Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0925680 | XP_003620925.1 | 89.759 | 166 | 17 | 0 | 2 | 167 | 138 | 303 | 7.44e-103 | 310 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0925680 | sp|F4K933|ET2_ARATH | 40.000 | 155 | 89 | 2 | 2 | 152 | 153 | 307 | 1.98e-26 | 107 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|---|---|
Msa0925680 | TF | HRT |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0925680 | MtrunA17_Chr6g0488451 | 89.759 | 166 | 17 | 0 | 2 | 167 | 138 | 303 | 6.84e-107 | 310 |
Msa0925680 | MtrunA17_Chr7g0256351 | 70.186 | 161 | 47 | 1 | 2 | 161 | 142 | 302 | 7.97e-74 | 226 |
Msa0925680 | MtrunA17_Chr6g0488421 | 37.864 | 103 | 49 | 2 | 2 | 90 | 39 | 140 | 3.14e-14 | 69.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0925680 | AT5G56780.1 | 40.000 | 155 | 89 | 2 | 2 | 152 | 153 | 307 | 2.01e-27 | 107 |
Find 28 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGCAACATACTTGATTTAAT+TGG | 0.224850 | 6_2:-68964646 | None:intergenic |
TAAAATTTGTGGAGTGAATT+TGG | 0.231337 | 6_2:+68964798 | Msa0925680:CDS |
GTTGTATCTTGAACTATCTT+AGG | 0.344160 | 6_2:-68964751 | None:intergenic |
AGTGAAGGGTAGAAGTGATT+TGG | 0.349328 | 6_2:-68964605 | None:intergenic |
TCGGATTTGTTATCTTTCAT+AGG | 0.354876 | 6_2:-68964667 | None:intergenic |
GGAATTTGAACACGCGAGAT+AGG | 0.386624 | 6_2:-68964717 | None:intergenic |
TGTTTGCAAGGCATCTCCCT+TGG | 0.436980 | 6_2:-68964455 | None:intergenic |
GAGAAGAGTGGTAAAATTTG+TGG | 0.450994 | 6_2:+68964787 | Msa0925680:CDS |
GCTGCCATTGTCTGCTTCAT+CGG | 0.453379 | 6_2:-68964686 | None:intergenic |
ATCTGAAAATGTTCTTGTGC+TGG | 0.457395 | 6_2:-68964578 | None:intergenic |
GTTAGGTGTCATGAACATAA+AGG | 0.469142 | 6_2:+68964862 | Msa0925680:CDS |
TGAGTACATTTGATTATGCT+TGG | 0.471865 | 6_2:+68964491 | Msa0925680:CDS |
GCTTGGAACACAATTAATAA+CGG | 0.491690 | 6_2:+68964508 | Msa0925680:CDS |
CAGTTGAAATTCTGTTTGCA+AGG | 0.502089 | 6_2:-68964467 | None:intergenic |
CCTTCACTCAAAAGAAAGTA+GGG | 0.503569 | 6_2:+68964620 | Msa0925680:CDS |
CCCTTCACTCAAAAGAAAGT+AGG | 0.510670 | 6_2:+68964619 | Msa0925680:CDS |
GAGCATTTCAAGAATATCAC+CGG | 0.525607 | 6_2:-68964542 | None:intergenic |
CTATCTTAGGACGCGACCGG+TGG | 0.570672 | 6_2:-68964738 | None:intergenic |
AATAACGGTCCACGGCGTCC+CGG | 0.572061 | 6_2:+68964523 | Msa0925680:CDS |
CTCGCGTGTTCAAATTCCAC+CGG | 0.598427 | 6_2:+68964722 | Msa0925680:CDS |
GAACTATCTTAGGACGCGAC+CGG | 0.598468 | 6_2:-68964741 | None:intergenic |
