Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0928230 | AES75863.1 | 83.540 | 565 | 52 | 3 | 1 | 524 | 95 | 659 | 0.0 | 914 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0928230 | sp|Q9SLH0|EIL1_ARATH | 60.500 | 200 | 79 | 0 | 1 | 200 | 108 | 307 | 9.93e-85 | 276 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0928230 | TF | EIL |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0928230 | MtrunA17_Chr6g0476301 | 87.978 | 366 | 43 | 1 | 1 | 365 | 5 | 370 | 0.0 | 647 |
| Msa0928230 | MtrunA17_Chr6g0473191 | 89.726 | 292 | 30 | 0 | 1 | 292 | 5 | 296 | 0.0 | 530 |
| Msa0928230 | MtrunA17_Chr6g0476291 | 89.474 | 266 | 28 | 0 | 1 | 266 | 5 | 270 | 2.51e-170 | 481 |
| Msa0928230 | MtrunA17_Chr3g0080401 | 49.153 | 354 | 152 | 9 | 1 | 349 | 5 | 335 | 5.30e-102 | 310 |
| Msa0928230 | MtrunA17_Chr3g0118361 | 39.302 | 430 | 213 | 12 | 1 | 393 | 110 | 528 | 4.20e-92 | 294 |
| Msa0928230 | MtrunA17_Chr5g0440591 | 39.853 | 409 | 203 | 8 | 1 | 373 | 107 | 508 | 1.92e-87 | 281 |
| Msa0928230 | MtrunA17_Chr2g0329151 | 58.163 | 196 | 79 | 2 | 1 | 196 | 98 | 290 | 3.19e-76 | 252 |
| Msa0928230 | MtrunA17_Chr3g0124291 | 51.795 | 195 | 91 | 3 | 1 | 193 | 87 | 280 | 4.95e-69 | 228 |
| Msa0928230 | MtrunA17_Chr8g0382561 | 50.510 | 196 | 93 | 3 | 1 | 193 | 77 | 271 | 4.46e-65 | 218 |
| Msa0928230 | MtrunA17_Chr7g0260281 | 39.216 | 102 | 52 | 3 | 6 | 99 | 21 | 120 | 1.58e-14 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0928230 | AT2G27050.1 | 60.500 | 200 | 79 | 0 | 1 | 200 | 108 | 307 | 1.01e-85 | 276 |
| Msa0928230 | AT3G20770.1 | 38.443 | 424 | 216 | 11 | 1 | 391 | 107 | 518 | 4.18e-84 | 273 |
| Msa0928230 | AT5G10120.1 | 56.410 | 195 | 83 | 1 | 1 | 193 | 81 | 275 | 2.33e-74 | 243 |
| Msa0928230 | AT1G73730.2 | 56.633 | 196 | 80 | 2 | 1 | 196 | 86 | 276 | 1.04e-73 | 244 |
| Msa0928230 | AT1G73730.1 | 56.633 | 196 | 80 | 2 | 1 | 196 | 98 | 288 | 1.33e-73 | 244 |
| Msa0928230 | AT5G65100.1 | 53.368 | 193 | 89 | 1 | 1 | 192 | 111 | 303 | 3.26e-67 | 227 |
| Msa0928230 | AT5G21120.2 | 39.617 | 313 | 166 | 9 | 1 | 301 | 116 | 417 | 3.01e-63 | 215 |
| Msa0928230 | AT5G21120.3 | 39.550 | 311 | 169 | 8 | 1 | 301 | 109 | 410 | 3.25e-63 | 215 |
| Msa0928230 | AT5G21120.1 | 39.550 | 311 | 169 | 8 | 1 | 301 | 109 | 410 | 3.25e-63 | 215 |
Find 100 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATTTGATGCTGCATATTT+TGG | 0.183879 | 6_2:-73308932 | None:intergenic |
| CTTGATGGCCATGAAAATTT+TGG | 0.189175 | 6_2:-73308956 | None:intergenic |
| TGGCATCATTAAGTTATAAT+TGG | 0.197242 | 6_2:+73309105 | Msa0928230:CDS |
| GCTAAATACGGAACAGAAAA+TGG | 0.248760 | 6_2:+73306429 | Msa0928230:CDS |
| ACAAGATAAACTCAGTATTA+AGG | 0.259065 | 6_2:+73306803 | Msa0928230:CDS |
| CGGAGATTTCCATTGGAAAA+AGG | 0.266811 | 6_2:+73306579 | Msa0928230:CDS |
| GTATTAAGGAAACATCTATT+TGG | 0.288262 | 6_2:+73306817 | Msa0928230:CDS |
| TTCAGCGAGTGAAGTGTAAT+TGG | 0.310216 | 6_2:-73306489 | None:intergenic |
| CTTTGATTAACACCCTGATT+TGG | 0.319131 | 6_2:-73308786 | None:intergenic |
| GAACTACCCGACACCATATT+AGG | 0.324492 | 6_2:+73306513 | Msa0928230:CDS |
| GAGTACTATGATTCCAAATC+AGG | 0.335331 | 6_2:+73308773 | Msa0928230:CDS |
| TTGATGGACATATATAATTC+AGG | 0.341441 | 6_2:+73308636 | Msa0928230:CDS |
| AGAAGTGGTTTCTGATTTGA+TGG | 0.347106 | 6_2:+73308620 | Msa0928230:CDS |
| GGTTTGGAAGGTTTATGTTT+TGG | 0.353709 | 6_2:+73306710 | Msa0928230:CDS |
| ATAGTTAAATTTGACATAAA+CGG | 0.356609 | 6_2:+73306393 | Msa0928230:CDS |
| GATGCTCGTGGCTTCATCTA+TGG | 0.357885 | 6_2:+73306303 | Msa0928230:CDS |
| TTCCTAATCTTATGAACATT+AGG | 0.362413 | 6_2:-73306756 | None:intergenic |
| CAACTTCAACCATATCGAAT+TGG | 0.368651 | 6_2:-73307217 | None:intergenic |
