AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0927860

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0927860 MtrunA17_Chr6g0485001 95.810 358 6 1 1 349 1 358 0.0 714
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0927860 AT1G43860.1 60.916 371 122 7 1 349 1 370 4.91e-159 450
Msa0927860 AT1G43860.2 55.652 345 121 8 27 349 1 335 1.39e-127 369

Find 93 sgRNAs with CRISPR-Local

Find 350 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCGATGTAATTTCAATTTA+AGG 0.072912 6_2:+72422415 None:intergenic
TGAAATGAAATTGGAGATTC+TGG 0.205678 6_2:+72427370 None:intergenic
CATCGAACGTATTTCATTAC+TGG 0.254025 6_2:-72422399 Msa0927860:three_prime_UTR
GCACGGATTCAGAAGTTCTT+TGG 0.262575 6_2:+72422856 None:intergenic
CACGGATTCAGAAGTTCTTT+GGG 0.284543 6_2:+72422857 None:intergenic
ACAGGCTCTGGAGTTGATTC+AGG 0.285367 6_2:-72424314 Msa0927860:intron
CAAGACTCTCCTAACAAAAT+AGG 0.298300 6_2:+72422471 None:intergenic
ATTGGAGCCTGGTCTGTATA+AGG 0.329038 6_2:-72423003 Msa0927860:CDS
TGCTTCTTGGAGGTGCTGTT+TGG 0.331667 6_2:+72424426 None:intergenic
CAATGCTGTCTAGTCAGTTC+AGG 0.331986 6_2:-72424557 Msa0927860:CDS
AGGTGTTCTTGCTAAGTCTA+AGG 0.333707 6_2:-72426985 Msa0927860:CDS
CTTCTATTCTTAAGTTTCCT+AGG 0.338536 6_2:-72422213 Msa0927860:three_prime_UTR
GAAATGAAATGAAATGAAAT+TGG 0.340542 6_2:+72427361 None:intergenic
AAAAGTGTTTGAGATGTTAC+TGG 0.342230 6_2:-72422531 Msa0927860:three_prime_UTR
ACCCTAACACCGTTCTTTCA+TGG 0.342417 6_2:-72427159 Msa0927860:CDS
CGCCATGAAAGAACGGTGTT+AGG 0.353355 6_2:+72427157 None:intergenic
TACAACAATGTCTCGTTCAT+TGG 0.364319 6_2:-72427266 Msa0927860:exon
GGAGGAAGTACCTATCCTTT+TGG 0.369437 6_2:-72424230 Msa0927860:CDS
CTCACTCTCTTTATGTGGAT+GGG 0.371029 6_2:-72422929 Msa0927860:CDS
TTTAAAGAAAGGGGAACTTC+AGG 0.373529 6_2:-72424601 Msa0927860:intron
AGAAGAGTGCACAGCAGATA+TGG 0.383434 6_2:-72422634 Msa0927860:CDS
TGAATCAAAATCTGATTTGA+AGG 0.396855 6_2:-72422604 Msa0927860:CDS
GCTCACTCTCTTTATGTGGA+TGG 0.397818 6_2:-72422930 Msa0927860:CDS
TGTGCGGTTCTGCTTTCTCT+TGG 0.398110 6_2:-72422367 Msa0927860:three_prime_UTR
AAAGGGGAACTTCAGGTTGC+TGG 0.407398 6_2:-72424594 Msa0927860:intron
ACCGTTCTTTCATGGCGTTC+CGG 0.423741 6_2:-72427151 Msa0927860:CDS
GGTTCTGCTTTCTCTTGGTC+TGG 0.427589 6_2:-72422362 Msa0927860:three_prime_UTR
AGGATAGGTACTTCCTCCTC+AGG 0.427749 6_2:+72424235 None:intergenic
TGTTGTCCCTCAGTAGGCTT+AGG 0.430168 6_2:+72422789 None:intergenic
TTGAAGATGCTAAGTTGTAC+AGG 0.433138 6_2:-72422728 Msa0927860:CDS
TGTCCCTTCTTTAGAAATAA+CGG 0.436135 6_2:+72424183 None:intergenic
TCTTGCTCACTCTCTTTATG+TGG 0.440257 6_2:-72422934 Msa0927860:CDS
TCAATCATGCTGATAGTGTA+AGG 0.442974 6_2:+72424483 None:intergenic
AAGGATTTGAATGCGGCGTT+TGG 0.443098 6_2:-72426966 Msa0927860:CDS
CAAAAGCAAACAATTTCGTC+TGG 0.443371 6_2:-72422813 Msa0927860:CDS
GTTCTTTGGGGCAATGGTGC+AGG 0.443834 6_2:+72422870 None:intergenic
TCCTGAAAATCATGGATACT+TGG 0.447974 6_2:+72422186 None:intergenic
TCAGAAGTTCTTTGGGGCAA+TGG 0.449572 6_2:+72422864 None:intergenic
AGGACAAGATACCTGCTTCT+TGG 0.450486 6_2:+72424413 None:intergenic
GCAACCGTTATTTCTAAAGA+AGG 0.452079 6_2:-72424187 Msa0927860:CDS
TTCTATTCTTAAGTTTCCTA+GGG 0.456608 6_2:-72422212 Msa0927860:three_prime_UTR
GCAGCAGCGCGTACCCTCAA+TGG 0.474471 6_2:+72424259 None:intergenic
CAGATAAGTCCTGAAAATCA+TGG 0.488086 6_2:+72422178 None:intergenic
GTGCACTCTTCTTCAGATAG+TGG 0.490526 6_2:+72422645 None:intergenic
TTTGGTTGTTGTCCCTCAGT+AGG 0.497330 6_2:+72422783 None:intergenic
AGTGTAAGGGCGCTTAGTCT+CGG 0.500797 6_2:+72424497 None:intergenic
TCACTCTCTTTATGTGGATG+GGG 0.502380 6_2:-72422928 Msa0927860:CDS
GCCATGAAAGAACGGTGTTA+GGG 0.509375 6_2:+72427158 None:intergenic
ACGCGCTGCTGCCCCTGAGG+AGG 0.512519 6_2:-72424248 Msa0927860:CDS
ACAAGATACCTGCTTCTTGG+AGG 0.519410 6_2:+72424416 None:intergenic
GTGTAAGGGCGCTTAGTCTC+GGG 0.522577 6_2:+72424498 None:intergenic
CTATAAAACGGTGTCCATTG+AGG 0.535043 6_2:-72424273 Msa0927860:CDS
AAACAGCACCTCCAAGAAGC+AGG 0.539561 6_2:-72424424 Msa0927860:intron
TGTTTGGATCAACAGCGAAA+TGG 0.541879 6_2:+72424442 None:intergenic
TATAAAACGGTGTCCATTGA+GGG 0.542061 6_2:-72424272 Msa0927860:CDS
TGAAGTGTTGCAGTCACATA+CGG 0.542659 6_2:-72427027 Msa0927860:CDS
TTCATACAAAGTAACAGAAG+TGG 0.552956 6_2:+72422095 None:intergenic
AGAAGCACTACCCTATAAAA+CGG 0.553845 6_2:-72424285 Msa0927860:CDS
AAAAGTCTTGTGCATTACAA+TGG 0.555238 6_2:+72424524 None:intergenic
AATGCTGTCTAGTCAGTTCA+GGG 0.557997 6_2:-72424556 Msa0927860:CDS
GCTTGTGCCACTCACTCTTG+TGG 0.558268 6_2:+72422700 None:intergenic
CGTTCATTGGTTCAACCAGT+AGG 0.559659 6_2:-72427253 Msa0927860:CDS
CAACCGTTATTTCTAAAGAA+GGG 0.568663 6_2:-72424186 Msa0927860:CDS
