Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0928650 | XP_039685680.1 | 90.500 | 800 | 70 | 2 | 1 | 794 | 1 | 800 | 0.0 | 1507 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0928650 | sp|Q9SZL8|FRS5_ARATH | 27.044 | 636 | 388 | 15 | 50 | 679 | 72 | 637 | 2.82e-68 | 244 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0928650 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0928650 | MtrunA17_Chr3g0088371 | 83.696 | 184 | 27 | 1 | 632 | 812 | 1 | 184 | 1.14e-103 | 317 |
| Msa0928650 | MtrunA17_Chr2g0324011 | 30.964 | 633 | 363 | 12 | 52 | 679 | 8 | 571 | 4.01e-101 | 325 |
| Msa0928650 | MtrunA17_Chr3g0082121 | 33.817 | 482 | 286 | 8 | 57 | 536 | 49 | 499 | 2.00e-86 | 289 |
| Msa0928650 | MtrunA17_Chr3g0082121 | 29.630 | 135 | 86 | 3 | 608 | 741 | 529 | 655 | 2.51e-12 | 70.5 |
| Msa0928650 | MtrunA17_Chr1g0202341 | 29.180 | 634 | 368 | 15 | 50 | 676 | 50 | 609 | 3.87e-81 | 274 |
| Msa0928650 | MtrunA17_Chr1g0203721 | 26.309 | 764 | 468 | 18 | 13 | 757 | 18 | 705 | 6.62e-77 | 267 |
| Msa0928650 | MtrunA17_Chr8g0363841 | 28.549 | 627 | 377 | 14 | 56 | 679 | 22 | 580 | 1.11e-76 | 262 |
| Msa0928650 | MtrunA17_Chr5g0448761 | 26.124 | 712 | 451 | 16 | 50 | 755 | 59 | 701 | 3.01e-72 | 252 |
| Msa0928650 | MtrunA17_Chr2g0296781 | 27.139 | 678 | 408 | 18 | 55 | 722 | 1 | 602 | 5.89e-71 | 248 |
| Msa0928650 | MtrunA17_Chr6g0458391 | 27.186 | 629 | 355 | 15 | 57 | 676 | 231 | 765 | 9.75e-66 | 234 |
| Msa0928650 | MtrunA17_Chr6g0477261 | 27.684 | 531 | 334 | 11 | 196 | 722 | 7 | 491 | 2.78e-64 | 228 |
| Msa0928650 | MtrunA17_Chr1g0164591 | 34.688 | 320 | 194 | 4 | 147 | 464 | 1 | 307 | 4.69e-63 | 215 |
| Msa0928650 | MtrunA17_Chr5g0441581 | 26.261 | 674 | 399 | 18 | 39 | 703 | 25 | 609 | 1.52e-62 | 223 |
| Msa0928650 | MtrunA17_Chr2g0287651 | 25.265 | 661 | 416 | 12 | 21 | 676 | 45 | 632 | 4.02e-59 | 216 |
| Msa0928650 | MtrunA17_Chr1g0207551 | 25.243 | 721 | 441 | 19 | 22 | 732 | 9 | 641 | 3.85e-57 | 210 |
| Msa0928650 | MtrunA17_Chr2g0329031 | 25.247 | 709 | 428 | 19 | 39 | 737 | 2 | 618 | 7.33e-57 | 208 |
| Msa0928650 | MtrunA17_Chr1g0172971 | 75.758 | 132 | 17 | 1 | 1 | 132 | 1 | 117 | 2.87e-56 | 202 |
| Msa0928650 | MtrunA17_Chr5g0440451 | 23.853 | 763 | 456 | 19 | 1 | 737 | 1 | 664 | 7.53e-55 | 204 |
| Msa0928650 | MtrunA17_Chr3g0080351 | 26.200 | 729 | 430 | 21 | 15 | 732 | 44 | 675 | 1.56e-54 | 202 |
| Msa0928650 | MtrunA17_Chr1g0196541 | 24.640 | 625 | 399 | 13 | 55 | 676 | 1 | 556 | 5.26e-54 | 199 |
| Msa0928650 | MtrunA17_Chr1g0198761 | 27.488 | 633 | 371 | 18 | 56 | 674 | 52 | 610 | 8.33e-54 | 199 |
| Msa0928650 | MtrunA17_Chr7g0258861 | 34.936 | 312 | 179 | 6 | 46 | 352 | 2 | 294 | 4.38e-53 | 187 |
| Msa0928650 | MtrunA17_Chr3g0118611 | 27.400 | 500 | 307 | 10 | 237 | 733 | 111 | 557 | 2.93e-52 | 195 |
| Msa0928650 | MtrunA17_Chr1g0203051 | 24.020 | 587 | 381 | 9 | 66 | 651 | 94 | 616 | 1.82e-51 | 191 |
| Msa0928650 | MtrunA17_Chr2g0276841 | 25.982 | 662 | 393 | 21 | 65 | 712 | 84 | 662 | 4.75e-48 | 182 |
| Msa0928650 | MtrunA17_Chr2g0287061 | 24.522 | 628 | 357 | 16 | 57 | 679 | 189 | 704 | 7.99e-48 | 182 |
| Msa0928650 | MtrunA17_Chr2g0290391 | 25.903 | 637 | 375 | 19 | 55 | 674 | 55 | 611 | 3.38e-46 | 176 |
| Msa0928650 | MtrunA17_Chr2g0291591 | 26.538 | 520 | 317 | 16 | 14 | 515 | 29 | 501 | 8.50e-44 | 167 |
| Msa0928650 | MtrunA17_Chr5g0448511 | 25.111 | 450 | 285 | 8 | 232 | 679 | 1 | 400 | 1.09e-43 | 166 |
| Msa0928650 | MtrunA17_Chr2g0291581 | 24.640 | 625 | 392 | 14 | 54 | 676 | 74 | 621 | 1.76e-43 | 168 |
| Msa0928650 | MtrunA17_Chr5g0431001 | 28.062 | 449 | 282 | 14 | 56 | 489 | 66 | 488 | 9.68e-42 | 160 |
| Msa0928650 | MtrunA17_Chr6g0475591 | 93.151 | 73 | 5 | 0 | 204 | 276 | 1 | 73 | 1.31e-41 | 146 |
| Msa0928650 | MtrunA17_Chr2g0294841 | 25.827 | 635 | 369 | 22 | 57 | 671 | 51 | 603 | 6.90e-37 | 149 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0928650 | AT4G38180.1 | 27.044 | 636 | 388 | 15 | 50 | 679 | 72 | 637 | 2.87e-69 | 244 |
| Msa0928650 | AT4G15090.1 | 25.546 | 732 | 457 | 18 | 66 | 787 | 66 | 719 | 1.31e-60 | 221 |
| Msa0928650 | AT4G15090.5 | 25.546 | 732 | 457 | 18 | 66 | 787 | 66 | 719 | 1.31e-60 | 221 |
| Msa0928650 | AT4G15090.3 | 25.546 | 732 | 457 | 18 | 66 | 787 | 66 | 719 | 1.31e-60 | 221 |
| Msa0928650 | AT4G15090.2 | 25.546 | 732 | 457 | 18 | 66 | 787 | 66 | 719 | 1.31e-60 | 221 |
