AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0929050


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0929050 MtrunA17_Chr6g0473731 67.381 420 66 7 54 408 6 419 0.0 518
Msa0929050 MtrunA17_Chr7g0223971 52.294 218 66 3 60 241 1 216 1.11e-62 210
Msa0929050 MtrunA17_Chr3g0123131 32.955 264 130 4 6 222 15 278 2.67e-33 131
Msa0929050 MtrunA17_Chr4g0067981 31.900 279 131 6 6 235 33 301 5.30e-33 131
Msa0929050 MtrunA17_Chr2g0294911 32.669 251 124 5 6 217 31 275 9.44e-33 130
Msa0929050 MtrunA17_Chr1g0161431 30.627 271 136 5 6 225 13 282 6.18e-31 125
Msa0929050 MtrunA17_Chr8g0376881 31.970 269 124 5 6 222 27 288 6.48e-31 124
Msa0929050 MtrunA17_Chr3g0137101 30.120 249 119 3 8 205 12 256 6.79e-31 125
Msa0929050 MtrunA17_Chr1g0149841 32.365 241 120 3 8 205 9 249 7.16e-31 124
Msa0929050 MtrunA17_Chr7g0275891 30.797 276 128 7 8 225 9 279 5.22e-28 113
Msa0929050 MtrunA17_Chr4g0074411 30.932 236 123 3 8 203 22 257 8.32e-27 112
Msa0929050 MtrunA17_Chr2g0304841 31.873 251 113 5 8 203 22 269 1.15e-26 112
Msa0929050 MtrunA17_Chr7g0275401 30.453 243 125 4 5 203 6 248 2.69e-26 107
Msa0929050 MtrunA17_Chr4g0074401 30.126 239 124 3 8 203 21 259 1.17e-25 109
Msa0929050 MtrunA17_Chr4g0009851 31.148 244 131 7 8 224 15 248 7.28e-25 103
Msa0929050 MtrunA17_Chr1g0149851 31.102 254 117 5 8 203 9 262 1.67e-24 105
Msa0929050 MtrunA17_Chr4g0009981 34.706 170 99 3 57 224 36 195 1.96e-24 101
Msa0929050 MtrunA17_Chr6g0471041 30.837 227 118 4 10 209 20 234 2.25e-24 104
Msa0929050 MtrunA17_Chr1g0149831 36.145 166 86 4 57 205 21 183 4.94e-23 97.1
Msa0929050 MtrunA17_Chr4g0074421 35.714 154 81 3 58 196 32 182 3.20e-22 93.6
Msa0929050 MtrunA17_Chr3g0134461 28.241 216 93 2 8 196 12 192 9.51e-22 92.4
Msa0929050 MtrunA17_Chr4g0009901 29.464 224 121 6 6 203 12 224 1.64e-21 93.6
Msa0929050 MtrunA17_Chr3g0134481 26.977 215 86 2 8 196 12 181 5.25e-18 81.6
Msa0929050 MtrunA17_Chr4g0031961 49.412 85 34 2 144 225 128 206 8.18e-18 83.6
Msa0929050 MtrunA17_Chr7g0255711 54.839 62 28 0 145 206 89 150 4.25e-17 81.3
Msa0929050 MtrunA17_Chr4g0009991 33.858 127 69 3 72 196 3 116 4.49e-14 68.6
Msa0929050 MtrunA17_Chr5g0400241 46.667 60 32 0 146 205 310 369 9.42e-12 66.6
Msa0929050 MtrunA17_Chr8g0391911 26.971 241 117 8 6 196 11 242 1.85e-11 64.3
Msa0929050 MtrunA17_Chr4g0040481 50.000 54 27 0 146 199 157 210 2.35e-11 65.1
Msa0929050 MtrunA17_Chr7g0223991 34.184 196 75 8 214 358 24 216 3.63e-11 62.8
Msa0929050 MtrunA17_Chr2g0324891 43.836 73 40 1 146 217 160 232 5.63e-11 63.9
Msa0929050 MtrunA17_Chr1g0198601 43.243 74 41 1 146 218 210 283 6.02e-11 63.9
Msa0929050 MtrunA17_Chr4g0054981 44.444 63 35 0 146 208 309 371 6.20e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0929050 AT3G16857.1 29.730 296 134 6 6 233 35 324 1.46e-32 130
Msa0929050 AT3G16857.2 29.730 296 134 6 6 233 35 324 1.96e-32 130
Msa0929050 AT2G01760.1 32.258 248 118 4 6 203 9 256 3.52e-29 117
Msa0929050 AT4G31920.1 31.727 249 130 4 8 223 17 258 1.02e-28 118
Msa0929050 AT3G16857.3 31.507 219 102 5 57 233 42 254 2.00e-28 118
Msa0929050 AT5G07210.2 32.281 285 122 6 8 223 16 298 2.50e-28 117
Msa0929050 AT2G25180.1 34.034 238 116 4 8 205 17 253 3.74e-28 117
Msa0929050 AT5G58080.1 30.350 257 137 5 8 225 18 271 4.22e-27 114
Msa0929050 AT5G07210.1 31.399 293 122 7 8 223 16 306 7.63e-26 110
