AlfalfaGEDB | Msa0928630

M. sativa cultivar zhongmu-4 / Msa0928630

KEGG: K17604
GO: -
PFAM: PF03101.18

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0928630	AES61431.2	92.661	218	16	0	1	218	1	218	1.15e-149	427

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0928630	TF	FAR1

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0928630	MtrunA17_Chr1g0172971	75.758	132	17	1	1	132	1	117	7.72e-62	201

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Find 36 sgRNAs with CRISPR-Local

Find 42 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAAAGAAGGTTTCAAGAA+GGG	0.545537	6_2:-74461915	Msa0928630:CDS
ACAAAACAAGAAATCTGATA+AGG	0.511435	6_2:-74461961	Msa0928630:CDS
ACATCAACTTCATCTGATAG+TGG	0.459514	6_2:-74462215	Msa0928630:CDS
ACCTGTGGACTGTTTGTTGT+TGG	0.414676	6_2:+74461867	None:intergenic
AGAACGTCTTATGAAGTTAT+GGG	0.466325	6_2:-74461612	Msa0928630:CDS
AGCTGGAATATATTTGAAGC+TGG	0.507410	6_2:-74461793	Msa0928630:CDS
ATGTGTATAAGATATATAGA+TGG	0.452819	6_2:-74461758	Msa0928630:CDS
CCATGATTCTTTATTGCTAG+GGG	0.537011	6_2:+74462091	None:intergenic
CCCCTAGCAATAAAGAATCA+TGG	0.497001	6_2:-74462091	Msa0928630:CDS
CGAGAAGTAAATGAAGTTCA+AGG	0.430014	6_2:-74461675	Msa0928630:CDS

Showing 1 to 10 of 36 entries

Previous1 2 3 4Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TCCATGATTCTTTATTGCTA+GGG	+	chr6_2:74461727-74461746	None:intergenic	30.0%
TTCCATGATTCTTTATTGCT+AGG	+	chr6_2:74461728-74461747	None:intergenic	30.0%
GGTAATTATGCATATAACAC+TGG	-	chr6_2:74461791-74461810	Msa0928630:CDS	30.0%
CGTTATGTTTGTAACAAAGA+AGG	-	chr6_2:74461887-74461906	Msa0928630:CDS	30.0%
TAACAAAGAAGGTTTCAAGA+AGG	-	chr6_2:74461898-74461917	Msa0928630:CDS	30.0%
AACAAAGAAGGTTTCAAGAA+GGG	-	chr6_2:74461899-74461918	Msa0928630:CDS	30.0%
GTTTACTTAATCCTAACAAC+AGG	-	chr6_2:74461924-74461943	Msa0928630:CDS	30.0%
TAAGATATATAGATGGGATG+TGG	-	chr6_2:74462063-74462082	Msa0928630:CDS	30.0%
TTACTTCTCGAAATGATCTA+AGG	+	chr6_2:74462129-74462148	None:intergenic	30.0%
AGAACGTCTTATGAAGTTAT+GGG	-	chr6_2:74462202-74462221	Msa0928630:CDS	30.0%

Showing 1 to 10 of 42 entries

Previous1 2 3 4 5Next

Chromosome	Type	Strat	End	Strand	Name
chr6_2	gene	74461590	74462246	74461590	ID=Msa0928630;Name=Msa0928630
chr6_2	mRNA	74461590	74462246	74461590	ID=Msa0928630-mRNA-1;Parent=Msa0928630;Name=Msa0928630-mRNA-1;_AED=0.38;_eAED=0.38;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|218
chr6_2	exon	74461590	74462246	74461590	ID=Msa0928630-mRNA-1:exon:12687;Parent=Msa0928630-mRNA-1
chr6_2	CDS	74461590	74462246	74461590	ID=Msa0928630-mRNA-1:cds;Parent=Msa0928630-mRNA-1

Gene Sequence

>Msa0928630

ATGGATTTGACATCAACTTCATCTGATAGTGGACAACTGAGTGTTGAAACTTCATCACTGATTCATGCTGAGAGTGGACAATTGAGTGTTACTCCCCTAGCAATGATTCATGCTGACAGTTCTCAATGTTACTCCCCTAGCAATAAAGAATCATGGAAGTCTTTAGTCTTTCAATCTATTAAAGAGATTGAAGATTTTTATGGTAATTATGCATATAACACTGGATTTTCTATTAGGACTATGTTGAAGTCGAAGAATAATTCACAAAACAAGAAATCTGATAAGGTACATTATTTGCGTTATGTTTGTAACAAAGAAGGTTTCAAGAAGGGAAGTTTACTTAATCCTAACAACAGGCCAACAACAAACAGTCCACAGGTTATTGAGTTTGTGAAAGTGAAAGAAAAACCTGAGGAAAGGGTTGGTTGTAAAGCTGGAATATATTTGAAGCTGGATGAAGTTTTGAATGTGTATAAGATATATAGATGGGATGTGGATCACTGTCATCCATTACATAAACCAGAGCATTCGTGTTACCTTAGATCATTTCGAGAAGTAAATGAAGTTCAAGGACAACTAGCTCTTATAAATTCTAAAGCTGGAATGTCGATGAGAACGTCTTATGAAGTTATGGGTCAGGGAGTTGGAGGCACATAG

Protein sequence

>Msa0928630

MDLTSTSSDSGQLSVETSSLIHAESGQLSVTPLAMIHADSSQCYSPSNKESWKSLVFQSIKEIEDFYGNYAYNTGFSIRTMLKSKNNSQNKKSDKVHYLRYVCNKEGFKKGSLLNPNNRPTTNSPQVIEFVKVKEKPEERVGCKAGIYLKLDEVLNVYKIYRWDVDHCHPLHKPEHSCYLRSFREVNEVQGQLALINSKAGMSMRTSYEVMGQGVGGT*