| Msa0928650 | AT4G15090.4 | 25.546 | 732 | 457 | 18 | 66 | 787 | 66 | 719 | 1.31e-60 | 221 |
| Msa0928650 | AT3G06250.2 | 25.234 | 642 | 359 | 17 | 39 | 675 | 178 | 703 | 1.80e-52 | 196 |
| Msa0928650 | AT3G06250.1 | 25.234 | 642 | 359 | 17 | 39 | 675 | 178 | 703 | 1.80e-52 | 196 |
| Msa0928650 | AT3G06250.3 | 25.234 | 642 | 359 | 17 | 39 | 675 | 178 | 703 | 1.80e-52 | 196 |
| Msa0928650 | AT3G22170.2 | 24.158 | 683 | 420 | 16 | 48 | 722 | 67 | 659 | 7.98e-52 | 195 |
| Msa0928650 | AT3G22170.1 | 24.158 | 683 | 420 | 16 | 48 | 722 | 67 | 659 | 7.98e-52 | 195 |
| Msa0928650 | AT1G76320.3 | 24.929 | 706 | 431 | 20 | 57 | 756 | 3 | 615 | 7.72e-51 | 190 |
| Msa0928650 | AT1G76320.1 | 24.859 | 708 | 433 | 20 | 55 | 756 | 1 | 615 | 2.20e-50 | 189 |
| Msa0928650 | AT1G76320.4 | 24.859 | 708 | 433 | 20 | 55 | 756 | 1 | 615 | 2.20e-50 | 189 |
| Msa0928650 | AT1G76320.2 | 24.859 | 708 | 433 | 20 | 55 | 756 | 1 | 615 | 2.60e-50 | 189 |
| Msa0928650 | AT2G27110.3 | 24.874 | 595 | 386 | 15 | 229 | 817 | 36 | 575 | 1.22e-49 | 187 |
| Msa0928650 | AT2G27110.2 | 24.579 | 594 | 389 | 13 | 229 | 817 | 181 | 720 | 2.32e-49 | 187 |
| Msa0928650 | AT2G27110.1 | 24.579 | 594 | 389 | 13 | 229 | 817 | 181 | 720 | 2.32e-49 | 187 |
| Msa0928650 | AT5G18960.2 | 23.972 | 705 | 410 | 20 | 37 | 733 | 197 | 783 | 3.39e-48 | 184 |
| Msa0928650 | AT5G18960.1 | 23.972 | 705 | 410 | 20 | 37 | 733 | 197 | 783 | 3.39e-48 | 184 |
| Msa0928650 | AT1G10240.2 | 25.481 | 624 | 369 | 22 | 65 | 673 | 62 | 604 | 1.61e-44 | 171 |
| Msa0928650 | AT1G10240.1 | 25.481 | 624 | 369 | 22 | 65 | 673 | 62 | 604 | 1.61e-44 | 171 |
| Msa0928650 | AT4G38170.1 | 23.529 | 510 | 311 | 14 | 238 | 733 | 11 | 455 | 8.25e-44 | 167 |
| Msa0928650 | AT1G80010.1 | 25.312 | 640 | 379 | 24 | 57 | 676 | 101 | 661 | 7.63e-42 | 164 |
| Msa0928650 | AT5G28530.1 | 24.490 | 637 | 386 | 18 | 56 | 674 | 60 | 619 | 1.09e-40 | 160 |
| Msa0928650 | AT2G32250.5 | 23.342 | 754 | 444 | 22 | 24 | 769 | 13 | 640 | 3.92e-40 | 159 |
| Msa0928650 | AT2G32250.2 | 23.342 | 754 | 444 | 22 | 24 | 769 | 13 | 640 | 5.35e-40 | 159 |
| Msa0928650 | AT2G32250.4 | 23.342 | 754 | 444 | 22 | 24 | 769 | 13 | 640 | 5.35e-40 | 159 |
| Msa0928650 | AT2G32250.6 | 23.342 | 754 | 444 | 22 | 24 | 769 | 13 | 640 | 6.63e-40 | 159 |
| Msa0928650 | AT2G32250.1 | 23.342 | 754 | 444 | 22 | 24 | 769 | 13 | 640 | 6.63e-40 | 159 |
| Msa0928650 | AT2G32250.3 | 23.342 | 754 | 444 | 22 | 24 | 769 | 13 | 640 | 6.63e-40 | 159 |
| Msa0928650 | AT5G28530.3 | 24.333 | 637 | 383 | 19 | 56 | 674 | 60 | 615 | 7.79e-40 | 157 |
| Msa0928650 | AT5G28530.2 | 24.333 | 637 | 383 | 19 | 56 | 674 | 60 | 615 | 7.79e-40 | 157 |
| Msa0928650 | AT2G32250.7 | 23.440 | 721 | 420 | 21 | 57 | 769 | 3 | 599 | 1.82e-39 | 157 |
| Msa0928650 | AT2G32250.8 | 23.440 | 721 | 420 | 21 | 57 | 769 | 3 | 599 | 1.90e-39 | 157 |
| Msa0928650 | AT1G52520.1 | 23.237 | 624 | 399 | 17 | 57 | 676 | 91 | 638 | 1.09e-36 | 148 |
| Msa0928650 | AT4G19990.5 | 24.215 | 446 | 289 | 9 | 57 | 499 | 27 | 426 | 5.55e-31 | 130 |
| Msa0928650 | AT4G19990.5 | 35.052 | 97 | 53 | 2 | 607 | 703 | 497 | 583 | 4.17e-11 | 67.4 |
| Msa0928650 | AT4G19990.3 | 24.439 | 446 | 288 | 10 | 57 | 499 | 27 | 426 | 5.57e-31 | 130 |
| Msa0928650 | AT4G19990.3 | 35.052 | 97 | 53 | 2 | 607 | 703 | 497 | 583 | 4.14e-11 | 67.4 |
| Msa0928650 | AT4G19990.4 | 24.439 | 446 | 288 | 10 | 57 | 499 | 27 | 426 | 5.57e-31 | 130 |
| Msa0928650 | AT4G19990.4 | 35.052 | 97 | 53 | 2 | 607 | 703 | 497 | 583 | 4.14e-11 | 67.4 |
| Msa0928650 | AT4G19990.7 | 24.215 | 446 | 289 | 9 | 57 | 499 | 41 | 440 | 6.70e-31 | 130 |
| Msa0928650 | AT4G19990.7 | 37.113 | 97 | 51 | 3 | 607 | 703 | 511 | 597 | 4.29e-11 | 67.0 |
| Msa0928650 | AT4G19990.6 | 24.439 | 446 | 288 | 10 | 57 | 499 | 27 | 426 | 8.77e-31 | 130 |
| Msa0928650 | AT4G19990.6 | 37.113 | 97 | 51 | 3 | 607 | 703 | 497 | 583 | 4.51e-11 | 67.0 |
| Msa0928650 | AT4G19990.2 | 24.439 | 446 | 288 | 10 | 57 | 499 | 27 | 426 | 8.77e-31 | 130 |
| Msa0928650 | AT4G19990.2 | 37.113 | 97 | 51 | 3 | 607 | 703 | 497 | 583 | 4.51e-11 | 67.0 |
| Msa0928650 | AT4G19990.1 | 29.104 | 268 | 183 | 4 | 235 | 499 | 106 | 369 | 6.85e-30 | 127 |
| Msa0928650 | AT4G19990.1 | 37.113 | 97 | 51 | 3 | 607 | 703 | 440 | 526 | 4.20e-11 | 67.0 |
| Msa0928650 | AT5G28530.4 | 22.648 | 627 | 347 | 21 | 56 | 674 | 60 | 556 | 4.83e-23 | 105 |