GCATGATTGAACGCCTCATG+AGG 0.570502 6_2:-72424470 Msa0927860:CDS
GGAAAAGCTGAGCGAGTGGA+AGG 0.571341 6_2:-72424209 Msa0927860:CDS
TTTATCATTCAGCTCAAGCA+CGG 0.574553 6_2:+72422839 None:intergenic
TTTGTTATGAATAAGATGCA+TGG 0.575041 6_2:-72422969 Msa0927860:CDS
CACTCTTCTTCAGATAGTGG+AGG 0.576466 6_2:+72422648 None:intergenic
GGATAGGTACTTCCTCCTCA+GGG 0.584943 6_2:+72424236 None:intergenic
GCCGGAACGCCATGAAAGAA+CGG 0.596078 6_2:+72427150 None:intergenic
GTTTATACGAATGTTTCGAA+AGG 0.596420 6_2:-72427005 Msa0927860:CDS
TTCAGGTTGCTGGTAAAGAG+AGG 0.599142 6_2:-72424584 Msa0927860:CDS
CAATCATGCTGATAGTGTAA+GGG 0.615053 6_2:+72424484 None:intergenic
TGAAGATGCTAAGTTGTACA+GGG 0.615157 6_2:-72422727 Msa0927860:CDS
AGTCTTGTGCATTACAATGG+TGG 0.616545 6_2:+72424527 None:intergenic
CATGGATACTTGGATCCCCT+AGG 0.627204 6_2:+72422196 None:intergenic
CGAAATGGATATCCCTCATG+AGG 0.633330 6_2:+72424457 None:intergenic
TCAGGTTGCTGGTAAAGAGA+GGG 0.634218 6_2:-72424583 Msa0927860:CDS
ACGGATTCAGAAGTTCTTTG+GGG 0.636915 6_2:+72422858 None:intergenic
TGACAATCCTTATACAGACC+AGG 0.646899 6_2:+72422996 None:intergenic
GGGAACACCACAAGAGTGAG+TGG 0.646994 6_2:-72422707 Msa0927860:CDS
ACAATATGAAGCGTAAAACA+AGG 0.648014 6_2:-72422677 Msa0927860:CDS
TGTGGATGGGGATACTCATG+TGG 0.649096 6_2:-72422916 Msa0927860:CDS
ACTCTTCTTCAGATAGTGGA+GGG 0.651530 6_2:+72422649 None:intergenic
CATGATTGAACGCCTCATGA+GGG 0.655277 6_2:-72424469 Msa0927860:CDS
GTCTGGACCTAAGCCTACTG+AGG 0.658281 6_2:-72422796 Msa0927860:CDS
TCTGGACCTAAGCCTACTGA+GGG 0.681737 6_2:-72422795 Msa0927860:CDS
TAAGTCTAAGGATTTGAATG+CGG 0.687944 6_2:-72426973 Msa0927860:CDS
TCTATTCTTAAGTTTCCTAG+GGG 0.691891 6_2:-72422211 Msa0927860:three_prime_UTR
GTTGTTCGTCTCAAGAAACA+CGG 0.697669 6_2:-72427205 Msa0927860:CDS
GATAGGTACTTCCTCCTCAG+GGG 0.704780 6_2:+72424237 None:intergenic
TTACTGGTGACAGATTTGTG+CGG 0.714129 6_2:-72422383 Msa0927860:three_prime_UTR
TGTGGATTACAATGATCACG+AGG 0.775410 6_2:-72422898 Msa0927860:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAATTATAATTAATAACA+GGG + chr6_2:72426336-72426355 None:intergenic 10.0%
!! AAAGAATTATAATTAATAAC+AGG + chr6_2:72426337-72426356 None:intergenic 10.0%
!!! ATAATAACTTTTAATCATTA+AGG - chr6_2:72427324-72427343 Msa0927860:five_prime_UTR 10.0%
!! CATAATAATCACAAAAATTA+GGG + chr6_2:72422369-72422388 None:intergenic 15.0%
!! ACATAATAATCACAAAAATT+AGG + chr6_2:72422370-72422389 None:intergenic 15.0%
!!! TTCTTTTTTGATGAATAAAA+GGG + chr6_2:72424078-72424097 None:intergenic 15.0%
!!! TTTCTTTTTTGATGAATAAA+AGG + chr6_2:72424079-72424098 None:intergenic 15.0%
!! AAATAATGTTTATTCAAAGT+TGG - chr6_2:72424136-72424155 Msa0927860:intron 15.0%
!! AAAAAAAAGAAAAAAGCTTA+TGG + chr6_2:72424305-72424324 None:intergenic 15.0%
!!! ATAAGCTTTTTTCTTTTTTT+TGG - chr6_2:72424304-72424323 Msa0927860:CDS 15.0%
!!! TTTTTTGGAATAAGTTATTT+AGG - chr6_2:72424319-72424338 Msa0927860:intron 15.0%
!! AGAATATTTACAACTTATTT+GGG - chr6_2:72424513-72424532 Msa0927860:CDS 15.0%
!!! AAGATATAAGTTGATTATAA+GGG + chr6_2:72424691-72424710 None:intergenic 15.0%
!! AAAATAAAACTAGAAATACA+AGG - chr6_2:72425744-72425763 Msa0927860:intron 15.0%
!! ATTTCAAATATTATTACTGT+TGG - chr6_2:72426309-72426328 Msa0927860:intron 15.0%
!! AGAATTATAATTAATAACAG+GGG + chr6_2:72426335-72426354 None:intergenic 15.0%
!! GAAATGAAATGAAATGAAAT+TGG + chr6_2:72422117-72422136 None:intergenic 20.0%
!!! GATTAATTGAGTTAATTTGA+TGG - chr6_2:72422390-72422409 Msa0927860:three_prime_UTR 20.0%
!!! AGTTAATTTGATGGATTAAT+CGG - chr6_2:72422399-72422418 Msa0927860:three_prime_UTR 20.0%
!!! ATTGACTTTTTAATAAGCTT+TGG - chr6_2:72422979-72422998 Msa0927860:CDS 20.0%
!! TTTACATAATTTATGCTTAG+AGG - chr6_2:72423200-72423219 Msa0927860:intron 20.0%
!!! AGGTTTTTAGTTTCTATTTT+GGG - chr6_2:72424044-72424063 Msa0927860:intron 20.0%
!!! TCTTTTTTGATGAATAAAAG+GGG + chr6_2:72424077-72424096 None:intergenic 20.0%
!! GAGAATATTTACAACTTATT+TGG - chr6_2:72424512-72424531 Msa0927860:CDS 20.0%
!!! CAAGATATAAGTTGATTATA+AGG + chr6_2:72424692-72424711 None:intergenic 20.0%
!! CTAATTATTATGCATAAACT+GGG + chr6_2:72424792-72424811 None:intergenic 20.0%
!! ACTAATTATTATGCATAAAC+TGG + chr6_2:72424793-72424812 None:intergenic 20.0%
!! TATATGAGACAATCATTATA+TGG + chr6_2:72425104-72425123 None:intergenic 20.0%
!! AGAATTAATTTATAACCACT+TGG + chr6_2:72426089-72426108 None:intergenic 20.0%
!!! TATTTGAAATGAAAGAATCA+TGG + chr6_2:72426299-72426318 None:intergenic 20.0%
!! TAATTGATCTGATTTCTAAT+TGG - chr6_2:72426434-72426453 Msa0927860:intron 20.0%
!! AATTGATCTGATTTCTAATT+GGG - chr6_2:72426435-72426454 Msa0927860:intron 20.0%
