AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0927370

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0927370 MtrunA17_Chr6g0485431 89.197 361 39 0 58 418 1 361 0.0 660
Msa0927370 MtrunA17_Chr1g0189391 45.075 335 152 7 115 418 1 334 5.22e-80 250
Msa0927370 MtrunA17_Chr7g0249311 43.089 123 68 2 160 282 342 462 1.01e-23 103
Msa0927370 MtrunA17_Chr7g0249311 40.741 81 46 2 212 292 180 258 2.73e-13 71.6
Msa0927370 MtrunA17_Chr5g0418191 50.000 98 40 2 197 294 306 394 2.70e-23 101
Msa0927370 MtrunA17_Chr5g0418191 40.385 104 51 5 183 282 119 215 1.72e-13 72.0
Msa0927370 MtrunA17_Chr7g0263531 34.868 152 94 3 137 288 291 437 9.56e-23 99.8
Msa0927370 MtrunA17_Chr7g0263531 46.667 75 38 2 212 286 190 262 7.57e-14 72.8
Msa0927370 MtrunA17_Chr4g0042831 56.000 75 32 1 197 271 264 337 2.95e-22 97.8
Msa0927370 MtrunA17_Chr4g0042831 45.833 72 37 2 205 275 138 208 8.21e-13 69.7
Msa0927370 MtrunA17_Chr7g0218081 45.833 96 51 1 176 271 375 469 3.49e-22 98.6
Msa0927370 MtrunA17_Chr7g0218081 48.387 62 30 2 210 271 227 286 5.70e-12 67.4
Msa0927370 MtrunA17_Chr3g0129321 35.606 132 77 3 141 272 55 178 7.73e-22 92.8
Msa0927370 MtrunA17_Chr4g0051881 49.383 81 40 1 197 277 164 243 1.73e-21 94.7
Msa0927370 MtrunA17_Chr7g0249301 55.263 76 33 1 196 271 277 351 2.01e-21 95.1
Msa0927370 MtrunA17_Chr7g0249301 40.000 85 49 2 210 294 61 143 7.03e-13 69.7
Msa0927370 MtrunA17_Chr7g0270191 43.182 88 49 1 198 285 132 218 2.33e-21 93.6
Msa0927370 MtrunA17_Chr5g0445311 34.211 152 96 2 120 271 276 423 3.25e-21 95.9
Msa0927370 MtrunA17_Chr3g0101131 37.179 156 82 5 131 271 320 474 3.59e-21 95.9
Msa0927370 MtrunA17_Chr1g0194481 46.835 79 41 1 197 275 144 221 1.03e-20 92.4
Msa0927370 MtrunA17_Chr5g0443131 48.148 81 41 1 197 277 143 222 1.84e-20 91.3
Msa0927370 MtrunA17_Chr3g0079691 45.631 103 55 1 169 271 453 554 1.45e-19 91.3
Msa0927370 MtrunA17_Chr3g0079691 46.154 65 33 2 212 276 281 343 9.66e-12 67.0
Msa0927370 MtrunA17_Chr4g0004911 52.632 76 35 1 197 272 322 396 2.13e-19 90.1
Msa0927370 MtrunA17_Chr4g0004911 44.615 65 35 1 212 276 185 248 4.56e-13 70.9
Msa0927370 MtrunA17_Chr2g0294231 44.444 81 44 1 197 277 189 268 2.91e-19 89.0
Msa0927370 MtrunA17_Chr3g0129361 48.611 72 36 1 197 268 130 200 3.69e-19 85.9
Msa0927370 MtrunA17_Chr8g0383351 47.945 73 36 2 197 268 145 216 6.96e-19 85.5
Msa0927370 MtrunA17_Chr5g0418781 48.718 78 36 2 197 271 110 186 7.88e-19 86.3
Msa0927370 MtrunA17_Chr4g0068541 44.872 78 42 1 198 275 195 271 1.14e-18 87.4
Msa0927370 MtrunA17_Chr7g0248721 50.685 73 34 2 196 268 126 196 1.66e-18 84.0
Msa0927370 MtrunA17_Chr8g0383251 46.753 77 40 1 198 274 95 170 3.13e-18 82.0
Msa0927370 MtrunA17_Chr7g0243891 53.333 75 34 1 197 271 360 433 3.41e-18 86.7
Msa0927370 MtrunA17_Chr7g0243891 38.750 80 47 2 207 286 212 289 1.08e-11 66.6
Msa0927370 MtrunA17_Chr5g0447701 35.714 126 80 1 146 271 187 311 3.54e-18 85.9
Msa0927370 MtrunA17_Chr5g0432161 48.193 83 42 1 189 271 399 480 3.83e-18 86.7
Msa0927370 MtrunA17_Chr5g0432161 43.750 80 43 2 209 288 242 319 8.67e-11 63.9
Msa0927370 MtrunA17_Chr3g0106491 52.000 75 35 1 197 271 351 424 6.97e-18 85.5
Msa0927370 MtrunA17_Chr3g0106491 42.105 76 42 2 202 277 189 262 3.64e-12 68.2
Msa0927370 MtrunA17_Chr8g0335811 47.222 72 37 1 197 268 140 210 1.49e-17 81.3
Msa0927370 MtrunA17_Chr7g0224801 50.000 68 33 1 201 268 83 149 2.55e-17 79.3
Msa0927370 MtrunA17_Chr1g0150801 47.297 74 38 1 195 268 86 158 4.23e-17 78.6
Msa0927370 MtrunA17_Chr1g0188941 46.667 75 39 1 197 271 37 110 5.05e-17 76.6
Msa0927370 MtrunA17_Chr8g0386241 46.479 71 37 1 198 268 90 159 6.59e-16 75.5
Msa0927370 MtrunA17_Chr3g0099641 40.517 116 55 5 191 305 232 334 7.95e-16 79.3
Msa0927370 MtrunA17_Chr4g0074001 44.444 81 44 1 197 277 345 424 2.13e-15 78.2
Msa0927370 MtrunA17_Chr7g0238921 34.921 126 72 3 144 268 64 180 2.47e-15 76.6
Msa0927370 MtrunA17_Chr4g0060271 46.053 76 39 2 198 272 242 316 7.55e-15 76.6
Msa0927370 MtrunA17_Chr2g0293481 38.776 98 51 3 196 285 252 348 9.04e-15 75.9
Msa0927370 MtrunA17_Chr2g0284321 51.613 62 28 2 211 271 35 95 1.16e-14 72.8
Msa0927370 MtrunA17_Chr8g0379461 49.206 63 30 2 211 272 76 137 1.25e-14 73.2
Msa0927370 MtrunA17_Chr7g0216891 30.846 201 108 7 106 289 105 291 1.48e-14 75.5
Msa0927370 MtrunA17_Chr8g0348311 47.561 82 38 4 204 283 147 225 1.51e-14 74.3
Msa0927370 MtrunA17_Chr7g0270831 46.667 75 38 2 198 271 203 276 1.62e-14 75.1
Msa0927370 MtrunA17_Chr5g0401821 34.821 112 60 3 167 277 166 265 2.02e-14 73.2
Msa0927370 MtrunA17_Chr1g0147881 55.172 58 24 2 212 268 263 319 2.77e-14 73.6
Msa0927370 MtrunA17_Chr7g0270051 46.250 80 35 3 199 271 35 113 3.51e-14 72.4
Msa0927370 MtrunA17_Chr2g0319961 50.794 63 29 2 211 272 80 141 4.10e-14 72.0
Msa0927370 MtrunA17_Chr2g0322391 46.667 75 38 2 198 271 336 409 4.98e-14 73.9
Msa0927370 MtrunA17_Chr2g0288871 45.333 75 39 2 198 271 292 365 5.41e-14 73.9
