722 | 6_2:+68154278 | None:intergenic |
CCTTTACTTCGAGTCGGTAC+AGG | 0.409568 | 6_2:+68154220 | None:intergenic |
AATTAAAGACATAGTGTTTG+AGG | 0.424296 | 6_2:-68154650 | Msa0925240:CDS |
AAAGTGATTTCATGGAAAAG+TGG | 0.450883 | 6_2:-68155122 | Msa0925240:CDS |
AAGTATTGAATTTGGATTGA+AGG | 0.452798 | 6_2:+68153793 | None:intergenic |
CTCGCCATCGATGGTGTTTG+TGG | 0.452930 | 6_2:-68155242 | Msa0925240:CDS |
ATTTGATGAAAGAAATCGTT+GGG | 0.454237 | 6_2:-68155046 | Msa0925240:CDS |
GAATATGACATTTGGTGAAA+AGG | 0.456326 | 6_2:-68155712 | Msa0925240:CDS |
CCATGGTCAATCTGTGTTGT+TGG | 0.460551 | 6_2:-68155415 | Msa0925240:CDS |
CATGGTCAATCTGTGTTGTT+GGG | 0.466450 | 6_2:-68155414 | Msa0925240:CDS |
ACTCCAACAAAAGGAGCAAA+TGG | 0.472118 | 6_2:+68155444 | None:intergenic |
TGTTGTTTGTTTCAATTCAA+AGG | 0.475247 | 6_2:-68154589 | Msa0925240:CDS |
TTTGGGCAGATGCGAGATGT+AGG | 0.483477 | 6_2:-68155536 | Msa0925240:CDS |
AAGGTCGTCCTCCTTCAAAA+AGG | 0.483624 | 6_2:-68154201 | Msa0925240:CDS |
AGTATTGAATTTGGATTGAA+GGG | 0.484124 | 6_2:+68153794 | None:intergenic |
TTGGCTGTTCACAACATGGT+TGG | 0.487761 | 6_2:-68155352 | Msa0925240:CDS |
CCTGAAATTATAGAAGAAGA+TGG | 0.488011 | 6_2:-68154277 | Msa0925240:CDS |
CTAAATATAGTTCCAACCTT+AGG | 0.488331 | 6_2:+68156146 | None:intergenic |
TATCCTCAAGTCATGAATCA+TGG | 0.488967 | 6_2:-68153661 | Msa0925240:CDS |
ATTGCTCTTAAGCATAATCA+TGG | 0.493801 | 6_2:-68155879 | Msa0925240:CDS |
CGGAGACTGCGACTTGGGGT+TGG | 0.494185 | 6_2:-68155663 | Msa0925240:CDS |
GTTCAAGTAGTTGATAAAGT+TGG | 0.495312 | 6_2:-68153982 | Msa0925240:CDS |
CTATAGTTGTTGAAGCGAAT+GGG | 0.503159 | 6_2:-68155740 | Msa0925240:CDS |
AAGTGATTTCATGGAAAAGT+GGG | 0.506412 | 6_2:-68155121 | Msa0925240:CDS |
TCTATAGTTGTTGAAGCGAA+TGG | 0.507984 | 6_2:-68155741 | Msa0925240:CDS |
CCACTGCGAGAAAATATAAG+AGG | 0.509446 | 6_2:+68154504 | None:intergenic |
AATGTGTCTCTCACATATGC+AGG | 0.509862 | 6_2:+68155021 | None:intergenic |
CATTCAATCTAGCCTTGCAC+TGG | 0.510411 | 6_2:+68155940 | None:intergenic |
AAACACTATGTCTTTAATTG+TGG | 0.512674 | 6_2:+68154654 | None:intergenic |
GCTTGCTTTGATAGATTGGA+AGG | 0.517556 | 6_2:-68154721 | Msa0925240:CDS |
TGGTGATTTACTCCAACAAA+AGG | 0.525957 | 6_2:+68155435 | None:intergenic |
TCAGGATAACGAATGGTTGA+AGG | 0.526171 | 6_2:-68155073 | Msa0925240:CDS |
TGGATCCTCGTTTGAAAAGG+AGG | 0.528466 | 6_2:-68155812 | Msa0925240:CDS |
GGGTATGAGAATATGACATT+TGG | 0.528947 | 6_2:-68155720 | Msa0925240:CDS |
AAAGATGAAATGCCTAAGGT+TGG | 0.530444 | 6_2:-68156158 | None:intergenic |
TTCCAAAAGCTCGCCATCGA+TGG | 0.531681 | 6_2:-68155251 | Msa0925240:CDS |
TTGGGCAGATGCGAGATGTA+GGG | 0.538615 | 6_2:-68155535 | Msa0925240:CDS |