!! TTCGATGTAATTTCAATTTA+AGG + chr6_2:72427063-72427082 None:intergenic 20.0%
!!! TTTTATTGAGCTCTTTGTTT+CGG + chr6_2:72422150-72422169 None:intergenic 25.0%
!!! TTTTAATAAGCTTTGGTGTT+AGG - chr6_2:72422986-72423005 Msa0927860:CDS 25.0%
! CATAATTTATGCTTAGAGTT+TGG - chr6_2:72423204-72423223 Msa0927860:intron 25.0%
! GTATTTGTATTTATCTGCTA+AGG - chr6_2:72423584-72423603 Msa0927860:intron 25.0%
! TACAGAAATCATACCAAAAA+TGG - chr6_2:72423693-72423712 Msa0927860:intron 25.0%
! TCATAAACCCTCAAATAATA+AGG + chr6_2:72423957-72423976 None:intergenic 25.0%
! ACTATCACAATAAACTAGAA+AGG + chr6_2:72424010-72424029 None:intergenic 25.0%
!!! GAGGTTTTTAGTTTCTATTT+TGG - chr6_2:72424043-72424062 Msa0927860:intron 25.0%
! ATAATCAACTTATATCTTGC+AGG - chr6_2:72424693-72424712 Msa0927860:intron 25.0%
!!! TGTTGCAGATTTTAAAGAAA+GGG - chr6_2:72424864-72424883 Msa0927860:intron 25.0%
!! CATTTTATCCAACACAAAAA+CGG - chr6_2:72425528-72425547 Msa0927860:intron 25.0%
! TACAGGAATATGTTAATAGT+CGG - chr6_2:72425577-72425596 Msa0927860:intron 25.0%
!! TTTTATCCAACCCATAAAAA+AGG - chr6_2:72425618-72425637 Msa0927860:intron 25.0%
! TTTATCCAACCCATAAAAAA+GGG - chr6_2:72425619-72425638 Msa0927860:intron 25.0%
! TGTCATAAATGTTCAAAAGA+TGG + chr6_2:72425645-72425664 None:intergenic 25.0%
!! TCTTTTGAACATTTATGACA+AGG - chr6_2:72425645-72425664 Msa0927860:intron 25.0%
!! TCCTTTTATCACATTTTATC+TGG - chr6_2:72425685-72425704 Msa0927860:intron 25.0%
! ACCAGATAAAATGTGATAAA+AGG + chr6_2:72425689-72425708 None:intergenic 25.0%
!! ATTGTTTTCATGTCCTTTTT+AGG - chr6_2:72425790-72425809 Msa0927860:intron 25.0%
!!! ACTTGTTTGTTTTGAAAACT+CGG - chr6_2:72425892-72425911 Msa0927860:intron 25.0%
!!! TGCTTGTTTTTGTTTTTTGT+TGG - chr6_2:72425982-72426001 Msa0927860:intron 25.0%
! TAACCCATAAAAAAGCTAAT+GGG - chr6_2:72426250-72426269 Msa0927860:intron 25.0%
! CTTTGATTCTGCTAAAATTT+CGG - chr6_2:72426408-72426427 Msa0927860:intron 25.0%
!! TTTGTTATGAATAAGATGCA+TGG - chr6_2:72426506-72426525 Msa0927860:intron 25.0%
!! TGAATCAAAATCTGATTTGA+AGG - chr6_2:72426871-72426890 Msa0927860:intron 25.0%
!!! AAGGATTATTCATTTTGAGT+TGG - chr6_2:72426890-72426909 Msa0927860:intron 25.0%
!!! ACATCTCAAACACTTTTTTT+TGG + chr6_2:72426941-72426960 None:intergenic 25.0%
! TTCTATTCTTAAGTTTCCTA+GGG - chr6_2:72427263-72427282 Msa0927860:exon 25.0%
!! TAATTTGATGGATTAATCGG+TGG - chr6_2:72422402-72422421 Msa0927860:three_prime_UTR 30.0%
GTTTATACGAATGTTTCGAA+AGG - chr6_2:72422470-72422489 Msa0927860:three_prime_UTR 30.0%
TAAGTCTAAGGATTTGAATG+CGG - chr6_2:72422502-72422521 Msa0927860:three_prime_UTR 30.0%
TAGCTACAAAACAACTAACA+TGG + chr6_2:72422594-72422613 None:intergenic 30.0%
TTTATGCTTAGAGTTTGGTT+AGG - chr6_2:72423209-72423228 Msa0927860:intron 30.0%
CATAATTTATGCTTAGAGGT+TGG - chr6_2:72423246-72423265 Msa0927860:intron 30.0%
TGACATTGAATTGATCAAGT+AGG + chr6_2:72423277-72423296 None:intergenic 30.0%
!!! TTTTGATAAGCTTTGGTGTT+CGG - chr6_2:72423404-72423423 Msa0927860:intron 30.0%
TTAAGCACTCATGCTTAATT+TGG - chr6_2:72423544-72423563 Msa0927860:intron 30.0%
TAAGCACTCATGCTTAATTT+GGG - chr6_2:72423545-72423564 Msa0927860:intron 30.0%
TAACTCATTTCCTAAGCTTA+TGG + chr6_2:72423671-72423690 None:intergenic 30.0%
GCTTTATCCAATAGTTGAAA+AGG + chr6_2:72423775-72423794 None:intergenic 30.0%
TGATATCATAAACCTACCTA+TGG + chr6_2:72423860-72423879 None:intergenic 30.0%
TAGCTCAACCTTATTATTTG+AGG - chr6_2:72423946-72423965 Msa0927860:intron 30.0%
AGCTCAACCTTATTATTTGA+GGG - chr6_2:72423947-72423966 Msa0927860:intron 30.0%
TAAAAACCTCTTAGAAAGAG+AGG + chr6_2:72424033-72424052 None:intergenic 30.0%
! ATAAGCACTGTCATAATGTT+TGG - chr6_2:72424248-72424267 Msa0927860:CDS 30.0%
! TAAGCACTGTCATAATGTTT+GGG - chr6_2:72424249-72424268 Msa0927860:CDS 30.0%
ACTTTCATATAAGTTGTGAG+CGG + chr6_2:72424359-72424378 None:intergenic 30.0%
!! TATCTACAGTTGTTTTCAGT+AGG - chr6_2:72424538-72424557 Msa0927860:CDS 30.0%
! TTGATTATAAGGGTATGCTT+GGG + chr6_2:72424681-72424700 None:intergenic 30.0%
AGTGATTTAACTGTTAGTTG+AGG - chr6_2:72424810-72424829 Msa0927860:intron 30.0%
!! CTGTTGCAGATTTTAAAGAA+AGG - chr6_2:72424863-72424882 Msa0927860:intron 30.0%
!! GTTGCAGATTTTAAAGAAAG+GGG - chr6_2:72424865-72424884 Msa0927860:intron 30.0%
! AAAAGTCTTGTGCATTACAA+TGG + chr6_2:72424954-72424973 None:intergenic 30.0%
!! ATGGAATTCTTTAGAATGAC+AGG + chr6_2:72425085-72425104 None:intergenic 30.0%
GATTATGAAAGTCGTATTAC+AGG - chr6_2:72425143-72425162 Msa0927860:intron 30.0%
!! CAACCGTTATTTCTAAAGAA+GGG - chr6_2:72425289-72425308 Msa0927860:intron 30.0%
! TGTCCCTTCTTTAGAAATAA+CGG + chr6_2:72425295-72425314 None:intergenic 30.0%
! ATTTTATTCTCTGTAACCCT+GGG - chr6_2:72425370-72425389 Msa0927860:intron 30.0%