TTCTATTTGTACAAAGACGC+CGG | 0.623541 | 6_2:+68964828 | Msa0925680:CDS |
AGAATATCACCGGGACGCCG+TGG | 0.625598 | 6_2:-68964532 | None:intergenic |
GTTGAACAGATGCAAACCAA+GGG | 0.638402 | 6_2:+68964439 | Msa0925680:intron |
ACACAATTAATAACGGTCCA+CGG | 0.642408 | 6_2:+68964515 | Msa0925680:CDS |
TGTTGAACAGATGCAAACCA+AGG | 0.647561 | 6_2:+68964438 | Msa0925680:intron |
AGCATTTCAAGAATATCACC+GGG | 0.651967 | 6_2:-68964541 | None:intergenic |
AAATCCGATGAAGCAGACAA+TGG | 0.675612 | 6_2:+68964682 | Msa0925680:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATATTAGAAGCTTTAATAAT+TGG | + | chr6_2:68963661-68963680 | Msa0925680:intron | 15.0% |
!! | AATCTAATAGAATAAACAAT+TGG | + | chr6_2:68963840-68963859 | Msa0925680:intron | 15.0% |
!!! | GCATTTATATTTAATCTTTT+GGG | - | chr6_2:68964356-68964375 | None:intergenic | 15.0% |
!!! | TGCATTTATATTTAATCTTT+TGG | - | chr6_2:68964357-68964376 | None:intergenic | 15.0% |
!!! | ATATTAGAAGCTTTAATAAT+TGG | + | chr6_2:68963661-68963680 | Msa0925680:intron | 15.0% |
!! | AATCTAATAGAATAAACAAT+TGG | + | chr6_2:68963840-68963859 | Msa0925680:intron | 15.0% |
!!! | GCATTTATATTTAATCTTTT+GGG | - | chr6_2:68964356-68964375 | None:intergenic | 15.0% |
!!! | TGCATTTATATTTAATCTTT+TGG | - | chr6_2:68964357-68964376 | None:intergenic | 15.0% |
!! | TTAACAAGAAAAGTAAACAA+CGG | + | chr6_2:68963689-68963708 | Msa0925680:intron | 20.0% |
!! | TGTTTATTCTATTAGATTAG+AGG | - | chr6_2:68963838-68963857 | None:intergenic | 20.0% |
!!! | TTTTCCAATTGTTTATAGAT+GGG | + | chr6_2:68963927-68963946 | Msa0925680:intron | 20.0% |
!! | CAAAATGAACATATACAATA+TGG | - | chr6_2:68964069-68964088 | None:intergenic | 20.0% |
!! | ATAATATGTATCTCAAATCA+TGG | - | chr6_2:68964098-68964117 | None:intergenic | 20.0% |
!! | TTAATTAAGAGCTAAGTTAT+AGG | + | chr6_2:68964178-68964197 | Msa0925680:intron | 20.0% |
!! | TTAACAAGAAAAGTAAACAA+CGG | + | chr6_2:68963689-68963708 | Msa0925680:intron | 20.0% |
!! | TGTTTATTCTATTAGATTAG+AGG | - | chr6_2:68963838-68963857 | None:intergenic | 20.0% |
!!! | TTTTCCAATTGTTTATAGAT+GGG | + | chr6_2:68963927-68963946 | Msa0925680:intron | 20.0% |
!! | CAAAATGAACATATACAATA+TGG | - | chr6_2:68964069-68964088 | None:intergenic | 20.0% |
!! | ATAATATGTATCTCAAATCA+TGG | - | chr6_2:68964098-68964117 | None:intergenic | 20.0% |
!! | TTAATTAAGAGCTAAGTTAT+AGG | + | chr6_2:68964178-68964197 | Msa0925680:intron | 20.0% |
! | AAATTAAGAGACATGATTCA+AGG | + | chr6_2:68963904-68963923 | Msa0925680:intron | 25.0% |