Msa0927370 MtrunA17_Chr7g0248691 50.000 78 35 3 207 283 150 224 6.45e-14 72.4
Msa0927370 MtrunA17_Chr4g0071521 47.059 68 34 2 208 274 242 308 7.88e-14 72.0
Msa0927370 MtrunA17_Chr3g0139021 39.806 103 49 3 167 268 281 371 1.45e-13 72.0
Msa0927370 MtrunA17_Chr1g0150281 39.773 88 47 4 187 269 112 198 1.84e-13 70.5
Msa0927370 MtrunA17_Chr4g0051181 45.000 80 42 2 194 272 226 304 2.32e-13 71.6
Msa0927370 MtrunA17_Chr8g0387501 39.583 96 48 4 212 306 130 216 2.58e-13 69.7
Msa0927370 MtrunA17_Chr2g0302391 46.154 78 40 2 212 288 212 288 3.42e-13 70.9
Msa0927370 MtrunA17_Chr2g0333851 35.789 95 57 3 198 289 154 247 3.65e-13 70.1
Msa0927370 MtrunA17_Chr4g0053281 35.714 98 50 3 174 270 240 325 4.45e-13 70.1
Msa0927370 MtrunA17_Chr4g0025061 42.500 80 44 2 198 276 347 425 6.13e-13 70.5
Msa0927370 MtrunA17_Chr8g0387981 43.750 80 36 3 195 266 111 189 1.17e-12 68.9
Msa0927370 MtrunA17_Chr7g0228941 51.724 58 26 2 212 268 53 109 2.06e-12 63.9
Msa0927370 MtrunA17_Chr1g0184691 50.847 59 27 2 212 269 294 351 2.10e-12 68.2
Msa0927370 MtrunA17_Chr1g0202461 47.945 73 34 3 212 283 262 331 6.77e-12 66.6
Msa0927370 MtrunA17_Chr1g0150271 33.684 95 59 3 180 271 68 161 1.16e-11 64.7
Msa0927370 MtrunA17_Chr5g0447711 37.037 81 50 1 191 271 210 289 9.44e-11 62.8
Msa0927370 MtrunA17_Chr2g0289181 42.466 73 39 3 205 275 7 78 9.54e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0927370 AT5G41570.1 53.425 73 33 1 196 268 83 154 2.90e-22 93.6
Msa0927370 AT1G29860.1 56.757 74 31 1 198 271 123 195 3.05e-22 96.3
Msa0927370 AT4G18170.1 56.000 75 32 1 197 271 158 231 3.07e-22 97.1
Msa0927370 AT1G13960.1 45.361 97 52 1 175 271 373 468 3.36e-22 99.0
Msa0927370 AT1G13960.1 46.575 73 36 3 205 276 222 292 7.42e-13 70.5
Msa0927370 AT1G13960.2 54.667 75 33 1 197 271 242 315 4.55e-22 97.1
Msa0927370 AT1G13960.2 46.575 73 36 3 205 276 69 139 1.95e-12 68.6
Msa0927370 AT2G03340.1 54.667 75 33 1 197 271 401 474 8.60e-22 97.8
Msa0927370 AT2G03340.1 47.761 67 32 3 206 271 244 308 2.87e-12 68.9
Msa0927370 AT1G64000.1 53.521 71 32 1 198 268 101 170 9.85e-22 92.8
Msa0927370 AT5G46350.1 54.667 75 33 1 197 271 169 242 1.02e-21 95.5
Msa0927370 AT5G56270.1 38.194 144 85 3 128 271 407 546 2.57e-20 94.0
Msa0927370 AT5G56270.1 50.877 57 26 2 212 268 274 328 3.41e-11 65.9
Msa0927370 AT2G47260.1 47.436 78 40 1 198 275 161 237 2.67e-20 91.7
Msa0927370 AT1G69310.4 46.591 88 40 3 197 278 133 219 3.64e-20 90.5
Msa0927370 AT1G69310.2 46.591 88 40 3 197 278 133 219 3.64e-20 90.5
Msa0927370 AT1G69310.1 46.591 88 40 3 197 278 133 219 3.64e-20 90.5
Msa0927370 AT5G49520.1 47.436 78 40 1 198 275 208 284 3.95e-20 92.0
Msa0927370 AT3G01080.2 53.333 75 34 1 197 271 330 403 4.44e-20 92.4
Msa0927370 AT3G01080.2 48.387 62 30 2 210 271 204 263 8.69e-11 63.9
Msa0927370 AT3G01080.1 53.333 75 34 1 197 271 292 365 5.21e-20 92.0
Msa0927370 AT3G01080.1 48.387 62 30 2 210 271 166 225 9.98e-11 63.5
Msa0927370 AT2G46130.1 51.389 72 34 1 197 268 16 86 1.35e-19 84.0
Msa0927370 AT5G07100.2 54.667 75 33 1 197 271 127 200 1.68e-19 87.0
Msa0927370 AT5G07100.4 54.667 75 33 1 197 271 127 200 1.68e-19 87.0
Msa0927370 AT5G07100.5 54.667 75 33 1 197 271 127 200 1.68e-19 87.0
Msa0927370 AT5G07100.3 54.667 75 33 1 197 271 127 200 1.68e-19 87.0
Msa0927370 AT5G07100.1 54.667 75 33 1 197 271 220 293 1.72e-19 89.0
Msa0927370 AT5G07100.1 33.636 110 64 4 188 294 91 194 4.21e-11 64.3
Msa0927370 AT1G55600.1 50.000 74 36 1 198 271 294 366 4.69e-19 89.4
Msa0927370 AT5G64810.1 32.847 137 84 2 132 268 38 166 5.80e-19 85.1
Msa0927370 AT4G26640.7 52.000 75 35 1 197 271 327 400 1.04e-18 88.6
Msa0927370 AT4G26640.2 51.316 76 36 1 197 272 367 441 1.17e-18 88.6
Msa0927370 AT4G26640.1 51.316 76 36 1 197 272 295 369 1.21e-18 88.2
Msa0927370 AT4G26640.5 51.316 76 36 1 197 272 191 265 1.22e-18 87.4
Msa0927370 AT4G26640.6 51.316 76 36 1 197 272 191 265 1.22e-18 87.4
Msa0927370 AT4G26640.4 51.316 76 36 1 197 272 191 265 1.22e-18 87.4
Msa0927370 AT4G26640.3 51.316 76 36 1 197 272 191 265 1.22e-18 87.4
Msa0927370 AT2G04880.2 50.000 74 36 1 198 271 270 342 1.60e-18 87.8
Msa0927370 AT2G04880.2 40.217 92 51 3 205 294 105 194 3.68e-11 65.1
Msa0927370 AT2G04880.1 50.000 74 36 1 198 271 294 366 1.85e-18 87.8
Msa0927370 AT2G04880.1 39.216 102 56 4 205 302 105 204 4.96e-11 64.7
Msa0927370 AT2G21900.1 44.156 77 39 2 200 273 95 170 1.86e-18 83.6
Msa0927370 AT2G38470.1 52.000 75 35 1 197 271 348 421 2.02e-18 87.8
Msa0927370 AT4G39410.1 50.000 72 35 1 197 268 209 279 2.86e-18 85.5
Msa0927370 AT2G37260.3 52.174 69 32 1 200 268 258 325 2.86e-18 85.9
Msa0927370 AT2G37260.3 36.220 127 56 5 212 338 86 187 2.55e-12 68.2
Msa0927370 AT2G37260.2 52.174 69 32 1 200 268 256 323 2.91e-18 85.9
Msa0927370 AT2G37260.2 36.220 127 56 5 212 338 84 185 2.73e-12 68.2
Msa0927370 AT5G26170.1 45.070 71 38 1 198 268 100 169 3.02e-18 82.4
Msa0927370 AT2G37260.1 54.688 64 28 1 205 268 343 405 3.69e-18 86.7