!! TTTATGGGTTGGATAAAATG+TGG + chr6_2:72425616-72425635 None:intergenic 30.0%
!!! AAAAGATGGCCCTTTTTTAT+GGG + chr6_2:72425631-72425650 None:intergenic 30.0%
!!! TGTTTTGAAAACTCGGTATT+CGG - chr6_2:72425899-72425918 Msa0927860:intron 30.0%
!!! GTTTTTGTTTTTTGTTGGCA+TGG - chr6_2:72425987-72426006 Msa0927860:intron 30.0%
TTTGATAAGCAGATTGAATG+TGG + chr6_2:72426217-72426236 None:intergenic 30.0%
CTAACCCATAAAAAAGCTAA+TGG - chr6_2:72426249-72426268 Msa0927860:intron 30.0%
!!! CTTCCCATTAGCTTTTTTAT+GGG + chr6_2:72426256-72426275 None:intergenic 30.0%
!!! ACTTCCCATTAGCTTTTTTA+TGG + chr6_2:72426257-72426276 None:intergenic 30.0%
ATGGAACATTTATAGAGACA+TGG + chr6_2:72426280-72426299 None:intergenic 30.0%
TATATCTGCATTTGCGTATA+TGG - chr6_2:72426374-72426393 Msa0927860:intron 30.0%
ACAATATGAAGCGTAAAACA+AGG - chr6_2:72426798-72426817 Msa0927860:intron 30.0%
!! AAAAGTGTTTGAGATGTTAC+TGG - chr6_2:72426944-72426963 Msa0927860:intron 30.0%
!!! TAAGGAGTTTTTTTTCTCTG+TGG + chr6_2:72427045-72427064 None:intergenic 30.0%
CTTCTATTCTTAAGTTTCCT+AGG - chr6_2:72427262-72427281 Msa0927860:CDS 30.0%
TCTATTCTTAAGTTTCCTAG+GGG - chr6_2:72427264-72427283 Msa0927860:exon 30.0%
! GGATTTCTTTTGCATTTGTA+GGG + chr6_2:72427362-72427381 None:intergenic 30.0%
! TGGATTTCTTTTGCATTTGT+AGG + chr6_2:72427363-72427382 None:intergenic 30.0%
TACAACAATGTCTCGTTCAT+TGG - chr6_2:72422209-72422228 Msa0927860:three_prime_UTR 35.0%
! TTTAGAATTTACGTACACGC+CGG + chr6_2:72422346-72422365 None:intergenic 35.0%
TCATTCCAGTATTTGCTTAG+AGG - chr6_2:72422541-72422560 Msa0927860:three_prime_UTR 35.0%
ACAAACCTCTAAGCAAATAC+TGG + chr6_2:72422549-72422568 None:intergenic 35.0%
AATTGTATATGTCTGTGTCG+TGG - chr6_2:72422683-72422702 Msa0927860:CDS 35.0%
AATAACCAACTTCTGATCGA+AGG + chr6_2:72423182-72423201 None:intergenic 35.0%
! GCATTAAGAGTTCTGATTGA+AGG + chr6_2:72423367-72423386 None:intergenic 35.0%
! ACAGACCTTTTGATAAGCTT+TGG - chr6_2:72423397-72423416 Msa0927860:intron 35.0%
GAACACCAAAGCTTATCAAA+AGG + chr6_2:72423405-72423424 None:intergenic 35.0%
GCTAAGGTATGCATTTATCA+AGG - chr6_2:72423600-72423619 Msa0927860:intron 35.0%
TATCACATGTCCATAAGCTT+AGG - chr6_2:72423658-72423677 Msa0927860:intron 35.0%
!! ACTGATAACTCAGCCATTTT+TGG + chr6_2:72423709-72423728 None:intergenic 35.0%
AATGGCTGAGTTATCAGTTA+TGG - chr6_2:72423711-72423730 Msa0927860:intron 35.0%
ATGGCTGAGTTATCAGTTAT+GGG - chr6_2:72423712-72423731 Msa0927860:intron 35.0%
ATTCAGTTAGCAATATCACG+TGG - chr6_2:72423749-72423768 Msa0927860:intron 35.0%
CATGGGAGAACTTTACAATT+GGG + chr6_2:72423902-72423921 None:intergenic 35.0%
AATTGTAAAGTTCTCCCATG+CGG - chr6_2:72423902-72423921 Msa0927860:intron 35.0%
TAAACTAGAAAGGCTAGGTA+GGG + chr6_2:72424000-72424019 None:intergenic 35.0%
ATAAACTAGAAAGGCTAGGT+AGG + chr6_2:72424001-72424020 None:intergenic 35.0%
CACAATAAACTAGAAAGGCT+AGG + chr6_2:72424005-72424024 None:intergenic 35.0%
CTTCTATAATCAAGACAACG+TGG + chr6_2:72424617-72424636 None:intergenic 35.0%
! GTTGATTATAAGGGTATGCT+TGG + chr6_2:72424682-72424701 None:intergenic 35.0%
TTTAAAGAAAGGGGAACTTC+AGG - chr6_2:72424874-72424893 Msa0927860:intron 35.0%
! CAATCATGCTGATAGTGTAA+GGG + chr6_2:72424994-72425013 None:intergenic 35.0%
! TCAATCATGCTGATAGTGTA+AGG + chr6_2:72424995-72425014 None:intergenic 35.0%
!! AGAAGCACTACCCTATAAAA+CGG - chr6_2:72425190-72425209 Msa0927860:intron 35.0%
! TCAATGGACACCGTTTTATA+GGG + chr6_2:72425203-72425222 None:intergenic 35.0%
TATAAAACGGTGTCCATTGA+GGG - chr6_2:72425203-72425222 Msa0927860:intron 35.0%
!! GCAACCGTTATTTCTAAAGA+AGG - chr6_2:72425288-72425307 Msa0927860:intron 35.0%
! TGTGTTGCTCAGTTATTTCA+TGG - chr6_2:72425343-72425362 Msa0927860:intron 35.0%
CAGGGTTACAGAGAATAAAA+TGG + chr6_2:72425371-72425390 None:intergenic 35.0%
! CATTTTATTCTCTGTAACCC+TGG - chr6_2:72425369-72425388 Msa0927860:intron 35.0%
!! AACATGATCCGTTTTTGTGT+TGG + chr6_2:72425539-72425558 None:intergenic 35.0%
TGAACATCTGTGATAGTTAC+AGG - chr6_2:72425560-72425579 Msa0927860:intron 35.0%
!!! CAAAAGATGGCCCTTTTTTA+TGG + chr6_2:72425632-72425651 None:intergenic 35.0%
AAGTTTGAGAAGTTGTTCGT+TGG - chr6_2:72425719-72425738 Msa0927860:intron 35.0%
! AATACAAGGCGCATTTTATC+TGG - chr6_2:72425758-72425777 Msa0927860:intron 35.0%
!! TCCTTTTTAGGCAAGCTTTT+GGG - chr6_2:72425802-72425821 Msa0927860:intron 35.0%
!! TTTTGGGTAGAATTTGGTCA+TGG - chr6_2:72425818-72425837 Msa0927860:intron 35.0%
TTTGGGTAGAATTTGGTCAT+GGG - chr6_2:72425819-72425838 Msa0927860:intron 35.0%
!!! TTGTTTTTTGTTGGCATGGT+TGG - chr6_2:72425991-72426010 Msa0927860:intron 35.0%
!!! TCTGGTTTGCTTGTTTTAGT+TGG - chr6_2:72426034-72426053 Msa0927860:intron 35.0%