| Msa0928650 | AT5G28530.5 | 22.488 | 627 | 344 | 22 | 56 | 674 | 60 | 552 | 2.73e-22 | 102 |
Find 117 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGCTGAGTTGGACTTTA+AGG | 0.133287 | 6_2:+74470285 | Msa0928650:CDS |
| AGTCGCTTCTTTGACTTAAT+TGG | 0.149305 | 6_2:-74471105 | None:intergenic |
| TAAATTTCAGCTGCCTTTAT+TGG | 0.156227 | 6_2:+74469695 | Msa0928650:intron |
| CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 6_2:+74470243 | Msa0928650:CDS |
| AATCGTCTGTGGTTTCTTAT+TGG | 0.195298 | 6_2:-74469822 | None:intergenic |
| TTCTTTGACTTAATTGGATT+TGG | 0.266522 | 6_2:-74471099 | None:intergenic |
| TCTGTTGTTGGCCTGTTGTT+AGG | 0.292589 | 6_2:-74468654 | None:intergenic |
| ATGTATTGATGATTATATTT+TGG | 0.303619 | 6_2:+74471343 | Msa0928650:three_prime_UTR |
| CGATCATGATCTTCAAAACT+TGG | 0.305304 | 6_2:-74470583 | None:intergenic |
| TTACTTCTCGAAATGATCTA+AGG | 0.311482 | 6_2:-74468845 | None:intergenic |
| GCCTTCGAATGTTGATGTTT+TGG | 0.322848 | 6_2:+74470534 | Msa0928650:CDS |
| CAACTAGATTATTCTCTATT+CGG | 0.323831 | 6_2:+74469161 | Msa0928650:CDS |
| TTGAAGATCTTGGAGTTCTT+AGG | 0.331625 | 6_2:+74470703 | Msa0928650:CDS |
| GCATACGATTTGCGTAAGTT+TGG | 0.338878 | 6_2:-74470099 | None:intergenic |
| GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 6_2:-74469211 | None:intergenic |
| ATGATTGTCAAAACCAATAA+AGG | 0.357876 | 6_2:-74469708 | None:intergenic |
| CTCGACGGTGTTCTTGAAGC+TGG | 0.383392 | 6_2:+74470943 | Msa0928650:CDS |
| TTTGTTTCTTCCGATTGATA+AGG | 0.384635 | 6_2:-74471167 | None:intergenic |
| AACAATAAATATCGGCCATT+AGG | 0.388497 | 6_2:+74469218 | Msa0928650:CDS |
| ACCGAACAAACAATAAATAT+CGG | 0.389395 | 6_2:+74469210 | Msa0928650:CDS |
| GAGAACGTCTTATGAAGTTA+TGG | 0.394356 | 6_2:+74468920 | Msa0928650:CDS |
| TTTGGTCTTTCTTTGAACTT+TGG | 0.398856 | 6_2:-74471081 | None:intergenic |
| TTCCTTCAAATACTATTATG+AGG | 0.399583 | 6_2:+74470417 | Msa0928650:CDS |
| GAAGGCCTACCTCAGACTTT+AGG | 0.402909 | 6_2:+74470068 | Msa0928650:CDS |
| CATGTCGTATGTTTGAGAAC+AGG | 0.415108 | 6_2:+74470659 | Msa0928650:CDS |
| GTCTTATGAAGTTATGGGTC+AGG | 0.415385 | 6_2:+74468926 | Msa0928650:CDS |
| GAAGTTATGGGTCAGGGAGT+TGG | 0.426260 | 6_2:+74468933 | Msa0928650:CDS |
| CGTTATGTTTGTAACAAAGA+AGG | 0.427485 | 6_2:+74468606 | Msa0928650:CDS |
| AAAACACCTGGAAAACTATT+CGG | 0.428349 | 6_2:-74469881 | None:intergenic |
| GCTGTTGGTGAAACATCTGC+TGG | 0.428855 | 6_2:+74471042 | Msa0928650:CDS |
| CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 6_2:+74468858 | Msa0928650:CDS |
| TTGATATCGTTGTGCTTGAC+TGG | 0.433430 | 6_2:-74470851 | None:intergenic |
| GAGGAGTTGCTTCTTTCTAA+AGG | 0.437852 | 6_2:+74470976 | Msa0928650:CDS |
| TCCATGATTCTTTATTGCTA+GGG | 0.444266 | 6_2:-74468443 | None:intergenic |
| TTCCATGATTCTTTATTGCT+AGG | 0.445442 | 6_2:-74468444 | None:intergenic |
| TTCTTTGAACTTTGGTGCGG+TGG | 0.447203 | 6_2:-74471073 | None:intergenic |
| GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 6_2:+74468723 | Msa0928650:CDS |
| TATGCATTGGTCTTCAGCTT+GGG | 0.450920 | 6_2:+74470117 | Msa0928650:CDS |
| ATGTGTATAAGATATATAGA+TGG | 0.452819 | 6_2:+74468775 | Msa0928650:CDS |
| ACATCAACTTCATCTGATAG+TGG | 0.459514 | 6_2:+74468318 | Msa0928650:CDS |
| CTTGCTTTGCATTTATTCAC+AGG | 0.460007 | 6_2:+74470383 | Msa0928650:CDS |
| GCTCTTATAAATTCTAAAGC+TGG | 0.462891 | 6_2:+74468888 | Msa0928650:CDS |
| GACCGCATCAGCTGACTGTT+GGG | 0.463150 | 6_2:-74470337 | None:intergenic |
| ACCTGTGGACTGTCTGTTGT+TGG | 0.465317 | 6_2:-74468666 | None:intergenic |
| AGAACGTCTTATGAAGTTAT+GGG | 0.466325 | 6_2:+74468921 | Msa0928650:CDS |
| GTTTACTTAATCCTAACAAC+AGG | 0.470860 | 6_2:+74468643 | Msa0928650:CDS |
| CGCTTTAAAACATATTGTCC+AGG | 0.471916 | 6_2:-74470760 | None:intergenic |
| GGCAGAAATTCCTTATCAAT+CGG | 0.471938 | 6_2:+74471157 | Msa0928650:CDS |
| ATCATGATCGATTTGATGAA+AGG | 0.476999 | 6_2:+74470596 | Msa0928650:CDS |
| GTATGCATTGGTCTTCAGCT+TGG | 0.479582 | 6_2:+74470116 | Msa0928650:CDS |
| TTTAAGTCTGAAAACCGAAA+AGG | 0.483010 | 6_2:-74468972 | None:intergenic |
| CTCCTCATAATAGTATTTGA+AGG | 0.485089 | 6_2:-74470419 | None:intergenic |
| CTTTCTAAAGGTATTCGTAC+AGG | 0.486879 | 6_2:+74470988 | Msa0928650:CDS |
| GATCATGATCTTCAAAACTT+GGG | 0.487945 | 6_2:-74470582 | None:intergenic |
| CATTCTTTGAAGACAATACC+TGG | 0.489494 | 6_2:+74470742 | Msa0928650:CDS |
| TATGAGGAGGACACAACAAA+AGG | 0.490908 | 6_2:+74470433 | Msa0928650:CDS |
