AlfalfaGEDB | Msa0925480

M. sativa cultivar zhongmu-4 / Msa0925480

KEGG: K04730
GO: GO:0000003 GO:0000902 GO:0000904 GO:0001558 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010769 GO:0016020 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016324 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022603 GO:0022604 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0036211 GO:0040007 GO:0040008 GO:0042995 GO:0043170 GO:0043412 GO:0043900 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044425 GO:0044459 GO:0044464 GO:0044706 GO:0045177 GO:0045595 GO:0048468 GO:0048588 GO:0048589 GO:0048638 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051239 GO:0051510 GO:0051704 GO:0060284 GO:0060560 GO:0065007 GO:0071704 GO:0071840 GO:0071944 GO:0080092 GO:0090406 GO:0098590 GO:0120025 GO:0140096 GO:1901564 GO:2000241
PFAM: PF08263.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0925480	XP_013453251.1	96.338	628	23	0	1	628	1	628	0.0	1249

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0925480	sp\|C0LGU0\|PRK1_ARATH	48.527	645	288	12	1	624	15	636	0.0	602

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0925480	MtrunA17_Chr6g0488771	96.145	415	16	0	214	628	5	419	0.0	821
Msa0925480	MtrunA17_Chr8g0388991	63.592	618	213	5	6	621	14	621	0.0	783
Msa0925480	MtrunA17_Chr2g0334251	49.117	623	293	11	17	618	34	653	0.0	568
Msa0925480	MtrunA17_Chr1g0147701	44.774	641	307	10	5	624	8	622	4.89e-179	523
Msa0925480	MtrunA17_Chr8g0379571	45.283	636	299	14	9	621	51	660	5.90e-177	518
Msa0925480	MtrunA17_Chr4g0070291	40.781	640	333	14	5	617	6	626	3.50e-154	458
Msa0925480	MtrunA17_Chr6g0488781	96.279	215	8	0	1	215	10	224	9.97e-150	431
Msa0925480	MtrunA17_Chr8g0344471	38.589	666	327	13	18	619	26	673	1.21e-138	421
Msa0925480	MtrunA17_Chr8g0393211	35.188	611	346	16	45	620	54	649	5.80e-105	332
Msa0925480	MtrunA17_Chr3g0128551	34.622	621	344	15	23	617	31	615	6.25e-105	331

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0925480	AT5G35390.1	48.527	645	288	12	1	624	15	636	0.0	602
Msa0925480	AT2G07040.1	47.235	633	292	12	8	624	14	620	0.0	584
Msa0925480	AT4G31250.1	44.635	643	323	12	3	619	8	643	0.0	563
Msa0925480	AT3G20190.1	45.859	652	309	9	6	628	22	658	0.0	550
Msa0925480	AT1G50610.1	46.276	631	296	11	23	627	46	659	1.69e-173	509
Msa0925480	AT3G42880.1	36.234	632	373	11	5	616	10	631	2.48e-135	410
Msa0925480	AT5G20690.1	36.081	643	352	11	22	617	28	658	2.76e-132	403
Msa0925480	AT3G20190.2	48.276	377	178	5	255	628	107	469	4.34e-117	358
Msa0925480	AT2G26730.1	36.721	610	327	16	45	624	47	627	1.25e-106	336
Msa0925480	AT5G05160.1	34.351	655	362	18	1	625	9	625	2.82e-102	324