TGAATAAACTTGCGAAGAAG+AGG | 0.539626 | 6_2:-68154153 | Msa0925240:CDS |
TGTTGTGAACAGCCAAGTAA+AGG | 0.547394 | 6_2:+68155359 | None:intergenic |
TAACTCCAAAACCTATAGAC+CGG | 0.548272 | 6_2:+68156084 | None:intergenic |
AGGATACTAAGACCTTTACT+TGG | 0.548532 | 6_2:-68155371 | Msa0925240:CDS |
CAGGATAACGAATGGTTGAA+GGG | 0.548682 | 6_2:-68155072 | Msa0925240:CDS |
CCTGTACCGACTCGAAGTAA+AGG | 0.550769 | 6_2:-68154220 | Msa0925240:CDS |
CTTTACTTCGAGTCGGTACA+GGG | 0.551509 | 6_2:+68154221 | None:intergenic |
AGGCATACCCTTATTAAATG+TGG | 0.553411 | 6_2:-68154463 | Msa0925240:CDS |
TTACTTGGCTGTTCACAACA+TGG | 0.555090 | 6_2:-68155356 | Msa0925240:CDS |
ATTCCAAGAATTTCAAGTGG+AGG | 0.555252 | 6_2:-68154767 | Msa0925240:CDS |
TTCAGGGCATGTTTCTTGAG+AGG | 0.556231 | 6_2:+68154294 | None:intergenic |
ATTGAAAGATAAAGTTGAGA+AGG | 0.561801 | 6_2:-68154887 | Msa0925240:CDS |
TTAGAACTCAATGATCAAGC+TGG | 0.567016 | 6_2:-68155789 | Msa0925240:CDS |
AAAGTGCGGAGACTGCGACT+TGG | 0.575984 | 6_2:-68155669 | Msa0925240:CDS |
ACATGGTTGGAATGCATGCA+TGG | 0.592737 | 6_2:-68155339 | Msa0925240:CDS |
TTGAACTTCAGGATAACGAA+TGG | 0.592982 | 6_2:-68155080 | Msa0925240:CDS |
TCATAAAGATGAAATGCCTA+AGG | 0.597014 | 6_2:-68156162 | None:intergenic |
ACACCATGATTCATGACTTG+AGG | 0.597741 | 6_2:+68153658 | None:intergenic |
CATTTGGTGAAAAGGACTGT+AGG | 0.603039 | 6_2:-68155704 | Msa0925240:CDS |
TATTTGATGAAAGAAATCGT+TGG | 0.605775 | 6_2:-68155047 | Msa0925240:CDS |
GAAATCATCAAAGTCAACAA+GGG | 0.614010 | 6_2:-68154105 | Msa0925240:CDS |
AACTCCAAAACCTATAGACC+GGG | 0.618933 | 6_2:+68156085 | None:intergenic |
CTGTTAGCTTAAGCACACAA+AGG | 0.625605 | 6_2:+68154548 | None:intergenic |
GGAAATCATCAAAGTCAACA+AGG | 0.625750 | 6_2:-68154106 | Msa0925240:CDS |
TGCGAGAAAATATAAGAGGA+CGG | 0.628214 | 6_2:+68154508 | None:intergenic |
AGTATTACAAGAGTTATGCC+CGG | 0.630025 | 6_2:-68156103 | Msa0925240:CDS |
AGTGCGGAGACTGCGACTTG+GGG | 0.633117 | 6_2:-68155667 | Msa0925240:CDS |
TAAAGTTGAGAAGGAAAACA+TGG | 0.634633 | 6_2:-68154878 | Msa0925240:CDS |
TATGCCACAAACACCATCGA+TGG | 0.638359 | 6_2:+68155238 | None:intergenic |
TTTACTCTAGCATGTAGTCG+TGG | 0.642195 | 6_2:-68156020 | Msa0925240:CDS |
AAAATTCCAAGAATTTCAAG+TGG | 0.644675 | 6_2:-68154770 | Msa0925240:CDS |
ACTTGGGGTTGGAGATGCTG+AGG | 0.644897 | 6_2:-68155652 | Msa0925240:CDS |
GGAGGAAGGATATAAGGCGA+AGG | 0.647816 | 6_2:-68154483 | Msa0925240:CDS |
AGGATAACGAATGGTTGAAG+GGG | 0.650586 | 6_2:-68155071 | Msa0925240:CDS |
CTTGCAATTTAGATGCACAC+AGG | 0.652836 | 6_2:+68154010 | None:intergenic |
AAATCATCAAAGTCAACAAG+GGG | 0.660765 | 6_2:-68154104 | Msa0925240:intron |
TTTGTTGGAGTAAATCACCA+TGG | 0.661689 | 6_2:-68155432 | Msa0925240:CDS |
