AlfalfaGEDB | Msa0928190

M. sativa cultivar zhongmu-4 / Msa0928190

KEGG: K14514
GO: -
PFAM: PF04873.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0928190	KEH26454.1	82.116	671	94	7	1	655	1	661	0.0	1081

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0928190	sp\|O24606\|EIN3_ARATH	39.960	498	239	12	31	483	37	519	2.04e-103	331

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa0928190	TF	EIL

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0928190	MtrunA17_Chr6g0476301	83.287	359	42	4	91	438	1	352	0.0	597
Msa0928190	MtrunA17_Chr6g0473191	84.122	296	37	2	91	376	1	296	1.94e-175	501
Msa0928190	MtrunA17_Chr6g0476291	85.926	270	37	1	91	359	1	270	5.98e-165	473
Msa0928190	MtrunA17_Chr3g0080401	50.138	363	140	8	91	440	1	335	1.52e-109	334
Msa0928190	MtrunA17_Chr3g0118361	55.517	290	114	5	42	323	51	333	4.52e-109	343
Msa0928190	MtrunA17_Chr5g0440591	50.779	321	147	4	4	318	14	329	1.99e-107	338
Msa0928190	MtrunA17_Chr2g0329151	53.184	267	114	3	32	290	27	290	1.03e-94	305
Msa0928190	MtrunA17_Chr3g0124291	51.550	258	103	6	43	287	32	280	4.73e-84	271
Msa0928190	MtrunA17_Chr8g0382561	47.566	267	131	5	29	287	6	271	3.64e-76	251
Msa0928190	MtrunA17_Chr7g0260281	49.231	65	33	0	80	144	1	65	9.18e-17	77.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0928190	AT3G20770.1	39.960	498	239	12	31	483	37	519	2.08e-104	331
Msa0928190	AT2G27050.1	40.085	469	217	8	39	462	45	494	2.41e-104	329
Msa0928190	AT1G73730.2	51.493	268	117	3	31	290	14	276	3.00e-90	291
Msa0928190	AT1G73730.1	51.493	268	117	3	31	290	26	288	3.10e-90	292
Msa0928190	AT5G10120.1	49.618	262	124	3	34	287	14	275	1.63e-85	276
Msa0928190	AT5G65100.1	45.357	280	123	4	38	291	33	308	5.25e-78	259
Msa0928190	AT5G21120.2	47.082	257	121	3	48	291	60	314	4.14e-73	245
Msa0928190	AT5G21120.3	47.082	257	121	3	48	291	53	307	6.31e-73	244
Msa0928190	AT5G21120.1	47.082	257	121	3	48	291	53	307	6.31e-73	244

