Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0926030 | KAG2385359.1 | 64.130 | 92 | 18 | 1 | 1 | 77 | 1 | 92 | 2.37e-33 | 125 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0926030 | sp|Q9FG68|RAX1_ARATH | 48.305 | 118 | 20 | 1 | 1 | 77 | 1 | 118 | 7.87e-29 | 108 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0926030 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0926030 | MtrunA17_Chr6g0487491 | 56.061 | 132 | 9 | 1 | 1 | 83 | 1 | 132 | 6.49e-42 | 137 |
| Msa0926030 | MtrunA17_Chr4g0028311 | 50.000 | 118 | 18 | 1 | 1 | 77 | 1 | 118 | 2.02e-30 | 109 |
| Msa0926030 | MtrunA17_Chr3g0135311 | 50.000 | 116 | 17 | 2 | 1 | 75 | 1 | 116 | 4.31e-30 | 108 |
| Msa0926030 | MtrunA17_Chr5g0400821 | 46.610 | 118 | 22 | 1 | 1 | 77 | 1 | 118 | 7.85e-29 | 104 |
| Msa0926030 | MtrunA17_Chr1g0152011 | 45.763 | 118 | 23 | 1 | 1 | 77 | 1 | 118 | 3.13e-28 | 103 |
| Msa0926030 | MtrunA17_Chr1g0151941 | 46.610 | 118 | 22 | 1 | 1 | 77 | 1 | 118 | 7.54e-28 | 100 |
| Msa0926030 | MtrunA17_Chr7g0264641 | 44.915 | 118 | 24 | 1 | 1 | 77 | 1 | 118 | 7.80e-27 | 98.6 |
| Msa0926030 | MtrunA17_Chr2g0327351 | 46.847 | 111 | 18 | 1 | 1 | 70 | 1 | 111 | 2.38e-26 | 98.6 |
| Msa0926030 | MtrunA17_Chr4g0072751 | 45.946 | 111 | 19 | 1 | 1 | 70 | 1 | 111 | 2.96e-25 | 95.9 |
| Msa0926030 | MtrunA17_Chr4g0054391 | 46.364 | 110 | 18 | 1 | 1 | 69 | 1 | 110 | 5.25e-25 | 94.4 |
| Msa0926030 | MtrunA17_Chr3g0103281 | 42.636 | 129 | 29 | 4 | 1 | 84 | 1 | 129 | 7.70e-21 | 84.0 |
| Msa0926030 | MtrunA17_Chr1g0187761 | 41.667 | 120 | 28 | 2 | 1 | 79 | 1 | 119 | 1.37e-20 | 82.0 |
| Msa0926030 | MtrunA17_Chr7g0217221 | 41.026 | 117 | 27 | 2 | 1 | 76 | 1 | 116 | 2.02e-20 | 82.0 |
| Msa0926030 | MtrunA17_Chr6g0452271 | 40.678 | 118 | 28 | 2 | 1 | 77 | 1 | 117 | 4.19e-20 | 82.0 |
| Msa0926030 | MtrunA17_Chr8g0349261 | 37.815 | 119 | 32 | 2 | 1 | 77 | 1 | 119 | 4.84e-20 | 81.3 |
| Msa0926030 | MtrunA17_Chr1g0203411 | 38.525 | 122 | 33 | 3 | 1 | 81 | 1 | 121 | 5.82e-20 | 80.9 |
| Msa0926030 | MtrunA17_Chr2g0323411 | 37.288 | 118 | 32 | 2 | 1 | 77 | 1 | 117 | 1.53e-19 | 80.5 |
| Msa0926030 | MtrunA17_Chr8g0346561 | 38.793 | 116 | 29 | 3 | 1 | 75 | 1 | 115 | 2.20e-19 | 79.7 |
| Msa0926030 | MtrunA17_Chr7g0217741 | 38.793 | 116 | 29 | 2 | 1 | 75 | 1 | 115 | 2.37e-19 | 79.7 |
| Msa0926030 | MtrunA17_Chr1g0194951 | 39.655 | 116 | 28 | 2 | 1 | 75 | 1 | 115 | 2.61e-19 | 80.1 |
| Msa0926030 | MtrunA17_Chr7g0275911 | 37.931 | 116 | 30 | 2 | 1 | 75 | 1 | 115 | 3.61e-19 | 78.6 |
| Msa0926030 | MtrunA17_Chr3g0115821 | 38.136 | 118 | 31 | 3 | 1 | 77 | 1 | 117 | 4.35e-19 | 79.3 |
| Msa0926030 | MtrunA17_Chr4g0048511 | 37.815 | 119 | 31 | 4 | 1 | 77 | 1 | 118 | 5.59e-19 | 79.0 |
| Msa0926030 | MtrunA17_Chr4g0068061 | 37.500 | 128 | 35 | 4 | 1 | 84 | 1 | 127 | 5.91e-19 | 79.0 |
| Msa0926030 | MtrunA17_Chr4g0039971 | 37.500 | 128 | 33 | 3 | 1 | 82 | 2 | 128 | 6.91e-19 | 79.0 |
| Msa0926030 | MtrunA17_Chr4g0042671 | 39.316 | 117 | 29 | 2 | 1 | 76 | 1 | 116 | 9.26e-19 | 78.6 |
| Msa0926030 | MtrunA17_Chr1g0167661 | 37.500 | 120 | 33 | 2 | 1 | 79 | 1 | 119 | 1.34e-18 | 77.0 |
| Msa0926030 | MtrunA17_Chr4g0060721 | 37.931 | 116 | 30 | 2 | 1 | 75 | 2 | 116 | 2.05e-18 | 77.4 |
| Msa0926030 | MtrunA17_Chr7g0269831 | 35.484 | 124 | 38 | 2 | 1 | 83 | 1 | 123 | 2.40e-18 | 77.4 |
| Msa0926030 | MtrunA17_Chr7g0254411 | 37.931 | 116 | 30 | 2 | 1 | 75 | 1 | 115 | 3.61e-18 | 76.6 |