TTTAGGAGGAATGAACATGG+TGG | 0.670141 | 6_2:-68153833 | Msa0925240:CDS |
CGTGTTGTTGATGATGACGA+TGG | 0.670761 | 6_2:+68153503 | None:intergenic |
ATGTGCTTTACTGTCAAGCG+AGG | 0.675011 | 6_2:-68155391 | Msa0925240:CDS |
CCAACAACACAGATTGACCA+TGG | 0.675112 | 6_2:+68155415 | None:intergenic |
GGACGACCTTTACTTCGAGT+CGG | 0.678639 | 6_2:+68154214 | None:intergenic |
GGAACTATATAGATAAAGTG+CGG | 0.685509 | 6_2:-68155683 | Msa0925240:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTAGAAGTAATAAGATTT+TGG | - | chr6_2:68153810-68153829 | Msa0925240:CDS | 15.0% |
!!! | TTTATTACATGTATGTTTTT+AGG | - | chr6_2:68155772-68155791 | Msa0925240:CDS | 15.0% |
!!! | TTATTACATGTATGTTTTTA+GGG | - | chr6_2:68155773-68155792 | Msa0925240:CDS | 15.0% |
!!! | TTCATATTTTGAATTATTAC+AGG | - | chr6_2:68156007-68156026 | Msa0925240:CDS | 15.0% |
!! | TTAATTAAAAGAAACATAAG+AGG | + | chr6_2:68156050-68156069 | None:intergenic | 15.0% |
!!! | TCGTTTAAGAAATGTATTTT+GGG | - | chr6_2:68154089-68154108 | Msa0925240:intron | 20.0% |
!!! | TGATTTTGGTTCATTTAATA+CGG | - | chr6_2:68154788-68154807 | Msa0925240:CDS | 20.0% |
!! | ATCAAAACCACATTTAATAA+GGG | + | chr6_2:68155189-68155208 | None:intergenic | 20.0% |
!! | TATCAAAACCACATTTAATA+AGG | + | chr6_2:68155190-68155209 | None:intergenic | 20.0% |
!!! | TGTGGTTTTGATAATTTAAT+TGG | - | chr6_2:68155197-68155216 | Msa0925240:CDS | 20.0% |
!!! | GTCTAATTTTCAATATTTGA+TGG | - | chr6_2:68155604-68155623 | Msa0925240:CDS | 20.0% |
!!! | TATTACATGTATGTTTTTAG+GGG | - | chr6_2:68155774-68155793 | Msa0925240:CDS | 20.0% |
!!! | TGTCATTTTTTTCTTTTTGA+AGG | - | chr6_2:68156096-68156115 | Msa0925240:CDS | 20.0% |
! | ACTAAACTTAGTAGCAAAAA+TGG | - | chr6_2:68153580-68153599 | Msa0925240:intron | 25.0% |
!!! | TAAAATAGCGTGTTTTGTTA+GGG | + | chr6_2:68153795-68153814 | None:intergenic | 25.0% |
!! | GTCGTTTAAGAAATGTATTT+TGG | - | chr6_2:68154088-68154107 | Msa0925240:intron | 25.0% |
! | ATTGTCTTGATCAGTTATTA+TGG | + | chr6_2:68154343-68154362 | None:intergenic | 25.0% |
! | TTTGTGGCATATAATGAAAA+AGG | - | chr6_2:68154416-68154435 | Msa0925240:CDS | 25.0% |
! | TTTGAGTAAAAGTGATTTCA+TGG | - | chr6_2:68154512-68154531 | Msa0925240:CDS | 25.0% |
! | TATTTGATGAAAGAAATCGT+TGG | - | chr6_2:68154595-68154614 | Msa0925240:CDS | 25.0% |
! | ATTTGATGAAAGAAATCGTT+GGG | - | chr6_2:68154596-68154615 | Msa0925240:CDS | 25.0% |
! | ATTGAAAGATAAAGTTGAGA+AGG | - | chr6_2:68154755-68154774 | Msa0925240:CDS | 25.0% |
!! | AAATTCTTGGAATTTTGCAT+TGG | + | chr6_2:68154868-68154887 | None:intergenic | 25.0% |
! | AAAATTCCAAGAATTTCAAG+TGG | - | chr6_2:68154872-68154891 | Msa0925240:CDS | 25.0% |