| CAAACCTTCTTCAGATTATG+AGG | 0.369249 | 6_2:-73306693 | None:intergenic |
| CTCCATGATTCTTTCCCTGT+TGG | 0.376931 | 6_2:-73306621 | None:intergenic |
| CCTCCACCATGGTGGCCAAC+AGG | 0.377036 | 6_2:+73306606 | Msa0928230:CDS |
| TAGTTAAATTTGACATAAAC+GGG | 0.385553 | 6_2:+73306394 | Msa0928230:CDS |
| CTCATAATCTGAAGAAGGTT+TGG | 0.391254 | 6_2:+73306694 | Msa0928230:CDS |
| ATCATCGTCATCGTCGTATG+AGG | 0.393212 | 6_2:+73307025 | Msa0928230:CDS |
| TGTTGCACCTCTTGCCCAAC+GGG | 0.402903 | 6_2:+73307262 | Msa0928230:CDS |
| AACATCAGATTGAGAATTGA+AGG | 0.406687 | 6_2:-73309063 | None:intergenic |
| AGTTATGATTCTCGTGTTGA+AGG | 0.407240 | 6_2:+73306900 | Msa0928230:CDS |
| CCAAAATATGCAGCATCAAA+TGG | 0.411899 | 6_2:+73308932 | Msa0928230:CDS |
| TGATAGAAGTGAACCTAATA+TGG | 0.434604 | 6_2:-73306526 | None:intergenic |
| CTACCATGCAAGTGTTCAAC+AGG | 0.434815 | 6_2:+73308737 | Msa0928230:CDS |
| CAGCAACAACCAATTCGATA+TGG | 0.435824 | 6_2:+73307208 | Msa0928230:CDS |
| CACTCATTGGTTTGCCCTCG+TGG | 0.436143 | 6_2:-73306335 | None:intergenic |
| GTTGCAACCATGTTCATAAC+TGG | 0.438691 | 6_2:-73308897 | None:intergenic |
| GTTGAGGCATTTGCTTGCAT+TGG | 0.441840 | 6_2:-73309035 | None:intergenic |
| ACATTAGCTACTTCAGCATT+AGG | 0.464999 | 6_2:-73309011 | None:intergenic |
| GATAAGATCATTCATCATAC+AGG | 0.467684 | 6_2:+73307308 | Msa0928230:CDS |
| TTGTCTGATGAACCACTCAT+TGG | 0.468990 | 6_2:-73306348 | None:intergenic |
| CCTGTTGGCCACCATGGTGG+AGG | 0.469951 | 6_2:-73306606 | None:intergenic |
| TGAATGATCTTATCTGCAAC+AGG | 0.473671 | 6_2:-73307299 | None:intergenic |
| TTTCTTGGTGGAATTCATGT+TGG | 0.474978 | 6_2:-73307139 | None:intergenic |
| CTCCTAATGTTCATAAGATT+AGG | 0.475251 | 6_2:+73306754 | Msa0928230:CDS |
| TTTCTATAAGCGGGTAGGCC+AGG | 0.476414 | 6_2:-73306669 | None:intergenic |
| TACCGCAGCTTGCACCCGTT+GGG | 0.480155 | 6_2:-73307276 | None:intergenic |
| CATCAGACAATTTACGAGGC+TGG | 0.493913 | 6_2:+73306361 | Msa0928230:CDS |
| ACAAATTATGACAAGTTGAA+TGG | 0.495226 | 6_2:+73306462 | Msa0928230:CDS |
| ACCATGTTCATAACTGGCAT+TGG | 0.505692 | 6_2:-73308891 | None:intergenic |
| TGATGCTTACAACAACTTTG+TGG | 0.507166 | 6_2:+73309085 | Msa0928230:CDS |
| GCTTGCACCCGTTGGGCAAG+AGG | 0.510320 | 6_2:-73307269 | None:intergenic |
| GGCCAACAGGGAAAGAATCA+TGG | 0.513222 | 6_2:+73306619 | Msa0928230:CDS |
| TTATGAGGCTTTCTATAAGC+GGG | 0.514268 | 6_2:-73306678 | None:intergenic |
| AGTGAACCTAATATGGTGTC+GGG | 0.518068 | 6_2:-73306519 | None:intergenic |
| TCTTTCCCTGTTGGCCACCA+TGG | 0.518755 | 6_2:-73306612 | None:intergenic |
| ACTCATTGGTTTGCCCTCGT+GGG | 0.520053 | 6_2:-73306334 | None:intergenic |
| TTATGATTAACACAGGGAGT+TGG | 0.521897 | 6_2:-73308699 | None:intergenic |
| ACCACAACGGAGATTTCCAT+TGG | 0.522988 | 6_2:+73306572 | Msa0928230:CDS |
| AACAAGAGAAAACGTAAACT+TGG | 0.524798 | 6_2:+73307053 | Msa0928230:CDS |
| TGCCCAACGGGTGCAAGCTG+CGG | 0.528461 | 6_2:+73307274 | Msa0928230:CDS |
| CCAGCGGCAATTGCTAAATA+CGG | 0.539614 | 6_2:+73306417 | Msa0928230:CDS |
| TAATCTGAAGAAGGTTTGGA+AGG | 0.542382 | 6_2:+73306698 | Msa0928230:CDS |
| TCTCCTGTTGAACACTTGCA+TGG | 0.543277 | 6_2:-73308740 | None:intergenic |
| ATGAGATTTAGTGAAGATCC+TGG | 0.545819 | 6_2:+73306651 | Msa0928230:CDS |
| TTCCCTGTTGGCCACCATGG+TGG | 0.549900 | 6_2:-73306609 | None:intergenic |
| CCGTATTTAGCAATTGCCGC+TGG | 0.549928 | 6_2:-73306417 | None:intergenic |
| GTACCGCAGCTTGCACCCGT+TGG | 0.555466 | 6_2:-73307277 | None:intergenic |
| AAGTGAACCTAATATGGTGT+CGG | 0.558954 | 6_2:-73306520 | None:intergenic |
| AAAGCCTCATAATCTGAAGA+AGG | 0.560995 | 6_2:+73306689 | Msa0928230:CDS |
| GGAACATAGTCAGACAATCA+AGG | 0.561355 | 6_2:+73306775 | Msa0928230:CDS |