Msa0929050 AT2G01760.3 35.882 170 86 3 57 203 22 191 2.18e-24 103
Msa0929050 AT2G27070.1 36.842 209 88 6 57 223 95 301 4.96e-24 104
Msa0929050 AT5G49240.1 31.602 231 116 4 8 196 42 272 8.72e-24 100
Msa0929050 AT2G01760.2 28.986 276 118 5 6 203 9 284 1.09e-23 102
Msa0929050 AT1G67710.1 31.395 258 125 6 7 214 10 265 2.06e-22 99.8
Msa0929050 AT1G67710.2 34.615 182 93 5 57 214 21 200 9.89e-19 88.6
Msa0929050 AT3G46640.2 46.512 86 42 1 144 229 141 222 3.90e-18 85.1
Msa0929050 AT3G46640.1 46.512 86 42 1 144 229 141 222 3.90e-18 85.1
Msa0929050 AT3G10760.1 43.158 95 46 1 120 206 70 164 4.35e-18 85.1
Msa0929050 AT3G46640.3 46.512 86 42 1 144 229 141 222 4.42e-18 85.1
Msa0929050 AT5G59570.2 38.532 109 59 2 106 206 92 200 5.28e-18 84.3
Msa0929050 AT5G59570.1 38.532 109 59 2 106 206 92 200 5.28e-18 84.3
Msa0929050 AT1G67710.3 33.516 182 95 5 57 214 12 191 6.23e-18 85.9
Msa0929050 AT2G40970.1 45.122 82 45 0 145 226 103 184 6.29e-17 80.5
Msa0929050 AT5G05090.1 55.000 60 27 0 144 203 78 137 7.04e-17 80.5
Msa0929050 AT3G62670.1 26.293 232 125 6 9 199 42 268 8.54e-17 82.4
Msa0929050 AT5G44190.2 47.143 70 37 0 144 213 144 213 9.42e-14 72.4
Msa0929050 AT5G44190.1 47.143 70 37 0 144 213 144 213 1.07e-13 72.8
Msa0929050 AT3G04030.2 44.615 65 32 1 140 200 34 98 1.95e-12 68.9
Msa0929050 AT5G18240.2 45.455 66 31 2 140 200 34 99 1.20e-11 66.2
Msa0929050 AT5G18240.3 45.455 66 31 2 140 200 34 99 1.20e-11 66.2
Msa0929050 AT5G18240.5 45.455 66 31 2 140 200 34 99 1.35e-11 66.2
Msa0929050 AT5G18240.1 45.455 66 31 2 140 200 34 99 1.38e-11 66.2
Msa0929050 AT5G18240.4 45.455 66 31 2 140 200 34 99 1.38e-11 66.2
Msa0929050 AT2G20570.1 45.455 66 36 0 146 211 152 217 7.88e-11 63.9

Find 69 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATATAGCTTTGGGTTTAA+TGG 0.190557 6_2:+76047984 Msa0929050:CDS
TCGTTCAATCATTTCAATTA+TGG 0.195385 6_2:+76047867 Msa0929050:CDS
TTAACAAGGAACTTAAAATT+TGG 0.202387 6_2:+76047804 Msa0929050:CDS
ATTTCATTGATGACAGAAAT+TGG 0.248135 6_2:-76047573 None:intergenic
CAGATCCAACATGCAAGTTT+TGG 0.289471 6_2:+76044141 Msa0929050:CDS
AAATGTATCCAGTCATTTAC+AGG 0.301898 6_2:+76046939 Msa0929050:CDS
GTAGAAGCGACATCATAAAA+TGG 0.305371 6_2:-76047717 None:intergenic
CCATTAAACCCAAAGCTATA+TGG 0.320064 6_2:-76047984 None:intergenic
TTAAGAAACCAAGGCTTGTT+TGG 0.322427 6_2:+76046614 Msa0929050:CDS
GACCAAGATCAAGGGGAGTT+TGG 0.325620 6_2:+76046586 Msa0929050:CDS
CTGAAGTCTTCAGCACAAAA+TGG 0.336425 6_2:-76046418 None:intergenic
ATGTTATTCCATATAGCTTT+GGG 0.337073 6_2:+76047976 Msa0929050:CDS
TCAATTATGGTGTGAAGAAC+TGG 0.359272 6_2:+76047880 Msa0929050:CDS
AATGTTATTCCATATAGCTT+TGG 0.374067 6_2:+76047975 Msa0929050:CDS
GTAAATGTTTCTGAGAATAG+AGG 0.388331 6_2:+76048008 Msa0929050:CDS
GGACCATGATGACGAGTCTT+TGG 0.388380 6_2:+76044168 Msa0929050:CDS
GAATGCTACTTCCGTCAATA+AGG 0.388592 6_2:+76048064 Msa0929050:CDS
CTGAAGACTTCAGAGACATT+TGG 0.388892 6_2:+76046428 Msa0929050:CDS
GGAACAGGAACTACGAATAA+AGG 0.399758 6_2:+76047942 Msa0929050:CDS
CTCCAAACTCCCCTTGATCT+TGG 0.403396 6_2:-76046588 None:intergenic
CAAAGCATGGTGAGCATCCT+TGG 0.404636 6_2:-76045729 None:intergenic
TTGTATGCTATTAGACAGAT+TGG 0.429839 6_2:+76046661 Msa0929050:CDS
CAAGGATGCTCACCATGCTT+TGG 0.455806 6_2:+76045730 Msa0929050:CDS
TGTTGTGCCAAAGAAAATCT+TGG 0.455958 6_2:+76046885 Msa0929050:CDS