| GTCTTCAGTGCCAACATTGA+CGG | 0.491796 | 6_2:-74470827 | None:intergenic |
| TTGAAGACTTAGATGGCGTC+GGG | 0.493598 | 6_2:-74471011 | None:intergenic |
| CTGTTGGTGAAACATCTGCT+GGG | 0.493682 | 6_2:+74471043 | Msa0928650:CDS |
| ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 6_2:+74470257 | Msa0928650:CDS |
| CCCCTAGCAATAAAGAATCA+TGG | 0.497001 | 6_2:+74468442 | Msa0928650:CDS |
| TGAATAAATGCAAAGCAAGA+AGG | 0.503349 | 6_2:-74470379 | None:intergenic |
| TCTTTGAACTTTGGTGCGGT+GGG | 0.503874 | 6_2:-74471072 | None:intergenic |
| TTACAACCAACCCTTTCCTC+AGG | 0.505082 | 6_2:-74468717 | None:intergenic |
| AGCTGGAATATATTTGAAGC+TGG | 0.507410 | 6_2:+74468740 | Msa0928650:CDS |
| GAGGGATAATCATGCTGAGT+TGG | 0.508852 | 6_2:+74470276 | Msa0928650:CDS |
| CTAAGGTAACACGAATGCTC+TGG | 0.517941 | 6_2:-74468828 | None:intergenic |
| GAATAAATGCAAAGCAAGAA+GGG | 0.521406 | 6_2:-74470378 | None:intergenic |
| GTCAGCATGAATCATTGCTA+GGG | 0.522802 | 6_2:-74468403 | None:intergenic |
| GGTAATTATGCATATAACAC+TGG | 0.523547 | 6_2:+74468510 | Msa0928650:CDS |
| TAACAAAGAAGGTTTCAAGA+AGG | 0.525236 | 6_2:+74468617 | Msa0928650:CDS |
| TAAGATATATAGATGGGATG+TGG | 0.528498 | 6_2:+74468782 | Msa0928650:CDS |
| CATAATAGTATTTGAAGGAA+AGG | 0.529686 | 6_2:-74470414 | None:intergenic |
| TGGGCTTTGTTCATGGCACA+TGG | 0.532868 | 6_2:+74469907 | Msa0928650:CDS |
| GAATGCTCTGGTTTATGTAA+TGG | 0.534744 | 6_2:-74468816 | None:intergenic |
| CCATGATTCTTTATTGCTAG+GGG | 0.537011 | 6_2:-74468442 | None:intergenic |
| TGTCAGCATGAATCATTGCT+AGG | 0.540740 | 6_2:-74468404 | None:intergenic |
| ATGAGGAGGACACAACAAAA+GGG | 0.542065 | 6_2:+74470434 | Msa0928650:CDS |
| AATCGAACAAGTGAGTGGTC+TGG | 0.543268 | 6_2:-74470220 | None:intergenic |
| AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 6_2:+74468618 | Msa0928650:CDS |
| GTTATGGGTCAGGGAGTTGG+AGG | 0.547221 | 6_2:+74468936 | Msa0928650:CDS |
| AACACAATAACGCACTAGCC+TGG | 0.552106 | 6_2:-74469853 | None:intergenic |
| AAGATCTTGGAGTTCTTAGG+TGG | 0.553166 | 6_2:+74470706 | Msa0928650:CDS |
| ATGTCGTATGTTTGAGAACA+GGG | 0.560861 | 6_2:+74470660 | Msa0928650:CDS |
| GGCCTACCTCAGACTTTAGG+TGG | 0.565384 | 6_2:+74470071 | Msa0928650:CDS |
| TCTTCAAAAGTAGCTGCTGT+TGG | 0.568528 | 6_2:+74471027 | Msa0928650:CDS |
| GGACCGCATCAGCTGACTGT+TGG | 0.570066 | 6_2:-74470338 | None:intergenic |
| TGAAGCTTTATCAGTGATTG+TGG | 0.572057 | 6_2:+74471200 | Msa0928650:CDS |
| TTTGAAGACTTAGATGGCGT+CGG | 0.575863 | 6_2:-74471012 | None:intergenic |
| ATCATGATCTTCAAAACTTG+GGG | 0.577988 | 6_2:-74470581 | None:intergenic |
| ATGAAATCGACCGTCAATGT+TGG | 0.583819 | 6_2:+74470817 | Msa0928650:CDS |
| ATCCCAACAGTCAGCTGATG+CGG | 0.597403 | 6_2:+74470335 | Msa0928650:CDS |
| CTTACGCAAATCGTATGCAT+TGG | 0.597846 | 6_2:+74470104 | Msa0928650:CDS |
| TATGATGATGCTGATAATGA+CGG | 0.599988 | 6_2:+74470511 | Msa0928650:CDS |
| TGTGTATAAGATATATAGAT+GGG | 0.601002 | 6_2:+74468776 | Msa0928650:CDS |
| TCACTGATTCATGCTGAGAG+TGG | 0.606950 | 6_2:+74468363 | Msa0928650:CDS |
| TCCAAAACATCAACATTCGA+AGG | 0.607058 | 6_2:-74470535 | None:intergenic |
| CTTCAAATACTATTATGAGG+AGG | 0.607664 | 6_2:+74470420 | Msa0928650:CDS |
| TCTTATGAAGTTATGGGTCA+GGG | 0.609153 | 6_2:+74468927 | Msa0928650:CDS |
| GCCAACAACAGACAGTCCAC+AGG | 0.619933 | 6_2:+74468665 | Msa0928650:CDS |
| ATGATGATGCTGATAATGAC+GGG | 0.620534 | 6_2:+74470512 | Msa0928650:CDS |
| TTCACAAACTCAATAACCTG+TGG | 0.626760 | 6_2:-74468681 | None:intergenic |
| TGTTGGTGAAACATCTGCTG+GGG | 0.639082 | 6_2:+74471044 | Msa0928650:CDS |
| CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 6_2:+74470258 | Msa0928650:CDS |
| GAAGCTTTATCAGTGATTGT+GGG | 0.649096 | 6_2:+74471201 | Msa0928650:CDS |
| TGGTCTGTATAAATCGTCTG+TGG | 0.650424 | 6_2:-74469833 | None:intergenic |
| ACAAAACAAGAAATCTGATG+AGG | 0.651736 | 6_2:+74468572 | Msa0928650:CDS |
| GATTTCATCTTATCGACAGA+CGG | 0.652942 | 6_2:-74470802 | None:intergenic |
| GACAAGCCACCTAAAGTCTG+AGG | 0.653221 | 6_2:-74470077 | None:intergenic |
| TGTCGTATGTTTGAGAACAG+GGG | 0.653807 | 6_2:+74470661 | Msa0928650:CDS |
| TAAAGAATCGAACAAGTGAG+TGG | 0.654901 | 6_2:-74470225 | None:intergenic |
| TCTTTCTTTGAACTTTGGTG+CGG | 0.659854 | 6_2:-74471076 | None:intergenic |
| AATAAATGCAAAGCAAGAAG+GGG | 0.664515 | 6_2:-74470377 | None:intergenic |
| TCAGCATGAATCATTGCTAG+GGG | 0.681156 | 6_2:-74468402 | None:intergenic |