| CTCATTGGTTTGCCCTCGTG+GGG | 0.563133 | 6_2:-73306333 | None:intergenic |
| CTCCACCATGGTGGCCAACA+GGG | 0.563459 | 6_2:+73306607 | Msa0928230:CDS |
| TCCAATGGAAATCTCCGTTG+TGG | 0.567968 | 6_2:-73306573 | None:intergenic |
| AACAATGCAGGCAATTACTC+AGG | 0.575563 | 6_2:+73308591 | Msa0928230:intron |
| AGAATTGAAGGTTGTTGTTG+AGG | 0.577679 | 6_2:-73309051 | None:intergenic |
| AATGGAAATCTCCGTTGTGG+TGG | 0.581303 | 6_2:-73306570 | None:intergenic |
| GTGCATGTTATGATTAACAC+AGG | 0.582873 | 6_2:-73308706 | None:intergenic |
| GCAGGCAATTACTCAGGAGG+AGG | 0.589101 | 6_2:+73308597 | Msa0928230:intron |
| CATCATTGAAGTATTCGTCA+TGG | 0.592826 | 6_2:-73308862 | None:intergenic |
| AGTACTATGATTCCAAATCA+GGG | 0.594860 | 6_2:+73308774 | Msa0928230:CDS |
| TCATCGTCATCGTCGTATGA+GGG | 0.596584 | 6_2:+73307026 | Msa0928230:CDS |
| ATGTTGCACCTCTTGCCCAA+CGG | 0.597293 | 6_2:+73307261 | Msa0928230:CDS |
| AAGTAATTATGTGCTTGTTG+AGG | 0.609719 | 6_2:+73306923 | Msa0928230:CDS |
| ATTATGAGGCTTTCTATAAG+CGG | 0.620975 | 6_2:-73306679 | None:intergenic |
| TTACTCAGGAGGAGGAGAAG+TGG | 0.624036 | 6_2:+73308605 | Msa0928230:CDS |
| CAGACAATTTACGAGGCTGG+TGG | 0.628174 | 6_2:+73306364 | Msa0928230:CDS |
| GAGGCTTTCTATAAGCGGGT+AGG | 0.631213 | 6_2:-73306674 | None:intergenic |
| ATTTGACATAAACGGGCCAG+CGG | 0.631675 | 6_2:+73306401 | Msa0928230:CDS |
| TGGAATTCATGTTGGTCAAG+AGG | 0.631768 | 6_2:-73307131 | None:intergenic |
| TCCAATGCCAGTTATGAACA+TGG | 0.642108 | 6_2:+73308890 | Msa0928230:CDS |
| TGGAATCATCGTACTCATGA+CGG | 0.645856 | 6_2:-73308679 | None:intergenic |
| GACGATGACGATGATGATGA+TGG | 0.648657 | 6_2:-73307017 | None:intergenic |
| ATGGAAGTTTGTGATGCTCG+TGG | 0.649462 | 6_2:+73306291 | Msa0928230:CDS |
| CGCATTGTGATCCACCACAA+CGG | 0.651211 | 6_2:+73306559 | Msa0928230:CDS |
| AATGCAGGCAATTACTCAGG+AGG | 0.669413 | 6_2:+73308594 | Msa0928230:intron |
| CACGAGGGCAAACCAATGAG+TGG | 0.675933 | 6_2:+73306336 | Msa0928230:CDS |
| CGTTGTGGTGGATCACAATG+CGG | 0.679871 | 6_2:-73306558 | None:intergenic |
| CTATGGAGTAATACCCCACG+AGG | 0.701029 | 6_2:+73306320 | Msa0928230:CDS |
| AAGGCATTCCTCCACCATGG+TGG | 0.706316 | 6_2:+73306598 | Msa0928230:CDS |
| TGCATGTTATGATTAACACA+GGG | 0.724501 | 6_2:-73308705 | None:intergenic |
| GGTTCATCAGACAATTTACG+AGG | 0.727611 | 6_2:+73306357 | Msa0928230:CDS |
| CAACAGGGAAAGAATCATGG+AGG | 0.743204 | 6_2:+73306622 | Msa0928230:CDS |
| TATGGAGTAATACCCCACGA+GGG | 0.783328 | 6_2:+73306321 | Msa0928230:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGTAACATATATTTTTTAT+GGG | + | chr6_2:73307766-73307785 | Msa0928230:intron | 10.0% |
| !!! | TTTTATTTTTTCTATGTATT+TGG | + | chr6_2:73308517-73308536 | Msa0928230:intron | 10.0% |
| !! | ATAGTTAAATTTGACATAAA+CGG | + | chr6_2:73306393-73306412 | Msa0928230:CDS | 15.0% |
| !!! | AAATTGCGTTTTTATTTTAT+TGG | - | chr6_2:73307432-73307451 | None:intergenic | 15.0% |
| !!! | GAAGTAACATATATTTTTTA+TGG | + | chr6_2:73307765-73307784 | Msa0928230:intron | 15.0% |
| !!! | TATTAGAGTTAATTTTTTTG+AGG | + | chr6_2:73307835-73307854 | Msa0928230:intron | 15.0% |
| !!! | AAAGGTATTTTTATTTAACT+AGG | + | chr6_2:73307967-73307986 | Msa0928230:intron | 15.0% |
| !! | TATAATTCACAATTTGATTA+TGG | + | chr6_2:73308143-73308162 | Msa0928230:intron | 15.0% |
| !! | CTATTTCATTATATATTACT+TGG | + | chr6_2:73308257-73308276 | Msa0928230:intron | 15.0% |
| !! | TAGTTAAATTTGACATAAAC+GGG | + | chr6_2:73306394-73306413 | Msa0928230:CDS | 20.0% |
| !! | ATTAAAAAAATCAGAATCAG+AGG | + | chr6_2:73307471-73307490 | Msa0928230:intron | 20.0% |
| !! | TTAAAAAAATCAGAATCAGA+GGG | + | chr6_2:73307472-73307491 | Msa0928230:intron | 20.0% |
| !! | CTTAAGTGATTATACAAATT+GGG | + | chr6_2:73307671-73307690 | Msa0928230:intron | 20.0% |