TCTACCAGCTATCCGTCATA+TGG 0.457430 6_2:+76047735 Msa0929050:CDS
TATAGCAAGTGAAGAAGAAG+AGG 0.457530 6_2:+76046501 Msa0929050:intron
AAGTTCCTTGTTAAGAAACT+TGG 0.468839 6_2:-76047795 None:intergenic
CCGTCATATGGAGTTAGAAA+AGG 0.479711 6_2:+76047747 Msa0929050:CDS
AGATCAACAGAAGTGGGAAC+AGG 0.481464 6_2:+76047927 Msa0929050:CDS
TACCGACATCATAGTATAGT+TGG 0.481804 6_2:+76047837 Msa0929050:CDS
TGACGAGTCTTTGGCATCAC+TGG 0.484509 6_2:+76044177 Msa0929050:CDS
GTTGAAATCAGCCTTATTGA+CGG 0.487701 6_2:-76048075 None:intergenic
TGTGATGATGACCAAGATCA+AGG 0.491694 6_2:+76046577 Msa0929050:CDS
TTATTAGTCCAAACAAGCCT+TGG 0.494508 6_2:-76046622 None:intergenic
CTGAAAGATGTACAAGAGAA+AGG 0.494563 6_2:+76047495 Msa0929050:CDS
AATGACATGGAGATTATGTC+TGG 0.501152 6_2:-76046364 None:intergenic
TAGAAGCGACATCATAAAAT+GGG 0.505067 6_2:-76047716 None:intergenic
GCTATTAGACAGATTGGAAT+GGG 0.512204 6_2:+76046667 Msa0929050:CDS
GTACAAGAGAAAGGAATGGA+AGG 0.530188 6_2:+76047504 Msa0929050:CDS
TTTAAGTTCAAAATTTGCAT+CGG 0.531556 6_2:+76047545 Msa0929050:CDS
AGATGTACAAGAGAAAGGAA+TGG 0.533550 6_2:+76047500 Msa0929050:CDS
TGAATGTTCCAAACCTAACA+AGG 0.533568 6_2:+76046914 Msa0929050:CDS
AGACATTTGGAAGTATGCAC+TGG 0.537346 6_2:+76046441 Msa0929050:CDS
AACTCCATATGACGGATAGC+TGG 0.539302 6_2:-76047739 None:intergenic
TGGAGTTAGAAAAGGAATGA+TGG 0.547753 6_2:+76047755 Msa0929050:CDS
TGCTATTAGACAGATTGGAA+TGG 0.548483 6_2:+76046666 Msa0929050:CDS
ATGCCAAAGACTCGTCATCA+TGG 0.549394 6_2:-76044171 None:intergenic
TAAATGTTTCTGAGAATAGA+GGG 0.551447 6_2:+76048009 Msa0929050:CDS
GTGATGATGACCAAGATCAA+GGG 0.559984 6_2:+76046578 Msa0929050:CDS
ATCACTGGCTAATATACTCA+TGG 0.566664 6_2:+76044192 Msa0929050:CDS
CAAGAATAGATCAACAGAAG+TGG 0.568819 6_2:+76047920 Msa0929050:CDS
TGTCGCCAAGTTTCTTAACA+AGG 0.569859 6_2:+76047790 Msa0929050:CDS
CAAGAGAAAGGAATGGAAGG+AGG 0.573386 6_2:+76047507 Msa0929050:CDS
AAGAATAGATCAACAGAAGT+GGG 0.573718 6_2:+76047921 Msa0929050:CDS
CACAACCAAAACTTGCATGT+TGG 0.574671 6_2:-76044146 None:intergenic
GATTCATCTGCATAAATCAA+AGG 0.587541 6_2:+76048031 Msa0929050:CDS
TTGGAGTTGTTAAGAAACCA+AGG 0.591730 6_2:+76046605 Msa0929050:CDS
CTCGAAGAGTGACCAAAGCA+TGG 0.605583 6_2:-76045742 None:intergenic
TGCTCCATGTTCTAATGACA+TGG 0.612114 6_2:-76046377 None:intergenic
GGTGTGAAGAACTGGAGCGT+TGG 0.621741 6_2:+76047888 Msa0929050:CDS
TTCCAACTATACTATGATGT+CGG 0.631257 6_2:-76047839 None:intergenic
ATCTCCATGTCATTAGAACA+TGG 0.631773 6_2:+76046373 Msa0929050:CDS
TGATGATGACCAAGATCAAG+GGG 0.634597 6_2:+76046579 Msa0929050:CDS
TGGCTAATATACTCATGGCA+TGG 0.635039 6_2:+76044197 Msa0929050:CDS
GAATGTTCCAAACCTAACAA+GGG 0.643998 6_2:+76046915 Msa0929050:CDS
TAAGGCTGATTTCAACAATG+AGG 0.645850 6_2:+76048082 Msa0929050:CDS
CAGGAACTACGAATAAAGGA+AGG 0.649263 6_2:+76047946 Msa0929050:CDS
ATTAGACAGATTGGAATGGG+AGG 0.653232 6_2:+76046670 Msa0929050:CDS
CTCATGGCATGGCAATACAA+AGG 0.657436 6_2:+76044208 Msa0929050:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTAACAAAACATTTTA+GGG - chr6_2:76045315-76045334 None:intergenic 10.0%
!!! TATATTTAACAAAACATTTT+AGG - chr6_2:76045316-76045335 None:intergenic 10.0%
!! AAAACCAAATAAAAAAAATT+AGG - chr6_2:76045691-76045710 None:intergenic 10.0%
!! ATAAAAATAAAATAATTGCA+AGG - chr6_2:76046212-76046231 None:intergenic 10.0%
!!! AATAAATAGTTTATTTTTCT+TGG - chr6_2:76046470-76046489 None:intergenic 10.0%