| Msa0926030 | MtrunA17_Chr5g0410961 | 36.441 | 118 | 33 | 2 | 1 | 77 | 1 | 117 | 3.71e-18 | 76.6 |
| Msa0926030 | MtrunA17_Chr1g0167691 | 37.288 | 118 | 32 | 2 | 1 | 77 | 1 | 117 | 4.18e-18 | 75.5 |
| Msa0926030 | MtrunA17_Chr3g0092401 | 38.793 | 116 | 29 | 2 | 1 | 75 | 2 | 116 | 7.99e-18 | 75.5 |
| Msa0926030 | MtrunA17_Chr6g0453471 | 37.931 | 116 | 30 | 2 | 1 | 75 | 1 | 115 | 1.61e-17 | 75.1 |
| Msa0926030 | MtrunA17_Chr7g0261281 | 37.931 | 116 | 30 | 2 | 1 | 75 | 1 | 115 | 1.92e-17 | 73.9 |
| Msa0926030 | MtrunA17_Chr2g0281071 | 36.134 | 119 | 33 | 4 | 1 | 77 | 1 | 118 | 2.47e-17 | 74.3 |
| Msa0926030 | MtrunA17_Chr7g0228891 | 37.069 | 116 | 33 | 1 | 1 | 76 | 1 | 116 | 2.87e-17 | 73.6 |
| Msa0926030 | MtrunA17_Chr7g0274581 | 37.069 | 116 | 31 | 2 | 1 | 75 | 1 | 115 | 2.94e-17 | 72.4 |
| Msa0926030 | MtrunA17_Chr6g0453211 | 38.739 | 111 | 26 | 2 | 1 | 70 | 1 | 110 | 5.68e-17 | 73.2 |
| Msa0926030 | MtrunA17_Chr4g0037141 | 33.898 | 118 | 36 | 2 | 1 | 77 | 1 | 117 | 7.04e-17 | 72.8 |
| Msa0926030 | MtrunA17_Chr3g0121241 | 35.088 | 114 | 32 | 2 | 5 | 77 | 35 | 147 | 8.94e-17 | 72.4 |
| Msa0926030 | MtrunA17_Chr7g0247141 | 53.571 | 56 | 26 | 0 | 1 | 56 | 1 | 56 | 9.63e-17 | 67.4 |
| Msa0926030 | MtrunA17_Chr4g0057031 | 37.288 | 118 | 32 | 2 | 1 | 77 | 1 | 117 | 1.01e-16 | 72.0 |
| Msa0926030 | MtrunA17_Chr3g0131121 | 33.846 | 130 | 39 | 3 | 1 | 84 | 1 | 129 | 1.71e-16 | 71.6 |
| Msa0926030 | MtrunA17_Chr4g0070641 | 36.207 | 116 | 32 | 2 | 1 | 75 | 1 | 115 | 1.71e-16 | 69.7 |
| Msa0926030 | MtrunA17_Chr3g0110351 | 36.752 | 117 | 32 | 2 | 1 | 76 | 1 | 116 | 2.38e-16 | 71.6 |
| Msa0926030 | MtrunA17_Chr5g0434571 | 36.752 | 117 | 32 | 2 | 1 | 76 | 37 | 152 | 2.65e-16 | 71.6 |
| Msa0926030 | MtrunA17_Chr4g0070611 | 36.207 | 116 | 32 | 2 | 1 | 75 | 1 | 115 | 3.27e-16 | 71.2 |
| Msa0926030 | MtrunA17_Chr8g0385321 | 35.345 | 116 | 33 | 2 | 1 | 75 | 1 | 115 | 5.24e-16 | 70.5 |
| Msa0926030 | MtrunA17_Chr5g0395281 | 35.938 | 128 | 35 | 3 | 1 | 82 | 1 | 127 | 5.19e-15 | 67.8 |
| Msa0926030 | MtrunA17_Chr1g0193371 | 37.931 | 116 | 30 | 3 | 1 | 75 | 1 | 115 | 6.81e-15 | 67.8 |
| Msa0926030 | MtrunA17_Chr4g0058631 | 35.156 | 128 | 36 | 3 | 1 | 82 | 1 | 127 | 2.70e-14 | 66.2 |
| Msa0926030 | MtrunA17_Chr7g0270891 | 37.069 | 116 | 31 | 2 | 1 | 75 | 1 | 115 | 2.82e-14 | 66.2 |
| Msa0926030 | MtrunA17_Chr3g0117091 | 36.154 | 130 | 36 | 4 | 1 | 84 | 1 | 129 | 6.07e-14 | 65.1 |
| Msa0926030 | MtrunA17_Chr2g0311221 | 37.273 | 110 | 27 | 2 | 2 | 70 | 4 | 112 | 7.23e-14 | 64.7 |
| Msa0926030 | MtrunA17_Chr1g0193801 | 36.207 | 116 | 32 | 2 | 1 | 75 | 1 | 115 | 8.79e-14 | 64.7 |
| Msa0926030 | MtrunA17_Chr7g0271241 | 36.364 | 110 | 28 | 2 | 1 | 69 | 1 | 109 | 1.86e-12 | 60.8 |
| Msa0926030 | MtrunA17_Chr1g0211161 | 35.345 | 116 | 33 | 2 | 3 | 77 | 4 | 118 | 2.26e-12 | 60.1 |
| Msa0926030 | MtrunA17_Chr4g0022901 | 35.294 | 119 | 34 | 3 | 1 | 77 | 1 | 118 | 2.65e-12 | 60.1 |
| Msa0926030 | MtrunA17_Chr4g0042611 | 54.348 | 46 | 20 | 1 | 1 | 46 | 1 | 45 | 8.17e-12 | 55.8 |
| Msa0926030 | MtrunA17_Chr2g0294811 | 58.696 | 46 | 18 | 1 | 1 | 46 | 1 | 45 | 9.13e-12 | 56.2 |
| Msa0926030 | MtrunA17_Chr4g0022931 | 35.043 | 117 | 33 | 3 | 1 | 75 | 1 | 116 | 1.74e-11 | 57.8 |
| Msa0926030 | MtrunA17_Chr4g0022891 | 33.333 | 114 | 34 | 2 | 1 | 73 | 1 | 113 | 1.77e-11 | 57.8 |