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Find 123 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTTCTATGGTCAACAA+GGG	0.632348	6_2:+73202779	Msa0928190:CDS
AAAGCCTCATGATCTGAAGA+AGG	0.566749	6_2:+73200892	Msa0928190:CDS
AAATTTCTATGGTCAACAAG+GGG	0.633963	6_2:+73202780	Msa0928190:CDS
AACAACCAATTTCAAATGGT+TGG	0.377578	6_2:+73201406	Msa0928190:CDS
AACAAGAGAAAACGTGAACT+TGG	0.466849	6_2:+73201253	Msa0928190:CDS
AACAATGCAAAACAAGATAA+AGG	0.381513	6_2:+73199687	Msa0928190:CDS
AACAATGCAGGTAATTACTC+AGG	0.576216	6_2:+73202322	Msa0928190:intron
AAGAGACAATACTACAACAT+TGG	0.489191	6_2:+73199824	Msa0928190:CDS
AAGGCATTCCTCCACCATGG+TGG	0.706316	6_2:+73200801	Msa0928190:CDS
AAGTAATTATGTGCTTGTTG+AGG	0.574583	6_2:+73201126	Msa0928190:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATGCATCCCAATGTTTATAA+TGG	+	chr6_2:73199630-73199649	Msa0928190:CDS	30.0%
GATAGCACCATTATAAACAT+TGG	-	chr6_2:73199640-73199659	None:intergenic	30.0%
TGCAAAACAAGATAAAGGAA+AGG	+	chr6_2:73199692-73199711	Msa0928190:CDS	30.0%
AAGGAAAAAGTAGAAGAAGA+TGG	+	chr6_2:73199711-73199730	Msa0928190:CDS	30.0%
GAAAAAAGAGCTAACTATTG+AGG	+	chr6_2:73199737-73199756	Msa0928190:CDS	30.0%
AATGCTGCTAAAAAAGATGA+AGG	+	chr6_2:73199788-73199807	Msa0928190:CDS	30.0%
AAGAGACAATACTACAACAT+TGG	+	chr6_2:73199824-73199843	Msa0928190:CDS	30.0%
ATACTACAACATTGGAACAA+AGG	+	chr6_2:73199832-73199851	Msa0928190:CDS	30.0%
ACAAAGGAAAAGAAAGACAA+TGG	+	chr6_2:73199848-73199867	Msa0928190:CDS	30.0%
TGATAGAAGGGAACTTAATA+TGG	-	chr6_2:73200732-73200751	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_2	gene	73199630	73203017	73199630	ID=Msa0928190;Name=Msa0928190
chr6_2	mRNA	73199630	73203017	73199630	ID=Msa0928190-mRNA-1;Parent=Msa0928190;Name=Msa0928190-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0\|0\|0\|1\|1\|1\|3\|0\|665
chr6_2	exon	73199630	73199895	73199630	ID=Msa0928190-mRNA-1:exon:12479;Parent=Msa0928190-mRNA-1
chr6_2	exon	73200478	73201523	73200478	ID=Msa0928190-mRNA-1:exon:12480;Parent=Msa0928190-mRNA-1
chr6_2	exon	73202332	73203017	73202332	ID=Msa0928190-mRNA-1:exon:12481;Parent=Msa0928190-mRNA-1
chr6_2	CDS	73199630	73199895	73199630	ID=Msa0928190-mRNA-1:cds;Parent=Msa0928190-mRNA-1
chr6_2	CDS	73200478	73201523	73200478	ID=Msa0928190-mRNA-1:cds;Parent=Msa0928190-mRNA-1
chr6_2	CDS	73202332	73203017	73202332	ID=Msa0928190-mRNA-1:cds;Parent=Msa0928190-mRNA-1