!!! CTGGTTTGCTTGTTTTAGTT+GGG - chr6_2:72426035-72426054 Msa0927860:intron 35.0%
! CATGCATTTTCTGTAAGTTG+TGG - chr6_2:72426191-72426210 Msa0927860:intron 35.0%
TTCTTTCCATAAGTTGTGTC+TGG - chr6_2:72426351-72426370 Msa0927860:intron 35.0%
GATATACCAGACACAACTTA+TGG + chr6_2:72426360-72426379 None:intergenic 35.0%
! TGGGTTGCAGATTTTTGAAT+TGG - chr6_2:72426454-72426473 Msa0927860:intron 35.0%
TTTATCATTCAGCTCAAGCA+CGG + chr6_2:72426639-72426658 None:intergenic 35.0%
CAAAAGCAAACAATTTCGTC+TGG - chr6_2:72426662-72426681 Msa0927860:intron 35.0%
TTGAAGATGCTAAGTTGTAC+AGG - chr6_2:72426747-72426766 Msa0927860:intron 35.0%
TGAAGATGCTAAGTTGTACA+GGG - chr6_2:72426748-72426767 Msa0927860:intron 35.0%
! ATACGTGTGCCTATTTTGTT+AGG - chr6_2:72426995-72427014 Msa0927860:CDS 35.0%
CAAGACTCTCCTAACAAAAT+AGG + chr6_2:72427007-72427026 None:intergenic 35.0%
! CTATTTTGTTAGGAGAGTCT+TGG - chr6_2:72427005-72427024 Msa0927860:CDS 35.0%
CATCGAACGTATTTCATTAC+TGG - chr6_2:72427076-72427095 Msa0927860:intron 35.0%
! TCCAAGTATCCATGATTTTC+AGG - chr6_2:72427288-72427307 Msa0927860:five_prime_UTR 35.0%
TCCTGAAAATCATGGATACT+TGG + chr6_2:72427292-72427311 None:intergenic 35.0%
CAGATAAGTCCTGAAAATCA+TGG + chr6_2:72427300-72427319 None:intergenic 35.0%
!! GTTAATCGCTTTTGACCTAC+TGG + chr6_2:72422240-72422259 None:intergenic 40.0%
GTTGTTCGTCTCAAGAAACA+CGG - chr6_2:72422270-72422289 Msa0927860:three_prime_UTR 40.0%
!!! TCGGTGGTTTTGTAGTGAAA+AGG - chr6_2:72422418-72422437 Msa0927860:three_prime_UTR 40.0%
!! TGAAGTGTTGCAGTCACATA+CGG - chr6_2:72422448-72422467 Msa0927860:three_prime_UTR 40.0%
AGGTGTTCTTGCTAAGTCTA+AGG - chr6_2:72422490-72422509 Msa0927860:three_prime_UTR 40.0%
GTAGCTATGACACACTGATA+TGG - chr6_2:72422607-72422626 Msa0927860:CDS 40.0%
AACATATCAATGCCCCGTTT+AGG + chr6_2:72422826-72422845 None:intergenic 40.0%
!! GGGCATTGATATGTTGATAC+TGG - chr6_2:72422831-72422850 Msa0927860:CDS 40.0%
ATAGCTATGAAACACTGTCG+TGG - chr6_2:72423312-72423331 Msa0927860:intron 40.0%
! CAGTGTCCTAAAAGTGTAGT+TGG + chr6_2:72423338-72423357 None:intergenic 40.0%
!!! CAACTACACTTTTAGGACAC+TGG - chr6_2:72423336-72423355 Msa0927860:intron 40.0%
! CACTCATGCTTAATTTGGGT+TGG - chr6_2:72423549-72423568 Msa0927860:intron 40.0%
! CAGTTATGGGCTATACATCA+AGG - chr6_2:72423725-72423744 Msa0927860:intron 40.0%
TATGGAACTGATGTGTAGCA+GGG + chr6_2:72423842-72423861 None:intergenic 40.0%
TACACATCAGTTCCATAGGT+AGG - chr6_2:72423845-72423864 Msa0927860:intron 40.0%
TACAATTGGGACTTAAGTCG+CGG + chr6_2:72423889-72423908 None:intergenic 40.0%
GCATGGGAGAACTTTACAAT+TGG + chr6_2:72423903-72423922 None:intergenic 40.0%
GATAGTCCTCTCTTTCTAAG+AGG - chr6_2:72424024-72424043 Msa0927860:intron 40.0%
ATTTGCAGCTTGAGTGCTTA+AGG + chr6_2:72424202-72424221 None:intergenic 40.0%
TTAAGCACTCAAGCTGCAAA+TGG - chr6_2:72424201-72424220 Msa0927860:CDS 40.0%
TAAGCACTCAAGCTGCAAAT+GGG - chr6_2:72424202-72424221 Msa0927860:CDS 40.0%
ACACTCACTTAGGGTACATA+TGG + chr6_2:72424484-72424503 None:intergenic 40.0%
CTTCCAAACACACTCACTTA+GGG + chr6_2:72424493-72424512 None:intergenic 40.0%
TCTTCCAAACACACTCACTT+AGG + chr6_2:72424494-72424513 None:intergenic 40.0%
AATGCTGTCTAGTCAGTTCA+GGG - chr6_2:72424919-72424938 Msa0927860:intron 40.0%
! AGTCTTGTGCATTACAATGG+TGG + chr6_2:72424951-72424970 None:intergenic 40.0%
TGTTTGGATCAACAGCGAAA+TGG + chr6_2:72425036-72425055 None:intergenic 40.0%
! CTCAATGGACACCGTTTTAT+AGG + chr6_2:72425204-72425223 None:intergenic 40.0%
CTATAAAACGGTGTCCATTG+AGG - chr6_2:72425202-72425221 Msa0927860:intron 40.0%
! CTCAGCTTTTCCAAAAGGAT+AGG + chr6_2:72425258-72425277 None:intergenic 40.0%
!! CTTCTAGAACAGAAAACCCA+GGG + chr6_2:72425389-72425408 None:intergenic 40.0%
!! CGCATTTTATCTGGTTTCTC+AGG - chr6_2:72425767-72425786 Msa0927860:intron 40.0%
!! GTCCTTTTTAGGCAAGCTTT+TGG - chr6_2:72425801-72425820 Msa0927860:intron 40.0%
ACCCAAAAGCTTGCCTAAAA+AGG + chr6_2:72425806-72425825 None:intergenic 40.0%
!! GCAAGCTTTTGGGTAGAATT+TGG - chr6_2:72425812-72425831 Msa0927860:intron 40.0%
!! AGAGTGTTTTCCAGCTAACA+AGG + chr6_2:72426017-72426036 None:intergenic 40.0%
TTGTTAGCTGGAAAACACTC+TGG - chr6_2:72426016-72426035 Msa0927860:intron 40.0%
!!! TTGTTTTAGTTGGGTCTGCT+AGG - chr6_2:72426044-72426063 Msa0927860:intron 40.0%
GCTAGGTTACACCTTGTATT+TGG - chr6_2:72426061-72426080 Msa0927860:intron 40.0%
! ACCTTGTATTTGGAACCAAG+TGG - chr6_2:72426071-72426090 Msa0927860:intron 40.0%
ACCACTTGGTTCCAAATACA+AGG + chr6_2:72426075-72426094 None:intergenic 40.0%
! CAGATTTTTGAATTGGAGCC+TGG - chr6_2:72426461-72426480 Msa0927860:intron 40.0%
TGACAATCCTTATACAGACC+AGG + chr6_2:72426482-72426501 None:intergenic 40.0%