| AGCCACCTAAAGTCTGAGGT+AGG | 0.684957 | 6_2:-74470073 | None:intergenic |
| AGGGGTGTACTTGTTTACAA+CGG | 0.695086 | 6_2:-74470359 | None:intergenic |
| ACAGACGATTTATACAGACC+AGG | 0.720235 | 6_2:+74469835 | Msa0928650:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATTTTGATATGATTTAT+TGG | + | chr6_2:74471290-74471309 | Msa0928650:three_prime_UTR | 10.0% |
| !!! | TTTTGATGAGTTAAATAATT+TGG | + | chr6_2:74469976-74469995 | Msa0928650:CDS | 15.0% |
| !!! | ATTGATTGTTTTTATAAGTT+TGG | + | chr6_2:74471230-74471249 | Msa0928650:exon | 15.0% |
| !!! | TTTTATAAGTTTGGTTTTTT+AGG | + | chr6_2:74471239-74471258 | Msa0928650:three_prime_UTR | 15.0% |
| !!! | AAAGAGATTGAAGATTTTTA+TGG | + | chr6_2:74468489-74468508 | Msa0928650:CDS | 20.0% |
| !! | ATGTGTATAAGATATATAGA+TGG | + | chr6_2:74468775-74468794 | Msa0928650:CDS | 20.0% |
| !! | TGTGTATAAGATATATAGAT+GGG | + | chr6_2:74468776-74468795 | Msa0928650:CDS | 20.0% |
| !! | TGAATATCATAGTAAAAAGA+TGG | - | chr6_2:74469089-74469108 | None:intergenic | 20.0% |
| !!! | TTAATTTCATTAAGTTGTTC+TGG | + | chr6_2:74469279-74469298 | Msa0928650:intron | 20.0% |
| !! | ACATACTTATTAGAATACTT+AGG | + | chr6_2:74469509-74469528 | Msa0928650:intron | 20.0% |
| !!! | TTCTTATAATTTGTGATTAC+AGG | + | chr6_2:74469572-74469591 | Msa0928650:intron | 20.0% |
| !!! | AATCAGATTTTGACTATAAT+TGG | + | chr6_2:74470017-74470036 | Msa0928650:CDS | 20.0% |
| !!! | ATCAGATTTTGACTATAATT+GGG | + | chr6_2:74470018-74470037 | Msa0928650:CDS | 20.0% |
| !!! | ATGATGATAAATTGTTTTGA+TGG | + | chr6_2:74470046-74470065 | Msa0928650:CDS | 20.0% |
| !! | CTTATAAAAACAATCAATCA+GGG | - | chr6_2:74471228-74471247 | None:intergenic | 20.0% |
| !! | ACTTATAAAAACAATCAATC+AGG | - | chr6_2:74471229-74471248 | None:intergenic | 20.0% |
| !! | ATAACACTGGATTTTCTATT+AGG | + | chr6_2:74468523-74468542 | Msa0928650:CDS | 25.0% |
| !!! | AAGACATAGCTAGTATTTTT+TGG | + | chr6_2:74469123-74469142 | Msa0928650:CDS | 25.0% |
| ! | CAACTAGATTATTCTCTATT+CGG | + | chr6_2:74469161-74469180 | Msa0928650:CDS | 25.0% |
| ! | ACCGAACAAACAATAAATAT+CGG | + | chr6_2:74469210-74469229 | Msa0928650:CDS | 25.0% |
| ! | AGTAAAAAACACTAACCTAA+TGG | - | chr6_2:74469236-74469255 | None:intergenic | 25.0% |
| ! | TCTTACTTATTTGAACTACA+CGG | + | chr6_2:74469355-74469374 | Msa0928650:intron | 25.0% |
| !! | TTTAACCATGTTGTTTGTTT+AGG | + | chr6_2:74469379-74469398 | Msa0928650:intron | 25.0% |
| !! | TTAACCATGTTGTTTGTTTA+GGG | + | chr6_2:74469380-74469399 | Msa0928650:intron | 25.0% |
| ! | CAAACTTAAATGATGTTGAT+TGG | + | chr6_2:74469433-74469452 | Msa0928650:intron | 25.0% |
| !!! | ATTTATATTTTGAACTGCCT+AGG | + | chr6_2:74469457-74469476 | Msa0928650:intron | 25.0% |
| !! | TGTTGTATTTTGTTCTGATA+TGG | + | chr6_2:74469666-74469685 | Msa0928650:intron | 25.0% |
| ! | ATGATTGTCAAAACCAATAA+AGG | - | chr6_2:74469711-74469730 | None:intergenic | 25.0% |
| !!! | TGATAAATTGTTTTGATGGA+AGG | + | chr6_2:74470050-74470069 | Msa0928650:CDS | 25.0% |
| ! | CTTTAGTCATTTCAACATTA+TGG | + | chr6_2:74470243-74470262 | Msa0928650:CDS | 25.0% |
| ! | CATAATAGTATTTGAAGGAA+AGG | - | chr6_2:74470417-74470436 | None:intergenic | 25.0% |
| ! | TTCCTTCAAATACTATTATG+AGG | + | chr6_2:74470417-74470436 | Msa0928650:CDS | 25.0% |
| !! | AACTTTGAAAAACTTCTCAA+AGG | - | chr6_2:74470464-74470483 | None:intergenic | 25.0% |
| !! | CAAAGTTTTCACAATTGATA+AGG | + | chr6_2:74470477-74470496 | Msa0928650:CDS | 25.0% |
| !! | AGAAAAATTTTAGATGACTC+TGG | - | chr6_2:74470925-74470944 | None:intergenic | 25.0% |
| !!! | TCATCTAAAATTTTTCTCGA+CGG | + | chr6_2:74470928-74470947 | Msa0928650:CDS | 25.0% |
| !! | TTCTTTGACTTAATTGGATT+TGG | - | chr6_2:74471102-74471121 | None:intergenic | 25.0% |
| ! | ATTATGAAAAAGCTAGAGAA+AGG | + | chr6_2:74471136-74471155 | Msa0928650:CDS | 25.0% |
| TCCATGATTCTTTATTGCTA+GGG | - | chr6_2:74468446-74468465 | None:intergenic | 30.0% | |
| TTCCATGATTCTTTATTGCT+AGG | - | chr6_2:74468447-74468466 | None:intergenic | 30.0% | |
| GGTAATTATGCATATAACAC+TGG | + | chr6_2:74468510-74468529 | Msa0928650:CDS | 30.0% | |
| ACAAAACAAGAAATCTGATG+AGG | + | chr6_2:74468572-74468591 | Msa0928650:CDS | 30.0% | |
| CGTTATGTTTGTAACAAAGA+AGG | + | chr6_2:74468606-74468625 | Msa0928650:CDS | 30.0% | |
| TAACAAAGAAGGTTTCAAGA+AGG | + | chr6_2:74468617-74468636 | Msa0928650:CDS | 30.0% | |