!! | GTTTTCCAATTGTTTATAGA+TGG | + | chr6_2:68963926-68963945 | Msa0925680:intron | 25.0% |
! | TCAACTTATTAAGATCAAGA+TGG | + | chr6_2:68963989-68964008 | Msa0925680:intron | 25.0% |
!! | TATGAAGTAAGTATTTTCTC+TGG | + | chr6_2:68964233-68964252 | Msa0925680:intron | 25.0% |
! | TAAAATTTGTGGAGTGAATT+TGG | + | chr6_2:68964798-68964817 | Msa0925680:CDS | 25.0% |
! | AAATTAAGAGACATGATTCA+AGG | + | chr6_2:68963904-68963923 | Msa0925680:intron | 25.0% |
!! | GTTTTCCAATTGTTTATAGA+TGG | + | chr6_2:68963926-68963945 | Msa0925680:intron | 25.0% |
! | TCAACTTATTAAGATCAAGA+TGG | + | chr6_2:68963989-68964008 | Msa0925680:intron | 25.0% |
!! | TATGAAGTAAGTATTTTCTC+TGG | + | chr6_2:68964233-68964252 | Msa0925680:intron | 25.0% |
! | TAAAATTTGTGGAGTGAATT+TGG | + | chr6_2:68964798-68964817 | Msa0925680:CDS | 25.0% |
!! | ATGATTCTAGCTTCTTTCAT+TGG | + | chr6_2:68963791-68963810 | Msa0925680:intron | 30.0% |
GTATTAAGAGACATGATTCA+AGG | - | chr6_2:68963870-68963889 | None:intergenic | 30.0% | |
AATGCATAGAATGTACTTAC+AGG | - | chr6_2:68963955-68963974 | None:intergenic | 30.0% | |
GAACATATACAATATGGTCA+AGG | - | chr6_2:68964063-68964082 | None:intergenic | 30.0% | |
TAAGAGCTAAGTTATAGGTT+TGG | + | chr6_2:68964183-68964202 | Msa0925680:intron | 30.0% | |
CACATTTGCATCTTACATAA+AGG | + | chr6_2:68964375-68964394 | Msa0925680:intron | 30.0% | |
TGAGTACATTTGATTATGCT+TGG | + | chr6_2:68964491-68964510 | Msa0925680:CDS | 30.0% | |
GCTTGGAACACAATTAATAA+CGG | + | chr6_2:68964508-68964527 | Msa0925680:CDS | 30.0% | |
GGCAACATACTTGATTTAAT+TGG | - | chr6_2:68964649-68964668 | None:intergenic | 30.0% | |
!! | TCGGATTTGTTATCTTTCAT+AGG | - | chr6_2:68964670-68964689 | None:intergenic | 30.0% |
GTTGTATCTTGAACTATCTT+AGG | - | chr6_2:68964754-68964773 | None:intergenic | 30.0% | |
! | AATTTTACCACTCTTCTCAA+CGG | - | chr6_2:68964785-68964804 | None:intergenic | 30.0% |
!! | ATGATTCTAGCTTCTTTCAT+TGG | + | chr6_2:68963791-68963810 | Msa0925680:intron | 30.0% |
GTATTAAGAGACATGATTCA+AGG | - | chr6_2:68963870-68963889 | None:intergenic | 30.0% | |
AATGCATAGAATGTACTTAC+AGG | - | chr6_2:68963955-68963974 | None:intergenic | 30.0% | |
GAACATATACAATATGGTCA+AGG | - | chr6_2:68964063-68964082 | None:intergenic | 30.0% | |
TAAGAGCTAAGTTATAGGTT+TGG | + | chr6_2:68964183-68964202 | Msa0925680:intron | 30.0% | |
CACATTTGCATCTTACATAA+AGG | + | chr6_2:68964375-68964394 | Msa0925680:intron | 30.0% | |