| Msa0926030 | MtrunA17_Chr4g0022911 | 34.454 | 119 | 35 | 3 | 1 | 77 | 1 | 118 | 1.78e-11 | 58.2 |
| Msa0926030 | MtrunA17_Chr7g0247131 | 46.875 | 64 | 21 | 2 | 12 | 75 | 31 | 81 | 2.72e-11 | 57.4 |
| Msa0926030 | MtrunA17_Chr5g0434831 | 33.333 | 108 | 30 | 2 | 12 | 78 | 7 | 113 | 3.46e-11 | 56.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0926030 | AT5G23000.1 | 48.305 | 118 | 20 | 1 | 1 | 77 | 1 | 118 | 8.00e-30 | 108 |
| Msa0926030 | AT4G37780.1 | 43.200 | 125 | 30 | 1 | 1 | 84 | 1 | 125 | 3.90e-29 | 105 |
| Msa0926030 | AT2G36890.1 | 45.902 | 122 | 25 | 1 | 1 | 81 | 1 | 122 | 2.08e-27 | 101 |
| Msa0926030 | AT5G65790.1 | 44.000 | 125 | 29 | 1 | 1 | 84 | 1 | 125 | 2.13e-27 | 102 |
| Msa0926030 | AT3G49690.1 | 45.763 | 118 | 23 | 1 | 1 | 77 | 1 | 118 | 2.14e-27 | 101 |
| Msa0926030 | AT2G36890.2 | 45.902 | 122 | 25 | 1 | 1 | 81 | 42 | 163 | 2.52e-27 | 101 |
| Msa0926030 | AT5G57620.1 | 46.610 | 118 | 22 | 1 | 1 | 77 | 1 | 118 | 4.43e-27 | 100 |
| Msa0926030 | AT5G49330.1 | 41.379 | 116 | 26 | 3 | 1 | 75 | 1 | 115 | 2.21e-20 | 83.2 |
| Msa0926030 | AT3G61250.1 | 38.136 | 118 | 31 | 2 | 1 | 77 | 1 | 117 | 7.51e-20 | 81.3 |
| Msa0926030 | AT4G28110.1 | 38.136 | 118 | 31 | 2 | 1 | 77 | 1 | 117 | 9.19e-20 | 80.9 |
| Msa0926030 | AT5G56110.1 | 41.860 | 129 | 30 | 4 | 1 | 84 | 1 | 129 | 9.44e-20 | 81.3 |
| Msa0926030 | AT3G47600.1 | 41.379 | 116 | 26 | 2 | 1 | 75 | 1 | 115 | 9.89e-20 | 81.3 |
| Msa0926030 | AT3G01140.2 | 38.983 | 118 | 30 | 2 | 1 | 77 | 1 | 117 | 1.85e-19 | 80.5 |
| Msa0926030 | AT5G15310.4 | 38.983 | 118 | 30 | 2 | 1 | 77 | 1 | 117 | 1.86e-19 | 79.3 |
| Msa0926030 | AT5G62470.1 | 40.870 | 115 | 27 | 2 | 1 | 75 | 1 | 114 | 1.88e-19 | 80.5 |
| Msa0926030 | AT1G79180.1 | 39.669 | 121 | 31 | 2 | 2 | 81 | 4 | 123 | 2.31e-19 | 79.7 |
| Msa0926030 | AT2G47460.1 | 39.655 | 116 | 28 | 2 | 1 | 75 | 1 | 115 | 2.61e-19 | 80.5 |
| Msa0926030 | AT5G62470.2 | 40.517 | 116 | 27 | 2 | 1 | 75 | 1 | 115 | 2.84e-19 | 80.1 |
| Msa0926030 | AT5G15310.1 | 38.983 | 118 | 30 | 2 | 1 | 77 | 1 | 117 | 3.15e-19 | 79.7 |
| Msa0926030 | AT5G15310.2 | 38.983 | 118 | 30 | 2 | 1 | 77 | 1 | 117 | 3.57e-19 | 79.7 |
| Msa0926030 | AT1G74650.1 | 38.983 | 118 | 30 | 2 | 1 | 77 | 1 | 117 | 3.87e-19 | 79.7 |
| Msa0926030 | AT1G08810.1 | 39.655 | 116 | 28 | 2 | 1 | 75 | 1 | 115 | 3.89e-19 | 79.0 |
| Msa0926030 | AT5G16770.4 | 35.938 | 128 | 35 | 3 | 1 | 82 | 1 | 127 | 3.91e-19 | 79.7 |
| Msa0926030 | AT5G16770.3 | 35.938 | 128 | 35 | 3 | 1 | 82 | 1 | 127 | 3.91e-19 | 79.7 |
| Msa0926030 | AT4G21440.1 | 37.288 | 118 | 32 | 3 | 1 | 77 | 1 | 117 | 4.07e-19 | 79.7 |
| Msa0926030 | AT1G16490.1 | 39.167 | 120 | 31 | 2 | 2 | 80 | 4 | 122 | 4.31e-19 | 79.0 |
| Msa0926030 | AT5G16770.1 | 35.938 | 128 | 35 | 3 | 1 | 82 | 1 | 127 | 5.99e-19 | 79.3 |
| Msa0926030 | AT5G16770.2 | 35.938 | 128 | 35 | 3 | 1 | 82 | 1 | 127 | 5.99e-19 | 79.3 |
| Msa0926030 | AT4G17785.2 | 40.336 | 119 | 28 | 3 | 1 | 77 | 1 | 118 | 6.01e-19 | 79.3 |
| Msa0926030 | AT3G23250.1 | 37.795 | 127 | 34 | 3 | 1 | 83 | 1 | 126 | 6.53e-19 | 78.6 |
| Msa0926030 | AT4G17785.1 | 40.336 | 119 | 28 | 3 | 1 | 77 | 1 | 118 | 7.21e-19 | 79.3 |
| Msa0926030 | AT1G56160.1 | 40.678 | 118 | 28 | 2 | 2 | 78 | 4 | 120 | 1.39e-18 | 77.8 |
| Msa0926030 | AT2G31180.1 | 40.517 | 116 | 27 | 2 | 1 | 75 | 1 | 115 | 2.11e-18 | 76.6 |
| Msa0926030 | AT3G28910.1 | 39.655 | 116 | 28 | 2 | 1 | 75 | 1 | 115 | 4.25e-18 | 76.6 |