TCTTGCTCACTCTCTTTATG+TGG - chr6_2:72426541-72426560 Msa0927860:intron 40.0%
CTCACTCTCTTTATGTGGAT+GGG - chr6_2:72426546-72426565 Msa0927860:intron 40.0%
TCACTCTCTTTATGTGGATG+GGG - chr6_2:72426547-72426566 Msa0927860:intron 40.0%
! TGTGGATTACAATGATCACG+AGG - chr6_2:72426577-72426596 Msa0927860:intron 40.0%
ACGGATTCAGAAGTTCTTTG+GGG + chr6_2:72426620-72426639 None:intergenic 40.0%
CACGGATTCAGAAGTTCTTT+GGG + chr6_2:72426621-72426640 None:intergenic 40.0%
!!! GTGTTGCACTTGTTTTGCTT+TGG + chr6_2:72426713-72426732 None:intergenic 40.0%
!! ACTCTTCTTCAGATAGTGGA+GGG + chr6_2:72426829-72426848 None:intergenic 40.0%
TTACTGGTGACAGATTTGTG+CGG - chr6_2:72427092-72427111 Msa0927860:intron 40.0%
!! CGTTCATTGGTTCAACCAGT+AGG - chr6_2:72422222-72422241 Msa0927860:three_prime_UTR 45.0%
ACCCTAACACCGTTCTTTCA+TGG - chr6_2:72422316-72422335 Msa0927860:three_prime_UTR 45.0%
! GCCATGAAAGAACGGTGTTA+GGG + chr6_2:72422320-72422339 None:intergenic 45.0%
AAGGATTTGAATGCGGCGTT+TGG - chr6_2:72422509-72422528 Msa0927860:three_prime_UTR 45.0%
! TTCTGATCGAAAGCGTGTTC+AGG + chr6_2:72422729-72422748 None:intergenic 45.0%
! ACGCTTTCGATCAGAAGTGT+CGG - chr6_2:72422733-72422752 Msa0927860:CDS 45.0%
!! ATGAAGCACTGACACAGACA+CGG - chr6_2:72422797-72422816 Msa0927860:CDS 45.0%
CACAGACACGGAAACCTAAA+CGG - chr6_2:72422809-72422828 Msa0927860:CDS 45.0%
ACAGACACGGAAACCTAAAC+GGG - chr6_2:72422810-72422829 Msa0927860:CDS 45.0%
TGTCGCACACTAACATGTGT+AGG - chr6_2:72422897-72422916 Msa0927860:CDS 45.0%
ATGCCTTCAATCAGACGAGT+CGG - chr6_2:72422929-72422948 Msa0927860:CDS 45.0%
TGTCAGTGTCGTGTCTATGT+TGG - chr6_2:72423129-72423148 Msa0927860:intron 45.0%
TATGTTGGACACTGACGTGT+AGG - chr6_2:72423144-72423163 Msa0927860:intron 45.0%
ACACACCTTCGATCAGAAGT+TGG - chr6_2:72423174-72423193 Msa0927860:intron 45.0%
! TCGTGGCCAACTACACTTTT+AGG - chr6_2:72423329-72423348 Msa0927860:intron 45.0%
! CACGTGGCCTTTTCAACTAT+TGG - chr6_2:72423765-72423784 Msa0927860:intron 45.0%
! TGTTGGATAAGGTTGATCGC+AGG + chr6_2:72423813-72423832 None:intergenic 45.0%
GCGATCAACCTTATCCAACA+AGG - chr6_2:72423813-72423832 Msa0927860:intron 45.0%
CTATGGAACTGATGTGTAGC+AGG + chr6_2:72423843-72423862 None:intergenic 45.0%
CTGCTACACATCAGTTCCAT+AGG - chr6_2:72423841-72423860 Msa0927860:intron 45.0%
!! TAGGTAGGGTAATGGAATCG+GGG + chr6_2:72423986-72424005 None:intergenic 45.0%
!! CTAGGTAGGGTAATGGAATC+GGG + chr6_2:72423987-72424006 None:intergenic 45.0%
!! GCTAGGTAGGGTAATGGAAT+CGG + chr6_2:72423988-72424007 None:intergenic 45.0%
AGAAAGGCTAGGTAGGGTAA+TGG + chr6_2:72423994-72424013 None:intergenic 45.0%
GTACCCTAAGTGAGTGTGTT+TGG - chr6_2:72424487-72424506 Msa0927860:CDS 45.0%
! TAAGGGTATGCTTGGGACAT+GGG + chr6_2:72424674-72424693 None:intergenic 45.0%
! ATAAGGGTATGCTTGGGACA+TGG + chr6_2:72424675-72424694 None:intergenic 45.0%
!! TTCAGGTTGCTGGTAAAGAG+AGG - chr6_2:72424891-72424910 Msa0927860:intron 45.0%
! TCAGGTTGCTGGTAAAGAGA+GGG - chr6_2:72424892-72424911 Msa0927860:intron 45.0%
CAATGCTGTCTAGTCAGTTC+AGG - chr6_2:72424918-72424937 Msa0927860:intron 45.0%
CATGATTGAACGCCTCATGA+GGG - chr6_2:72425006-72425025 Msa0927860:intron 45.0%
CGAAATGGATATCCCTCATG+AGG + chr6_2:72425021-72425040 None:intergenic 45.0%
ACAAGATACCTGCTTCTTGG+AGG + chr6_2:72425062-72425081 None:intergenic 45.0%
AGGACAAGATACCTGCTTCT+TGG + chr6_2:72425065-72425084 None:intergenic 45.0%
GAAAGTCGTATTACAGGCTC+TGG - chr6_2:72425149-72425168 Msa0927860:intron 45.0%
!!! GGAGGAAGTACCTATCCTTT+TGG - chr6_2:72425245-72425264 Msa0927860:intron 45.0%
! ACTCGCTCAGCTTTTCCAAA+AGG + chr6_2:72425263-72425282 None:intergenic 45.0%
!! TTTTGGAAAAGCTGAGCGAG+TGG - chr6_2:72425262-72425281 Msa0927860:intron 45.0%
!! GCTTCTAGAACAGAAAACCC+AGG + chr6_2:72425390-72425409 None:intergenic 45.0%
! CAAGCCTTATGCCACTAAGT+GGG - chr6_2:72425444-72425463 Msa0927860:intron 45.0%
! AAGCCTTATGCCACTAAGTG+GGG - chr6_2:72425445-72425464 Msa0927860:intron 45.0%
!!! GATGGCCCTTTTTTATGGGT+TGG + chr6_2:72425627-72425646 None:intergenic 45.0%
GTAGAATTTGGTCATGGGCA+GGG - chr6_2:72425824-72425843 Msa0927860:intron 45.0%
TAGAATTTGGTCATGGGCAG+GGG - chr6_2:72425825-72425844 Msa0927860:intron 45.0%
GCAGGGGTTAATCTTGTGTT+CGG - chr6_2:72425841-72425860 Msa0927860:intron 45.0%
CAGGGGTTAATCTTGTGTTC+GGG - chr6_2:72425842-72425861 Msa0927860:intron 45.0%
! CGGGTGCAGTAGTTTTTCTT+AGG - chr6_2:72425861-72425880 Msa0927860:intron 45.0%
AAAACTCGGTATTCGGTCCA+AGG - chr6_2:72425906-72425925 Msa0927860:intron 45.0%
!! ATTGGACCCCTTGGATTAGT+CGG + chr6_2:72425933-72425952 None:intergenic 45.0%
ACAGCGCGCAAATGAGTATT+TGG + chr6_2:72426147-72426166 None:intergenic 45.0%