| !! | TTAAGTGATTATACAAATTG+GGG | + | chr6_2:73307672-73307691 | Msa0928230:intron | 20.0% |
| !! | TTTAAACCAACAAAATTGTT+TGG | - | chr6_2:73308288-73308307 | None:intergenic | 20.0% |
| !! | ACAAATTATGACAAGTTGAA+TGG | + | chr6_2:73306462-73306481 | Msa0928230:CDS | 25.0% |
| ! | TTCCTAATCTTATGAACATT+AGG | - | chr6_2:73306759-73306778 | None:intergenic | 25.0% |
| ! | ACAAGATAAACTCAGTATTA+AGG | + | chr6_2:73306803-73306822 | Msa0928230:CDS | 25.0% |
| ! | GTATTAAGGAAACATCTATT+TGG | + | chr6_2:73306817-73306836 | Msa0928230:CDS | 25.0% |
| ! | TCATAACTTGAGAAAAATTC+AGG | - | chr6_2:73306888-73306907 | None:intergenic | 25.0% |
| ! | CATATCATTTACTAGATATG+TGG | - | chr6_2:73307357-73307376 | None:intergenic | 25.0% |
| ! | ATATCTAGTAAATGATATGC+AGG | + | chr6_2:73307358-73307377 | Msa0928230:intron | 25.0% |
| ! | TATCTAGTAAATGATATGCA+GGG | + | chr6_2:73307359-73307378 | Msa0928230:intron | 25.0% |
| !!! | TTGCGTTTTTATTTTATTGG+TGG | - | chr6_2:73307429-73307448 | None:intergenic | 25.0% |
| ! | TAAAAAAATCAGAATCAGAG+GGG | + | chr6_2:73307473-73307492 | Msa0928230:intron | 25.0% |
| ! | AAAAAAATTAAGCGAATGAG+AGG | + | chr6_2:73307519-73307538 | Msa0928230:intron | 25.0% |
| ! | TGTGTTTCTTTCAATGAAAT+AGG | + | chr6_2:73307633-73307652 | Msa0928230:intron | 25.0% |
| ! | GCTTAAGTGATTATACAAAT+TGG | + | chr6_2:73307670-73307689 | Msa0928230:intron | 25.0% |
| ! | TGCTTGTTTCAAACTTAAAA+AGG | + | chr6_2:73307949-73307968 | Msa0928230:intron | 25.0% |
| !!! | CCAGATTTATTTTTCTTTTG+GGG | - | chr6_2:73308211-73308230 | None:intergenic | 25.0% |
| !!! | GCCAGATTTATTTTTCTTTT+GGG | - | chr6_2:73308212-73308231 | None:intergenic | 25.0% |
| !!! | TGCCAGATTTATTTTTCTTT+TGG | - | chr6_2:73308213-73308232 | None:intergenic | 25.0% |
| !! | AGCTAACATAATTTTTACGA+GGG | - | chr6_2:73308545-73308564 | None:intergenic | 25.0% |
| !! | AAGCTAACATAATTTTTACG+AGG | - | chr6_2:73308546-73308565 | None:intergenic | 25.0% |
| !! | TTGATGGACATATATAATTC+AGG | + | chr6_2:73308636-73308655 | Msa0928230:CDS | 25.0% |
| !!! | TGCATATTTTGGTTAAATCT+GGG | - | chr6_2:73308924-73308943 | None:intergenic | 25.0% |
| ! | TGGCATCATTAAGTTATAAT+TGG | + | chr6_2:73309105-73309124 | Msa0928230:CDS | 25.0% |
| TGATAGAAGTGAACCTAATA+TGG | - | chr6_2:73306529-73306548 | None:intergenic | 30.0% | |
| ATTATGAGGCTTTCTATAAG+CGG | - | chr6_2:73306682-73306701 | None:intergenic | 30.0% | |
| CTCCTAATGTTCATAAGATT+AGG | + | chr6_2:73306754-73306773 | Msa0928230:CDS | 30.0% | |
| ! | AAGTAATTATGTGCTTGTTG+AGG | + | chr6_2:73306923-73306942 | Msa0928230:CDS | 30.0% |
| !! | AATGATTTTGATGTTGTGGA+AGG | + | chr6_2:73306948-73306967 | Msa0928230:CDS | 30.0% |
| AACAAGAGAAAACGTAAACT+TGG | + | chr6_2:73307053-73307072 | Msa0928230:CDS | 30.0% | |
| !!! | TGTTCCTCACATTTTTTTCT+TGG | - | chr6_2:73307157-73307176 | None:intergenic | 30.0% |
| GATAAGATCATTCATCATAC+AGG | + | chr6_2:73307308-73307327 | Msa0928230:CDS | 30.0% | |
| ATTCATCATACAGGTAATCA+TGG | + | chr6_2:73307317-73307336 | Msa0928230:intron | 30.0% | |
| TGAGAGGTAGAATTTACTAA+CGG | + | chr6_2:73307535-73307554 | Msa0928230:intron | 30.0% | |
| TACTAGATTTATGTCCAGAT+AGG | + | chr6_2:73307707-73307726 | Msa0928230:intron | 30.0% | |
| CTATAAGCTAACATATCATC+AGG | - | chr6_2:73307918-73307937 | None:intergenic | 30.0% | |
| ! | CTGATGATATGTTAGCTTAT+AGG | + | chr6_2:73307916-73307935 | Msa0928230:intron | 30.0% |
| ! | CTAGGAAAATGTTAGCTTAT+AGG | + | chr6_2:73307985-73308004 | Msa0928230:intron | 30.0% |
| ! | TAGCTTATAGGTCTCAATTT+TGG | + | chr6_2:73307997-73308016 | Msa0928230:intron | 30.0% |
| !! | TGACTCATGCTTTAGAAAAT+AGG | + | chr6_2:73308117-73308136 | Msa0928230:intron | 30.0% |