!!! TATATAAAATGGAAAATTTT+AGG - chr6_2:76047159-76047178 None:intergenic 10.0%
!!! ACATATATTCTAAAAATATT+TGG - chr6_2:76047415-76047434 None:intergenic 10.0%
!! TTATATTTAATTAAGTAGTC+TGG - chr6_2:76045156-76045175 None:intergenic 15.0%
!! AAAACAAAGTTTAATATCAT+TGG + chr6_2:76045337-76045356 Msa0929050:intron 15.0%
!!! ATTATGAATAAACTTTTAAC+CGG + chr6_2:76045426-76045445 Msa0929050:intron 15.0%
!!! TTTTAACTTAAATTACTGAA+TGG - chr6_2:76045612-76045631 None:intergenic 15.0%
!!! ATGACCTAATTTTTTTTATT+TGG + chr6_2:76045684-76045703 Msa0929050:intron 15.0%
!! TGGATGAAATTTAATAAATA+AGG + chr6_2:76046048-76046067 Msa0929050:intron 15.0%
!! GGATGAAATTTAATAAATAA+GGG + chr6_2:76046049-76046068 Msa0929050:intron 15.0%
!!! AATAAATAAGGGTATAATAA+TGG + chr6_2:76046060-76046079 Msa0929050:intron 15.0%
!!! ATTAGTCTTCATAAAAAAAA+AGG - chr6_2:76047040-76047059 None:intergenic 15.0%
!!! ACTGTTTTAAATAATAAATG+AGG - chr6_2:76047244-76047263 None:intergenic 15.0%
!! AAAAATGAAAAAATTAGAGT+AGG - chr6_2:76047389-76047408 None:intergenic 15.0%
!! AAAGTAATTCAATTATCTGA+TGG - chr6_2:76044256-76044275 None:intergenic 20.0%
!! ATTAAAATACCACAATTGAA+AGG - chr6_2:76044467-76044486 None:intergenic 20.0%
!!! TACAAATACTTTGTTTGTAA+AGG + chr6_2:76044671-76044690 Msa0929050:intron 20.0%
!!! AATCATTCTTTGTTTTTGAA+GGG - chr6_2:76044708-76044727 None:intergenic 20.0%
!!! AAATCATTCTTTGTTTTTGA+AGG - chr6_2:76044709-76044728 None:intergenic 20.0%
!! TTATATGTATGAGTGAAAAT+GGG + chr6_2:76044999-76045018 Msa0929050:intron 20.0%
!!! TGGTATGTTAGTTTTTTTTT+AGG + chr6_2:76045357-76045376 Msa0929050:intron 20.0%
!!! GGTATGTTAGTTTTTTTTTA+GGG + chr6_2:76045358-76045377 Msa0929050:intron 20.0%
!!! GTATGTTAGTTTTTTTTTAG+GGG + chr6_2:76045359-76045378 Msa0929050:intron 20.0%
!! TTATATATTTCTTCCTTATC+AGG - chr6_2:76045533-76045552 None:intergenic 20.0%
!! GAAGAAATATATAACTCTTA+TGG + chr6_2:76045539-76045558 Msa0929050:intron 20.0%
!!! TTTCATATATTTGGAATGAA+TGG + chr6_2:76045800-76045819 Msa0929050:intron 20.0%
!! AAATGATATTTACCTATAAC+AGG - chr6_2:76045866-76045885 None:intergenic 20.0%
!!! ATTAATTGTGTTGATTTCAA+TGG + chr6_2:76045965-76045984 Msa0929050:intron 20.0%
!! CAAAATAATAAATGTTGCAT+TGG + chr6_2:76046086-76046105 Msa0929050:intron 20.0%
!!! TTAGTTAGCTTTCTATATAA+TGG - chr6_2:76046825-76046844 None:intergenic 20.0%
!!! AGACTAATGAAATTTTTTGA+AGG + chr6_2:76047052-76047071 Msa0929050:intron 20.0%
!! AGATATTCTAAATATTGTTG+AGG + chr6_2:76047076-76047095 Msa0929050:intron 20.0%
!! GTTATGGTGTATATATAAAA+TGG - chr6_2:76047170-76047189 None:intergenic 20.0%
!!! TTTAAGTTCAAAATTTGCAT+CGG + chr6_2:76047545-76047564 Msa0929050:CDS 20.0%
!! TTAACAAGGAACTTAAAATT+TGG + chr6_2:76047804-76047823 Msa0929050:CDS 20.0%
! AAACAGTAGAATACATTGTT+TGG - chr6_2:76044352-76044371 None:intergenic 25.0%
! ATTAATTATCAGAAGCCAAA+GGG - chr6_2:76044503-76044522 None:intergenic 25.0%
! AACCAATCCTTAAAATAAAG+GGG - chr6_2:76044743-76044762 None:intergenic 25.0%
! GAACCAATCCTTAAAATAAA+GGG - chr6_2:76044744-76044763 None:intergenic 25.0%
! TGAACCAATCCTTAAAATAA+AGG - chr6_2:76044745-76044764 None:intergenic 25.0%
! CTTATATGTATGAGTGAAAA+TGG + chr6_2:76044998-76045017 Msa0929050:intron 25.0%
!! TTTTCCATTTTAAACTGAGA+AGG + chr6_2:76045082-76045101 Msa0929050:intron 25.0%