| AACAAAGAAGGTTTCAAGAA+GGG | + | chr6_2:74468618-74468637 | Msa0928650:CDS | 30.0% | |
| GTTTACTTAATCCTAACAAC+AGG | + | chr6_2:74468643-74468662 | Msa0928650:CDS | 30.0% | |
| TAAGATATATAGATGGGATG+TGG | + | chr6_2:74468782-74468801 | Msa0928650:CDS | 30.0% | |
| TTACTTCTCGAAATGATCTA+AGG | - | chr6_2:74468848-74468867 | None:intergenic | 30.0% | |
| !! | GCTCTTATAAATTCTAAAGC+TGG | + | chr6_2:74468888-74468907 | Msa0928650:CDS | 30.0% |
| AGAACGTCTTATGAAGTTAT+GGG | + | chr6_2:74468921-74468940 | Msa0928650:CDS | 30.0% | |
| TTTAAGTCTGAAAACCGAAA+AGG | - | chr6_2:74468975-74468994 | None:intergenic | 30.0% | |
| GCCGATATTTATTGTTTGTT+CGG | - | chr6_2:74469214-74469233 | None:intergenic | 30.0% | |
| AACAATAAATATCGGCCATT+AGG | + | chr6_2:74469218-74469237 | Msa0928650:CDS | 30.0% | |
| !!! | TAGTGTTTTTTACTTCTCTC+AGG | + | chr6_2:74469242-74469261 | Msa0928650:intron | 30.0% |
| CTTACTTATTTGAACTACAC+GGG | + | chr6_2:74469356-74469375 | Msa0928650:intron | 30.0% | |
| AAATCCCTAAACAAACAACA+TGG | - | chr6_2:74469387-74469406 | None:intergenic | 30.0% | |
| TAAGTTTGTCTCAAACCAAA+TGG | - | chr6_2:74469421-74469440 | None:intergenic | 30.0% | |
| TAAATTTCAGCTGCCTTTAT+TGG | + | chr6_2:74469695-74469714 | Msa0928650:intron | 30.0% | |
| AAAACACCTGGAAAACTATT+CGG | - | chr6_2:74469884-74469903 | None:intergenic | 30.0% | |
| GAGAATGCAAAGAAAAATCT+TGG | + | chr6_2:74469932-74469951 | Msa0928650:CDS | 30.0% | |
| AATAAATGCAAAGCAAGAAG+GGG | - | chr6_2:74470380-74470399 | None:intergenic | 30.0% | |
| GAATAAATGCAAAGCAAGAA+GGG | - | chr6_2:74470381-74470400 | None:intergenic | 30.0% | |
| TGAATAAATGCAAAGCAAGA+AGG | - | chr6_2:74470382-74470401 | None:intergenic | 30.0% | |
| CTCCTCATAATAGTATTTGA+AGG | - | chr6_2:74470422-74470441 | None:intergenic | 30.0% | |
| CTTCAAATACTATTATGAGG+AGG | + | chr6_2:74470420-74470439 | Msa0928650:CDS | 30.0% | |
| ! | TATGATGATGCTGATAATGA+CGG | + | chr6_2:74470511-74470530 | Msa0928650:CDS | 30.0% |
| ATCATGATCTTCAAAACTTG+GGG | - | chr6_2:74470584-74470603 | None:intergenic | 30.0% | |
| GATCATGATCTTCAAAACTT+GGG | - | chr6_2:74470585-74470604 | None:intergenic | 30.0% | |
| !! | ATCATGATCGATTTGATGAA+AGG | + | chr6_2:74470596-74470615 | Msa0928650:CDS | 30.0% |
| !!! | GACAATATGTTTTAAAGCGT+TGG | + | chr6_2:74470764-74470783 | Msa0928650:CDS | 30.0% |
| ! | TTTGGTCTTTCTTTGAACTT+TGG | - | chr6_2:74471084-74471103 | None:intergenic | 30.0% |
| ! | TTTGTTTCTTCCGATTGATA+AGG | - | chr6_2:74471170-74471189 | None:intergenic | 30.0% |
| ACATCAACTTCATCTGATAG+TGG | + | chr6_2:74468318-74468337 | Msa0928650:CDS | 35.0% | |
| CCATGATTCTTTATTGCTAG+GGG | - | chr6_2:74468445-74468464 | None:intergenic | 35.0% | |
| TTCACAAACTCAATAACCTG+TGG | - | chr6_2:74468684-74468703 | None:intergenic | 35.0% | |
| GAAAGTGAAAGAAAAACCTG+AGG | + | chr6_2:74468701-74468720 | Msa0928650:CDS | 35.0% | |
| TGAAAGAAAAACCTGAGGAA+AGG | + | chr6_2:74468706-74468725 | Msa0928650:CDS | 35.0% | |
| GAAAGAAAAACCTGAGGAAA+GGG | + | chr6_2:74468707-74468726 | Msa0928650:CDS | 35.0% | |
| ! | AGCTGGAATATATTTGAAGC+TGG | + | chr6_2:74468740-74468759 | Msa0928650:CDS | 35.0% |
| ! | GAATGCTCTGGTTTATGTAA+TGG | - | chr6_2:74468819-74468838 | None:intergenic | 35.0% |
| CGAGAAGTAAATGAAGTTCA+AGG | + | chr6_2:74468858-74468877 | Msa0928650:CDS | 35.0% | |
| GAGAACGTCTTATGAAGTTA+TGG | + | chr6_2:74468920-74468939 | Msa0928650:CDS | 35.0% | |
| TCTTATGAAGTTATGGGTCA+GGG | + | chr6_2:74468927-74468946 | Msa0928650:CDS | 35.0% | |
| GACAATTCGTCAAAAAGAGA+TGG | + | chr6_2:74469007-74469026 | Msa0928650:CDS | 35.0% | |
| AATTCGTCAAAAAGAGATGG+TGG | + | chr6_2:74469010-74469029 | Msa0928650:CDS | 35.0% | |
| GTAAAAAGATGGTTTCGAGA+GGG | - | chr6_2:74469078-74469097 | None:intergenic | 35.0% | |
| AGTAAAAAGATGGTTTCGAG+AGG | - | chr6_2:74469079-74469098 | None:intergenic | 35.0% | |
| !!! | GCTAGTATTTTTTGGTCAGA+TGG | + | chr6_2:74469131-74469150 | Msa0928650:CDS | 35.0% |
| TAAGACCTATAGTCAATCCT+AGG | - | chr6_2:74469340-74469359 | None:intergenic | 35.0% | |
| ! | ATTTAGTTTACGCATTGCTG+AGG | + | chr6_2:74469543-74469562 | Msa0928650:intron | 35.0% |
| !!! | CATCGAAAGAGTGTTTTGTT+TGG | + | chr6_2:74469728-74469747 | Msa0928650:CDS | 35.0% |
| AATCGTCTGTGGTTTCTTAT+TGG | - | chr6_2:74469825-74469844 | None:intergenic | 35.0% | |
| ! | TCAATTCCGAATAGTTTTCC+AGG | + | chr6_2:74469875-74469894 | Msa0928650:CDS | 35.0% |