Msa0927370 AT2G37260.1 36.220 127 56 5 212 338 166 267 2.87e-12 68.6
Msa0927370 AT2G30250.1 45.679 81 43 1 197 277 314 393 4.23e-18 85.9
Msa0927370 AT2G44745.1 47.222 72 37 1 197 268 131 201 6.07e-18 82.8
Msa0927370 AT3G62340.1 46.154 78 41 1 196 273 103 179 6.52e-18 84.0
Msa0927370 AT4G30935.1 48.718 78 39 1 212 289 332 408 1.83e-17 84.7
Msa0927370 AT5G13080.1 47.887 71 36 1 198 268 54 123 9.86e-17 77.4
Msa0927370 AT4G26440.1 40.404 99 58 1 173 271 334 431 1.23e-16 82.4
Msa0927370 AT4G23550.1 38.655 119 61 5 194 304 124 238 2.54e-16 79.7
Msa0927370 AT4G01250.1 42.991 107 47 5 211 304 128 233 6.06e-16 78.6
Msa0927370 AT1G69310.3 43.182 88 39 4 197 278 133 215 1.48e-15 77.0
Msa0927370 AT1G29280.1 49.231 65 31 2 211 274 74 137 1.93e-15 76.3
Msa0927370 AT2G46130.2 47.222 72 33 2 197 268 16 82 5.32e-15 71.2
Msa0927370 AT3G01970.1 41.667 72 41 1 198 269 52 122 1.29e-14 71.2
Msa0927370 AT1G30650.1 49.206 63 30 2 211 272 217 278 2.47e-14 74.7
Msa0927370 AT2G34830.1 48.529 68 31 3 211 277 215 279 2.79e-14 74.7
Msa0927370 AT2G34830.2 48.529 68 31 3 211 277 224 288 2.86e-14 74.7
Msa0927370 AT1G62300.1 48.000 75 37 2 198 271 299 372 3.34e-14 74.7
Msa0927370 AT1G68150.1 41.304 92 52 2 194 284 218 308 4.40e-14 73.6
Msa0927370 AT3G58710.1 40.385 104 57 4 211 311 71 172 4.48e-14 72.4
Msa0927370 AT3G58710.2 40.385 104 57 4 211 311 70 171 4.68e-14 72.4
Msa0927370 AT5G15130.2 46.053 76 39 2 198 272 172 246 5.06e-14 74.3
Msa0927370 AT4G04450.2 46.667 75 38 2 198 271 185 258 5.44e-14 73.9
Msa0927370 AT5G15130.1 46.053 76 39 2 198 272 214 288 5.87e-14 73.9
Msa0927370 AT2G25000.2 46.032 63 32 2 210 271 102 163 6.11e-14 71.2
Msa0927370 AT2G25000.4 46.032 63 32 2 210 271 102 163 6.11e-14 71.2
Msa0927370 AT2G25000.3 46.032 63 32 2 210 271 124 185 9.43e-14 71.2
Msa0927370 AT4G31550.2 39.216 102 49 3 168 268 213 302 1.43e-13 71.6
Msa0927370 AT2G25000.1 46.032 63 32 2 210 271 145 206 1.43e-13 70.9
Msa0927370 AT2G30590.1 34.000 150 81 6 136 268 222 370 1.46e-13 72.0
Msa0927370 AT4G04450.1 46.667 75 38 2 198 271 279 352 1.56e-13 72.8
Msa0927370 AT4G22070.4 46.667 75 38 2 198 271 284 357 1.79e-13 72.4
Msa0927370 AT4G22070.3 46.667 75 38 2 198 271 284 357 1.79e-13 72.4
Msa0927370 AT4G22070.2 46.667 75 38 2 198 271 284 357 1.79e-13 72.4
Msa0927370 AT4G22070.1 46.667 75 38 2 198 271 284 357 1.79e-13 72.4
Msa0927370 AT2G23320.1 40.541 111 42 5 169 270 204 299 2.18e-13 71.2
Msa0927370 AT4G31550.1 53.448 58 25 2 212 268 247 303 3.76e-13 70.5
Msa0927370 AT1G18860.1 43.529 85 45 3 188 271 217 299 5.19e-13 71.2
Msa0927370 AT5G52830.1 42.308 104 49 4 207 309 161 254 6.06e-13 70.1
Msa0927370 AT5G43290.1 40.476 84 48 2 211 293 114 196 7.76e-13 68.9
Msa0927370 AT4G24240.1 36.697 109 62 4 172 274 237 344 8.37e-13 69.7
Msa0927370 AT4G31800.2 40.000 80 44 3 210 286 110 188 1.02e-12 68.2
Msa0927370 AT5G28650.1 38.235 102 50 3 168 268 230 319 1.36e-12 68.9
Msa0927370 AT4G31800.1 44.444 63 33 2 210 271 175 236 1.47e-12 68.6
Msa0927370 AT4G11070.2 31.250 144 79 6 183 308 76 217 3.14e-12 67.0
Msa0927370 AT4G11070.1 31.250 144 79 6 183 308 108 249 4.69e-12 67.0
Msa0927370 AT2G24570.1 51.724 58 26 2 212 268 244 300 6.93e-12 66.6
Msa0927370 AT3G04670.1 38.235 102 50 3 168 268 230 319 6.99e-12 66.6
Msa0927370 AT1G80840.1 41.270 63 35 2 210 271 145 206 9.18e-12 66.2
Msa0927370 AT5G45050.1 46.875 64 32 2 211 273 1180 1242 1.13e-11 67.4
Msa0927370 AT5G45050.4 46.875 64 32 2 211 273 1041 1103 1.15e-11 67.4
Msa0927370 AT5G45050.2 46.875 64 32 2 211 273 1152 1214 1.21e-11 67.4
Msa0927370 AT5G24110.1 47.541 61 28 2 210 267 112 171 1.99e-11 65.1

Find 89 sgRNAs with CRISPR-Local

Find 219 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTAACTTGTTGTTCATCTA+AGG 0.247246 6_2:+71688792 None:intergenic
GGGAAGGAAATATTTGAAAT+TGG 0.258518 6_2:+71688988 None:intergenic
CATCAGCTGCAACAACTTCT+TGG 0.283729 6_2:+71688830 None:intergenic
TATGAAACAATTACATATTT+CGG 0.286298 6_2:+71687691 None:intergenic
ATGCCTTATGGATATATTAA+TGG 0.289062 6_2:-71687430 Msa0927370:CDS
TATTTGAAATCCACCAATAC+TGG 0.290258 6_2:+71687351 None:intergenic
TTCAAGAAAGGATTATTATT+AGG 0.304221 6_2:+71687475 None:intergenic
TCAATTCTGAACACTACTTT+TGG 0.317569 6_2:+71688518 None:intergenic
CGAAGAAAATCATGAAGTTC+TGG 0.347870 6_2:+71687316 None:intergenic
AATACCATGATGATGCCTTA+TGG 0.355278 6_2:-71687442 Msa0927370:CDS
GGAAACCAAGTACTAAATTC+TGG 0.369352 6_2:-71690885 Msa0927370:CDS
TCTGAAAGTTATGAATCTTA+TGG 0.371782 6_2:-71687514 Msa0927370:CDS
GGTTATCGTTGGCATAAGTA+TGG 0.380213 6_2:-71688470 Msa0927370:CDS
CCTAAATATCATTCATTACT+AGG 0.380869 6_2:+71687211 None:intergenic
TCGTTGGCTTCATGATTAAT+TGG 0.383142 6_2:+71687238 None:intergenic
AGTGTAGTACTTGACTTTGT+TGG 0.385433 6_2:+71687622 None:intergenic
GAGTTGATTGCTCGGCAATA+AGG 0.389254 6_2:-71690863 Msa0927370:CDS
TATGTAATTGTTTCATATGA+AGG 0.393620 6_2:-71687685 Msa0927370:CDS