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Find 142 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAAATGAACAATGTTAAT+AGG	0.337937	6_2:-68602856	Msa0925480:CDS
AACCGCAACGATATCAACCT+CGG	0.658575	6_2:+68603906	None:intergenic
AAGAAAGTGATGAAGAATGG+TGG	0.692073	6_2:+68604389	None:intergenic
AAGAAGAAAGTGATGAAGAA+TGG	0.487410	6_2:+68604386	None:intergenic
AAGACTGATGTGTGGAGTCT+TGG	0.523797	6_2:-68602245	Msa0925480:CDS
AAGCGTTTCAAGGGATGCAG+TGG	0.613015	6_2:-68603995	Msa0925480:CDS
AAGCTAATCGTTCTGATATA+CGG	0.365012	6_2:+68604122	None:intergenic
AAGCTGTGTGGAGTCCCTTT+AGG	0.375098	6_2:-68603319	Msa0925480:CDS
AAGGTAAATGTTCTTGAGAC+CGG	0.531549	6_2:+68604052	None:intergenic
AATAAATTTGAGCCGTATTG+TGG	0.497798	6_2:-68603269	Msa0925480:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAAGAAAGTGATGAAGAA+TGG	+	chr6_2:68601950-68601969	None:intergenic	30.0%
TTTGCATTATCACCATTACA+TGG	+	chr6_2:68602091-68602110	None:intergenic	30.0%
TGTTACAAAGGAAATGTTTG+GGG	-	chr6_2:68602127-68602146	Msa0925480:CDS	30.0%
GATATACGGTAAATCTTTGA+TGG	+	chr6_2:68602200-68602219	None:intergenic	30.0%
AAGCTAATCGTTCTGATATA+CGG	+	chr6_2:68602214-68602233	None:intergenic	30.0%
TTGGATGGAAATAAATTCAC+CGG	-	chr6_2:68602448-68602467	Msa0925480:CDS	30.0%
GTTTCTCTAAATTCAGGAAT+AGG	+	chr6_2:68602475-68602494	None:intergenic	30.0%
TTAAGCGTTTCTCTAAATTC+AGG	+	chr6_2:68602481-68602500	None:intergenic	30.0%
GTAGCGAATAATCAATTAGA+GGG	-	chr6_2:68602511-68602530	Msa0925480:CDS	30.0%
TAAAAATGGCTTACACATGA+GGG	+	chr6_2:68602741-68602760	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_2	gene	68601938	68604417	68601938	ID=Msa0925480;Name=Msa0925480
chr6_2	mRNA	68601938	68604417	68601938	ID=Msa0925480-mRNA-1;Parent=Msa0925480;Name=Msa0925480-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0\|0\|0\|1\|1\|1\|3\|0\|628
chr6_2	exon	68603775	68604417	68603775	ID=Msa0925480-mRNA-1:exon:10976;Parent=Msa0925480-mRNA-1
chr6_2	exon	68602711	68603349	68602711	ID=Msa0925480-mRNA-1:exon:10975;Parent=Msa0925480-mRNA-1
chr6_2	exon	68601938	68602542	68601938	ID=Msa0925480-mRNA-1:exon:10974;Parent=Msa0925480-mRNA-1
chr6_2	CDS	68603775	68604417	68603775	ID=Msa0925480-mRNA-1:cds;Parent=Msa0925480-mRNA-1
chr6_2	CDS	68602711	68603349	68602711	ID=Msa0925480-mRNA-1:cds;Parent=Msa0925480-mRNA-1
chr6_2	CDS	68601938	68602542	68601938	ID=Msa0925480-mRNA-1:cds;Parent=Msa0925480-mRNA-1