! TGAATCAAATTAACCTGATA+AGG + chr6_2:76045517-76045536 Msa0929050:intron 25.0%
! AATATTAATGCACACTCAAT+AGG + chr6_2:76045575-76045594 Msa0929050:intron 25.0%
! ATCAGTGAGTTTCATATATT+TGG + chr6_2:76045791-76045810 Msa0929050:intron 25.0%
!!! AGAGTATTTTTTAGTTGGAA+GGG - chr6_2:76045891-76045910 None:intergenic 25.0%
!!! TAGAGAGAGTATTTTTTAGT+TGG - chr6_2:76045896-76045915 None:intergenic 25.0%
! CTCTAAATTATAGTCGTTTA+AGG + chr6_2:76045917-76045936 Msa0929050:intron 25.0%
! CCACTAACTACAATTAATAA+GGG - chr6_2:76046017-76046036 None:intergenic 25.0%
! TCCACTAACTACAATTAATA+AGG - chr6_2:76046018-76046037 None:intergenic 25.0%
!! CATCACTATTTGAAACAAAA+AGG - chr6_2:76046329-76046348 None:intergenic 25.0%
! ATCTGAAAGAGAGAAAAAAA+AGG - chr6_2:76046866-76046885 None:intergenic 25.0%
!! ATTATCTCCAAGATTTTCTT+TGG - chr6_2:76046895-76046914 None:intergenic 25.0%
! AAAAAAAACCTGTAAATGAC+TGG - chr6_2:76046950-76046969 None:intergenic 25.0%
! TACAAAAATAAACGGATAAC+AGG - chr6_2:76047192-76047211 None:intergenic 25.0%
! GTATGCAAAGAATATTATGT+TGG + chr6_2:76047264-76047283 Msa0929050:intron 25.0%
!! ATGAAATTGGTAACTGAATT+TGG - chr6_2:76047361-76047380 None:intergenic 25.0%
! AGAGTAGGAAAAAATGAAAT+TGG - chr6_2:76047374-76047393 None:intergenic 25.0%
!! ATTTCATTGATGACAGAAAT+TGG - chr6_2:76047576-76047595 None:intergenic 25.0%
! TCGTTCAATCATTTCAATTA+TGG + chr6_2:76047867-76047886 Msa0929050:CDS 25.0%
! AATGTTATTCCATATAGCTT+TGG + chr6_2:76047975-76047994 Msa0929050:CDS 25.0%
! ATGTTATTCCATATAGCTTT+GGG + chr6_2:76047976-76047995 Msa0929050:CDS 25.0%
!! TAAATGTTTCTGAGAATAGA+GGG + chr6_2:76048009-76048028 Msa0929050:CDS 25.0%
CTGATGGTTAAATAGAAAAG+AGG - chr6_2:76044240-76044259 None:intergenic 30.0%
! AAAGTTTTGCCTTTCAATTG+TGG + chr6_2:76044455-76044474 Msa0929050:intron 30.0%
ATTGTTAGATATCAACCCTT+TGG + chr6_2:76044485-76044504 Msa0929050:intron 30.0%
GATTAATTATCAGAAGCCAA+AGG - chr6_2:76044504-76044523 None:intergenic 30.0%
! ATCTTGGCTAAAGCAAATTT+TGG - chr6_2:76044563-76044582 None:intergenic 30.0%
! AATTTGCTTTAGCCAAGATT+TGG + chr6_2:76044564-76044583 Msa0929050:intron 30.0%
ACCAATCCTTAAAATAAAGG+GGG - chr6_2:76044742-76044761 None:intergenic 30.0%
AGACAATCAAAAGGGAAAAA+AGG - chr6_2:76044965-76044984 None:intergenic 30.0%
!! AAGTGTTGAGACAATCAAAA+GGG - chr6_2:76044973-76044992 None:intergenic 30.0%
!! AAAGTGTTGAGACAATCAAA+AGG - chr6_2:76044974-76044993 None:intergenic 30.0%
! TTAGCCTTCTCAGTTTAAAA+TGG - chr6_2:76045089-76045108 None:intergenic 30.0%
! TAATTAAGTAGTCTGGTTTG+TGG - chr6_2:76045149-76045168 None:intergenic 30.0%
!!! TGTTAGTTTTTTTTTAGGGG+AGG + chr6_2:76045362-76045381 Msa0929050:intron 30.0%
!!! GTTAGTTTTTTTTTAGGGGA+GGG + chr6_2:76045363-76045382 Msa0929050:intron 30.0%
!!! TTAGTTTTTTTTTAGGGGAG+GGG + chr6_2:76045364-76045383 Msa0929050:intron 30.0%
! AGAATAAGTTGAGCAAAGTT+AGG - chr6_2:76045474-76045493 None:intergenic 30.0%
! TATTCTCAAACAGGAGTTTT+AGG + chr6_2:76045488-76045507 Msa0929050:intron 30.0%
!! ACTCATCTTGAATTTGCTTT+TGG - chr6_2:76045835-76045854 None:intergenic 30.0%
!!! GAGTATTTTTTAGTTGGAAG+GGG - chr6_2:76045890-76045909 None:intergenic 30.0%
!!! GAGAGTATTTTTTAGTTGGA+AGG - chr6_2:76045892-76045911 None:intergenic 30.0%
CCCTTATTAATTGTAGTTAG+TGG + chr6_2:76046014-76046033 Msa0929050:intron 30.0%
TTGTATGCTATTAGACAGAT+TGG + chr6_2:76046661-76046680 Msa0929050:CDS 30.0%