ATCCATTAGGCTGTTGTTGA+TGG 0.395630 6_2:-71689063 Msa0927370:intron
CAAGTTACAAATACAACTAT+TGG 0.398555 6_2:-71688778 Msa0927370:CDS
TCCTTCTCCTGATTATTCTC+AGG 0.404938 6_2:-71690802 Msa0927370:intron
AAGCAACATCATTCCTTCAA+TGG 0.416911 6_2:+71688741 None:intergenic
CAACTCCAGAATTTAGTACT+TGG 0.423817 6_2:+71690880 None:intergenic
TTGGATGTTGAACTTCATCT+TGG 0.424960 6_2:+71689007 None:intergenic
GATGGTTTCCACATGGCAAC+GGG 0.430688 6_2:-71689045 Msa0927370:CDS
TGTGAGAAAACAGGTGGAAA+GGG 0.431043 6_2:-71687725 Msa0927370:CDS
GCATCTTCACGATAATTCAT+TGG 0.435145 6_2:+71688859 None:intergenic
CAAGCTGTTCCCAGTATTGG+TGG 0.453491 6_2:-71687361 Msa0927370:CDS
ATCAGCTGCAACAACTTCTT+GGG 0.455443 6_2:+71688831 None:intergenic
TCTCAAGCTGTTCCCAGTAT+TGG 0.455665 6_2:-71687364 Msa0927370:CDS
ATATATACCTGAGAATAATC+AGG 0.463404 6_2:+71690795 None:intergenic
GGTGAGGAGGTGTGAAAGGT+TGG 0.471015 6_2:+71687539 None:intergenic
GGTGTGAAAGGTTGGGTCAT+AGG 0.474536 6_2:+71687547 None:intergenic
TTATTGACCATGTTCAAGAA+AGG 0.487320 6_2:+71687463 None:intergenic
ATTGGTGCAGCACCTTCAAA+AGG 0.488078 6_2:+71687256 None:intergenic
GTCCTTGATCAAGTGTTGTT+GGG 0.488952 6_2:+71688968 None:intergenic
GCTTGAGAGGCAGCAATTGA+AGG 0.494366 6_2:+71687379 None:intergenic
CTTATGGTAAGAACTGTACT+TGG 0.502973 6_2:-71687498 Msa0927370:CDS
GTTGTTGTTGTCGTCGTCCA+TGG 0.504429 6_2:+71690920 None:intergenic
GTACTTGATCGATTTAAATG+AGG 0.506847 6_2:-71690829 Msa0927370:CDS
TTCCCAACAACACTTGATCA+AGG 0.508819 6_2:-71688970 Msa0927370:CDS
GTTGAAGCAAGTTCCATTGA+AGG 0.510335 6_2:-71688754 Msa0927370:CDS
GCTAAACGCTGAAATTCTAA+AGG 0.517982 6_2:-71688899 Msa0927370:CDS
CATAATGATACTAGTGCTAG+TGG 0.520978 6_2:-71688715 Msa0927370:CDS
AACCTGTAATGTGAGAAAAC+AGG 0.528589 6_2:-71687734 Msa0927370:CDS
AATGAAGACAAAGTGAATGA+TGG 0.529985 6_2:-71688491 Msa0927370:CDS
TTGATCAAGTGTTGTTGGGA+AGG 0.530594 6_2:+71688972 None:intergenic
GTGAGGAGGTGTGAAAGGTT+GGG 0.531143 6_2:+71687540 None:intergenic
CACCTATATGTCTCATACCA+TGG 0.531735 6_2:-71690937 None:intergenic
ATGTGAGAAAACAGGTGGAA+AGG 0.535021 6_2:-71687726 Msa0927370:CDS
TAATAATCCTTTCTTGAACA+TGG 0.535267 6_2:-71687470 Msa0927370:CDS
AAATCATGAAGTTCTGGTAG+TGG 0.536148 6_2:+71687322 None:intergenic
TGATGGTTTCCACATGGCAA+CGG 0.539953 6_2:-71689046 Msa0927370:CDS
TGTCCATTAATATATCCATA+AGG 0.552023 6_2:+71687427 None:intergenic
TGTCCTTGATCAAGTGTTGT+TGG 0.552454 6_2:+71688967 None:intergenic
AATACTGGGAACAGCTTGAG+AGG 0.558169 6_2:+71687366 None:intergenic
TCATGAAGTTCTGGTAGTGG+TGG 0.567685 6_2:+71687325 None:intergenic
GAGCGGTGAGGAGGTGTGAA+AGG 0.568345 6_2:+71687535 None:intergenic
TTCATTACTAGGACTGTCGT+TGG 0.572830 6_2:+71687222 None:intergenic
TGGGTCATAGGCAATGCAAA+AGG 0.578767 6_2:+71687559 None:intergenic
AAGGAAATGCTAAATACCCT+AGG 0.580382 6_2:-71688433 Msa0927370:intron
TTCCACATGGCAACGGGAGT+AGG 0.582895 6_2:-71689039 Msa0927370:CDS
ATTTGAAATCCACCAATACT+GGG 0.584480 6_2:+71687352 None:intergenic
GCAACATTTATCATGGTGCA+AGG 0.584736 6_2:+71688542 None:intergenic
AAATTCTGGAGTTGATTGCT+CGG 0.585351 6_2:-71690871 Msa0927370:CDS
GAAATTCTAAAGGCTAGGAA+AGG 0.587867 6_2:-71688889 Msa0927370:CDS
ACCTGAGAATAATCAGGAGA+AGG 0.589877 6_2:+71690801 None:intergenic
ACGCTGAAATTCTAAAGGCT+AGG 0.591343 6_2:-71688894 Msa0927370:CDS
TAATTGCATTACTTTGCACA+TGG 0.597072 6_2:+71688923 None:intergenic
TTGATTGCTCGGCAATAAGG+AGG 0.597125 6_2:-71690860 Msa0927370:CDS
TATGGACGCAAGGAGATCAA+AGG 0.600725 6_2:-71688452 Msa0927370:CDS
TGCATTATAGGGGATACTAC+AGG 0.601431 6_2:-71687768 Msa0927370:intron
CACCTACTCCCGTTGCCATG+TGG 0.612280 6_2:+71689037 None:intergenic
GCTGCAACAACTTCTTGGGT+AGG 0.614907 6_2:+71688835 None:intergenic
TTGGCATAAGTATGGACGCA+AGG 0.617304 6_2:-71688462 Msa0927370:CDS
CTAGTGGATCTTCTTCACAA+AGG 0.623228 6_2:-71688699 Msa0927370:intron
TAACTTTCAGAGCGGTGAGG+AGG 0.625278 6_2:+71687526 None:intergenic
TATGAAGGCAAACATAATCA+CGG 0.626212 6_2:-71687670 Msa0927370:CDS
AAGTGAATGATGGTTATCGT+TGG 0.626452 6_2:-71688481 Msa0927370:CDS
GTCATAGGCAATGCAAAAGG+TGG 0.645286 6_2:+71687562 None:intergenic
CTGTAATGTGAGAAAACAGG+TGG 0.647364 6_2:-71687731 Msa0927370:CDS
TGATTGCTCGGCAATAAGGA+GGG 0.648861 6_2:-71690859 Msa0927370:CDS
CAACATTTATCATGGTGCAA+GGG 0.652471 6_2:+71688543 None:intergenic
ATATCCATAAGGCATCATCA+TGG 0.655849 6_2:+71687438 None:intergenic
TGTTGTTGATGGTTTCCACA+TGG 0.683427 6_2:-71689052 Msa0927370:CDS
ACAACACTTGATCAAGGACA+TGG 0.685805 6_2:-71688964 Msa0927370:CDS
TCATAACTTTCAGAGCGGTG+AGG 0.687777 6_2:+71687523 None:intergenic
AAGATTCATAACTTTCAGAG+CGG 0.728852 6_2:+71687518 None:intergenic
CACTGACAACAGTAGCACGT+AGG 0.750828 6_2:-71687603 Msa0927370:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATAATTAAATAATAAATTT+TGG + chr6_2:71690207-71690226 None:intergenic 0.0%
!! TATTATTATATAATACATGT+TGG + chr6_2:71687700-71687719 None:intergenic 10.0%
!!! ATATAAATTTTACTTTTCAA+GGG + chr6_2:71687810-71687829 None:intergenic 10.0%