ATTGGAGCCTGGTCTGTATA+AGG - chr6_2:72426472-72426491 Msa0927860:intron 45.0%
GCTCACTCTCTTTATGTGGA+TGG - chr6_2:72426545-72426564 Msa0927860:intron 45.0%
!! TCAGAAGTTCTTTGGGGCAA+TGG + chr6_2:72426614-72426633 None:intergenic 45.0%
GCACGGATTCAGAAGTTCTT+TGG + chr6_2:72426622-72426641 None:intergenic 45.0%
TTTGGTTGTTGTCCCTCAGT+AGG + chr6_2:72426695-72426714 None:intergenic 45.0%
! CACTCTTCTTCAGATAGTGG+AGG + chr6_2:72426830-72426849 None:intergenic 45.0%
GTGCACTCTTCTTCAGATAG+TGG + chr6_2:72426833-72426852 None:intergenic 45.0%
! AGAAGAGTGCACAGCAGATA+TGG - chr6_2:72426841-72426860 Msa0927860:intron 45.0%
CGCCATGAAAGAACGGTGTT+AGG + chr6_2:72422321-72422340 None:intergenic 50.0%
ACCGTTCTTTCATGGCGTTC+CGG - chr6_2:72422324-72422343 Msa0927860:three_prime_UTR 50.0%
CAGACACGGAAACCTAAACG+GGG - chr6_2:72422811-72422830 Msa0927860:CDS 50.0%
! CGTCTGATTGAAGGCATGTC+TGG + chr6_2:72422926-72422945 None:intergenic 50.0%
! CTTCTGATCGAAGGTGTGTC+CGG + chr6_2:72423173-72423192 None:intergenic 50.0%
TCGCAGGCAGCTAATGAACT+AGG + chr6_2:72423797-72423816 None:intergenic 50.0%
! CAGGGCATCCTTGTTGGATA+AGG + chr6_2:72423824-72423843 None:intergenic 50.0%
!! AGGTAGGGTAATGGAATCGG+GGG + chr6_2:72423985-72424004 None:intergenic 50.0%
CACTCAAGCTGCAAATGGGT+TGG - chr6_2:72424206-72424225 Msa0927860:CDS 50.0%
!! AAAGGGGAACTTCAGGTTGC+TGG - chr6_2:72424881-72424900 Msa0927860:intron 50.0%
!! AGTGTAAGGGCGCTTAGTCT+CGG + chr6_2:72424981-72425000 None:intergenic 50.0%
GCATGATTGAACGCCTCATG+AGG - chr6_2:72425005-72425024 Msa0927860:intron 50.0%
!! TGCTTCTTGGAGGTGCTGTT+TGG + chr6_2:72425052-72425071 None:intergenic 50.0%
AAACAGCACCTCCAAGAAGC+AGG - chr6_2:72425051-72425070 Msa0927860:intron 50.0%
!! ACAGGCTCTGGAGTTGATTC+AGG - chr6_2:72425161-72425180 Msa0927860:intron 50.0%
GATAGGTACTTCCTCCTCAG+GGG + chr6_2:72425241-72425260 None:intergenic 50.0%
GGATAGGTACTTCCTCCTCA+GGG + chr6_2:72425242-72425261 None:intergenic 50.0%
AGGATAGGTACTTCCTCCTC+AGG + chr6_2:72425243-72425262 None:intergenic 50.0%
CCACTTAGTGGCATAAGGCT+TGG + chr6_2:72425446-72425465 None:intergenic 50.0%
! CCAAGCCTTATGCCACTAAG+TGG - chr6_2:72425443-72425462 Msa0927860:intron 50.0%
CAACCCCACTTAGTGGCATA+AGG + chr6_2:72425451-72425470 None:intergenic 50.0%
TTAGTGGCAACCCCACTTAG+TGG + chr6_2:72425458-72425477 None:intergenic 50.0%
TAAGTGGGGTTGCCACTAAG+TGG - chr6_2:72425459-72425478 Msa0927860:intron 50.0%
AAGTGGGGTTGCCACTAAGT+GGG - chr6_2:72425460-72425479 Msa0927860:intron 50.0%
ATGTAGCCAACCCCACTTAG+TGG + chr6_2:72425474-72425493 None:intergenic 50.0%
GGTAGAATTTGGTCATGGGC+AGG - chr6_2:72425823-72425842 Msa0927860:intron 50.0%
TCCAAGGACCGACTAATCCA+AGG - chr6_2:72425922-72425941 Msa0927860:intron 50.0%
CCAAGGACCGACTAATCCAA+GGG - chr6_2:72425923-72425942 Msa0927860:intron 50.0%
CAAGGACCGACTAATCCAAG+GGG - chr6_2:72425924-72425943 Msa0927860:intron 50.0%
TGTGGATGGGGATACTCATG+TGG - chr6_2:72426559-72426578 Msa0927860:intron 50.0%
TCTGGACCTAAGCCTACTGA+GGG - chr6_2:72426680-72426699 Msa0927860:intron 50.0%
TGTTGTCCCTCAGTAGGCTT+AGG + chr6_2:72426689-72426708 None:intergenic 50.0%
TGTGCGGTTCTGCTTTCTCT+TGG - chr6_2:72427108-72427127 Msa0927860:intron 50.0%
GGTTCTGCTTTCTCTTGGTC+TGG - chr6_2:72427113-72427132 Msa0927860:intron 50.0%
CATGGATACTTGGATCCCCT+AGG + chr6_2:72427282-72427301 None:intergenic 50.0%
GCCGGAACGCCATGAAAGAA+CGG + chr6_2:72422328-72422347 None:intergenic 55.0%
GTTAGTGTGCGACACACACG+TGG + chr6_2:72422891-72422910 None:intergenic 55.0%
!! GCACCGACTCGTCTGATTGA+AGG + chr6_2:72422935-72422954 None:intergenic 55.0%
!! TCAGACGAGTCGGTGCTGTA+AGG - chr6_2:72422939-72422958 Msa0927860:CDS 55.0%
GACACTGACGTGTAGGACAC+CGG - chr6_2:72423151-72423170 Msa0927860:intron 55.0%
! GTGTAGCAGGGCATCCTTGT+TGG + chr6_2:72423830-72423849 None:intergenic 55.0%
GTTCTCCCATGCGGATGCAT+TGG - chr6_2:72423911-72423930 Msa0927860:intron 55.0%
CTTCGCCAATGCATCCGCAT+GGG + chr6_2:72423919-72423938 None:intergenic 55.0%
TCTTCGCCAATGCATCCGCA+TGG + chr6_2:72423920-72423939 None:intergenic 55.0%
! GCGGATGCATTGGCGAAGAT+TGG - chr6_2:72423921-72423940 Msa0927860:intron 55.0%
!! GTGTAAGGGCGCTTAGTCTC+GGG + chr6_2:72424980-72424999 None:intergenic 55.0%
GGAAAAGCTGAGCGAGTGGA+AGG - chr6_2:72425266-72425285 Msa0927860:intron 55.0%
AGTGGGGTTGCCACTAAGTG+GGG - chr6_2:72425461-72425480 Msa0927860:intron 55.0%
!! CCCTTGGATTAGTCGGTCCT+TGG + chr6_2:72425926-72425945 None:intergenic 55.0%
!! GCATGGTTGGCCTTGTTAGC+TGG - chr6_2:72426004-72426023 Msa0927860:intron 55.0%
!! GTTCTTTGGGGCAATGGTGC+AGG + chr6_2:72426608-72426627 None:intergenic 55.0%
GTCTGGACCTAAGCCTACTG+AGG - chr6_2:72426679-72426698 Msa0927860:intron 55.0%