| TCACAATTTGATTATGGTCA+AGG | + | chr6_2:73308149-73308168 | Msa0928230:intron | 30.0% | |
| CACAATTTGATTATGGTCAA+GGG | + | chr6_2:73308150-73308169 | Msa0928230:intron | 30.0% | |
| CCCCAAAAGAAAAATAAATC+TGG | + | chr6_2:73308208-73308227 | Msa0928230:intron | 30.0% | |
| ! | CTAACATAATTTTTACGAGG+GGG | - | chr6_2:73308543-73308562 | None:intergenic | 30.0% |
| ! | GCTAACATAATTTTTACGAG+GGG | - | chr6_2:73308544-73308563 | None:intergenic | 30.0% |
| TGCATGTTATGATTAACACA+GGG | - | chr6_2:73308708-73308727 | None:intergenic | 30.0% | |
| AGTACTATGATTCCAAATCA+GGG | + | chr6_2:73308774-73308793 | Msa0928230:CDS | 30.0% | |
| !!! | CTGCATATTTTGGTTAAATC+TGG | - | chr6_2:73308925-73308944 | None:intergenic | 30.0% |
| ! | CAAATGGACCAAAATTTTCA+TGG | + | chr6_2:73308948-73308967 | Msa0928230:CDS | 30.0% |
| ! | AAAATTTTCATGGCCATCAA+GGG | + | chr6_2:73308958-73308977 | Msa0928230:CDS | 30.0% |
| AACATCAGATTGAGAATTGA+AGG | - | chr6_2:73309066-73309085 | None:intergenic | 30.0% | |
| GCTAAATACGGAACAGAAAA+TGG | + | chr6_2:73306429-73306448 | Msa0928230:CDS | 35.0% | |
| AAGTGAACCTAATATGGTGT+CGG | - | chr6_2:73306523-73306542 | None:intergenic | 35.0% | |
| ATGAGATTTAGTGAAGATCC+TGG | + | chr6_2:73306651-73306670 | Msa0928230:CDS | 35.0% | |
| TTATGAGGCTTTCTATAAGC+GGG | - | chr6_2:73306681-73306700 | None:intergenic | 35.0% | |
| AAAGCCTCATAATCTGAAGA+AGG | + | chr6_2:73306689-73306708 | Msa0928230:CDS | 35.0% | |
| CAAACCTTCTTCAGATTATG+AGG | - | chr6_2:73306696-73306715 | None:intergenic | 35.0% | |
| CTCATAATCTGAAGAAGGTT+TGG | + | chr6_2:73306694-73306713 | Msa0928230:CDS | 35.0% | |
| TAATCTGAAGAAGGTTTGGA+AGG | + | chr6_2:73306698-73306717 | Msa0928230:CDS | 35.0% | |
| ! | GGTTTGGAAGGTTTATGTTT+TGG | + | chr6_2:73306710-73306729 | Msa0928230:CDS | 35.0% |
| AGTTATGATTCTCGTGTTGA+AGG | + | chr6_2:73306900-73306919 | Msa0928230:CDS | 35.0% | |
| !! | GGCAAATGATTTTGATGTTG+TGG | + | chr6_2:73306944-73306963 | Msa0928230:CDS | 35.0% |
| TTTCTTGGTGGAATTCATGT+TGG | - | chr6_2:73307142-73307161 | None:intergenic | 35.0% | |
| TCCACCAAGAAAAAAATGTG+AGG | + | chr6_2:73307150-73307169 | Msa0928230:CDS | 35.0% | |
| !!! | TCCTCACATTTTTTTCTTGG+TGG | - | chr6_2:73307154-73307173 | None:intergenic | 35.0% |
| !! | CATTTTACTAGCGCTGAAAT+AGG | + | chr6_2:73307182-73307201 | Msa0928230:CDS | 35.0% |
| CAACTTCAACCATATCGAAT+TGG | - | chr6_2:73307220-73307239 | None:intergenic | 35.0% | |
| TGAATGATCTTATCTGCAAC+AGG | - | chr6_2:73307302-73307321 | None:intergenic | 35.0% | |
| TCATTTACTAGATATGTGGC+TGG | - | chr6_2:73307353-73307372 | None:intergenic | 35.0% | |
| ! | CTCGGCTCTCTATTTAAAAT+AGG | + | chr6_2:73307403-73307422 | Msa0928230:intron | 35.0% |
| ! | ATTTGTCACTTATCCGTTGT+GGG | + | chr6_2:73307568-73307587 | Msa0928230:intron | 35.0% |
| GTGATTATACAAATTGGGGA+TGG | + | chr6_2:73307676-73307695 | Msa0928230:intron | 35.0% | |
| !! | TAGACTTTAGTTCTCCTATC+TGG | - | chr6_2:73307724-73307743 | None:intergenic | 35.0% |
| CAACTAAACTTGTGCCTTAA+GGG | - | chr6_2:73307807-73307826 | None:intergenic | 35.0% | |
| CTTAAGGCACAAGTTTAGTT+GGG | + | chr6_2:73307806-73307825 | Msa0928230:intron | 35.0% | |
| TTAAGGCACAAGTTTAGTTG+GGG | + | chr6_2:73307807-73307826 | Msa0928230:intron | 35.0% | |
| ! | GCTACTCCAAACAATTTTGT+TGG | + | chr6_2:73308279-73308298 | Msa0928230:intron | 35.0% |
| TATGGATTCCATAACAATGC+AGG | + | chr6_2:73308579-73308598 | Msa0928230:intron | 35.0% | |
| AGTAATTGCCTGCATTGTTA+TGG | - | chr6_2:73308590-73308609 | None:intergenic | 35.0% | |
| ! | AGAAGTGGTTTCTGATTTGA+TGG | + | chr6_2:73308620-73308639 | Msa0928230:CDS | 35.0% |
| TTATGATTAACACAGGGAGT+TGG | - | chr6_2:73308702-73308721 | None:intergenic | 35.0% | |