!!! AATATAAATTTTACTTTTCA+AGG + chr6_2:71687811-71687830 None:intergenic 10.0%
!!! GTTGTTTTATATTTTATAAT+AGG - chr6_2:71688099-71688118 Msa0927370:intron 10.0%
!!! TATTATATTTGCTATATTAT+TGG + chr6_2:71688651-71688670 None:intergenic 10.0%
!! TAATTTGATATTAAATTTGT+GGG - chr6_2:71690141-71690160 Msa0927370:intron 10.0%
!!! AAATTTGGATTAGTTTATAA+TGG + chr6_2:71687513-71687532 None:intergenic 15.0%
!! AATTTCCTATTGAAAAATAA+TGG + chr6_2:71687592-71687611 None:intergenic 15.0%
!! AAATATTTAAACATGACAAA+CGG - chr6_2:71687648-71687667 Msa0927370:CDS 15.0%
!! AGTGCATATTTAATTATTAA+GGG + chr6_2:71687870-71687889 None:intergenic 15.0%
!! TAGTGCATATTTAATTATTA+AGG + chr6_2:71687871-71687890 None:intergenic 15.0%
!!! AATTAATTTTTCTTAAGTGA+TGG + chr6_2:71687935-71687954 None:intergenic 15.0%
!!! ACATATTTCAATTTTGTTTT+GGG - chr6_2:71688077-71688096 Msa0927370:intron 15.0%
!!! AGTGTATATTTTAACATAAA+AGG - chr6_2:71688392-71688411 Msa0927370:intron 15.0%
!!! GTGTATATTTTAACATAAAA+GGG - chr6_2:71688393-71688412 Msa0927370:intron 15.0%
!!! TGTATATTTTAACATAAAAG+GGG - chr6_2:71688394-71688413 Msa0927370:intron 15.0%
!!! TAAAAATGTTACATTGTTTT+TGG + chr6_2:71688793-71688812 None:intergenic 15.0%
!!! AAACAATGTAACATTTTTAT+AGG - chr6_2:71688794-71688813 Msa0927370:CDS 15.0%
!! TTTATAGGTAAATTTATTGA+AGG - chr6_2:71688809-71688828 Msa0927370:CDS 15.0%
!! TTATAGGTAAATTTATTGAA+GGG - chr6_2:71688810-71688829 Msa0927370:CDS 15.0%
!! TAGTATAAATTATAGTTTCA+TGG - chr6_2:71688882-71688901 Msa0927370:CDS 15.0%
!! AGTATAAATTATAGTTTCAT+GGG - chr6_2:71688883-71688902 Msa0927370:CDS 15.0%
!! TAAAAAAAATCATTTGATGA+TGG + chr6_2:71688938-71688957 None:intergenic 15.0%
!! TATTTGTTTCAAACAAAAAA+TGG - chr6_2:71689502-71689521 Msa0927370:intron 15.0%
!! AAACTTCTAATTATAAAGAA+CGG + chr6_2:71689913-71689932 None:intergenic 15.0%
!! GTAATTTGATATTAAATTTG+TGG - chr6_2:71690140-71690159 Msa0927370:intron 15.0%
!! AATTTGATATTAAATTTGTG+GGG - chr6_2:71690142-71690161 Msa0927370:intron 15.0%
!! ATTAATATTGTATGCATTAT+AGG - chr6_2:71690369-71690388 Msa0927370:intron 15.0%
!! TTAATATTGTATGCATTATA+GGG - chr6_2:71690370-71690389 Msa0927370:intron 15.0%
!! TATGAAACAATTACATATTT+CGG + chr6_2:71690461-71690480 None:intergenic 15.0%
!!! GATTTTTTTTTGTTATGATA+GGG + chr6_2:71690508-71690527 None:intergenic 15.0%
!!! TGTATATTTTAACATAAGAG+GGG + chr6_2:71688291-71688310 None:intergenic 20.0%
!!! GTGTATATTTTAACATAAGA+GGG + chr6_2:71688290-71688309 None:intergenic 20.0%
!!! AGTGTATATTTTAACATAAG+AGG + chr6_2:71688289-71688308 None:intergenic 20.0%
!! ATATTTAATTATTAAGGGAG+GGG + chr6_2:71687865-71687884 None:intergenic 20.0%
!! CATATTTAATTATTAAGGGA+GGG + chr6_2:71687866-71687885 None:intergenic 20.0%
!!! CACATATTTCAATTTTGTTT+TGG - chr6_2:71688076-71688095 Msa0927370:intron 20.0%
!!! AGTGTATATTTTAACATAAG+AGG - chr6_2:71688289-71688308 Msa0927370:intron 20.0%
!!! GTGTATATTTTAACATAAGA+GGG - chr6_2:71688290-71688309 Msa0927370:intron 20.0%
!!! TGTATATTTTAACATAAGAG+GGG - chr6_2:71688291-71688310 Msa0927370:intron 20.0%
!!! TCTAATATGTTTTGAATAAG+AGG - chr6_2:71688362-71688381 Msa0927370:intron 20.0%
!!! CTAATATGTTTTGAATAAGA+GGG - chr6_2:71688363-71688382 Msa0927370:intron 20.0%
!!! TAATATGTTTTGAATAAGAG+GGG - chr6_2:71688364-71688383 Msa0927370:intron 20.0%
!! CTACATATAAAAAGAATACA+TGG + chr6_2:71688865-71688884 None:intergenic 20.0%
!! AACTTCTAATTATAAAGAAC+GGG + chr6_2:71689912-71689931 None:intergenic 20.0%
!!! TATACTTTGAGATGATTTTA+AGG - chr6_2:71690065-71690084 Msa0927370:intron 20.0%
!! ATGATGTAAATATTGTTCAT+TGG - chr6_2:71690290-71690309 Msa0927370:intron 20.0%
!! AATATTGTTCATTGGAATTA+AGG - chr6_2:71690298-71690317 Msa0927370:intron 20.0%
!! ATATTTATGTATATGCTACA+TGG + chr6_2:71690332-71690351 None:intergenic 20.0%
!! TAATATTGTATGCATTATAG+GGG - chr6_2:71690371-71690390 Msa0927370:intron 20.0%
!! TATGTAATTGTTTCATATGA+AGG - chr6_2:71690464-71690483 Msa0927370:intron 20.0%
!!! GGATTTTTTTTTGTTATGAT+AGG + chr6_2:71690509-71690528 None:intergenic 20.0%
!! TTCAAGAAAGGATTATTATT+AGG + chr6_2:71690677-71690696 None:intergenic 20.0%
! ATATATACCTGAGAATAATC+AGG + chr6_2:71687357-71687376 None:intergenic 25.0%
!!! TTGATCATTTTTTGTTGCAT+TGG + chr6_2:71687394-71687413 None:intergenic 25.0%
! GGTAGAAAATGATGTAAATT+TGG + chr6_2:71687528-71687547 None:intergenic 25.0%
!! TTTTAATAATCACATAAGCG+AGG + chr6_2:71687552-71687571 None:intergenic 25.0%
!!! AAATTTTACTTTTCAAGGGA+GGG + chr6_2:71687806-71687825 None:intergenic 25.0%
!!! TAAATTTTACTTTTCAAGGG+AGG + chr6_2:71687807-71687826 None:intergenic 25.0%
! GTAATTCAAGCATCTTATAA+GGG + chr6_2:71687839-71687858 None:intergenic 25.0%
! TGTAATTCAAGCATCTTATA+AGG + chr6_2:71687840-71687859 None:intergenic 25.0%
! TATTTAATTATTAAGGGAGG+GGG + chr6_2:71687864-71687883 None:intergenic 25.0%
! GCATATTTAATTATTAAGGG+AGG + chr6_2:71687867-71687886 None:intergenic 25.0%
! TTACTAAAGACAATAAAGCA+TGG + chr6_2:71688051-71688070 None:intergenic 25.0%