TGAGTACATTTGATTATGCT+TGG | + | chr6_2:68964491-68964510 | Msa0925680:CDS | 30.0% | |
GCTTGGAACACAATTAATAA+CGG | + | chr6_2:68964508-68964527 | Msa0925680:CDS | 30.0% | |
GGCAACATACTTGATTTAAT+TGG | - | chr6_2:68964649-68964668 | None:intergenic | 30.0% | |
!! | TCGGATTTGTTATCTTTCAT+AGG | - | chr6_2:68964670-68964689 | None:intergenic | 30.0% |
GTTGTATCTTGAACTATCTT+AGG | - | chr6_2:68964754-68964773 | None:intergenic | 30.0% | |
! | AATTTTACCACTCTTCTCAA+CGG | - | chr6_2:68964785-68964804 | None:intergenic | 30.0% |
!! | TTCTAGCTTCTTTCATTGGA+AGG | + | chr6_2:68963795-68963814 | Msa0925680:intron | 35.0% |
ATACAATATGGTCAAGGCAA+TGG | - | chr6_2:68964057-68964076 | None:intergenic | 35.0% | |
AGTTATAGGTTTGGAAGTCT+AGG | + | chr6_2:68964192-68964211 | Msa0925680:intron | 35.0% | |
CAGTTGAAATTCTGTTTGCA+AGG | - | chr6_2:68964470-68964489 | None:intergenic | 35.0% | |
ACACAATTAATAACGGTCCA+CGG | + | chr6_2:68964515-68964534 | Msa0925680:CDS | 35.0% | |
AGCATTTCAAGAATATCACC+GGG | - | chr6_2:68964544-68964563 | None:intergenic | 35.0% | |
GAGCATTTCAAGAATATCAC+CGG | - | chr6_2:68964545-68964564 | None:intergenic | 35.0% | |
ATCTGAAAATGTTCTTGTGC+TGG | - | chr6_2:68964581-68964600 | None:intergenic | 35.0% | |
!! | CCTACTTTCTTTTGAGTGAA+GGG | - | chr6_2:68964622-68964641 | None:intergenic | 35.0% |
CCTTCACTCAAAAGAAAGTA+GGG | + | chr6_2:68964620-68964639 | Msa0925680:CDS | 35.0% | |
GAGAAGAGTGGTAAAATTTG+TGG | + | chr6_2:68964787-68964806 | Msa0925680:CDS | 35.0% | |
TTCTATTTGTACAAAGACGC+CGG | + | chr6_2:68964828-68964847 | Msa0925680:CDS | 35.0% | |
! | GTTAGGTGTCATGAACATAA+AGG | + | chr6_2:68964862-68964881 | Msa0925680:CDS | 35.0% |
TCCAAGTCAGAATCAAAAAG+AGG | + | chr6_2:68964901-68964920 | Msa0925680:CDS | 35.0% | |
!! | TCCTCTTTTTGATTCTGACT+TGG | - | chr6_2:68964905-68964924 | None:intergenic | 35.0% |
CAAAAAGAGGAAATGCTTGT+AGG | + | chr6_2:68964914-68964933 | Msa0925680:CDS | 35.0% | |
!! | TTCTAGCTTCTTTCATTGGA+AGG | + | chr6_2:68963795-68963814 | Msa0925680:intron | 35.0% |
ATACAATATGGTCAAGGCAA+TGG | - | chr6_2:68964057-68964076 | None:intergenic | 35.0% | |
AGTTATAGGTTTGGAAGTCT+AGG | + | chr6_2:68964192-68964211 | Msa0925680:intron | 35.0% | |
CAGTTGAAATTCTGTTTGCA+AGG | - | chr6_2:68964470-68964489 | None:intergenic | 35.0% | |
ACACAATTAATAACGGTCCA+CGG | + | chr6_2:68964515-68964534 | Msa0925680:CDS | 35.0% | |
AGCATTTCAAGAATATCACC+GGG | - | chr6_2:68964544-68964563 | None:intergenic | 35.0% | |