Gene Sequence

>Msa0928190

ATGCATCCCAATGTTTATAATGGTGCTATCGCTAACCCTTCAAGGGGAGAAGCTTCAAACAATGCAAAACAAGATAAAGGAAAGGAAAAAGTAGAAGAAGATGGTGAGAAAAAAGAGCTAACTATTGAGGAACTAGAGGCAAAGATATCTAAAGATAAAATGCTGCTAAAAAAGATGAAGGAAGAAAGAAGTAAAAGAGACAATACTACAACATTGGAACAAAGGAAAAGAAAGACAATGGCTCGTGCACAAGAGCGTGTATTAAGGTACATGTTAAAGATGATGGAAGTTTGTGATGCTCGTGGCTTCATCTATGGAGTAATACCTCACGAGGGCAAACCAATGAGTGGTTCATCAGAAAATTTACGAGGCTGGTGGAAAGACATAGTTAAATTCGACAAAAACGGTCCAGCGGCAATTGCTAAATATGAAGCGGAAAATGCCATTACAACAACAAATTATCAAAAGTCGAATGGTGAACCAATTACATTTGATTTACTGAATGAACTACCTGACACCATATTAAGTTCCCTTCTATCATCATTAGTGCCGCATTGCGACCCACCACAACGGAGATTTCCATTGGAAAAAGGCATTCCTCCACCATGGTGGCCCACAGGGAAAGAATCATGGCGGAATGAGATGAGATTTAGAGAAGATCCTGGCATACCCCCTTATAAAAAGCCTCATGATCTGAAGAAGGTTTGGAAGGTTTATGTTTTGGCAGCGGTTATTAAACATATGTCTCCTAATGTTCATAAGATTAGGAACATAGTCAGACAGTCAAGGAATTTACAAGATAAACTCACCATTAAGGAAACAACCATTTGGTTTGCTATTATTAATCATGAAGAAACAATTGCAAGAAAACTACATCCTGAATTTTTCTCAAGTTTTGATTCTTGTGTTGAAGGAAGTAATTATGTGCTTGTTGAGGAAAATGATTTTGATGTTGTGGAAGGCGGTGAGCACAATCTAGCAAAACGAAAACTATCATCATCATCTTCACCATCATCATCGTCATCGTCATATGAAGGTACTAACAAGAGAAAACGTGAACTTGGTAAGAGAATTAGTACTCAACATGCTACACCTCTTGATCAACATGAATTCCAGCAAGAGAGAGATGTGAGAAACAATCATCATTTTACTAGTACACAACTAGGAAGCAGCAACAACATCAACAACAACGACAACAACCAATTTCAAATGGTTGGATTTGAAGTGTCAACAACTCATCAAAATGTTGCACCTCTTGACCAACGTGTGCAAGCTGCGGTACCGGTTGCAAATCAGATCATTCATCATTCAGGTAATTACTCAGGAGGAGGAGAAGTGGTTTTTGATTTGATGGACGTATATAATTCAGGCATTCAGCCGAATAAAAACACCGTCATGAGTACGATGATTCCAACTCCCGGTGTTAATCATAACAGGCACCACCAAATCTACCATGCAAGTGTTCGACAGGAGAAGAACAACATGAGTACTATGATTCCAAATCACGGTGTCAATCAAAGCATGCATCGTCAAATCTACACCGGAAGTGTTCAACAGAACAAGAACACCATCATGAGTACTATGGTTCCAACTCCTAGTGTTAATCAAAACTTGCATCCTCAAGTCTACACTTCAAGTGTTCATGAACAACAGAGGAGCAACACCATGATGAATAGTTCAATGATGAGTACTTCAATGCCAGTTATGAACATGGTTTCAACTTCCGGATTTAACCAAAACATGCAGCCTCAAATGGACCAAAATTTCTATGGTCAACAAGGGGGTGCAAATAGCTACTATCACTACAAAGTGCCTAATGTTCCAATGCAAGCAAATACCTCAACAACAACCTTTGATTCATCTTTTGATCATTTGAATGCATTCAATTCTCAATCTGATTTTGATGCTTACATCAACTCAGCATTTATTGACTCTCCTACTGTGGCATCATCAAGTTATGATTTCTCAACGTTCGACCAAAAGGGAATCAATAATTAA

Protein sequence

>Msa0928190

MHPNVYNGAIANPSRGEASNNAKQDKGKEKVEEDGEKKELTIEELEAKISKDKMLLKKMKEERSKRDNTTTLEQRKRKTMARAQERVLRYMLKMMEVCDARGFIYGVIPHEGKPMSGSSENLRGWWKDIVKFDKNGPAAIAKYEAENAITTTNYQKSNGEPITFDLLNELPDTILSSLLSSLVPHCDPPQRRFPLEKGIPPPWWPTGKESWRNEMRFREDPGIPPYKKPHDLKKVWKVYVLAAVIKHMSPNVHKIRNIVRQSRNLQDKLTIKETTIWFAIINHEETIARKLHPEFFSSFDSCVEGSNYVLVEENDFDVVEGGEHNLAKRKLSSSSSPSSSSSSYEGTNKRKRELGKRISTQHATPLDQHEFQQERDVRNNHHFTSTQLGSSNNINNNDNNQFQMVGFEVSTTHQNVAPLDQRVQAAVPVANQIIHHSGNYSGGGEVVFDLMDVYNSGIQPNKNTVMSTMIPTPGVNHNRHHQIYHASVRQEKNNMSTMIPNHGVNQSMHRQIYTGSVQQNKNTIMSTMVPTPSVNQNLHPQVYTSSVHEQQRSNTMMNSSMMSTSMPVMNMVSTSGFNQNMQPQMDQNFYGQQGGANSYYHYKVPNVPMQANTSTTTFDSSFDHLNAFNSQSDFDAYINSAFIDSPTVASSSYDFSTFDQKGINN*