! TTCGAAAAAAATAGTATTGC+GGG + chr6_2:71688206-71688225 None:intergenic 25.0%
! CTTCGAAAAAAATAGTATTG+CGG + chr6_2:71688207-71688226 None:intergenic 25.0%
!!! ATATTTTAACATAAAAGGGG+AGG - chr6_2:71688397-71688416 Msa0927370:intron 25.0%
!!! TATTTTAACATAAAAGGGGA+GGG - chr6_2:71688398-71688417 Msa0927370:intron 25.0%
! CAAGTTACAAATACAACTAT+TGG - chr6_2:71689371-71689390 Msa0927370:intron 25.0%
! AAAAGGTAAATGATTACCTA+GGG + chr6_2:71689735-71689754 None:intergenic 25.0%
! AAAAAGGTAAATGATTACCT+AGG + chr6_2:71689736-71689755 None:intergenic 25.0%
! ATATATGATTCAAGACATCA+TGG - chr6_2:71689841-71689860 Msa0927370:intron 25.0%
! ACTTCTAATTATAAAGAACG+GGG + chr6_2:71689911-71689930 None:intergenic 25.0%
! ATAAATTTATGTCACTGTCT+TGG + chr6_2:71689958-71689977 None:intergenic 25.0%
! GGTGAAAAATCGATAATTAA+GGG + chr6_2:71690186-71690205 None:intergenic 25.0%
! TGGTGAAAAATCGATAATTA+AGG + chr6_2:71690187-71690206 None:intergenic 25.0%
! TCTGAAAGTTATGAATCTTA+TGG - chr6_2:71690635-71690654 Msa0927370:intron 25.0%
! TAATAATCCTTTCTTGAACA+TGG - chr6_2:71690679-71690698 Msa0927370:intron 25.0%
! ATGCCTTATGGATATATTAA+TGG - chr6_2:71690719-71690738 Msa0927370:intron 25.0%
! TGTCCATTAATATATCCATA+AGG + chr6_2:71690725-71690744 None:intergenic 25.0%
!! ATGATTTTCTTCGACTTAAT+GGG - chr6_2:71690843-71690862 Msa0927370:CDS 25.0%
AACAACAACAACAACAACAA+GGG - chr6_2:71687243-71687262 Msa0927370:CDS 30.0%
! GTACTTGATCGATTTAAATG+AGG - chr6_2:71687320-71687339 Msa0927370:CDS 30.0%
!! ACGCACCATTATTTTTCAAT+AGG - chr6_2:71687584-71687603 Msa0927370:CDS 30.0%
!!! TATTTTAACATAAGAGGGGA+GGG + chr6_2:71688295-71688314 None:intergenic 30.0%
!!! ATATTTTAACATAAGAGGGG+AGG + chr6_2:71688294-71688313 None:intergenic 30.0%
!! AATTTTACTTTTCAAGGGAG+GGG + chr6_2:71687805-71687824 None:intergenic 30.0%
!!! ATATTTTAACATAAGAGGGG+AGG - chr6_2:71688294-71688313 Msa0927370:intron 30.0%
ATGTAATTCAAGCTTCTCTT+AGG - chr6_2:71688320-71688339 Msa0927370:intron 30.0%
TGTAATTCAAGCTTCTCTTA+GGG - chr6_2:71688321-71688340 Msa0927370:intron 30.0%
!! ATTTTAACATAAAAGGGGAG+GGG - chr6_2:71688399-71688418 Msa0927370:intron 30.0%
TGTAATTCAAGCATCTTTGA+GGG - chr6_2:71688424-71688443 Msa0927370:intron 30.0%
CTCTTATCTTTCTTCTTATG+CGG - chr6_2:71688675-71688694 Msa0927370:intron 30.0%
GTTGTTGGTGTAATTGAAAA+AGG + chr6_2:71688757-71688776 None:intergenic 30.0%
GTAATTCGATTGAATCCATT+AGG - chr6_2:71689073-71689092 Msa0927370:intron 30.0%
! GGGAAGGAAATATTTGAAAT+TGG + chr6_2:71689164-71689183 None:intergenic 30.0%
TAATTGCATTACTTTGCACA+TGG + chr6_2:71689229-71689248 None:intergenic 30.0%
!! TGTAACTTGTTGTTCATCTA+AGG + chr6_2:71689360-71689379 None:intergenic 30.0%
TCCTAATTATTATGCAATGC+AGG - chr6_2:71689548-71689567 Msa0927370:intron 30.0%
TCCTGCATTGCATAATAATT+AGG + chr6_2:71689552-71689571 None:intergenic 30.0%
! TCAATTCTGAACACTACTTT+TGG + chr6_2:71689634-71689653 None:intergenic 30.0%
AATGAAGACAAAGTGAATGA+TGG - chr6_2:71689658-71689677 Msa0927370:intron 30.0%
! GTAATCATTTACCTTTTTCC+TGG - chr6_2:71689738-71689757 Msa0927370:intron 30.0%
! TTTTAATGCATTATTCGCCT+TGG - chr6_2:71689800-71689819 Msa0927370:intron 30.0%
CTTCTAATTATAAAGAACGG+GGG + chr6_2:71689910-71689929 None:intergenic 30.0%
! GTCACATTTGAGACAATAAA+CGG + chr6_2:71689994-71690013 None:intergenic 30.0%
!! ACGATAAATCACTTTTAGCA+GGG + chr6_2:71690109-71690128 None:intergenic 30.0%
!! TACGATAAATCACTTTTAGC+AGG + chr6_2:71690110-71690129 None:intergenic 30.0%
TATGAAGGCAAACATAATCA+CGG - chr6_2:71690479-71690498 Msa0927370:intron 30.0%
AAGATTCATAACTTTCAGAG+CGG + chr6_2:71690634-71690653 None:intergenic 30.0%
TTATTGACCATGTTCAAGAA+AGG + chr6_2:71690689-71690708 None:intergenic 30.0%
! ATTTGAAATCCACCAATACT+GGG + chr6_2:71690800-71690819 None:intergenic 30.0%
! TATTTGAAATCCACCAATAC+TGG + chr6_2:71690801-71690820 None:intergenic 30.0%
! CATGATTTTCTTCGACTTAA+TGG - chr6_2:71690842-71690861 Msa0927370:CDS 30.0%
CAACAACAACAACAACAACA+AGG - chr6_2:71687242-71687261 Msa0927370:CDS 35.0%
GGAAACCAAGTACTAAATTC+TGG - chr6_2:71687264-71687283 Msa0927370:CDS 35.0%
CAACTCCAGAATTTAGTACT+TGG + chr6_2:71687272-71687291 None:intergenic 35.0%
!! AAATTCTGGAGTTGATTGCT+CGG - chr6_2:71687278-71687297 Msa0927370:CDS 35.0%
TAATAATCACATAAGCGAGG+TGG + chr6_2:71687549-71687568 None:intergenic 35.0%
! TGACAAACGGATTCCTAATT+AGG - chr6_2:71687661-71687680 Msa0927370:CDS 35.0%
ATTGAATCGAAGGCCTAATT+AGG + chr6_2:71687677-71687696 None:intergenic 35.0%
TACATGTTGGATTGAATCGA+AGG + chr6_2:71687687-71687706 None:intergenic 35.0%
!! ATTTTAACATAAGAGGGGAG+GGG + chr6_2:71688296-71688315 None:intergenic 35.0%
TTCAAGCATCTTATAAGGGA+GGG + chr6_2:71687835-71687854 None:intergenic 35.0%
ATTCAAGCATCTTATAAGGG+AGG + chr6_2:71687836-71687855 None:intergenic 35.0%
GTAATTCAAGCTTCTCTTAG+GGG - chr6_2:71688322-71688341 Msa0927370:intron 35.0%
CTGTAATTCAAGCATCTTTG+AGG - chr6_2:71688423-71688442 Msa0927370:intron 35.0%