GGGAACACCACAAGAGTGAG+TGG - chr6_2:72426768-72426787 Msa0927860:intron 55.0%
! GCTTGTGCCACTCACTCTTG+TGG + chr6_2:72426778-72426797 None:intergenic 55.0%
GGGTTGCCACTAAGTGGGGT+TGG - chr6_2:72425465-72425484 Msa0927860:intron 60.0%
CCAATCCCACCACCCACATG+CGG - chr6_2:72425948-72425967 Msa0927860:intron 60.0%
CAATCCCACCACCCACATGC+GGG - chr6_2:72425949-72425968 Msa0927860:intron 60.0%
AATCCCACCACCCACATGCG+GGG - chr6_2:72425950-72425969 Msa0927860:intron 60.0%
GCAGCAGCGCGTACCCTCAA+TGG + chr6_2:72425219-72425238 None:intergenic 65.0%
!! GGTGGTGGGATTGGACCCCT+TGG + chr6_2:72425942-72425961 None:intergenic 65.0%
!! CCGCATGTGGGTGGTGGGAT+TGG + chr6_2:72425951-72425970 None:intergenic 65.0%
ATCCCACCACCCACATGCGG+GGG - chr6_2:72425951-72425970 Msa0927860:intron 65.0%
TCCCACCACCCACATGCGGG+GGG - chr6_2:72425952-72425971 Msa0927860:intron 70.0%
ACCCCCCGCATGTGGGTGGT+GGG + chr6_2:72425956-72425975 None:intergenic 70.0%
ACCACCCACATGCGGGGGGT+GGG - chr6_2:72425956-72425975 Msa0927860:intron 70.0%
AACCCCCACCCCCCGCATGT+GGG + chr6_2:72425963-72425982 None:intergenic 70.0%
GGTACGCGCTGCTGCCCCTG+AGG - chr6_2:72425224-72425243 Msa0927860:intron 75.0%
ACGCGCTGCTGCCCCTGAGG+AGG - chr6_2:72425227-72425246 Msa0927860:intron 75.0%
CACCCCCCGCATGTGGGTGG+TGG + chr6_2:72425957-72425976 None:intergenic 75.0%
CACCACCCACATGCGGGGGG+TGG - chr6_2:72425955-72425974 Msa0927860:intron 75.0%
CCACCCACATGCGGGGGGTG+GGG - chr6_2:72425957-72425976 Msa0927860:intron 75.0%
CACCCACATGCGGGGGGTGG+GGG - chr6_2:72425958-72425977 Msa0927860:intron 75.0%
CAACCCCCACCCCCCGCATG+TGG + chr6_2:72425964-72425983 None:intergenic 75.0%
! CCCCACCCCCCGCATGTGGG+TGG + chr6_2:72425960-72425979 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 72422108 72427389 72422108 ID=Msa0927860;Name=Msa0927860
chr6_2 mRNA 72422108 72427389 72422108 ID=Msa0927860-mRNA-1;Parent=Msa0927860;Name=Msa0927860-mRNA-1;_AED=0.04;_eAED=0.04;_QI=108|0.75|0.6|1|0.75|0.6|5|482|349
chr6_2 exon 72422108 72423033 72422108 ID=Msa0927860-mRNA-1:exon:12302;Parent=Msa0927860-mRNA-1
chr6_2 exon 72424165 72424332 72424165 ID=Msa0927860-mRNA-1:exon:12301;Parent=Msa0927860-mRNA-1
chr6_2 exon 72424425 72424612 72424425 ID=Msa0927860-mRNA-1:exon:12300;Parent=Msa0927860-mRNA-1
chr6_2 exon 72426949 72427064 72426949 ID=Msa0927860-mRNA-1:exon:12299;Parent=Msa0927860-mRNA-1
chr6_2 exon 72427148 72427389 72427148 ID=Msa0927860-mRNA-1:exon:12298;Parent=Msa0927860-mRNA-1
chr6_2 five_prime_UTR 72427282 72427389 72427282 ID=Msa0927860-mRNA-1:five_prime_utr;Parent=Msa0927860-mRNA-1
chr6_2 CDS 72427148 72427281 72427148 ID=Msa0927860-mRNA-1:cds;Parent=Msa0927860-mRNA-1
chr6_2 CDS 72426949 72427064 72426949 ID=Msa0927860-mRNA-1:cds;Parent=Msa0927860-mRNA-1
chr6_2 CDS 72424425 72424612 72424425 ID=Msa0927860-mRNA-1:cds;Parent=Msa0927860-mRNA-1
chr6_2 CDS 72424165 72424332 72424165 ID=Msa0927860-mRNA-1:cds;Parent=Msa0927860-mRNA-1
chr6_2 CDS 72422590 72423033 72422590 ID=Msa0927860-mRNA-1:cds;Parent=Msa0927860-mRNA-1
chr6_2 three_prime_UTR 72422108 72422589 72422108 ID=Msa0927860-mRNA-1:three_prime_utr;Parent=Msa0927860-mRNA-1
Gene Sequence

>Msa0927860

ATGTCTCGTTCATTGGTTCAACCAGTAGGTCAAAAGCGATTAACAAACGTAGCAGTTGTTCGTCTCAAGAAACACGGCATGCGTTTCGAAATCGCTTGTTACCCTAACACCGTTCTTTCATGGCGTTCCGGCGTTGAAAAGGATATTGATGAAGTGTTGCAGTCACATACGGTTTATACGAATGTTTCGAAAGGTGTTCTTGCTAAGTCTAAGGATTTGAATGCGGCGTTTGGTACTGATGATCATTCCAGGGAACTTCAGGTTGCTGGTAAAGAGAGGGAGTCAATGCTGTCTAGTCAGTTCAGGGACATAGCCACCATTGTAATGCACAAGACTTTTAATCCCGAGACTAAGCGCCCTTACACTATCAGCATGATTGAACGCCTCATGAGGGATATCCATTTCGCTGTTGATCCAAACAGCACCTCCAAGAAGCAGGCTCTGGAGTTGATTCAGGAGCTTCAGAAGCACTACCCTATAAAACGGTGTCCATTGAGGGTACGCGCTGCTGCCCCTGAGGAGGAAGTACCTATCCTTTTGGAAAAGCTGAGCGAGTGGAAGGCAACCGTTATTTCTAAAGAAGGGACAGCTGCTCAGCTATCTGTTATTTTTGAATTGGAGCCTGGTCTGTATAAGGATTGTCACGACTTTGTTATGAATAAGATGCATGGAAGATTTGAAGTTCTTGCTCACTCTCTTTATGTGGATGGGGATACTCATGTGGATTACAATGATCACGAGGACACGCCTGCACCATTGCCCCAAAGAACTTCTGAATCCGTGCTTGAGCTGAATGATAAACTTCAAAAGCAAACAATTTCGTCTGGACCTAAGCCTACTGAGGGACAACAACCAAAGCAAAACAAGTGCAACACATGTGATGCTTGTTTTGAAGATGCTAAGTTGTACAGGGAACACCACAAGAGTGAGTGGCACAAGCACAATATGAAGCGTAAAACAAGGCAACTCCCTCCACTATCTGAAGAAGAGTGCACAGCAGATATGGAATTGTTTGAATCAAAATCTGATTTGAAGGATTATTCATTTTGA
Protein sequence

>Msa0927860

MSRSLVQPVGQKRLTNVAVVRLKKHGMRFEIACYPNTVLSWRSGVEKDIDEVLQSHTVYTNVSKGVLAKSKDLNAAFGTDDHSRELQVAGKERESMLSSQFRDIATIVMHKTFNPETKRPYTISMIERLMRDIHFAVDPNSTSKKQALELIQELQKHYPIKRCPLRVRAAAPEEEVPILLEKLSEWKATVISKEGTAAQLSVIFELEPGLYKDCHDFVMNKMHGRFEVLAHSLYVDGDTHVDYNDHEDTPAPLPQRTSESVLELNDKLQKQTISSGPKPTEGQQPKQNKCNTCDACFEDAKLYREHHKSEWHKHNMKRKTRQLPPLSEEECTADMELFESKSDLKDYSF*