| ! | AGTTTTCCAGGTGTTTTTCA+TGG | + | chr6_2:74469887-74469906 | Msa0928650:CDS | 35.0% |
| ! | GTTTTCCAGGTGTTTTTCAT+GGG | + | chr6_2:74469888-74469907 | Msa0928650:CDS | 35.0% |
| !!! | TTTTTCATGGGCTTTGTTCA+TGG | + | chr6_2:74469900-74469919 | Msa0928650:CDS | 35.0% |
| ! | TCTTTCAATGCTTTTCTTCG+TGG | + | chr6_2:74470187-74470206 | Msa0928650:CDS | 35.0% |
| TAAAGAATCGAACAAGTGAG+TGG | - | chr6_2:74470228-74470247 | None:intergenic | 35.0% | |
| ACATTATGGTTCAGAGAATG+AGG | + | chr6_2:74470257-74470276 | Msa0928650:CDS | 35.0% | |
| CATTATGGTTCAGAGAATGA+GGG | + | chr6_2:74470258-74470277 | Msa0928650:CDS | 35.0% | |
| CTTGCTTTGCATTTATTCAC+AGG | + | chr6_2:74470383-74470402 | Msa0928650:CDS | 35.0% | |
| ! | ATGATGATGCTGATAATGAC+GGG | + | chr6_2:74470512-74470531 | Msa0928650:CDS | 35.0% |
| TCCAAAACATCAACATTCGA+AGG | - | chr6_2:74470538-74470557 | None:intergenic | 35.0% | |
| CGATCATGATCTTCAAAACT+TGG | - | chr6_2:74470586-74470605 | None:intergenic | 35.0% | |
| ATGTCGTATGTTTGAGAACA+GGG | + | chr6_2:74470660-74470679 | Msa0928650:CDS | 35.0% | |
| !!! | TCGACATGTTTTGAAGATCT+TGG | + | chr6_2:74470693-74470712 | Msa0928650:CDS | 35.0% |
| TTGAAGATCTTGGAGTTCTT+AGG | + | chr6_2:74470703-74470722 | Msa0928650:CDS | 35.0% | |
| ! | CATTCTTTGAAGACAATACC+TGG | + | chr6_2:74470742-74470761 | Msa0928650:CDS | 35.0% |
| !! | CGCTTTAAAACATATTGTCC+AGG | - | chr6_2:74470763-74470782 | None:intergenic | 35.0% |
| GATTTCATCTTATCGACAGA+CGG | - | chr6_2:74470805-74470824 | None:intergenic | 35.0% | |
| TGTTCTTGAAGCTGGAAAAA+AGG | + | chr6_2:74470951-74470970 | Msa0928650:CDS | 35.0% | |
| !! | CTTTCTAAAGGTATTCGTAC+AGG | + | chr6_2:74470988-74471007 | Msa0928650:CDS | 35.0% |
| !!! | GCTACTTTTGAAGACTTAGA+TGG | - | chr6_2:74471021-74471040 | None:intergenic | 35.0% |
| TCTTTCTTTGAACTTTGGTG+CGG | - | chr6_2:74471079-74471098 | None:intergenic | 35.0% | |
| ! | AGTCGCTTCTTTGACTTAAT+TGG | - | chr6_2:74471108-74471127 | None:intergenic | 35.0% |
| GGCAGAAATTCCTTATCAAT+CGG | + | chr6_2:74471157-74471176 | Msa0928650:CDS | 35.0% | |
| ! | TGAAGCTTTATCAGTGATTG+TGG | + | chr6_2:74471200-74471219 | Msa0928650:CDS | 35.0% |
| ! | GAAGCTTTATCAGTGATTGT+GGG | + | chr6_2:74471201-74471220 | Msa0928650:CDS | 35.0% |
| TCAGCATGAATCATTGCTAG+GGG | - | chr6_2:74468405-74468424 | None:intergenic | 40.0% | |
| GTCAGCATGAATCATTGCTA+GGG | - | chr6_2:74468406-74468425 | None:intergenic | 40.0% | |
| TGTCAGCATGAATCATTGCT+AGG | - | chr6_2:74468407-74468426 | None:intergenic | 40.0% | |
| CCCCTAGCAATAAAGAATCA+TGG | + | chr6_2:74468442-74468461 | Msa0928650:CDS | 40.0% | |
| GTCTTATGAAGTTATGGGTC+AGG | + | chr6_2:74468926-74468945 | Msa0928650:CDS | 40.0% | |
| ! | GCACAGAGAATCTTCCTTTT+CGG | + | chr6_2:74468958-74468977 | Msa0928650:CDS | 40.0% |
| ! | CAGTACATTTTGAACTGCCT+AGG | + | chr6_2:74469320-74469339 | Msa0928650:intron | 40.0% |
| AACTGCCTAGGATTGACTAT+AGG | + | chr6_2:74469332-74469351 | Msa0928650:intron | 40.0% | |
| ! | ATTTTCTCGCTTCTGCCATT+TGG | + | chr6_2:74469403-74469422 | Msa0928650:intron | 40.0% |
| TCACACAAGACAAAATGCCT+AGG | - | chr6_2:74469477-74469496 | None:intergenic | 40.0% | |
| !!! | AGACAGCAGCTACTTTTGAT+TGG | + | chr6_2:74469771-74469790 | Msa0928650:CDS | 40.0% |
| TGGTCTGTATAAATCGTCTG+TGG | - | chr6_2:74469836-74469855 | None:intergenic | 40.0% | |
| ACAGACGATTTATACAGACC+AGG | + | chr6_2:74469835-74469854 | Msa0928650:CDS | 40.0% | |
| GCATACGATTTGCGTAAGTT+TGG | - | chr6_2:74470102-74470121 | None:intergenic | 40.0% | |
| CTTACGCAAATCGTATGCAT+TGG | + | chr6_2:74470104-74470123 | Msa0928650:CDS | 40.0% | |
| !! | TATGCATTGGTCTTCAGCTT+GGG | + | chr6_2:74470117-74470136 | Msa0928650:CDS | 40.0% |
| ! | GTCAAGTCACATTTTACAGC+TGG | + | chr6_2:74470139-74470158 | Msa0928650:CDS | 40.0% |
| ! | TCATGCTGAGTTGGACTTTA+AGG | + | chr6_2:74470285-74470304 | Msa0928650:CDS | 40.0% |
| ! | AGGGGTGTACTTGTTTACAA+CGG | - | chr6_2:74470362-74470381 | None:intergenic | 40.0% |
| TATGAGGAGGACACAACAAA+AGG | + | chr6_2:74470433-74470452 | Msa0928650:CDS | 40.0% | |
| ATGAGGAGGACACAACAAAA+GGG | + | chr6_2:74470434-74470453 | Msa0928650:CDS | 40.0% | |
| ! | GCCTTCGAATGTTGATGTTT+TGG | + | chr6_2:74470534-74470553 | Msa0928650:CDS | 40.0% |
| CATGTCGTATGTTTGAGAAC+AGG | + | chr6_2:74470659-74470678 | Msa0928650:CDS | 40.0% | |
| TGTCGTATGTTTGAGAACAG+GGG | + | chr6_2:74470661-74470680 | Msa0928650:CDS | 40.0% | |