! | AAACACTATGTCTTTAATTG+TGG | + | chr6_2:68154991-68155010 | None:intergenic | 25.0% |
! | AATTAAAGACATAGTGTTTG+AGG | - | chr6_2:68154992-68155011 | Msa0925240:CDS | 25.0% |
!! | TGTTGTTTGTTTCAATTCAA+AGG | - | chr6_2:68155053-68155072 | Msa0925240:CDS | 25.0% |
! | CATCTTCTTCTATAATTTCA+GGG | + | chr6_2:68155367-68155386 | None:intergenic | 25.0% |
!!! | AATTTTCAATATTTGATGGC+AGG | - | chr6_2:68155608-68155627 | Msa0925240:CDS | 25.0% |
!!! | ATTACATGTATGTTTTTAGG+GGG | - | chr6_2:68155775-68155794 | Msa0925240:CDS | 25.0% |
!! | AGTATTGAATTTGGATTGAA+GGG | + | chr6_2:68155851-68155870 | None:intergenic | 25.0% |
!!! | AAGTATTGAATTTGGATTGA+AGG | + | chr6_2:68155852-68155871 | None:intergenic | 25.0% |
!!! | TCACTCATAAGTATTGAATT+TGG | + | chr6_2:68155860-68155879 | None:intergenic | 25.0% |
!! | AAGTATGTTTCCTGTTATTT+AGG | - | chr6_2:68155950-68155969 | Msa0925240:CDS | 25.0% |
! | TAAAATGGAACCTAAATAAC+AGG | + | chr6_2:68155963-68155982 | None:intergenic | 25.0% |
CTAAATATAGTTCCAACCTT+AGG | + | chr6_2:68153499-68153518 | None:intergenic | 30.0% | |
!! | TTGCACTGGATTTTTGTTAT+AGG | + | chr6_2:68153691-68153710 | None:intergenic | 30.0% |
TATAACAAAAATCCAGTGCA+AGG | - | chr6_2:68153690-68153709 | Msa0925240:intron | 30.0% | |
AATGCGTGTATTTCTTTAGA+AGG | - | chr6_2:68153721-68153740 | Msa0925240:intron | 30.0% | |
ATTGCTCTTAAGCATAATCA+TGG | - | chr6_2:68153763-68153782 | Msa0925240:intron | 30.0% | |
!! | CTAAAATAGCGTGTTTTGTT+AGG | + | chr6_2:68153796-68153815 | None:intergenic | 30.0% |
! | GAATATGACATTTGGTGAAA+AGG | - | chr6_2:68153930-68153949 | Msa0925240:intron | 30.0% |
GGAACTATATAGATAAAGTG+CGG | - | chr6_2:68153959-68153978 | Msa0925240:intron | 30.0% | |
TGATCAGTTATTATGGCATT+TGG | + | chr6_2:68154336-68154355 | None:intergenic | 30.0% | |
AAAGTGATTTCATGGAAAAG+TGG | - | chr6_2:68154520-68154539 | Msa0925240:CDS | 30.0% | |
AAGTGATTTCATGGAAAAGT+GGG | - | chr6_2:68154521-68154540 | Msa0925240:CDS | 30.0% | |
! | GATTGAAGATTTTGAACTTC+AGG | - | chr6_2:68154551-68154570 | Msa0925240:CDS | 30.0% |
! | ATATGTGAGAGACACATTTT+GGG | - | chr6_2:68154626-68154645 | Msa0925240:CDS | 30.0% |
AGTATGAACTCATTCTTTGA+TGG | - | chr6_2:68154678-68154697 | Msa0925240:CDS | 30.0% | |
TAAAGTTGAGAAGGAAAACA+TGG | - | chr6_2:68154764-68154783 | Msa0925240:CDS | 30.0% | |
!! | ATAGCTTGTGTAAGTCATTT+TGG | - | chr6_2:68154813-68154832 | Msa0925240:CDS | 30.0% |
CCATCTTCTTCTATAATTTC+AGG | + | chr6_2:68155368-68155387 | None:intergenic | 30.0% | |
CCTGAAATTATAGAAGAAGA+TGG | - | chr6_2:68155365-68155384 | Msa0925240:CDS | 30.0% | |
!!! | ACTTACTTGGCTTCTTTTTT+TGG | + | chr6_2:68155516-68155535 | None:intergenic | 30.0% |