GAGCATTTCAAGAATATCAC+CGG | - | chr6_2:68964545-68964564 | None:intergenic | 35.0% | |
ATCTGAAAATGTTCTTGTGC+TGG | - | chr6_2:68964581-68964600 | None:intergenic | 35.0% | |
!! | CCTACTTTCTTTTGAGTGAA+GGG | - | chr6_2:68964622-68964641 | None:intergenic | 35.0% |
CCTTCACTCAAAAGAAAGTA+GGG | + | chr6_2:68964620-68964639 | Msa0925680:CDS | 35.0% | |
GAGAAGAGTGGTAAAATTTG+TGG | + | chr6_2:68964787-68964806 | Msa0925680:CDS | 35.0% | |
TTCTATTTGTACAAAGACGC+CGG | + | chr6_2:68964828-68964847 | Msa0925680:CDS | 35.0% | |
! | GTTAGGTGTCATGAACATAA+AGG | + | chr6_2:68964862-68964881 | Msa0925680:CDS | 35.0% |
TCCAAGTCAGAATCAAAAAG+AGG | + | chr6_2:68964901-68964920 | Msa0925680:CDS | 35.0% | |
!! | TCCTCTTTTTGATTCTGACT+TGG | - | chr6_2:68964905-68964924 | None:intergenic | 35.0% |
CAAAAAGAGGAAATGCTTGT+AGG | + | chr6_2:68964914-68964933 | Msa0925680:CDS | 35.0% | |
AACATTTGTGTCGTGTCTCA+TGG | - | chr6_2:68963742-68963761 | None:intergenic | 40.0% | |
GGAGCCCATCTATAAACAAT+TGG | - | chr6_2:68963934-68963953 | None:intergenic | 40.0% | |
TGTTGAACAGATGCAAACCA+AGG | + | chr6_2:68964438-68964457 | Msa0925680:intron | 40.0% | |
GTTGAACAGATGCAAACCAA+GGG | + | chr6_2:68964439-68964458 | Msa0925680:intron | 40.0% | |
AGTGAAGGGTAGAAGTGATT+TGG | - | chr6_2:68964608-68964627 | None:intergenic | 40.0% | |
CCCTTCACTCAAAAGAAAGT+AGG | + | chr6_2:68964619-68964638 | Msa0925680:CDS | 40.0% | |
!! | CCCTACTTTCTTTTGAGTGA+AGG | - | chr6_2:68964623-68964642 | None:intergenic | 40.0% |
AAATCCGATGAAGCAGACAA+TGG | + | chr6_2:68964682-68964701 | Msa0925680:CDS | 40.0% | |
! | GATTTTTCCGTTGAGAAGAG+TGG | + | chr6_2:68964775-68964794 | Msa0925680:CDS | 40.0% |
!!! | CACCTAACTCTTTTTTCGAC+CGG | - | chr6_2:68964850-68964869 | None:intergenic | 40.0% |
AACATTTGTGTCGTGTCTCA+TGG | - | chr6_2:68963742-68963761 | None:intergenic | 40.0% | |
GGAGCCCATCTATAAACAAT+TGG | - | chr6_2:68963934-68963953 | None:intergenic | 40.0% | |
TGTTGAACAGATGCAAACCA+AGG | + | chr6_2:68964438-68964457 | Msa0925680:intron | 40.0% | |
GTTGAACAGATGCAAACCAA+GGG | + | chr6_2:68964439-68964458 | Msa0925680:intron | 40.0% | |
AGTGAAGGGTAGAAGTGATT+TGG | - | chr6_2:68964608-68964627 | None:intergenic | 40.0% | |
CCCTTCACTCAAAAGAAAGT+AGG | + | chr6_2:68964619-68964638 | Msa0925680:CDS | 40.0% | |
!! | CCCTACTTTCTTTTGAGTGA+AGG | - | chr6_2:68964623-68964642 | None:intergenic | 40.0% |
AAATCCGATGAAGCAGACAA+TGG | + | chr6_2:68964682-68964701 | Msa0925680:CDS | 40.0% | |