| Msa0926030 | AT4G12350.1 | 38.983 | 118 | 30 | 2 | 1 | 77 | 1 | 117 | 5.03e-18 | 76.3 |
| Msa0926030 | AT3G12820.1 | 39.655 | 116 | 28 | 3 | 3 | 77 | 5 | 119 | 8.47e-18 | 74.7 |
| Msa0926030 | AT3G02940.2 | 34.375 | 128 | 37 | 3 | 1 | 82 | 1 | 127 | 1.82e-17 | 74.7 |
| Msa0926030 | AT3G62610.1 | 37.607 | 117 | 31 | 2 | 1 | 76 | 1 | 116 | 1.82e-17 | 75.1 |
| Msa0926030 | AT3G02940.1 | 34.746 | 118 | 35 | 2 | 1 | 77 | 1 | 117 | 2.41e-17 | 74.7 |
| Msa0926030 | AT3G02940.3 | 34.746 | 118 | 35 | 2 | 1 | 77 | 1 | 117 | 2.41e-17 | 74.7 |
| Msa0926030 | AT1G22640.1 | 33.898 | 118 | 36 | 2 | 1 | 77 | 1 | 117 | 2.83e-17 | 73.6 |
| Msa0926030 | AT4G22680.1 | 38.136 | 118 | 31 | 2 | 1 | 77 | 1 | 117 | 3.51e-17 | 73.6 |
| Msa0926030 | AT2G16720.1 | 34.746 | 118 | 35 | 2 | 1 | 77 | 1 | 117 | 4.03e-17 | 73.6 |
| Msa0926030 | AT3G01140.1 | 37.288 | 118 | 32 | 2 | 1 | 77 | 44 | 160 | 5.32e-17 | 73.9 |
| Msa0926030 | AT3G13540.1 | 35.652 | 115 | 32 | 2 | 4 | 77 | 15 | 128 | 5.96e-17 | 72.8 |
| Msa0926030 | AT3G28470.1 | 39.640 | 111 | 25 | 2 | 1 | 70 | 1 | 110 | 9.63e-17 | 73.2 |
| Msa0926030 | AT4G34990.1 | 34.746 | 118 | 35 | 2 | 1 | 77 | 1 | 117 | 1.40e-16 | 72.0 |
| Msa0926030 | AT1G66230.1 | 37.069 | 116 | 33 | 2 | 1 | 76 | 1 | 116 | 2.41e-16 | 71.6 |
| Msa0926030 | AT4G09460.1 | 33.898 | 118 | 36 | 2 | 1 | 77 | 1 | 117 | 3.20e-16 | 70.5 |
| Msa0926030 | AT5G16600.1 | 37.607 | 117 | 31 | 3 | 1 | 76 | 1 | 116 | 4.79e-16 | 71.2 |
| Msa0926030 | AT4G38620.1 | 32.812 | 128 | 39 | 3 | 1 | 82 | 1 | 127 | 4.95e-16 | 70.9 |
| Msa0926030 | AT4G05100.1 | 35.294 | 119 | 34 | 3 | 1 | 77 | 1 | 118 | 1.04e-15 | 70.1 |
| Msa0926030 | AT5G65230.1 | 34.746 | 118 | 35 | 2 | 1 | 77 | 1 | 117 | 2.34e-15 | 69.3 |
| Msa0926030 | AT5G14340.1 | 38.793 | 116 | 31 | 3 | 1 | 76 | 13 | 128 | 4.58e-15 | 68.2 |
| Msa0926030 | AT4G01680.3 | 37.931 | 116 | 30 | 2 | 1 | 75 | 1 | 115 | 4.73e-15 | 67.8 |
| Msa0926030 | AT4G01680.1 | 37.931 | 116 | 30 | 2 | 1 | 75 | 1 | 115 | 9.33e-15 | 67.8 |
| Msa0926030 | AT5G62320.1 | 31.852 | 135 | 40 | 3 | 2 | 84 | 3 | 137 | 7.47e-14 | 64.3 |
| Msa0926030 | AT5G61420.2 | 33.051 | 118 | 37 | 2 | 1 | 77 | 1 | 117 | 9.72e-14 | 65.1 |
| Msa0926030 | AT1G57560.2 | 35.593 | 118 | 34 | 2 | 1 | 77 | 1 | 117 | 1.51e-13 | 63.9 |
| Msa0926030 | AT1G57560.1 | 35.593 | 118 | 34 | 2 | 1 | 77 | 1 | 117 | 1.56e-13 | 64.3 |
| Msa0926030 | AT5G52600.1 | 36.111 | 108 | 27 | 2 | 9 | 75 | 9 | 115 | 3.32e-12 | 59.3 |
| Msa0926030 | AT4G01680.2 | 32.283 | 127 | 34 | 2 | 1 | 75 | 1 | 127 | 5.53e-12 | 60.1 |
| Msa0926030 | AT5G06100.1 | 32.110 | 109 | 32 | 2 | 8 | 75 | 28 | 135 | 5.99e-12 | 60.1 |
| Msa0926030 | AT5G35550.1 | 31.858 | 113 | 34 | 3 | 9 | 80 | 11 | 121 | 6.14e-12 | 59.3 |
| Msa0926030 | AT5G06100.5 | 32.110 | 109 | 32 | 2 | 8 | 75 | 28 | 135 | 6.25e-12 | 60.1 |
| Msa0926030 | AT5G06100.2 | 32.110 | 109 | 32 | 2 | 8 | 75 | 28 | 135 | 6.25e-12 | 60.1 |
| Msa0926030 | AT5G06100.3 | 32.110 | 109 | 32 | 2 | 8 | 75 | 28 | 135 | 6.25e-12 | 60.1 |
| Msa0926030 | AT5G06100.4 | 32.110 | 109 | 32 | 2 | 8 | 75 | 28 | 135 | 6.25e-12 | 60.1 |
| Msa0926030 | AT1G66380.3 | 45.714 | 70 | 25 | 1 | 9 | 78 | 25 | 81 | 2.49e-11 | 55.5 |
| Msa0926030 | AT1G66380.1 | 32.407 | 108 | 31 | 2 | 12 | 78 | 8 | 114 | 3.39e-11 | 55.8 |
| Msa0926030 | AT5G07700.1 | 31.356 | 118 | 39 | 2 | 1 | 77 | 1 | 117 | 4.48e-11 | 57.4 |