GTAATTCAAGCATCTTTGAG+GGG - chr6_2:71688425-71688444 Msa0927370:intron 35.0%
!! GGTCATATTTGTTGTGTTGT+TGG + chr6_2:71688772-71688791 None:intergenic 35.0%
TTGGATGTTGAACTTCATCT+TGG + chr6_2:71689145-71689164 None:intergenic 35.0%
GCTAAACGCTGAAATTCTAA+AGG - chr6_2:71689250-71689269 Msa0927370:intron 35.0%
! GAAATTCTAAAGGCTAGGAA+AGG - chr6_2:71689260-71689279 Msa0927370:intron 35.0%
GCATCTTCACGATAATTCAT+TGG + chr6_2:71689293-71689312 None:intergenic 35.0%
AAGCAACATCATTCCTTCAA+TGG + chr6_2:71689411-71689430 None:intergenic 35.0%
CATAATGATACTAGTGCTAG+TGG - chr6_2:71689434-71689453 Msa0927370:intron 35.0%
TTATTATGCAATGCAGGAAG+AGG - chr6_2:71689554-71689573 Msa0927370:intron 35.0%
CAACATTTATCATGGTGCAA+GGG + chr6_2:71689609-71689628 None:intergenic 35.0%
! TTTTGGCGCAACATTTATCA+TGG + chr6_2:71689617-71689636 None:intergenic 35.0%
AAGTGAATGATGGTTATCGT+TGG - chr6_2:71689668-71689687 Msa0927370:intron 35.0%
AAGGAAATGCTAAATACCCT+AGG - chr6_2:71689716-71689735 Msa0927370:intron 35.0%
CCTCTTTCATATATACACCA+AGG + chr6_2:71689820-71689839 None:intergenic 35.0%
! CCTTGGTGTATATATGAAAG+AGG - chr6_2:71689817-71689836 Msa0927370:intron 35.0%
!! CGATAAATCACTTTTAGCAG+GGG + chr6_2:71690108-71690127 None:intergenic 35.0%
AACCTGTAATGTGAGAAAAC+AGG - chr6_2:71690415-71690434 Msa0927370:intron 35.0%
AGTGTAGTACTTGACTTTGT+TGG + chr6_2:71690530-71690549 None:intergenic 35.0%
CTTATGGTAAGAACTGTACT+TGG - chr6_2:71690651-71690670 Msa0927370:intron 35.0%
! AATACCATGATGATGCCTTA+TGG - chr6_2:71690707-71690726 Msa0927370:intron 35.0%
! ATATCCATAAGGCATCATCA+TGG + chr6_2:71690714-71690733 None:intergenic 35.0%
! AAATCATGAAGTTCTGGTAG+TGG + chr6_2:71690830-71690849 None:intergenic 35.0%
CGAAGAAAATCATGAAGTTC+TGG + chr6_2:71690836-71690855 None:intergenic 35.0%
! GCTAGAATGTTTCCTTTTGA+AGG - chr6_2:71690881-71690900 Msa0927370:CDS 35.0%
!! TCGTTGGCTTCATGATTAAT+TGG + chr6_2:71690914-71690933 None:intergenic 35.0%
TCCTTCTCCTGATTATTCTC+AGG - chr6_2:71687347-71687366 Msa0927370:CDS 40.0%
ACCTGAGAATAATCAGGAGA+AGG + chr6_2:71687351-71687370 None:intergenic 40.0%
! TTTTTGTTGCATTGGAGCAG+AGG + chr6_2:71687386-71687405 None:intergenic 40.0%
GTAACTCAAGCTTCCTTGAA+GGG + chr6_2:71687749-71687768 None:intergenic 40.0%
TGTAACTCAAGCTTCCTTGA+AGG + chr6_2:71687750-71687769 None:intergenic 40.0%
TCAAGCATCTTATAAGGGAG+GGG + chr6_2:71687834-71687853 None:intergenic 40.0%
!! TGTTTTGAATAAGAGGGGAG+TGG - chr6_2:71688369-71688388 Msa0927370:intron 40.0%
ATCCATTAGGCTGTTGTTGA+TGG - chr6_2:71689086-71689105 Msa0927370:intron 40.0%
AACCATCAACAACAGCCTAA+TGG + chr6_2:71689091-71689110 None:intergenic 40.0%
!! TGTTGTTGATGGTTTCCACA+TGG - chr6_2:71689097-71689116 Msa0927370:intron 40.0%
! TTGATCAAGTGTTGTTGGGA+AGG + chr6_2:71689180-71689199 None:intergenic 40.0%
TTCCCAACAACACTTGATCA+AGG - chr6_2:71689179-71689198 Msa0927370:intron 40.0%
! GTCCTTGATCAAGTGTTGTT+GGG + chr6_2:71689184-71689203 None:intergenic 40.0%
! TGTCCTTGATCAAGTGTTGT+TGG + chr6_2:71689185-71689204 None:intergenic 40.0%
ACAACACTTGATCAAGGACA+TGG - chr6_2:71689185-71689204 Msa0927370:intron 40.0%
! ACGCTGAAATTCTAAAGGCT+AGG - chr6_2:71689255-71689274 Msa0927370:intron 40.0%
ATCAGCTGCAACAACTTCTT+GGG + chr6_2:71689321-71689340 None:intergenic 40.0%
TGCAGCTGATGAAGCAAAAA+CGG - chr6_2:71689331-71689350 Msa0927370:intron 40.0%
GTTGAAGCAAGTTCCATTGA+AGG - chr6_2:71689395-71689414 Msa0927370:intron 40.0%
! CTAGTGGATCTTCTTCACAA+AGG - chr6_2:71689450-71689469 Msa0927370:intron 40.0%
GCAACATTTATCATGGTGCA+AGG + chr6_2:71689610-71689629 None:intergenic 40.0%
GGTTATCGTTGGCATAAGTA+TGG - chr6_2:71689679-71689698 Msa0927370:intron 40.0%
! TTGCATTGACACCAGGAAAA+AGG + chr6_2:71689752-71689771 None:intergenic 40.0%
TGCATTATAGGGGATACTAC+AGG - chr6_2:71690381-71690400 Msa0927370:intron 40.0%
! CACCTGTTTTCTCACATTAC+AGG + chr6_2:71690420-71690439 None:intergenic 40.0%
CTGTAATGTGAGAAAACAGG+TGG - chr6_2:71690418-71690437 Msa0927370:intron 40.0%
ATGTGAGAAAACAGGTGGAA+AGG - chr6_2:71690423-71690442 Msa0927370:intron 40.0%
TGTGAGAAAACAGGTGGAAA+GGG - chr6_2:71690424-71690443 Msa0927370:intron 40.0%
TTCATTACTAGGACTGTCGT+TGG + chr6_2:71690930-71690949 None:intergenic 40.0%
! GAGTTGATTGCTCGGCAATA+AGG - chr6_2:71687286-71687305 Msa0927370:CDS 45.0%
TTGATTGCTCGGCAATAAGG+AGG - chr6_2:71687289-71687308 Msa0927370:CDS 45.0%
TGATTGCTCGGCAATAAGGA+GGG - chr6_2:71687290-71687309 Msa0927370:CDS 45.0%
ATTCAAGCTTCTCTTAGGGG+AGG - chr6_2:71688325-71688344 Msa0927370:intron 45.0%
TTCAAGCTTCTCTTAGGGGA+GGG - chr6_2:71688326-71688345 Msa0927370:intron 45.0%
! ATTCAAGCATCTTTGAGGGG+AGG - chr6_2:71688428-71688447 Msa0927370:intron 45.0%
TGATGGTTTCCACATGGCAA+CGG - chr6_2:71689103-71689122 Msa0927370:intron 45.0%
CATCAGCTGCAACAACTTCT+TGG + chr6_2:71689322-71689341 None:intergenic 45.0%
TTGGCATAAGTATGGACGCA+AGG - chr6_2:71689687-71689706 Msa0927370:intron 45.0%
