AlfalfaGEDB | Msa0927860

M. sativa cultivar zhongmu-4 / Msa0927860

KEGG: K14574
GO: GO:0000226 GO:0000278 GO:0000922 GO:0001501 GO:0001503 GO:0002376 GO:0002520 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005819 GO:0005856 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006928 GO:0006935 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0007275 GO:0008017 GO:0008092 GO:0008150 GO:0008152 GO:0008283 GO:0009605 GO:0009888 GO:0009987 GO:0010467 GO:0015630 GO:0015631 GO:0016043 GO:0016070 GO:0016072 GO:0016477 GO:0019843 GO:0022402 GO:0022607 GO:0022613 GO:0022618 GO:0030282 GO:0030595 GO:0031214 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0040011 GO:0042221 GO:0042254 GO:0042255 GO:0042256 GO:0042330 GO:0043021 GO:0043022 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044446 GO:0044464 GO:0044877 GO:0046483 GO:0048513 GO:0048534 GO:0048539 GO:0048731 GO:0048856 GO:0048870 GO:0050896 GO:0050900 GO:0051179 GO:0051674 GO:0051716 GO:0060326 GO:0060348 GO:0065003 GO:0070013 GO:0070887 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902850 GO:1903047
PFAM: PF01172.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0927860	XP_013453051.1	95.810	358	6	1	1	349	1	358	0.0	714

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0927860	sp\|P70122\|SBDS_MOUSE	46.748	246	119	3	4	238	2	246	2.13e-70	223

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa0927860	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0927860	MtrunA17_Chr6g0485001	95.810	358	6	1	1	349	1	358	0.0	714

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0927860	AT1G43860.1	60.916	371	122	7	1	349	1	370	4.91e-159	450
Msa0927860	AT1G43860.2	55.652	345	121	8	27	349	1	335	1.39e-127	369

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Find 93 sgRNAs with CRISPR-Local

Find 350 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTCTTGTGCATTACAA+TGG	0.555238	6_2:+72424524	None:intergenic
AAAAGTGTTTGAGATGTTAC+TGG	0.342230	6_2:-72422531	Msa0927860:three_prime_UTR
AAACAGCACCTCCAAGAAGC+AGG	0.539561	6_2:-72424424	Msa0927860:intron
AAAGGGGAACTTCAGGTTGC+TGG	0.407398	6_2:-72424594	Msa0927860:intron
AAGGATTTGAATGCGGCGTT+TGG	0.443098	6_2:-72426966	Msa0927860:CDS
AATGCTGTCTAGTCAGTTCA+GGG	0.557997	6_2:-72424556	Msa0927860:CDS
ACAAGATACCTGCTTCTTGG+AGG	0.519410	6_2:+72424416	None:intergenic
ACAATATGAAGCGTAAAACA+AGG	0.648014	6_2:-72422677	Msa0927860:CDS
ACAGGCTCTGGAGTTGATTC+AGG	0.285367	6_2:-72424314	Msa0927860:intron
ACCCTAACACCGTTCTTTCA+TGG	0.342417	6_2:-72427159	Msa0927860:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTTTATACGAATGTTTCGAA+AGG	-	chr6_2:72422470-72422489	Msa0927860:three_prime_UTR	30.0%
TAAGTCTAAGGATTTGAATG+CGG	-	chr6_2:72422502-72422521	Msa0927860:three_prime_UTR	30.0%
TAGCTACAAAACAACTAACA+TGG	+	chr6_2:72422594-72422613	None:intergenic	30.0%
TTTATGCTTAGAGTTTGGTT+AGG	-	chr6_2:72423209-72423228	Msa0927860:intron	30.0%
CATAATTTATGCTTAGAGGT+TGG	-	chr6_2:72423246-72423265	Msa0927860:intron	30.0%
TGACATTGAATTGATCAAGT+AGG	+	chr6_2:72423277-72423296	None:intergenic	30.0%
TTAAGCACTCATGCTTAATT+TGG	-	chr6_2:72423544-72423563	Msa0927860:intron	30.0%
TAAGCACTCATGCTTAATTT+GGG	-	chr6_2:72423545-72423564	Msa0927860:intron	30.0%
TAACTCATTTCCTAAGCTTA+TGG	+	chr6_2:72423671-72423690	None:intergenic	30.0%
GCTTTATCCAATAGTTGAAA+AGG	+	chr6_2:72423775-72423794	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_2	gene	72422108	72427389	72422108	ID=Msa0927860;Name=Msa0927860
chr6_2	mRNA	72422108	72427389	72422108	ID=Msa0927860-mRNA-1;Parent=Msa0927860;Name=Msa0927860-mRNA-1;_AED=0.04;_eAED=0.04;_QI=108\|0.75\|0.6\|1\|0.75\|0.6\|5\|482\|349
chr6_2	exon	72422108	72423033	72422108	ID=Msa0927860-mRNA-1:exon:12302;Parent=Msa0927860-mRNA-1
chr6_2	exon	72424165	72424332	72424165	ID=Msa0927860-mRNA-1:exon:12301;Parent=Msa0927860-mRNA-1
chr6_2	exon	72424425	72424612	72424425	ID=Msa0927860-mRNA-1:exon:12300;Parent=Msa0927860-mRNA-1
chr6_2	exon	72426949	72427064	72426949	ID=Msa0927860-mRNA-1:exon:12299;Parent=Msa0927860-mRNA-1
chr6_2	exon	72427148	72427389	72427148	ID=Msa0927860-mRNA-1:exon:12298;Parent=Msa0927860-mRNA-1
chr6_2	five_prime_UTR	72427282	72427389	72427282	ID=Msa0927860-mRNA-1:five_prime_utr;Parent=Msa0927860-mRNA-1
chr6_2	CDS	72427148	72427281	72427148	ID=Msa0927860-mRNA-1:cds;Parent=Msa0927860-mRNA-1
chr6_2	CDS	72426949	72427064	72426949	ID=Msa0927860-mRNA-1:cds;Parent=Msa0927860-mRNA-1
chr6_2	CDS	72424425	72424612	72424425	ID=Msa0927860-mRNA-1:cds;Parent=Msa0927860-mRNA-1
chr6_2	CDS	72424165	72424332	72424165	ID=Msa0927860-mRNA-1:cds;Parent=Msa0927860-mRNA-1
chr6_2	CDS	72422590	72423033	72422590	ID=Msa0927860-mRNA-1:cds;Parent=Msa0927860-mRNA-1
chr6_2	three_prime_UTR	72422108	72422589	72422108	ID=Msa0927860-mRNA-1:three_prime_utr;Parent=Msa0927860-mRNA-1