| GTGCATGTTATGATTAACAC+AGG | - | chr6_2:73308709-73308728 | None:intergenic | 35.0% | |
| GAGTACTATGATTCCAAATC+AGG | + | chr6_2:73308773-73308792 | Msa0928230:CDS | 35.0% | |
| CTTTGATTAACACCCTGATT+TGG | - | chr6_2:73308789-73308808 | None:intergenic | 35.0% | |
| ! | CATCATTGAAGTATTCGTCA+TGG | - | chr6_2:73308865-73308884 | None:intergenic | 35.0% |
| ! | CCATTTGATGCTGCATATTT+TGG | - | chr6_2:73308935-73308954 | None:intergenic | 35.0% |
| CCAAAATATGCAGCATCAAA+TGG | + | chr6_2:73308932-73308951 | Msa0928230:CDS | 35.0% | |
| !! | CTTGATGGCCATGAAAATTT+TGG | - | chr6_2:73308959-73308978 | None:intergenic | 35.0% |
| ! | CAAAATTTTCATGGCCATCA+AGG | + | chr6_2:73308957-73308976 | Msa0928230:CDS | 35.0% |
| ! | AAATTTTCATGGCCATCAAG+GGG | + | chr6_2:73308959-73308978 | Msa0928230:CDS | 35.0% |
| ACATTAGCTACTTCAGCATT+AGG | - | chr6_2:73309014-73309033 | None:intergenic | 35.0% | |
| ! | AGAATTGAAGGTTGTTGTTG+AGG | - | chr6_2:73309054-73309073 | None:intergenic | 35.0% |
| TGATGCTTACAACAACTTTG+TGG | + | chr6_2:73309085-73309104 | Msa0928230:CDS | 35.0% | |
| TTGTCTGATGAACCACTCAT+TGG | - | chr6_2:73306351-73306370 | None:intergenic | 40.0% | |
| GGTTCATCAGACAATTTACG+AGG | + | chr6_2:73306357-73306376 | Msa0928230:CDS | 40.0% | |
| TTCAGCGAGTGAAGTGTAAT+TGG | - | chr6_2:73306492-73306511 | None:intergenic | 40.0% | |
| AGTGAACCTAATATGGTGTC+GGG | - | chr6_2:73306522-73306541 | None:intergenic | 40.0% | |
| CGGAGATTTCCATTGGAAAA+AGG | + | chr6_2:73306579-73306598 | Msa0928230:CDS | 40.0% | |
| !!! | GAAGGTTTATGTTTTGGCAG+CGG | + | chr6_2:73306716-73306735 | Msa0928230:CDS | 40.0% |
| GGAACATAGTCAGACAATCA+AGG | + | chr6_2:73306775-73306794 | Msa0928230:CDS | 40.0% | |
| !! | GATTTTGATGTTGTGGAAGG+TGG | + | chr6_2:73306951-73306970 | Msa0928230:CDS | 40.0% |
| TGGAATTCATGTTGGTCAAG+AGG | - | chr6_2:73307134-73307153 | None:intergenic | 40.0% | |
| CAGCAACAACCAATTCGATA+TGG | + | chr6_2:73307208-73307227 | Msa0928230:CDS | 40.0% | |
| AATTTACTAACGGCGTCGTT+TGG | + | chr6_2:73307545-73307564 | Msa0928230:intron | 40.0% | |
| ! | GATTTGTCACTTATCCGTTG+TGG | + | chr6_2:73307567-73307586 | Msa0928230:intron | 40.0% |
| CCAACTAAACTTGTGCCTTA+AGG | - | chr6_2:73307808-73307827 | None:intergenic | 40.0% | |
| CCTTAAGGCACAAGTTTAGT+TGG | + | chr6_2:73307805-73307824 | Msa0928230:intron | 40.0% | |
| TAAGGCACAAGTTTAGTTGG+GGG | + | chr6_2:73307808-73307827 | Msa0928230:intron | 40.0% | |
| !!! | TTTTTGAGGCCCATAGCTTT+TGG | + | chr6_2:73307849-73307868 | Msa0928230:intron | 40.0% |
| ATGGAATCCATAATCAGCGA+CGG | - | chr6_2:73308571-73308590 | None:intergenic | 40.0% | |
| AACAATGCAGGCAATTACTC+AGG | + | chr6_2:73308591-73308610 | Msa0928230:intron | 40.0% | |
| TGGAATCATCGTACTCATGA+CGG | - | chr6_2:73308682-73308701 | None:intergenic | 40.0% | |
| !!! | CACTTGCATGGTAGTTTTGA+TGG | - | chr6_2:73308731-73308750 | None:intergenic | 40.0% |
| TCCAATGCCAGTTATGAACA+TGG | + | chr6_2:73308890-73308909 | Msa0928230:CDS | 40.0% | |
| ACCATGTTCATAACTGGCAT+TGG | - | chr6_2:73308894-73308913 | None:intergenic | 40.0% | |
| GTTGCAACCATGTTCATAAC+TGG | - | chr6_2:73308900-73308919 | None:intergenic | 40.0% | |
| ! | AATTTTCATGGCCATCAAGG+GGG | + | chr6_2:73308960-73308979 | Msa0928230:CDS | 40.0% |
| ATGGAAGTTTGTGATGCTCG+TGG | + | chr6_2:73306291-73306310 | Msa0928230:CDS | 45.0% | |
| TATGGAGTAATACCCCACGA+GGG | + | chr6_2:73306321-73306340 | Msa0928230:CDS | 45.0% | |
| CATCAGACAATTTACGAGGC+TGG | + | chr6_2:73306361-73306380 | Msa0928230:CDS | 45.0% | |
| ATTTGACATAAACGGGCCAG+CGG | + | chr6_2:73306401-73306420 | Msa0928230:CDS | 45.0% | |
| CCAGCGGCAATTGCTAAATA+CGG | + | chr6_2:73306417-73306436 | Msa0928230:CDS | 45.0% | |