| Msa0926030 | AT5G07700.2 | 31.356 | 118 | 39 | 2 | 1 | 77 | 1 | 117 | 4.48e-11 | 57.4 |
| Msa0926030 | AT1G79180.2 | 62.222 | 45 | 16 | 1 | 2 | 46 | 4 | 47 | 6.09e-11 | 57.0 |
Find 14 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACACTACATTCAAGAAAA+TGG | 0.276016 | 6_2:-69579383 | Msa0926030:CDS |
| TGGTAATTGTGCTGCTATAA+AGG | 0.287462 | 6_2:+69578329 | None:intergenic |
| AAAATGGCAATGCTGGTAAT+TGG | 0.287812 | 6_2:-69579367 | Msa0926030:CDS |
| ACGTCATTATCTGTTCTTCC+TGG | 0.361137 | 6_2:+69578309 | None:intergenic |
| ATTCAAGAAAATGGCAATGC+TGG | 0.460522 | 6_2:-69579374 | Msa0926030:CDS |
| GACAAATCAAAAGTGAAAAG+AGG | 0.524219 | 6_2:-69579437 | Msa0926030:CDS |
| ATCTCTCTTCCCCTAAAAGC+AGG | 0.549254 | 6_2:-69579344 | Msa0926030:intron |
| TTTATAGCAGCACAATTACC+AGG | 0.551768 | 6_2:-69578327 | Msa0926030:CDS |
| AGGCCTAATATCAAGCTTGG+AGG | 0.552249 | 6_2:-69578866 | Msa0926030:intron |
| AATAATTAAGGTCATGGGAA+GGG | 0.568392 | 6_2:-69579471 | None:intergenic |
| TATTTGCAGATGCCTACGAC+AGG | 0.582292 | 6_2:-69577899 | Msa0926030:intron |
| AAATAATTAAGGTCATGGGA+AGG | 0.599808 | 6_2:-69579472 | None:intergenic |
| CAAAAGTGAAAAGAGGTCCA+TGG | 0.611543 | 6_2:-69579430 | Msa0926030:CDS |
| TCATCTTCTTCATTAGACCA+TGG | 0.627345 | 6_2:+69579413 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTATTATGTTTAATTTG+TGG | - | chr6_2:69578387-69578406 | Msa0926030:intron | 10.0% |
| !!! | TTTTTATTATGTTTAATTTG+TGG | - | chr6_2:69578387-69578406 | Msa0926030:intron | 10.0% |
| !! | ATGAAAGATATATAAATCAA+GGG | + | chr6_2:69578041-69578060 | None:intergenic | 15.0% |
| !! | AATGAAAGATATATAAATCA+AGG | + | chr6_2:69578042-69578061 | None:intergenic | 15.0% |
| !!! | ATGTTTTTTTTTTCTTTCAA+TGG | - | chr6_2:69578222-69578241 | Msa0926030:intron | 15.0% |
| !!! | CATAATATTGATTTCAAATA+AGG | + | chr6_2:69578352-69578371 | None:intergenic | 15.0% |
| !!! | TAATTTGTGGTATTTTTTTT+AGG | - | chr6_2:69578400-69578419 | Msa0926030:intron | 15.0% |
| !!! | ATATTTATTTTTTTGTCATC+AGG | - | chr6_2:69578982-69579001 | Msa0926030:intron | 15.0% |
| !! | ATGAAAGATATATAAATCAA+GGG | + | chr6_2:69578041-69578060 | None:intergenic | 15.0% |
| !! | AATGAAAGATATATAAATCA+AGG | + | chr6_2:69578042-69578061 | None:intergenic | 15.0% |
| !!! | ATGTTTTTTTTTTCTTTCAA+TGG | - | chr6_2:69578222-69578241 | Msa0926030:intron | 15.0% |
| !!! | CATAATATTGATTTCAAATA+AGG | + | chr6_2:69578352-69578371 | None:intergenic | 15.0% |
| !!! | TAATTTGTGGTATTTTTTTT+AGG | - | chr6_2:69578400-69578419 | Msa0926030:intron | 15.0% |
| !!! | ATATTTATTTTTTTGTCATC+AGG | - | chr6_2:69578982-69579001 | Msa0926030:intron | 15.0% |
| !! | TGAAAGATATATAAATCAAG+GGG | + | chr6_2:69578040-69578059 | None:intergenic | 20.0% |
| !!! | ATCAAATCTAAAATCTAAGA+TGG | - | chr6_2:69578129-69578148 | Msa0926030:intron | 20.0% |
| !! | GAAACTTTCTATAAGAATTA+GGG | + | chr6_2:69578186-69578205 | None:intergenic | 20.0% |
| !! | TGAAACTTTCTATAAGAATT+AGG | + | chr6_2:69578187-69578206 | None:intergenic | 20.0% |
| !! | CTTATAGAAAGTTTCATTTA+AGG | - | chr6_2:69578191-69578210 | Msa0926030:intron | 20.0% |
| !! | AAAGAAACTATAGAAATGAA+AGG | + | chr6_2:69578561-69578580 | None:intergenic | 20.0% |
| !! | CAAAATCATACAATATAATG+AGG | - | chr6_2:69578612-69578631 | Msa0926030:intron | 20.0% |
| !! | CATACTTAACACAATAAATA+AGG | + | chr6_2:69578733-69578752 | None:intergenic | 20.0% |