Gene Sequence

>Msa0927860

ATGTCTCGTTCATTGGTTCAACCAGTAGGTCAAAAGCGATTAACAAACGTAGCAGTTGTTCGTCTCAAGAAACACGGCATGCGTTTCGAAATCGCTTGTTACCCTAACACCGTTCTTTCATGGCGTTCCGGCGTTGAAAAGGATATTGATGAAGTGTTGCAGTCACATACGGTTTATACGAATGTTTCGAAAGGTGTTCTTGCTAAGTCTAAGGATTTGAATGCGGCGTTTGGTACTGATGATCATTCCAGGGAACTTCAGGTTGCTGGTAAAGAGAGGGAGTCAATGCTGTCTAGTCAGTTCAGGGACATAGCCACCATTGTAATGCACAAGACTTTTAATCCCGAGACTAAGCGCCCTTACACTATCAGCATGATTGAACGCCTCATGAGGGATATCCATTTCGCTGTTGATCCAAACAGCACCTCCAAGAAGCAGGCTCTGGAGTTGATTCAGGAGCTTCAGAAGCACTACCCTATAAAACGGTGTCCATTGAGGGTACGCGCTGCTGCCCCTGAGGAGGAAGTACCTATCCTTTTGGAAAAGCTGAGCGAGTGGAAGGCAACCGTTATTTCTAAAGAAGGGACAGCTGCTCAGCTATCTGTTATTTTTGAATTGGAGCCTGGTCTGTATAAGGATTGTCACGACTTTGTTATGAATAAGATGCATGGAAGATTTGAAGTTCTTGCTCACTCTCTTTATGTGGATGGGGATACTCATGTGGATTACAATGATCACGAGGACACGCCTGCACCATTGCCCCAAAGAACTTCTGAATCCGTGCTTGAGCTGAATGATAAACTTCAAAAGCAAACAATTTCGTCTGGACCTAAGCCTACTGAGGGACAACAACCAAAGCAAAACAAGTGCAACACATGTGATGCTTGTTTTGAAGATGCTAAGTTGTACAGGGAACACCACAAGAGTGAGTGGCACAAGCACAATATGAAGCGTAAAACAAGGCAACTCCCTCCACTATCTGAAGAAGAGTGCACAGCAGATATGGAATTGTTTGAATCAAAATCTGATTTGAAGGATTATTCATTTTGA

Protein sequence

>Msa0927860

MSRSLVQPVGQKRLTNVAVVRLKKHGMRFEIACYPNTVLSWRSGVEKDIDEVLQSHTVYTNVSKGVLAKSKDLNAAFGTDDHSRELQVAGKERESMLSSQFRDIATIVMHKTFNPETKRPYTISMIERLMRDIHFAVDPNSTSKKQALELIQELQKHYPIKRCPLRVRAAAPEEEVPILLEKLSEWKATVISKEGTAAQLSVIFELEPGLYKDCHDFVMNKMHGRFEVLAHSLYVDGDTHVDYNDHEDTPAPLPQRTSESVLELNDKLQKQTISSGPKPTEGQQPKQNKCNTCDACFEDAKLYREHHKSEWHKHNMKRKTRQLPPLSEEECTADMELFESKSDLKDYSF*