AAATGTATCCAGTCATTTAC+AGG + chr6_2:76046939-76046958 Msa0929050:CDS 30.0%
AATAAACGGATAACAGGTTA+TGG - chr6_2:76047186-76047205 None:intergenic 30.0%
! TTTTCGCTTGAAAAAGTGAA+AGG - chr6_2:76047632-76047651 None:intergenic 30.0%
TAGAAGCGACATCATAAAAT+GGG - chr6_2:76047719-76047738 None:intergenic 30.0%
AAGTTCCTTGTTAAGAAACT+TGG - chr6_2:76047798-76047817 None:intergenic 30.0%
TTCCAACTATACTATGATGT+CGG - chr6_2:76047842-76047861 None:intergenic 30.0%
AAGAATAGATCAACAGAAGT+GGG + chr6_2:76047921-76047940 Msa0929050:CDS 30.0%
! GTAAATGTTTCTGAGAATAG+AGG + chr6_2:76048008-76048027 Msa0929050:CDS 30.0%
GATTCATCTGCATAAATCAA+AGG + chr6_2:76048031-76048050 Msa0929050:CDS 30.0%
! ATCACTGGCTAATATACTCA+TGG + chr6_2:76044192-76044211 Msa0929050:CDS 35.0%
AGATTTGCAATGCATACACA+AGG - chr6_2:76044385-76044404 None:intergenic 35.0%
AGACACTAGATTCCAAATCT+TGG - chr6_2:76044579-76044598 None:intergenic 35.0%
!!! TCCCCCTTTATTTTAAGGAT+TGG + chr6_2:76044738-76044757 Msa0929050:intron 35.0%
!!! ATTTTAAGGATTGGTTCACG+TGG + chr6_2:76044747-76044766 Msa0929050:intron 35.0%
CTACATTGTAGGATTCTCAA+GGG - chr6_2:76045033-76045052 None:intergenic 35.0%
!!! TAGTTTTTTTTTAGGGGAGG+GGG + chr6_2:76045365-76045384 Msa0929050:intron 35.0%
! CTTTTAACCGGACTATACTT+AGG + chr6_2:76045438-76045457 Msa0929050:intron 35.0%
TGCTCAACTTATTCTCAAAC+AGG + chr6_2:76045479-76045498 Msa0929050:intron 35.0%
GAGTTTCAACTACCTGTTAT+AGG + chr6_2:76045851-76045870 Msa0929050:intron 35.0%
AGTTAGTGGAGTAGTTAAGT+TGG + chr6_2:76046028-76046047 Msa0929050:intron 35.0%
AGACAATTATTGTGAGACGT+AGG + chr6_2:76046155-76046174 Msa0929050:intron 35.0%
GACAATTATTGTGAGACGTA+GGG + chr6_2:76046156-76046175 Msa0929050:intron 35.0%
AATGACATGGAGATTATGTC+TGG - chr6_2:76046367-76046386 None:intergenic 35.0%
ATCTCCATGTCATTAGAACA+TGG + chr6_2:76046373-76046392 Msa0929050:CDS 35.0%
TATAGCAAGTGAAGAAGAAG+AGG + chr6_2:76046501-76046520 Msa0929050:intron 35.0%
TTGGAGTTGTTAAGAAACCA+AGG + chr6_2:76046605-76046624 Msa0929050:CDS 35.0%
! TTAAGAAACCAAGGCTTGTT+TGG + chr6_2:76046614-76046633 Msa0929050:CDS 35.0%
TTATTAGTCCAAACAAGCCT+TGG - chr6_2:76046625-76046644 None:intergenic 35.0%
TGCTATTAGACAGATTGGAA+TGG + chr6_2:76046666-76046685 Msa0929050:CDS 35.0%
GCTATTAGACAGATTGGAAT+GGG + chr6_2:76046667-76046686 Msa0929050:CDS 35.0%
TGTTGTGCCAAAGAAAATCT+TGG + chr6_2:76046885-76046904 Msa0929050:CDS 35.0%
TGAATGTTCCAAACCTAACA+AGG + chr6_2:76046914-76046933 Msa0929050:CDS 35.0%
GAATGTTCCAAACCTAACAA+GGG + chr6_2:76046915-76046934 Msa0929050:CDS 35.0%
! ACATTTTCCCTTGTTAGGTT+TGG - chr6_2:76046925-76046944 None:intergenic 35.0%
! TGGATACATTTTCCCTTGTT+AGG - chr6_2:76046930-76046949 None:intergenic 35.0%
!! GAATATTATGTTGGTTCGAG+TGG + chr6_2:76047273-76047292 Msa0929050:intron 35.0%
CTGAAAGATGTACAAGAGAA+AGG + chr6_2:76047495-76047514 Msa0929050:CDS 35.0%
AGATGTACAAGAGAAAGGAA+TGG + chr6_2:76047500-76047519 Msa0929050:CDS 35.0%
GCGAAAAACTCTTTCAATGA+TGG + chr6_2:76047645-76047664 Msa0929050:CDS 35.0%
! TTTTCGCTTGAAAAGGTGAA+AGG - chr6_2:76047695-76047714 None:intergenic 35.0%
!! AATGGGTTTTTCGCTTGAAA+AGG - chr6_2:76047702-76047721 None:intergenic 35.0%
GTAGAAGCGACATCATAAAA+TGG - chr6_2:76047720-76047739 None:intergenic 35.0%
! CCTTTTCTAACTCCATATGA+CGG - chr6_2:76047750-76047769 None:intergenic 35.0%
TGGAGTTAGAAAAGGAATGA+TGG + chr6_2:76047755-76047774 Msa0929050:CDS 35.0%