| !!! | GTTTTTCTATTATTCAAGTT+TGG | + | chr6_2:69578855-69578874 | None:intergenic | 20.0% |
| !!! | TTATGTCTTTGACTAATTTT+AGG | + | chr6_2:69578885-69578904 | None:intergenic | 20.0% |
| !! | TGAAAGATATATAAATCAAG+GGG | + | chr6_2:69578040-69578059 | None:intergenic | 20.0% |
| !!! | ATCAAATCTAAAATCTAAGA+TGG | - | chr6_2:69578129-69578148 | Msa0926030:intron | 20.0% |
| !! | GAAACTTTCTATAAGAATTA+GGG | + | chr6_2:69578186-69578205 | None:intergenic | 20.0% |
| !! | TGAAACTTTCTATAAGAATT+AGG | + | chr6_2:69578187-69578206 | None:intergenic | 20.0% |
| !! | CTTATAGAAAGTTTCATTTA+AGG | - | chr6_2:69578191-69578210 | Msa0926030:intron | 20.0% |
| !! | AAAGAAACTATAGAAATGAA+AGG | + | chr6_2:69578561-69578580 | None:intergenic | 20.0% |
| !! | CAAAATCATACAATATAATG+AGG | - | chr6_2:69578612-69578631 | Msa0926030:intron | 20.0% |
| !! | CATACTTAACACAATAAATA+AGG | + | chr6_2:69578733-69578752 | None:intergenic | 20.0% |
| !!! | GTTTTTCTATTATTCAAGTT+TGG | + | chr6_2:69578855-69578874 | None:intergenic | 20.0% |
| !!! | TTATGTCTTTGACTAATTTT+AGG | + | chr6_2:69578885-69578904 | None:intergenic | 20.0% |
| ! | AAACACTACATTCAAGAAAA+TGG | - | chr6_2:69577955-69577974 | Msa0926030:intron | 25.0% |
| !! | CTAAAATCTAAGATGGTATA+TGG | - | chr6_2:69578136-69578155 | Msa0926030:intron | 25.0% |
| ! | ATAGAAAGTTTCATTTAAGG+AGG | - | chr6_2:69578194-69578213 | Msa0926030:intron | 25.0% |
| ! | TAAGATGGTTGAACTATTTA+AGG | - | chr6_2:69578452-69578471 | Msa0926030:intron | 25.0% |
| ! | AAAATGTGTATGCATACATA+TGG | + | chr6_2:69578587-69578606 | None:intergenic | 25.0% |
| ! | ACAATTGTGATTAGATACTA+CGG | + | chr6_2:69578821-69578840 | None:intergenic | 25.0% |
| !!! | TTTATTTTTTTGTCATCAGG+TGG | - | chr6_2:69578985-69579004 | Msa0926030:intron | 25.0% |
| ! | CCTCGAAAAAAGTTTAAAAA+GGG | + | chr6_2:69579267-69579286 | None:intergenic | 25.0% |
| ! | AAACACTACATTCAAGAAAA+TGG | - | chr6_2:69577955-69577974 | Msa0926030:intron | 25.0% |
| !! | CTAAAATCTAAGATGGTATA+TGG | - | chr6_2:69578136-69578155 | Msa0926030:intron | 25.0% |
| ! | ATAGAAAGTTTCATTTAAGG+AGG | - | chr6_2:69578194-69578213 | Msa0926030:intron | 25.0% |
| ! | TAAGATGGTTGAACTATTTA+AGG | - | chr6_2:69578452-69578471 | Msa0926030:intron | 25.0% |
| ! | AAAATGTGTATGCATACATA+TGG | + | chr6_2:69578587-69578606 | None:intergenic | 25.0% |
| ! | ACAATTGTGATTAGATACTA+CGG | + | chr6_2:69578821-69578840 | None:intergenic | 25.0% |
| !!! | TTTATTTTTTTGTCATCAGG+TGG | - | chr6_2:69578985-69579004 | Msa0926030:intron | 25.0% |
| ! | CCTCGAAAAAAGTTTAAAAA+GGG | + | chr6_2:69579267-69579286 | None:intergenic | 25.0% |
| !!! | ACTTTTGATTTGTCACAACA+TGG | + | chr6_2:69577895-69577914 | None:intergenic | 30.0% |
| GACAAATCAAAAGTGAAAAG+AGG | - | chr6_2:69577901-69577920 | Msa0926030:intron | 30.0% | |
| !! | TGAAAAATCACCTGCTTTTA+GGG | + | chr6_2:69578007-69578026 | None:intergenic | 30.0% |
| !! | ATGAAAAATCACCTGCTTTT+AGG | + | chr6_2:69578008-69578027 | None:intergenic | 30.0% |
| !!! | TTTTTAGGTCTAAATCGTTG+TGG | - | chr6_2:69578415-69578434 | Msa0926030:intron | 30.0% |
| !! | TTTTAGGTCTAAATCGTTGT+GGG | - | chr6_2:69578416-69578435 | Msa0926030:intron | 30.0% |
| ! | CAGATCACTCATAGTTTTTA+AGG | - | chr6_2:69578777-69578796 | Msa0926030:intron | 30.0% |
| TAAACAAAATTAGCCGAACT+CGG | - | chr6_2:69578902-69578921 | Msa0926030:intron | 30.0% | |