| AAGATCTTGGAGTTCTTAGG+TGG | + | chr6_2:74470706-74470725 | Msa0928650:CDS | 40.0% | |
| ATGAAATCGACCGTCAATGT+TGG | + | chr6_2:74470817-74470836 | Msa0928650:CDS | 40.0% | |
| TTGATATCGTTGTGCTTGAC+TGG | - | chr6_2:74470854-74470873 | None:intergenic | 40.0% | |
| GAGGAGTTGCTTCTTTCTAA+AGG | + | chr6_2:74470976-74470995 | Msa0928650:CDS | 40.0% | |
| TTTGAAGACTTAGATGGCGT+CGG | - | chr6_2:74471015-74471034 | None:intergenic | 40.0% | |
| TCTTCAAAAGTAGCTGCTGT+TGG | + | chr6_2:74471027-74471046 | Msa0928650:CDS | 40.0% | |
| !! | TCACTGATTCATGCTGAGAG+TGG | + | chr6_2:74468363-74468382 | Msa0928650:CDS | 45.0% |
| ! | TCTGTTGTTGGCCTGTTGTT+AGG | - | chr6_2:74468657-74468676 | None:intergenic | 45.0% |
| GAAAAACCTGAGGAAAGGGT+TGG | + | chr6_2:74468711-74468730 | Msa0928650:CDS | 45.0% | |
| TTACAACCAACCCTTTCCTC+AGG | - | chr6_2:74468720-74468739 | None:intergenic | 45.0% | |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | + | chr6_2:74468723-74468742 | Msa0928650:CDS | 45.0% |
| CTAAGGTAACACGAATGCTC+TGG | - | chr6_2:74468831-74468850 | None:intergenic | 45.0% | |
| ! | CGTCAAAAAGAGATGGTGGT+TGG | + | chr6_2:74469014-74469033 | Msa0928650:CDS | 45.0% |
| AACACAATAACGCACTAGCC+TGG | - | chr6_2:74469856-74469875 | None:intergenic | 45.0% | |
| CAAAGCCCATGAAAAACACC+TGG | - | chr6_2:74469896-74469915 | None:intergenic | 45.0% | |
| !! | GTATGCATTGGTCTTCAGCT+TGG | + | chr6_2:74470116-74470135 | Msa0928650:CDS | 45.0% |
| AATCGAACAAGTGAGTGGTC+TGG | - | chr6_2:74470223-74470242 | None:intergenic | 45.0% | |
| GAGGGATAATCATGCTGAGT+TGG | + | chr6_2:74470276-74470295 | Msa0928650:CDS | 45.0% | |
| GTCTTCAGTGCCAACATTGA+CGG | - | chr6_2:74470830-74470849 | None:intergenic | 45.0% | |
| TGAAGCTGGAAAAAAGGCAG+AGG | + | chr6_2:74470957-74470976 | Msa0928650:CDS | 45.0% | |
| TTGAAGACTTAGATGGCGTC+GGG | - | chr6_2:74471014-74471033 | None:intergenic | 45.0% | |
| ! | CTGTTGGTGAAACATCTGCT+GGG | + | chr6_2:74471043-74471062 | Msa0928650:CDS | 45.0% |
| ! | TGTTGGTGAAACATCTGCTG+GGG | + | chr6_2:74471044-74471063 | Msa0928650:CDS | 45.0% |
| ! | TCTTTGAACTTTGGTGCGGT+GGG | - | chr6_2:74471075-74471094 | None:intergenic | 45.0% |
| ! | TTCTTTGAACTTTGGTGCGG+TGG | - | chr6_2:74471076-74471095 | None:intergenic | 45.0% |
| ! | ACCTGTGGACTGTCTGTTGT+TGG | - | chr6_2:74468669-74468688 | None:intergenic | 50.0% |
| GAAGTTATGGGTCAGGGAGT+TGG | + | chr6_2:74468933-74468952 | Msa0928650:CDS | 50.0% | |
| !! | TGGGCTTTGTTCATGGCACA+TGG | + | chr6_2:74469907-74469926 | Msa0928650:CDS | 50.0% |
| GAAGGCCTACCTCAGACTTT+AGG | + | chr6_2:74470068-74470087 | Msa0928650:CDS | 50.0% | |
| ! | AGCCACCTAAAGTCTGAGGT+AGG | - | chr6_2:74470076-74470095 | None:intergenic | 50.0% |
| GACAAGCCACCTAAAGTCTG+AGG | - | chr6_2:74470080-74470099 | None:intergenic | 50.0% | |
| ATCCCAACAGTCAGCTGATG+CGG | + | chr6_2:74470335-74470354 | Msa0928650:CDS | 50.0% | |
| ! | GCTGTTGGTGAAACATCTGC+TGG | + | chr6_2:74471042-74471061 | Msa0928650:CDS | 50.0% |
| GCCAACAACAGACAGTCCAC+AGG | + | chr6_2:74468665-74468684 | Msa0928650:CDS | 55.0% | |
| GTTATGGGTCAGGGAGTTGG+AGG | + | chr6_2:74468936-74468955 | Msa0928650:CDS | 55.0% | |
| GGCCTACCTCAGACTTTAGG+TGG | + | chr6_2:74470071-74470090 | Msa0928650:CDS | 55.0% | |
| GACCGCATCAGCTGACTGTT+GGG | - | chr6_2:74470340-74470359 | None:intergenic | 55.0% | |
| CTCGACGGTGTTCTTGAAGC+TGG | + | chr6_2:74470943-74470962 | Msa0928650:CDS | 55.0% | |
| GGACCGCATCAGCTGACTGT+TGG | - | chr6_2:74470341-74470360 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 74468309 | 74471365 | 74468309 | ID=Msa0928650;Name=Msa0928650 |
| chr6_2 | mRNA | 74468309 | 74471365 | 74468309 | ID=Msa0928650-mRNA-1;Parent=Msa0928650;Name=Msa0928650-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|1|0.5|1|1|1|2|135|818 |
| chr6_2 | exon | 74468309 | 74469239 | 74468309 | ID=Msa0928650-mRNA-1:exon:12654;Parent=Msa0928650-mRNA-1 |
| chr6_2 | exon | 74469705 | 74471365 | 74469705 | ID=Msa0928650-mRNA-1:exon:12655;Parent=Msa0928650-mRNA-1 |
| chr6_2 | CDS | 74468309 | 74469239 | 74468309 | ID=Msa0928650-mRNA-1:cds;Parent=Msa0928650-mRNA-1 |
| chr6_2 | CDS | 74469705 | 74471230 | 74469705 | ID=Msa0928650-mRNA-1:cds;Parent=Msa0928650-mRNA-1 |
| chr6_2 | three_prime_UTR | 74471231 | 74471365 | 74471231 | ID=Msa0928650-mRNA-1:three_prime_utr;Parent=Msa0928650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