TACCGACATCATAGTATAGT+TGG + chr6_2:76047837-76047856 Msa0929050:CDS 35.0%
TCAATTATGGTGTGAAGAAC+TGG + chr6_2:76047880-76047899 Msa0929050:CDS 35.0%
CAAGAATAGATCAACAGAAG+TGG + chr6_2:76047920-76047939 Msa0929050:CDS 35.0%
CCATTAAACCCAAAGCTATA+TGG - chr6_2:76047987-76048006 None:intergenic 35.0%
!! CCATATAGCTTTGGGTTTAA+TGG + chr6_2:76047984-76048003 Msa0929050:CDS 35.0%
!! GTTGAAATCAGCCTTATTGA+CGG - chr6_2:76048078-76048097 None:intergenic 35.0%
! TAAGGCTGATTTCAACAATG+AGG + chr6_2:76048082-76048101 Msa0929050:CDS 35.0%
! CAGATCCAACATGCAAGTTT+TGG + chr6_2:76044141-76044160 Msa0929050:CDS 40.0%
CACAACCAAAACTTGCATGT+TGG - chr6_2:76044149-76044168 None:intergenic 40.0%
!!! CAACATGCAAGTTTTGGTTG+TGG + chr6_2:76044147-76044166 Msa0929050:CDS 40.0%
TGGCTAATATACTCATGGCA+TGG + chr6_2:76044197-76044216 Msa0929050:CDS 40.0%
TAATCCAGAATCTAGCTGAG+AGG + chr6_2:76044519-76044538 Msa0929050:intron 40.0%
!!! TGCGATCCCCCTTTATTTTA+AGG + chr6_2:76044733-76044752 Msa0929050:intron 40.0%
TGACACAATTCAAAGACTCG+AGG - chr6_2:76044902-76044921 None:intergenic 40.0%
GCTACATTGTAGGATTCTCA+AGG - chr6_2:76045034-76045053 None:intergenic 40.0%
AGAATCCTACAATGTAGCCT+AGG + chr6_2:76045036-76045055 Msa0929050:intron 40.0%
AACTTGATCTGATCTGACCT+AGG - chr6_2:76045056-76045075 None:intergenic 40.0%
!!! AGTTTTTTTTTAGGGGAGGG+GGG + chr6_2:76045366-76045385 Msa0929050:intron 40.0%
CACAATGCCTAAGTATAGTC+CGG - chr6_2:76045448-76045467 None:intergenic 40.0%
! ATTTTCAGTTCGAACTGCCA+AGG + chr6_2:76045712-76045731 Msa0929050:intron 40.0%
TGCTCCATGTTCTAATGACA+TGG - chr6_2:76046380-76046399 None:intergenic 40.0%
CTGAAGTCTTCAGCACAAAA+TGG - chr6_2:76046421-76046440 None:intergenic 40.0%
CTGAAGACTTCAGAGACATT+TGG + chr6_2:76046428-76046447 Msa0929050:CDS 40.0%
! AGACATTTGGAAGTATGCAC+TGG + chr6_2:76046441-76046460 Msa0929050:CDS 40.0%
! TGTGATGATGACCAAGATCA+AGG + chr6_2:76046577-76046596 Msa0929050:CDS 40.0%
! GTGATGATGACCAAGATCAA+GGG + chr6_2:76046578-76046597 Msa0929050:CDS 40.0%
! TGATGATGACCAAGATCAAG+GGG + chr6_2:76046579-76046598 Msa0929050:CDS 40.0%
ATTAGACAGATTGGAATGGG+AGG + chr6_2:76046670-76046689 Msa0929050:CDS 40.0%
GTACAAGAGAAAGGAATGGA+AGG + chr6_2:76047504-76047523 Msa0929050:CDS 40.0%
CCGTCATATGGAGTTAGAAA+AGG + chr6_2:76047747-76047766 Msa0929050:CDS 40.0%
TGTCGCCAAGTTTCTTAACA+AGG + chr6_2:76047790-76047809 Msa0929050:CDS 40.0%
GGAACAGGAACTACGAATAA+AGG + chr6_2:76047942-76047961 Msa0929050:CDS 40.0%
CAGGAACTACGAATAAAGGA+AGG + chr6_2:76047946-76047965 Msa0929050:CDS 40.0%
! GAATGCTACTTCCGTCAATA+AGG + chr6_2:76048064-76048083 Msa0929050:CDS 40.0%
ATGCCAAAGACTCGTCATCA+TGG - chr6_2:76044174-76044193 None:intergenic 45.0%
CTCATGGCATGGCAATACAA+AGG + chr6_2:76044208-76044227 Msa0929050:CDS 45.0%
TCAACCTCTCAGCTAGATTC+TGG - chr6_2:76044526-76044545 None:intergenic 45.0%
!!! AGGATTGGTTCACGTGGTTT+TGG + chr6_2:76044753-76044772 Msa0929050:intron 45.0%
TCTGACCTAGGCTACATTGT+AGG - chr6_2:76045044-76045063 None:intergenic 45.0%
! TAAGTAGTCTGGTTTGTGGC+AGG - chr6_2:76045145-76045164 None:intergenic 45.0%
!!! GTTTTTTTTTAGGGGAGGGG+GGG + chr6_2:76045367-76045386 Msa0929050:intron 45.0%
CAAGAGAAAGGAATGGAAGG+AGG + chr6_2:76047507-76047526 Msa0929050:CDS 45.0%
TCTACCAGCTATCCGTCATA+TGG + chr6_2:76047735-76047754 Msa0929050:CDS 45.0%