! | GATTTTTCCGTTGAGAAGAG+TGG | + | chr6_2:68964775-68964794 | Msa0925680:CDS | 40.0% |
!!! | CACCTAACTCTTTTTTCGAC+CGG | - | chr6_2:68964850-68964869 | None:intergenic | 40.0% |
GGAATTTGAACACGCGAGAT+AGG | - | chr6_2:68964720-68964739 | None:intergenic | 45.0% | |
GGAATTTGAACACGCGAGAT+AGG | - | chr6_2:68964720-68964739 | None:intergenic | 45.0% | |
! | TGTTTGCAAGGCATCTCCCT+TGG | - | chr6_2:68964458-68964477 | None:intergenic | 50.0% |
GCTGCCATTGTCTGCTTCAT+CGG | - | chr6_2:68964689-68964708 | None:intergenic | 50.0% | |
CTCGCGTGTTCAAATTCCAC+CGG | + | chr6_2:68964722-68964741 | Msa0925680:CDS | 50.0% | |
GAACTATCTTAGGACGCGAC+CGG | - | chr6_2:68964744-68964763 | None:intergenic | 50.0% | |
CGCCGGTCGAAAAAAGAGTT+AGG | + | chr6_2:68964845-68964864 | Msa0925680:CDS | 50.0% | |
! | TGTTTGCAAGGCATCTCCCT+TGG | - | chr6_2:68964458-68964477 | None:intergenic | 50.0% |
GCTGCCATTGTCTGCTTCAT+CGG | - | chr6_2:68964689-68964708 | None:intergenic | 50.0% | |
CTCGCGTGTTCAAATTCCAC+CGG | + | chr6_2:68964722-68964741 | Msa0925680:CDS | 50.0% | |
GAACTATCTTAGGACGCGAC+CGG | - | chr6_2:68964744-68964763 | None:intergenic | 50.0% | |
CGCCGGTCGAAAAAAGAGTT+AGG | + | chr6_2:68964845-68964864 | Msa0925680:CDS | 50.0% | |
AATAACGGTCCACGGCGTCC+CGG | + | chr6_2:68964523-68964542 | Msa0925680:CDS | 60.0% | |
AGAATATCACCGGGACGCCG+TGG | - | chr6_2:68964535-68964554 | None:intergenic | 60.0% | |
CTATCTTAGGACGCGACCGG+TGG | - | chr6_2:68964741-68964760 | None:intergenic | 60.0% | |
AATAACGGTCCACGGCGTCC+CGG | + | chr6_2:68964523-68964542 | Msa0925680:CDS | 60.0% | |
AGAATATCACCGGGACGCCG+TGG | - | chr6_2:68964535-68964554 | None:intergenic | 60.0% | |
CTATCTTAGGACGCGACCGG+TGG | - | chr6_2:68964741-68964760 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6_2 | gene | 68963640 | 68964942 | 68963640 | ID=Msa0925680;Name=Msa0925680 |
chr6_2 | mRNA | 68963640 | 68964942 | 68963640 | ID=Msa0925680-mRNA-1;Parent=Msa0925680;Name=Msa0925680-mRNA-1;_AED=0.42;_eAED=0.42;_QI=0|0|0|0.5|0|0.5|2|0|167 |
chr6_2 | exon | 68963640 | 68963648 | 68963640 | ID=Msa0925680-mRNA-1:exon:11068;Parent=Msa0925680-mRNA-1 |
chr6_2 | exon | 68964448 | 68964942 | 68964448 | ID=Msa0925680-mRNA-1:exon:11069;Parent=Msa0925680-mRNA-1 |
chr6_2 | CDS | 68963640 | 68963648 | 68963640 | ID=Msa0925680-mRNA-1:cds;Parent=Msa0925680-mRNA-1 |
chr6_2 | CDS | 68964448 | 68964942 | 68964448 | ID=Msa0925680-mRNA-1:cds;Parent=Msa0925680-mRNA-1 |
Gene Sequence |
Protein sequence |