AAAAAAAGAAGCCAAGTAAG+TGG | - | chr6_2:68155515-68155534 | Msa0925240:CDS | 30.0% | |
! | TTTGATGATTTCCACTTACT+TGG | + | chr6_2:68155529-68155548 | None:intergenic | 30.0% |
GAAATCATCAAAGTCAACAA+GGG | - | chr6_2:68155537-68155556 | Msa0925240:CDS | 30.0% | |
AAATCATCAAAGTCAACAAG+GGG | - | chr6_2:68155538-68155557 | Msa0925240:CDS | 30.0% | |
!! | GTTCAAGTAGTTGATAAAGT+TGG | - | chr6_2:68155660-68155679 | Msa0925240:CDS | 30.0% |
!!! | TTACATGTATGTTTTTAGGG+GGG | - | chr6_2:68155776-68155795 | Msa0925240:CDS | 30.0% |
ACTTATGAGTGAAGTATATC+AGG | - | chr6_2:68155868-68155887 | Msa0925240:CDS | 30.0% | |
TTCCTGGAACATTATTATTG+TGG | - | chr6_2:68155919-68155938 | Msa0925240:CDS | 30.0% | |
ATCCACAATAATAATGTTCC+AGG | + | chr6_2:68155924-68155943 | None:intergenic | 30.0% | |
ATAACAGGAAACATACTTGT+TGG | + | chr6_2:68155948-68155967 | None:intergenic | 30.0% | |
TTCATGACTTGAGGATAAAA+TGG | + | chr6_2:68155978-68155997 | None:intergenic | 30.0% | |
AGTATTACAAGAGTTATGCC+CGG | - | chr6_2:68153539-68153558 | Msa0925240:intron | 35.0% | |
TAACTCCAAAACCTATAGAC+CGG | + | chr6_2:68153561-68153580 | None:intergenic | 35.0% | |
AGTAGCAAAAATGGAGATGA+TGG | - | chr6_2:68153589-68153608 | Msa0925240:intron | 35.0% | |
! | TTTTGGATCCTCGTTTGAAA+AGG | - | chr6_2:68153827-68153846 | Msa0925240:CDS | 35.0% |
TTAGAACTCAATGATCAAGC+TGG | - | chr6_2:68153853-68153872 | Msa0925240:intron | 35.0% | |
TCTATAGTTGTTGAAGCGAA+TGG | - | chr6_2:68153901-68153920 | Msa0925240:intron | 35.0% | |
CTATAGTTGTTGAAGCGAAT+GGG | - | chr6_2:68153902-68153921 | Msa0925240:intron | 35.0% | |
GGGTATGAGAATATGACATT+TGG | - | chr6_2:68153922-68153941 | Msa0925240:intron | 35.0% | |
! | AGGGCTGCATATGAATATTT+TGG | - | chr6_2:68154126-68154145 | Msa0925240:CDS | 35.0% |
TGGTGATTTACTCCAACAAA+AGG | + | chr6_2:68154210-68154229 | None:intergenic | 35.0% | |
TTTGTTGGAGTAAATCACCA+TGG | - | chr6_2:68154210-68154229 | Msa0925240:CDS | 35.0% | |
AGGATACTAAGACCTTTACT+TGG | - | chr6_2:68154271-68154290 | Msa0925240:CDS | 35.0% | |
TGCCATGAAAAATGCAATTG+CGG | - | chr6_2:68154362-68154381 | Msa0925240:CDS | 35.0% | |
! | ATCCGCAATTGCATTTTTCA+TGG | + | chr6_2:68154367-68154386 | None:intergenic | 35.0% |
AAAAAGGTTCCAGAAAAGCT+AGG | - | chr6_2:68154432-68154451 | Msa0925240:CDS | 35.0% | |
TTGAACTTCAGGATAACGAA+TGG | - | chr6_2:68154562-68154581 | Msa0925240:CDS | 35.0% | |
! | CATATGTGAGAGACACATTT+TGG | - | chr6_2:68154625-68154644 | Msa0925240:CDS | 35.0% |
!! | AAGGAAAACATGGCTGATTT+TGG | - | chr6_2:68154774-68154793 | Msa0925240:CDS | 35.0% |
! | ATTCCAAGAATTTCAAGTGG+AGG | - | chr6_2:68154875-68154894 | Msa0925240:CDS | 35.0% |