| GAACTACCCGACACCATATT+AGG | + | chr6_2:73306513-73306532 | Msa0928230:CDS | 45.0% | |
| AATGGAAATCTCCGTTGTGG+TGG | - | chr6_2:73306573-73306592 | None:intergenic | 45.0% | |
| ACCACAACGGAGATTTCCAT+TGG | + | chr6_2:73306572-73306591 | Msa0928230:CDS | 45.0% | |
| TCCAATGGAAATCTCCGTTG+TGG | - | chr6_2:73306576-73306595 | None:intergenic | 45.0% | |
| ! | GGAGGAATGCCTTTTTCCAA+TGG | - | chr6_2:73306591-73306610 | None:intergenic | 45.0% |
| !! | AAAAAGGCATTCCTCCACCA+TGG | + | chr6_2:73306595-73306614 | Msa0928230:CDS | 45.0% |
| CTCCATGATTCTTTCCCTGT+TGG | - | chr6_2:73306624-73306643 | None:intergenic | 45.0% | |
| CAACAGGGAAAGAATCATGG+AGG | + | chr6_2:73306622-73306641 | Msa0928230:CDS | 45.0% | |
| ! | GACGATGACGATGATGATGA+TGG | - | chr6_2:73307020-73307039 | None:intergenic | 45.0% |
| ATCATCGTCATCGTCGTATG+AGG | + | chr6_2:73307025-73307044 | Msa0928230:CDS | 45.0% | |
| TCATCGTCATCGTCGTATGA+GGG | + | chr6_2:73307026-73307045 | Msa0928230:CDS | 45.0% | |
| AGCCTCCTATTTCATAGGGA+CGG | - | chr6_2:73307385-73307404 | None:intergenic | 45.0% | |
| TCCCTATGAAATAGGAGGCT+CGG | + | chr6_2:73307385-73307404 | Msa0928230:intron | 45.0% | |
| TCACTTATCCGTTGTGGGAA+AGG | + | chr6_2:73307573-73307592 | Msa0928230:intron | 45.0% | |
| CACTTATCCGTTGTGGGAAA+GGG | + | chr6_2:73307574-73307593 | Msa0928230:intron | 45.0% | |
| ! | CGTTTTTCCCTTTCCCACAA+CGG | - | chr6_2:73307584-73307603 | None:intergenic | 45.0% |
| GTGGGAAAGGGAAAAACGAA+TGG | + | chr6_2:73307586-73307605 | Msa0928230:intron | 45.0% | |
| ! | CATGCTAACTTGTGCCCTTA+AGG | + | chr6_2:73307790-73307809 | Msa0928230:intron | 45.0% |
| AGCTAACATATCATCAGGCC+CGG | - | chr6_2:73307913-73307932 | None:intergenic | 45.0% | |
| GCGAATCCCTTCACATCAAT+GGG | + | chr6_2:73308172-73308191 | Msa0928230:intron | 45.0% | |
| CGAATCCCTTCACATCAATG+GGG | + | chr6_2:73308173-73308192 | Msa0928230:intron | 45.0% | |
| TGCTACCCCATTGATGTGAA+GGG | - | chr6_2:73308181-73308200 | None:intergenic | 45.0% | |
| ATGCTACCCCATTGATGTGA+AGG | - | chr6_2:73308182-73308201 | None:intergenic | 45.0% | |
| TCACATCAATGGGGTAGCAT+TGG | + | chr6_2:73308182-73308201 | Msa0928230:intron | 45.0% | |
| AATGCAGGCAATTACTCAGG+AGG | + | chr6_2:73308594-73308613 | Msa0928230:intron | 45.0% | |
| CTACCATGCAAGTGTTCAAC+AGG | + | chr6_2:73308737-73308756 | Msa0928230:CDS | 45.0% | |
| TCTCCTGTTGAACACTTGCA+TGG | - | chr6_2:73308743-73308762 | None:intergenic | 45.0% | |
| ! | GTTGAGGCATTTGCTTGCAT+TGG | - | chr6_2:73309038-73309057 | None:intergenic | 45.0% |
| GATGCTCGTGGCTTCATCTA+TGG | + | chr6_2:73306303-73306322 | Msa0928230:CDS | 50.0% | |
| CTATGGAGTAATACCCCACG+AGG | + | chr6_2:73306320-73306339 | Msa0928230:CDS | 50.0% | |
| !! | ACTCATTGGTTTGCCCTCGT+GGG | - | chr6_2:73306337-73306356 | None:intergenic | 50.0% |
| CAGACAATTTACGAGGCTGG+TGG | + | chr6_2:73306364-73306383 | Msa0928230:CDS | 50.0% | |
| CCGTATTTAGCAATTGCCGC+TGG | - | chr6_2:73306420-73306439 | None:intergenic | 50.0% | |
| !! | CGTTGTGGTGGATCACAATG+CGG | - | chr6_2:73306561-73306580 | None:intergenic | 50.0% |
| CGCATTGTGATCCACCACAA+CGG | + | chr6_2:73306559-73306578 | Msa0928230:CDS | 50.0% | |
| GGCCAACAGGGAAAGAATCA+TGG | + | chr6_2:73306619-73306638 | Msa0928230:CDS | 50.0% | |
| TTTCTATAAGCGGGTAGGCC+AGG | - | chr6_2:73306672-73306691 | None:intergenic | 50.0% | |
| GAGGCTTTCTATAAGCGGGT+AGG | - | chr6_2:73306677-73306696 | None:intergenic | 50.0% | |
| ATGTTGCACCTCTTGCCCAA+CGG | + | chr6_2:73307261-73307280 | Msa0928230:CDS | 50.0% | |
| GCCGAGCCTCCTATTTCATA+GGG | - | chr6_2:73307389-73307408 | None:intergenic | 50.0% | |
| AGCCGAGCCTCCTATTTCAT+AGG | - | chr6_2:73307390-73307409 | None:intergenic | 50.0% | |