| ATAATGACGTGAAAAATCAC+TGG | - | chr6_2:69579042-69579061 | Msa0926030:intron | 30.0% | |
| ! | CTAAAGAAAAAGTATGTAGC+AGG | - | chr6_2:69579074-69579093 | Msa0926030:intron | 30.0% |
| !! | CCCTTTTTAAACTTTTTTCG+AGG | - | chr6_2:69579264-69579283 | Msa0926030:intron | 30.0% |
| GCCTCGAAAAAAGTTTAAAA+AGG | + | chr6_2:69579268-69579287 | None:intergenic | 30.0% | |
| GCATCTGCAAATAATTAAAG+TGG | + | chr6_2:69579432-69579451 | None:intergenic | 30.0% | |
| !!! | ACTTTTGATTTGTCACAACA+TGG | + | chr6_2:69577895-69577914 | None:intergenic | 30.0% |
| GACAAATCAAAAGTGAAAAG+AGG | - | chr6_2:69577901-69577920 | Msa0926030:intron | 30.0% | |
| !! | TGAAAAATCACCTGCTTTTA+GGG | + | chr6_2:69578007-69578026 | None:intergenic | 30.0% |
| !! | ATGAAAAATCACCTGCTTTT+AGG | + | chr6_2:69578008-69578027 | None:intergenic | 30.0% |
| !!! | TTTTTAGGTCTAAATCGTTG+TGG | - | chr6_2:69578415-69578434 | Msa0926030:intron | 30.0% |
| !! | TTTTAGGTCTAAATCGTTGT+GGG | - | chr6_2:69578416-69578435 | Msa0926030:intron | 30.0% |
| ! | CAGATCACTCATAGTTTTTA+AGG | - | chr6_2:69578777-69578796 | Msa0926030:intron | 30.0% |
| TAAACAAAATTAGCCGAACT+CGG | - | chr6_2:69578902-69578921 | Msa0926030:intron | 30.0% | |
| ATAATGACGTGAAAAATCAC+TGG | - | chr6_2:69579042-69579061 | Msa0926030:intron | 30.0% | |
| ! | CTAAAGAAAAAGTATGTAGC+AGG | - | chr6_2:69579074-69579093 | Msa0926030:intron | 30.0% |
| !! | CCCTTTTTAAACTTTTTTCG+AGG | - | chr6_2:69579264-69579283 | Msa0926030:intron | 30.0% |
| GCCTCGAAAAAAGTTTAAAA+AGG | + | chr6_2:69579268-69579287 | None:intergenic | 30.0% | |
| GCATCTGCAAATAATTAAAG+TGG | + | chr6_2:69579432-69579451 | None:intergenic | 30.0% | |
| TCATCTTCTTCATTAGACCA+TGG | + | chr6_2:69577928-69577947 | None:intergenic | 35.0% | |
| ATTCAAGAAAATGGCAATGC+TGG | - | chr6_2:69577964-69577983 | Msa0926030:intron | 35.0% | |
| AAAATGGCAATGCTGGTAAT+TGG | - | chr6_2:69577971-69577990 | Msa0926030:intron | 35.0% | |
| !! | GAAAAATCACCTGCTTTTAG+GGG | + | chr6_2:69578006-69578025 | None:intergenic | 35.0% |
| TTAAGGCCTAATATCAAGCT+TGG | - | chr6_2:69578469-69578488 | Msa0926030:intron | 35.0% | |
| AAACCTCCAAGCTTGATATT+AGG | + | chr6_2:69578478-69578497 | None:intergenic | 35.0% | |
| ! | TGGTAATTGTGCTGCTATAA+AGG | + | chr6_2:69579012-69579031 | None:intergenic | 35.0% |
| TTTATAGCAGCACAATTACC+AGG | - | chr6_2:69579011-69579030 | Msa0926030:intron | 35.0% | |
| AAAAATGTTCTTCCTGTCGT+AGG | + | chr6_2:69579454-69579473 | None:intergenic | 35.0% | |
| TCATCTTCTTCATTAGACCA+TGG | + | chr6_2:69577928-69577947 | None:intergenic | 35.0% | |
| ATTCAAGAAAATGGCAATGC+TGG | - | chr6_2:69577964-69577983 | Msa0926030:intron | 35.0% | |
| AAAATGGCAATGCTGGTAAT+TGG | - | chr6_2:69577971-69577990 | Msa0926030:intron | 35.0% | |
| !! | GAAAAATCACCTGCTTTTAG+GGG | + | chr6_2:69578006-69578025 | None:intergenic | 35.0% |
| TTAAGGCCTAATATCAAGCT+TGG | - | chr6_2:69578469-69578488 | Msa0926030:intron | 35.0% | |
| AAACCTCCAAGCTTGATATT+AGG | + | chr6_2:69578478-69578497 | None:intergenic | 35.0% | |
| ! | TGGTAATTGTGCTGCTATAA+AGG | + | chr6_2:69579012-69579031 | None:intergenic | 35.0% |
| TTTATAGCAGCACAATTACC+AGG | - | chr6_2:69579011-69579030 | Msa0926030:intron | 35.0% | |
| AAAAATGTTCTTCCTGTCGT+AGG | + | chr6_2:69579454-69579473 | None:intergenic | 35.0% | |
| CAAAAGTGAAAAGAGGTCCA+TGG | - | chr6_2:69577908-69577927 | Msa0926030:intron | 40.0% | |
| GATAATGTTGTCTTCCTCCT+TGG | + | chr6_2:69578503-69578522 | None:intergenic | 40.0% | |