TCATGCTTGCTTTGATAGAT+TGG | - | chr6_2:68154917-68154936 | Msa0925240:CDS | 35.0% | |
CTCAAAGTCTTTCTCATTGA+AGG | + | chr6_2:68155021-68155040 | None:intergenic | 35.0% | |
TGCGAGAAAATATAAGAGGA+CGG | + | chr6_2:68155137-68155156 | None:intergenic | 35.0% | |
AGGCATACCCTTATTAAATG+TGG | - | chr6_2:68155179-68155198 | Msa0925240:CDS | 35.0% | |
! | CTTTTACGAAGTTGCTTCTA+CGG | - | chr6_2:68155259-68155278 | Msa0925240:CDS | 35.0% |
! | TTTGAGGACTTCCTTTTTGA+AGG | + | chr6_2:68155455-68155474 | None:intergenic | 35.0% |
! | CACAATTTGAGCAACTTTTG+AGG | + | chr6_2:68155471-68155490 | None:intergenic | 35.0% |
TGAATAAACTTGCGAAGAAG+AGG | - | chr6_2:68155489-68155508 | Msa0925240:CDS | 35.0% | |
GGAAATCATCAAAGTCAACA+AGG | - | chr6_2:68155536-68155555 | Msa0925240:CDS | 35.0% | |
!!! | AGTTTTAGGAGGAATGAACA+TGG | - | chr6_2:68155806-68155825 | Msa0925240:CDS | 35.0% |
TATCCTCAAGTCATGAATCA+TGG | - | chr6_2:68155981-68156000 | Msa0925240:CDS | 35.0% | |
AACTCCAAAACCTATAGACC+GGG | + | chr6_2:68153560-68153579 | None:intergenic | 40.0% | |
TTTACTCTAGCATGTAGTCG+TGG | - | chr6_2:68153622-68153641 | Msa0925240:intron | 40.0% | |
! | TCTAACCTCCTTTTCAAACG+AGG | + | chr6_2:68153838-68153857 | None:intergenic | 40.0% |
! | CATTTGGTGAAAAGGACTGT+AGG | - | chr6_2:68153938-68153957 | Msa0925240:intron | 40.0% |
!! | ATGCCATTTGCTCCTTTTGT+TGG | - | chr6_2:68154195-68154214 | Msa0925240:CDS | 40.0% |
ACTCCAACAAAAGGAGCAAA+TGG | + | chr6_2:68154201-68154220 | None:intergenic | 40.0% | |
! | CATGGTCAATCTGTGTTGTT+GGG | - | chr6_2:68154228-68154247 | Msa0925240:CDS | 40.0% |
TGTTGTGAACAGCCAAGTAA+AGG | + | chr6_2:68154286-68154305 | None:intergenic | 40.0% | |
TTACTTGGCTGTTCACAACA+TGG | - | chr6_2:68154286-68154305 | Msa0925240:CDS | 40.0% | |
TCAGGATAACGAATGGTTGA+AGG | - | chr6_2:68154569-68154588 | Msa0925240:CDS | 40.0% | |
CAGGATAACGAATGGTTGAA+GGG | - | chr6_2:68154570-68154589 | Msa0925240:CDS | 40.0% | |
AGGATAACGAATGGTTGAAG+GGG | - | chr6_2:68154571-68154590 | Msa0925240:CDS | 40.0% | |
AATGTGTCTCTCACATATGC+AGG | + | chr6_2:68154624-68154643 | None:intergenic | 40.0% | |
!! | TGGTGAATGCTTTCTGGAAT+TGG | + | chr6_2:68154848-68154867 | None:intergenic | 40.0% |
! | TTGCATTGGTGAATGCTTTC+TGG | + | chr6_2:68154854-68154873 | None:intergenic | 40.0% |
CAACCTCCACTTGAAATTCT+TGG | + | chr6_2:68154881-68154900 | None:intergenic | 40.0% | |
GCTTGCTTTGATAGATTGGA+AGG | - | chr6_2:68154921-68154940 | Msa0925240:CDS | 40.0% | |
! | CTGTTAGCTTAAGCACACAA+AGG | + | chr6_2:68155097-68155116 | None:intergenic | 40.0% |
CTTTGTGTGCTTAAGCTAAC+AGG | - | chr6_2:68155095-68155114 | Msa0925240:CDS | 40.0% | |