Gene Sequence

>Msa0925480

ATGGCACCACCATTCTTCATCACTTTCTTCTTTTCTATTAATCTCATTAACATTGCTTATTGTATTTCAGACATAGATTCTCTTCTCAAATTTAAAAACTCTCTTCAAAACACCGACGTTACATTATCTTCATGGAACACATCCATGCCTCCATGTAATGGTGATAATGCAAATTGGGCGGGCGTTCTTTGTTACAAAGGAAATGTTTGGGGATTCAAACTCGAAAACATGAACCTTAAAGGTAACATTGACGTCGATTCCATCAAAGATTTACCGTATATCAGAACGATTAGCTTAATGAACAACCAATTCGATACCACGTGGCCAAACCTAAACAAACTCACCGGTCTCAAGAACATTTACCTTTCTAATAATAAATTCTCTGGCGAGATTCCAGCAGAAGCGTTTCAAGGGATGCAGTGGCTGAAGAAAATTTATCTCGACAATAATCAGTTCACTGGTCCTATTCCAACTTCCCTTGCTTCATTGCCGAGGTTGATATCGTTGCGGTTGGATGGAAATAAATTCACCGGTCCTATTCCTGAATTTAGAGAAACGCTTAAATCATTCAGCGTAGCGAATAATCAATTAGAGGGTGAAATACCTGCCAACCTTAGCAAGATTCCAGCTTCATCTTTTTCTGGTAATGAAAAGCTGTGTGGAGTCCCTTTAGGAGCATGTTCGTCGAATAAGAAATCACCAATAAATTTGAGCCGTATTGTGGTCGTGGTTCTTGTTAGTCTTGCACTTCTTGTGATTGCAGCAGTAATAGTATATGTCCTTATGAAAAGAAGAAAAACTAAACAACAAGAAGAATTAGGAGAAGGAGCTGGTGTAGGTGCAAACACGAGCGGCAGGGATAATAATAATCAAAAGAAAGGATCATCATCAAATAATAATACAGACGATGGTTCAGTAAGATCACGTGGAAGCAGTAATACCAGTAGCAGAAAAGGAGATAGCAAGTTGTCCTTTGTGAGGGAAGAAGTATCTGCAGAATTTGATTTGCAAGATCTTTTGAGAGCCGCTGCTGAGATATTAGGAAGTGGTTGTCACAGTTCATCCTACAAGGCTGCTCTGTTGACTGGCCCTACTGTTGTCGTCAAAAGATACAAACAAATGAACAATGTTAATAGGCCAGAGTTTCAAGAGCACATGAGAAGACTAGGAAGGTTGAATCATCCGAATCTCCTTCCTCTCGTAGCTTACTACTACAAAAGAGACGAGAAACTTTTTATCACCGACTATGTTCCCAATGGCAGTTTGGCCGTTCGCCTTCACGGATACCATTCTATAGGACAGGAAAGCCTTGATTGGCCAAGCAGATTGAAGATAGTGAAAGGCATAGCGAAAGGGATTGAATATCTATACAAGGAGATGCCGAACTTGATTGCGCCTCATGGTCATCTTAAATCGTCAAATGTTCTATTGAGTGAGTCATTGGAGCCTATACTAACCGACTACGGATTAGTACCTGTGATAAACCAGGATGTTGCTCACGAAATAATGGTTATATACGCGTCACCTGAGTATTTGCAGCATGGGCGGATCACAAAGAAGACTGATGTGTGGAGTCTTGGTATACTCATTTTGGAAATTCTAACCGGAAAACTTCCTGCTAATTTCCTACAACAAAGTGGTAAAGGGAGTGAGTTGAGTTTAGCGAATTGGGTGGATTCTGTTGTGCCGGAAGAGTGGAGCAGCGAGGTTTTTGATAAAGATATGGAGTTAACAAGTAATAATGAGGGGGAGATGGTTAAGCTTTTGAAGATTGCATTGGCATGTTGTGATATGGATATTGATAAGAGATTGGATTTGAAAGAAGCTGCTGAAAGAATTCAAGAGATACAAGAGAATAATCATGAGGATGATTTGAATTCTTCTTAG

Protein sequence

>Msa0925480

MAPPFFITFFFSINLINIAYCISDIDSLLKFKNSLQNTDVTLSSWNTSMPPCNGDNANWAGVLCYKGNVWGFKLENMNLKGNIDVDSIKDLPYIRTISLMNNQFDTTWPNLNKLTGLKNIYLSNNKFSGEIPAEAFQGMQWLKKIYLDNNQFTGPIPTSLASLPRLISLRLDGNKFTGPIPEFRETLKSFSVANNQLEGEIPANLSKIPASSFSGNEKLCGVPLGACSSNKKSPINLSRIVVVVLVSLALLVIAAVIVYVLMKRRKTKQQEELGEGAGVGANTSGRDNNNQKKGSSSNNNTDDGSVRSRGSSNTSSRKGDSKLSFVREEVSAEFDLQDLLRAAAEILGSGCHSSSYKAALLTGPTVVVKRYKQMNNVNRPEFQEHMRRLGRLNHPNLLPLVAYYYKRDEKLFITDYVPNGSLAVRLHGYHSIGQESLDWPSRLKIVKGIAKGIEYLYKEMPNLIAPHGHLKSSNVLLSESLEPILTDYGLVPVINQDVAHEIMVIYASPEYLQHGRITKKTDVWSLGILILEILTGKLPANFLQQSGKGSELSLANWVDSVVPEEWSSEVFDKDMELTSNNEGEMVKLLKIALACCDMDIDKRLDLKEAAERIQEIQENNHEDDLNSS*