| !! | TGCACTCTTTTTAGCACCAT+AGG | - | chr6_2:69578523-69578542 | Msa0926030:intron | 40.0% |
| !! | TTTTTAGCACCATAGGAAGC+AGG | - | chr6_2:69578530-69578549 | Msa0926030:intron | 40.0% |
| ACGTCATTATCTGTTCTTCC+TGG | + | chr6_2:69579032-69579051 | None:intergenic | 40.0% | |
| CAAAAGTGAAAAGAGGTCCA+TGG | - | chr6_2:69577908-69577927 | Msa0926030:intron | 40.0% | |
| GATAATGTTGTCTTCCTCCT+TGG | + | chr6_2:69578503-69578522 | None:intergenic | 40.0% | |
| !! | TGCACTCTTTTTAGCACCAT+AGG | - | chr6_2:69578523-69578542 | Msa0926030:intron | 40.0% |
| !! | TTTTTAGCACCATAGGAAGC+AGG | - | chr6_2:69578530-69578549 | Msa0926030:intron | 40.0% |
| ACGTCATTATCTGTTCTTCC+TGG | + | chr6_2:69579032-69579051 | None:intergenic | 40.0% | |
| ATCTCTCTTCCCCTAAAAGC+AGG | - | chr6_2:69577994-69578013 | Msa0926030:intron | 45.0% | |
| GGAAGAGTTGTCGTCTAAGA+TGG | - | chr6_2:69578437-69578456 | Msa0926030:intron | 45.0% | |
| AGGCCTAATATCAAGCTTGG+AGG | - | chr6_2:69578472-69578491 | Msa0926030:intron | 45.0% | |
| !! | CAAGATTTGAGCACCGAGTT+CGG | + | chr6_2:69578918-69578937 | None:intergenic | 45.0% |
| TATTTGCAGATGCCTACGAC+AGG | - | chr6_2:69579439-69579458 | Msa0926030:CDS | 45.0% | |
| ATCTCTCTTCCCCTAAAAGC+AGG | - | chr6_2:69577994-69578013 | Msa0926030:intron | 45.0% | |
| GGAAGAGTTGTCGTCTAAGA+TGG | - | chr6_2:69578437-69578456 | Msa0926030:intron | 45.0% | |
| AGGCCTAATATCAAGCTTGG+AGG | - | chr6_2:69578472-69578491 | Msa0926030:intron | 45.0% | |
| !! | CAAGATTTGAGCACCGAGTT+CGG | + | chr6_2:69578918-69578937 | None:intergenic | 45.0% |
| TATTTGCAGATGCCTACGAC+AGG | - | chr6_2:69579439-69579458 | Msa0926030:CDS | 45.0% | |
| CAAGCTTGGAGGTTTCACCA+AGG | - | chr6_2:69578483-69578502 | Msa0926030:intron | 50.0% | |
| AAGGACTTGCCTGCTTCCTA+TGG | + | chr6_2:69578542-69578561 | None:intergenic | 50.0% | |
| CAAGCTTGGAGGTTTCACCA+AGG | - | chr6_2:69578483-69578502 | Msa0926030:intron | 50.0% | |
| AAGGACTTGCCTGCTTCCTA+TGG | + | chr6_2:69578542-69578561 | None:intergenic | 50.0% | |
| GCTTGGAGGTTTCACCAAGG+AGG | - | chr6_2:69578486-69578505 | Msa0926030:intron | 55.0% | |
| GCTTGGAGGTTTCACCAAGG+AGG | - | chr6_2:69578486-69578505 | Msa0926030:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 69577880 | 69579480 | 69577880 | ID=Msa0926030;Name=Msa0926030 |
| chr6_2 | mRNA | 69577880 | 69579480 | 69577880 | ID=Msa0926030-mRNA-1;Parent=Msa0926030;Name=Msa0926030-mRNA-1;_AED=0.34;_eAED=0.36;_QI=0|0|0|0.75|0|0.25|4|0|86 |
| chr6_2 | exon | 69579345 | 69579480 | 69579345 | ID=Msa0926030-mRNA-1:exon:11245;Parent=Msa0926030-mRNA-1 |
| chr6_2 | exon | 69578867 | 69578873 | 69578867 | ID=Msa0926030-mRNA-1:exon:11244;Parent=Msa0926030-mRNA-1 |
| chr6_2 | exon | 69578272 | 69578356 | 69578272 | ID=Msa0926030-mRNA-1:exon:11243;Parent=Msa0926030-mRNA-1 |
| chr6_2 | exon | 69577880 | 69577912 | 69577880 | ID=Msa0926030-mRNA-1:exon:11242;Parent=Msa0926030-mRNA-1 |
| chr6_2 | CDS | 69579345 | 69579480 | 69579345 | ID=Msa0926030-mRNA-1:cds;Parent=Msa0926030-mRNA-1 |
| chr6_2 | CDS | 69578867 | 69578873 | 69578867 | ID=Msa0926030-mRNA-1:cds;Parent=Msa0926030-mRNA-1 |
| chr6_2 | CDS | 69578272 | 69578356 | 69578272 | ID=Msa0926030-mRNA-1:cds;Parent=Msa0926030-mRNA-1 |
| chr6_2 | CDS | 69577880 | 69577912 | 69577880 | ID=Msa0926030-mRNA-1:cds;Parent=Msa0926030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