CCACTGCGAGAAAATATAAG+AGG | + | chr6_2:68155141-68155160 | None:intergenic | 40.0% | |
! | CCTCTTATATTTTCTCGCAG+TGG | - | chr6_2:68155138-68155157 | Msa0925240:CDS | 40.0% |
! | CTTATATTTTCTCGCAGTGG+AGG | - | chr6_2:68155141-68155160 | Msa0925240:CDS | 40.0% |
CGTAGAAGCAACTTCGTAAA+AGG | + | chr6_2:68155261-68155280 | None:intergenic | 40.0% | |
CTTGCAATTTAGATGCACAC+AGG | + | chr6_2:68155635-68155654 | None:intergenic | 40.0% | |
TTTAGGAGGAATGAACATGG+TGG | - | chr6_2:68155809-68155828 | Msa0925240:CDS | 40.0% | |
ACACCATGATTCATGACTTG+AGG | + | chr6_2:68155987-68156006 | None:intergenic | 40.0% | |
AAGAGTTATGCCCGGTCTAT+AGG | - | chr6_2:68153547-68153566 | Msa0925240:intron | 45.0% | |
! | TATGCCCGGTCTATAGGTTT+TGG | - | chr6_2:68153553-68153572 | Msa0925240:intron | 45.0% |
!! | CATTCAATCTAGCCTTGCAC+TGG | + | chr6_2:68153705-68153724 | None:intergenic | 45.0% |
TGGATCCTCGTTTGAAAAGG+AGG | - | chr6_2:68153830-68153849 | Msa0925240:CDS | 45.0% | |
CCAACAACACAGATTGACCA+TGG | + | chr6_2:68154230-68154249 | None:intergenic | 45.0% | |
CCATGGTCAATCTGTGTTGT+TGG | - | chr6_2:68154227-68154246 | Msa0925240:CDS | 45.0% | |
ATGTGCTTTACTGTCAAGCG+AGG | - | chr6_2:68154251-68154270 | Msa0925240:CDS | 45.0% | |
TTGGCTGTTCACAACATGGT+TGG | - | chr6_2:68154290-68154309 | Msa0925240:CDS | 45.0% | |
ACATGGTTGGAATGCATGCA+TGG | - | chr6_2:68154303-68154322 | Msa0925240:CDS | 45.0% | |
TATGCCACAAACACCATCGA+TGG | + | chr6_2:68154407-68154426 | None:intergenic | 45.0% | |
!! | GAGTGTCTACCTAGCTTTTC+TGG | + | chr6_2:68154444-68154463 | None:intergenic | 45.0% |
! | TGTGAGAGACACATTTTGGG+CGG | - | chr6_2:68154629-68154648 | Msa0925240:CDS | 45.0% |
! | TATTTTCTCGCAGTGGAGGA+AGG | - | chr6_2:68155145-68155164 | Msa0925240:CDS | 45.0% |
TTCAGGGCATGTTTCTTGAG+AGG | + | chr6_2:68155351-68155370 | None:intergenic | 45.0% | |
CTTTACTTCGAGTCGGTACA+GGG | + | chr6_2:68155424-68155443 | None:intergenic | 45.0% | |
AAGGTCGTCCTCCTTCAAAA+AGG | - | chr6_2:68155441-68155460 | Msa0925240:CDS | 45.0% | |
!! | GAGGACTTCCTTTTTGAAGG+AGG | + | chr6_2:68155452-68155471 | None:intergenic | 45.0% |
!!! | AGGGGGGACACATTAGTTTT+AGG | - | chr6_2:68155792-68155811 | Msa0925240:CDS | 45.0% |
!!! | GGGGACACATTAGTTTTAGG+AGG | - | chr6_2:68155795-68155814 | Msa0925240:CDS | 45.0% |
! | TCCAGTGCTCTTTAGTTTCC+TGG | - | chr6_2:68155903-68155922 | Msa0925240:CDS | 45.0% |
! | TCCAGGAAACTAAAGAGCAC+TGG | + | chr6_2:68155907-68155926 | None:intergenic | 45.0% |
!! | CGTGTTGTTGATGATGACGA+TGG | + | chr6_2:68156142-68156161 | None:intergenic | 45.0% |
TTTGGGCAGATGCGAGATGT+AGG | - | chr6_2:68154106-68154125 | Msa0925240:CDS | 50.0% | |