TATGGACGCAAGGAGATCAA+AGG - chr6_2:71689697-71689716 Msa0927370:intron 45.0%
! CACATACTTGCATTGACACC+AGG + chr6_2:71689759-71689778 None:intergenic 45.0%
GTCATAGGCAATGCAAAAGG+TGG + chr6_2:71690590-71690609 None:intergenic 45.0%
TGGGTCATAGGCAATGCAAA+AGG + chr6_2:71690593-71690612 None:intergenic 45.0%
TCATAACTTTCAGAGCGGTG+AGG + chr6_2:71690629-71690648 None:intergenic 45.0%
AATACTGGGAACAGCTTGAG+AGG + chr6_2:71690786-71690805 None:intergenic 45.0%
TCTCAAGCTGTTCCCAGTAT+TGG - chr6_2:71690785-71690804 Msa0927370:intron 45.0%
!! TCATGAAGTTCTGGTAGTGG+TGG + chr6_2:71690827-71690846 None:intergenic 45.0%
ATTGGTGCAGCACCTTCAAA+AGG + chr6_2:71690896-71690915 None:intergenic 45.0%
! GTTGTTGTTGTCGTCGTCCA+TGG + chr6_2:71687232-71687251 None:intergenic 50.0%
ATTAGACTCCCCTCCCTTCA+AGG - chr6_2:71687733-71687752 Msa0927370:CDS 50.0%
TCAAGCTTCCTTGAAGGGAG+GGG + chr6_2:71687744-71687763 None:intergenic 50.0%
CTCAAGCTTCCTTGAAGGGA+GGG + chr6_2:71687745-71687764 None:intergenic 50.0%
ACTCAAGCTTCCTTGAAGGG+AGG + chr6_2:71687746-71687765 None:intergenic 50.0%
TCAAGCTTCTCTTAGGGGAG+GGG - chr6_2:71688327-71688346 Msa0927370:intron 50.0%
GATGGTTTCCACATGGCAAC+GGG - chr6_2:71689104-71689123 Msa0927370:intron 50.0%
GCTGCAACAACTTCTTGGGT+AGG + chr6_2:71689317-71689336 None:intergenic 50.0%
CACTGACAACAGTAGCACGT+AGG - chr6_2:71690546-71690565 Msa0927370:intron 50.0%
GGTGTGAAAGGTTGGGTCAT+AGG + chr6_2:71690605-71690624 None:intergenic 50.0%
! GTGAGGAGGTGTGAAAGGTT+GGG + chr6_2:71690612-71690631 None:intergenic 50.0%
TAACTTTCAGAGCGGTGAGG+AGG + chr6_2:71690626-71690645 None:intergenic 50.0%
GCTTGAGAGGCAGCAATTGA+AGG + chr6_2:71690773-71690792 None:intergenic 50.0%
! CAAGCTGTTCCCAGTATTGG+TGG - chr6_2:71690788-71690807 Msa0927370:intron 50.0%
TTCCACATGGCAACGGGAGT+AGG - chr6_2:71689110-71689129 Msa0927370:intron 55.0%
! GGTGAGGAGGTGTGAAAGGT+TGG + chr6_2:71690613-71690632 None:intergenic 55.0%
CACCTACTCCCGTTGCCATG+TGG + chr6_2:71689115-71689134 None:intergenic 60.0%
!! ACGGGGGCGTCAGTAGTTGT+TGG + chr6_2:71689894-71689913 None:intergenic 60.0%
! GAGCGGTGAGGAGGTGTGAA+AGG + chr6_2:71690617-71690636 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 71687219 71690952 71687219 ID=Msa0927370;Name=Msa0927370
chr6_2 mRNA 71687219 71690952 71687219 ID=Msa0927370-mRNA-1;Parent=Msa0927370;Name=Msa0927370-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|4|0|418
chr6_2 exon 71690803 71690952 71690803 ID=Msa0927370-mRNA-1:exon:12014;Parent=Msa0927370-mRNA-1
chr6_2 exon 71688700 71689076 71688700 ID=Msa0927370-mRNA-1:exon:12013;Parent=Msa0927370-mRNA-1
chr6_2 exon 71688434 71688601 71688434 ID=Msa0927370-mRNA-1:exon:12012;Parent=Msa0927370-mRNA-1
chr6_2 exon 71687219 71687780 71687219 ID=Msa0927370-mRNA-1:exon:12011;Parent=Msa0927370-mRNA-1
chr6_2 CDS 71690803 71690952 71690803 ID=Msa0927370-mRNA-1:cds;Parent=Msa0927370-mRNA-1
chr6_2 CDS 71688700 71689076 71688700 ID=Msa0927370-mRNA-1:cds;Parent=Msa0927370-mRNA-1
chr6_2 CDS 71688434 71688601 71688434 ID=Msa0927370-mRNA-1:cds;Parent=Msa0927370-mRNA-1
chr6_2 CDS 71687219 71687780 71687219 ID=Msa0927370-mRNA-1:cds;Parent=Msa0927370-mRNA-1
Gene Sequence

>Msa0927370

ATGTCTCATACCATGGACGACGACAACAACAACAACAACAACAAGGGAAACCAAGTACTAAATTCTGGAGTTGATTGCTCGGCAATAAGGAGGGAGAAAAAGTACTTGATCGATTTAAATGAGGTTTGTCCTTCTCCTGATTATTCTCAGGCTGTTGTTGATGGTTTCCACATGGCAACGGGAGTAGGTGTAGAACTCCAAGATGAAGTTCAACATCCAATTTCAAATATTTCCTTCCCAACAACACTTGATCAAGGACATGGTGCAGAAAAAGAACAAGTCCATGTGCAAAGTAATGCAATTACGCTAAACGCTGAAATTCTAAAGGCTAGGAAAGGAAAGATGCCAATGAATTATCGTGAAGATGCACCTACCCAAGAAGTTGTTGCAGCTGATGAAGCAAAAACGGTATCCTTAGATGAACAACAAGTTACAAATACAACTATTGGTGTTGAAGCAAGTTCCATTGAAGGAATGATGTTGCTTCAACATAATGATACTAGTGCTAGTGGATCTTCTTCACAAAGGAAGAGGAAAATTGACTTCTCTGAACACTATAAACTCCCTTGCACCATGATAAATGTTGCGCCAAAAGTAGTGTTCAGAATTGAAATCAATGAAGACAAAGTGAATGATGGTTATCGTTGGCATAAGTATGGACGCAAGGAGATCAAAGGAAATGCTAAATACCCTAGGGGATACTACAGGTGTACAACAAAAACCTGTAATGTGAGAAAACAGGTGGAAAGGGATGCACAGAATCCGAAATATGTAATTGTTTCATATGAAGGCAAACATAATCACGGATTCCCTATCATAACAAAAAAAAATCCAACAAAGTCAAGTACTACACTGACAACAGTAGCACGTAGGAATGCTAGCATTGTATCGCCACCTTTTGCATTGCCTATGACCCAACCTTTCACACCTCCTCACCGCTCTGAAAGTTATGAATCTTATGGTAAGAACTGTACTTGGCCTAATAATAATCCTTTCTTGAACATGGTCAATAATACCATGATGATGCCTTATGGATATATTAATGGACAACATTTTCGAGATTGTTATGCTGCTCCTTCAATTGCTGCCTCTCAAGCTGTTCCCAGTATTGGTGGATTTCAAATATCTCCACCACTACCAGAACTTCATGATTTTCTTCGACTTAATGGGTACAATATTGCTGCTGCTAGAATGTTTCCTTTTGAAGGTGCTGCACCAATTAATCATGAAGCCAACGACAGTCCTAGTAATGAATGA
Protein sequence

>Msa0927370

MSHTMDDDNNNNNNKGNQVLNSGVDCSAIRREKKYLIDLNEVCPSPDYSQAVVDGFHMATGVGVELQDEVQHPISNISFPTTLDQGHGAEKEQVHVQSNAITLNAEILKARKGKMPMNYREDAPTQEVVAADEAKTVSLDEQQVTNTTIGVEASSIEGMMLLQHNDTSASGSSSQRKRKIDFSEHYKLPCTMINVAPKVVFRIEINEDKVNDGYRWHKYGRKEIKGNAKYPRGYYRCTTKTCNVRKQVERDAQNPKYVIVSYEGKHNHGFPIITKKNPTKSSTTLTTVARRNASIVSPPFALPMTQPFTPPHRSESYESYGKNCTWPNNNPFLNMVNNTMMMPYGYINGQHFRDCYAAPSIAASQAVPSIGGFQISPPLPELHDFLRLNGYNIAAARMFPFEGAAPINHEANDSPSNE*