| GCACAAGTTTAGTTGGGGGT+GGG | + | chr6_2:73307812-73307831 | Msa0928230:intron | 50.0% | |
| ! | TTGAGGCCCATAGCTTTTGG+AGG | + | chr6_2:73307852-73307871 | Msa0928230:intron | 50.0% |
| ! | TGCAAGGTGCTCAATCAAGC+CGG | - | chr6_2:73307879-73307898 | None:intergenic | 50.0% |
| GGCGAATCCCTTCACATCAA+TGG | + | chr6_2:73308171-73308190 | Msa0928230:intron | 50.0% | |
| TTACTCAGGAGGAGGAGAAG+TGG | + | chr6_2:73308605-73308624 | Msa0928230:CDS | 50.0% | |
| AGCTATTTGCACCCCCTTGA+TGG | - | chr6_2:73308974-73308993 | None:intergenic | 50.0% | |
| !! | CTCATTGGTTTGCCCTCGTG+GGG | - | chr6_2:73306336-73306355 | None:intergenic | 55.0% |
| !! | CACTCATTGGTTTGCCCTCG+TGG | - | chr6_2:73306338-73306357 | None:intergenic | 55.0% |
| CACGAGGGCAAACCAATGAG+TGG | + | chr6_2:73306336-73306355 | Msa0928230:CDS | 55.0% | |
| ! | AAGGCATTCCTCCACCATGG+TGG | + | chr6_2:73306598-73306617 | Msa0928230:CDS | 55.0% |
| TCTTTCCCTGTTGGCCACCA+TGG | - | chr6_2:73306615-73306634 | None:intergenic | 55.0% | |
| TGTTGCACCTCTTGCCCAAC+GGG | + | chr6_2:73307262-73307281 | Msa0928230:CDS | 55.0% | |
| CAGGGCCGTCCCTATGAAAT+AGG | + | chr6_2:73307377-73307396 | Msa0928230:intron | 55.0% | |
| GGCCGTCCCTATGAAATAGG+AGG | + | chr6_2:73307380-73307399 | Msa0928230:intron | 55.0% | |
| GGCACAAGTTTAGTTGGGGG+TGG | + | chr6_2:73307811-73307830 | Msa0928230:intron | 55.0% | |
| !! | GCCCATAGCTTTTGGAGGTC+CGG | + | chr6_2:73307857-73307876 | Msa0928230:intron | 55.0% |
| GCCGGACCTCCAAAAGCTAT+GGG | - | chr6_2:73307861-73307880 | None:intergenic | 55.0% | |
| AGCCGGACCTCCAAAAGCTA+TGG | - | chr6_2:73307862-73307881 | None:intergenic | 55.0% | |
| ACCTTGCACTCCCTCAAGAC+CGG | + | chr6_2:73307891-73307910 | Msa0928230:intron | 55.0% | |
| ATCATCAGGCCCGGTCTTGA+GGG | - | chr6_2:73307904-73307923 | None:intergenic | 55.0% | |
| TATCATCAGGCCCGGTCTTG+AGG | - | chr6_2:73307905-73307924 | None:intergenic | 55.0% | |
| ! | AGCTTCGCCGTCGCTGATTA+TGG | + | chr6_2:73308561-73308580 | Msa0928230:intron | 55.0% |
| GCAGGCAATTACTCAGGAGG+AGG | + | chr6_2:73308597-73308616 | Msa0928230:intron | 55.0% | |
| CTCCACCATGGTGGCCAACA+GGG | + | chr6_2:73306607-73306626 | Msa0928230:CDS | 60.0% | |
| TTCCCTGTTGGCCACCATGG+TGG | - | chr6_2:73306612-73306631 | None:intergenic | 60.0% | |
| TACCGCAGCTTGCACCCGTT+GGG | - | chr6_2:73307279-73307298 | None:intergenic | 60.0% | |
| CCTTGCACTCCCTCAAGACC+GGG | + | chr6_2:73307892-73307911 | Msa0928230:intron | 60.0% | |
| CCTGTTGGCCACCATGGTGG+AGG | - | chr6_2:73306609-73306628 | None:intergenic | 65.0% | |
| CCTCCACCATGGTGGCCAAC+AGG | + | chr6_2:73306606-73306625 | Msa0928230:CDS | 65.0% | |
| GCTTGCACCCGTTGGGCAAG+AGG | - | chr6_2:73307272-73307291 | None:intergenic | 65.0% | |
| TGCCCAACGGGTGCAAGCTG+CGG | + | chr6_2:73307274-73307293 | Msa0928230:CDS | 65.0% | |
| GTACCGCAGCTTGCACCCGT+TGG | - | chr6_2:73307280-73307299 | None:intergenic | 65.0% | |
| ! | CCCGGTCTTGAGGGAGTGCA+AGG | - | chr6_2:73307895-73307914 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 73306291 | 73309136 | 73306291 | ID=Msa0928230;Name=Msa0928230 |
| chr6_2 | mRNA | 73306291 | 73309136 | 73306291 | ID=Msa0928230-mRNA-1;Parent=Msa0928230;Name=Msa0928230-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0|0|1|1|1|2|0|524 |
| chr6_2 | exon | 73306291 | 73307329 | 73306291 | ID=Msa0928230-mRNA-1:exon:12494;Parent=Msa0928230-mRNA-1 |
| chr6_2 | exon | 73308601 | 73309136 | 73308601 | ID=Msa0928230-mRNA-1:exon:12495;Parent=Msa0928230-mRNA-1 |
| chr6_2 | CDS | 73306291 | 73307329 | 73306291 | ID=Msa0928230-mRNA-1:cds;Parent=Msa0928230-mRNA-1 |
| chr6_2 | CDS | 73308601 | 73309136 | 73308601 | ID=Msa0928230-mRNA-1:cds;Parent=Msa0928230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