TTGGGCAGATGCGAGATGTA+GGG | - | chr6_2:68154107-68154126 | Msa0925240:CDS | 50.0% | |
TTCCAAAAGCTCGCCATCGA+TGG | - | chr6_2:68154391-68154410 | Msa0925240:CDS | 50.0% | |
! | GTGAGAGACACATTTTGGGC+GGG | - | chr6_2:68154630-68154649 | Msa0925240:CDS | 50.0% |
CGCAGTGGAGGAAGGATATA+AGG | - | chr6_2:68155153-68155172 | Msa0925240:CDS | 50.0% | |
GGAGGAAGGATATAAGGCGA+AGG | - | chr6_2:68155159-68155178 | Msa0925240:CDS | 50.0% | |
CCTTTACTTCGAGTCGGTAC+AGG | + | chr6_2:68155425-68155444 | None:intergenic | 50.0% | |
!! | CCTGTACCGACTCGAAGTAA+AGG | - | chr6_2:68155422-68155441 | Msa0925240:CDS | 50.0% |
GGACGACCTTTACTTCGAGT+CGG | + | chr6_2:68155431-68155450 | None:intergenic | 50.0% | |
AAAGTGCGGAGACTGCGACT+TGG | - | chr6_2:68153973-68153992 | Msa0925240:CDS | 55.0% | |
AAGTGCGGAGACTGCGACTT+GGG | - | chr6_2:68153974-68153993 | Msa0925240:CDS | 55.0% | |
ACTTGGGGTTGGAGATGCTG+AGG | - | chr6_2:68153990-68154009 | Msa0925240:CDS | 55.0% | |
! | CACCATCGATGGCGAGCTTT+TGG | + | chr6_2:68154396-68154415 | None:intergenic | 55.0% |
CTCGCCATCGATGGTGTTTG+TGG | - | chr6_2:68154400-68154419 | Msa0925240:CDS | 55.0% | |
AGTGCGGAGACTGCGACTTG+GGG | - | chr6_2:68153975-68153994 | Msa0925240:CDS | 60.0% | |
! | CGGAGACTGCGACTTGGGGT+TGG | - | chr6_2:68153979-68153998 | Msa0925240:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6_2 | gene | 68153493 | 68156171 | 68153493 | ID=Msa0925240;Name=Msa0925240 |
chr6_2 | mRNA | 68153493 | 68156171 | 68153493 | ID=Msa0925240-mRNA-1;Parent=Msa0925240;Name=Msa0925240-mRNA-1;_AED=0.25;_eAED=0.31;_QI=0|0.25|0|1|0.75|0.8|5|0|781 |
chr6_2 | exon | 68154105 | 68156171 | 68154105 | ID=Msa0925240-mRNA-1:exon:10838;Parent=Msa0925240-mRNA-1 |
chr6_2 | exon | 68153963 | 68154034 | 68153963 | ID=Msa0925240-mRNA-1:exon:10837;Parent=Msa0925240-mRNA-1 |
chr6_2 | exon | 68153775 | 68153870 | 68153775 | ID=Msa0925240-mRNA-1:exon:10836;Parent=Msa0925240-mRNA-1 |
chr6_2 | exon | 68153636 | 68153692 | 68153636 | ID=Msa0925240-mRNA-1:exon:10835;Parent=Msa0925240-mRNA-1 |
chr6_2 | exon | 68153493 | 68153546 | 68153493 | ID=Msa0925240-mRNA-1:exon:10834;Parent=Msa0925240-mRNA-1 |
chr6_2 | CDS | 68154105 | 68156171 | 68154105 | ID=Msa0925240-mRNA-1:cds;Parent=Msa0925240-mRNA-1 |
chr6_2 | CDS | 68153963 | 68154034 | 68153963 | ID=Msa0925240-mRNA-1:cds;Parent=Msa0925240-mRNA-1 |
chr6_2 | CDS | 68153775 | 68153870 | 68153775 | ID=Msa0925240-mRNA-1:cds;Parent=Msa0925240-mRNA-1 |
chr6_2 | CDS | 68153636 | 68153692 | 68153636 | ID=Msa0925240-mRNA-1:cds;Parent=Msa0925240-mRNA-1 |
chr6_2 | CDS | 68153493 | 68153546 | 68153493 | ID=Msa0925240-mRNA-1:cds;Parent=Msa0925240-mRNA-1 |
Gene Sequence |
Protein sequence |