!! AACTCCATATGACGGATAGC+TGG - chr6_2:76047742-76047761 None:intergenic 45.0%
AGATCAACAGAAGTGGGAAC+AGG + chr6_2:76047927-76047946 Msa0929050:CDS 45.0%
!!! TTTTTTTTTAAAGTTTATTT+AGG + chr6_2:76045111-76045130 Msa0929050:intron 5.0%
!!! TAAAATATTCAATATTTTAA+TGG + chr6_2:76045627-76045646 Msa0929050:intron 5.0%
!! ATATATTATACAAAAATAAA+CGG - chr6_2:76047200-76047219 None:intergenic 5.0%
! GGACCATGATGACGAGTCTT+TGG + chr6_2:76044168-76044187 Msa0929050:CDS 50.0%
TGACGAGTCTTTGGCATCAC+TGG + chr6_2:76044177-76044196 Msa0929050:CDS 50.0%
CAAAGCATGGTGAGCATCCT+TGG - chr6_2:76045732-76045751 None:intergenic 50.0%
CAAGGATGCTCACCATGCTT+TGG + chr6_2:76045730-76045749 Msa0929050:CDS 50.0%
CTCGAAGAGTGACCAAAGCA+TGG - chr6_2:76045745-76045764 None:intergenic 50.0%
GACCAAGATCAAGGGGAGTT+TGG + chr6_2:76046586-76046605 Msa0929050:CDS 50.0%
CTCCAAACTCCCCTTGATCT+TGG - chr6_2:76046591-76046610 None:intergenic 50.0%
GACAGATTGGAATGGGAGGT+AGG + chr6_2:76046674-76046693 Msa0929050:intron 50.0%
GGTGTGAAGAACTGGAGCGT+TGG + chr6_2:76047888-76047907 Msa0929050:CDS 55.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 76044130 76048151 76044130 ID=Msa0929050;Name=Msa0929050
chr6_2 mRNA 76044130 76048151 76044130 ID=Msa0929050-mRNA-1;Parent=Msa0929050;Name=Msa0929050-mRNA-1;_AED=0.12;_eAED=0.14;_QI=0|0|0|1|0.8|0.83|6|0|419
chr6_2 exon 76044130 76044229 76044130 ID=Msa0929050-mRNA-1:exon:12844;Parent=Msa0929050-mRNA-1
chr6_2 exon 76045720 76045794 76045720 ID=Msa0929050-mRNA-1:exon:12845;Parent=Msa0929050-mRNA-1
chr6_2 exon 76046344 76046493 76046344 ID=Msa0929050-mRNA-1:exon:12846;Parent=Msa0929050-mRNA-1
chr6_2 exon 76046506 76046691 76046506 ID=Msa0929050-mRNA-1:exon:12847;Parent=Msa0929050-mRNA-1
chr6_2 exon 76046884 76046960 76046884 ID=Msa0929050-mRNA-1:exon:12848;Parent=Msa0929050-mRNA-1
chr6_2 exon 76047480 76048151 76047480 ID=Msa0929050-mRNA-1:exon:12849;Parent=Msa0929050-mRNA-1
chr6_2 CDS 76044130 76044229 76044130 ID=Msa0929050-mRNA-1:cds;Parent=Msa0929050-mRNA-1
chr6_2 CDS 76045720 76045794 76045720 ID=Msa0929050-mRNA-1:cds;Parent=Msa0929050-mRNA-1
chr6_2 CDS 76046344 76046493 76046344 ID=Msa0929050-mRNA-1:cds;Parent=Msa0929050-mRNA-1
chr6_2 CDS 76046506 76046691 76046506 ID=Msa0929050-mRNA-1:cds;Parent=Msa0929050-mRNA-1
chr6_2 CDS 76046884 76046960 76046884 ID=Msa0929050-mRNA-1:cds;Parent=Msa0929050-mRNA-1
chr6_2 CDS 76047480 76048151 76047480 ID=Msa0929050-mRNA-1:cds;Parent=Msa0929050-mRNA-1
Gene Sequence

>Msa0929050

ATGAGTTACGACAGATCCAACATGCAAGTTTTGGTTGTGGACCATGATGACGAGTCTTTGGCATCACTGGCTAATATACTCATGGCATGGCAATACAAAGTTCGAACTGCCAAGGATGCTCACCATGCTTTGGTCACTCTTCGAGACTCTCAAGTCTTGTTTGATCTCATAATCATGATGTCTAAAGATAATAGACCAGACATAATCTCCATGTCATTAGAACATGGAGCAGCACAATATATTGTTAAACCATTTTGTGCTGAAGACTTCAGAGACATTTGGAAGTATGCACTGGAAGCCAAGAAAAATAAACTATTTATTGATACAAGTGAAGAAGAAGAGGAGACATCAACTGATCAATTACAAACTAAAAAGAATTGTAGTAAAAGAAAGAGTTGTGATGATGACCAAGATCAAGGGGAGTTTGGAGTTGTTAAGAAACCAAGGCTTGTTTGGACTAATAATCTTCACAGTCGATTTTTGTATGCTATTAGACAGATTGGAATGGGAGATGTTGTGCCAAAGAAAATCTTGGAGATAATGAATGTTCCAAACCTAACAAGGGAAAATGTATCCAGTCATTTACAGAAGCATCGCATGTTTCTGAAAGATGTACAAGAGAAAGGAATGGAAGGAGGAGTTTCTCAGAGAGCTTTAAGTTCAAAATTTGCATCGGATCTTCCAATTTCTGTCATCAATGAAATCATTGAAAGAAGAAAAAACAGTCGATATTCAAACCTTTCACTTTTTCAAGCGAAAAACTCTTTCAATGATGGTGCTTCTACTAGCAATTCATCAAACCTTTCACCTTTTCAAGCGAAAAACCCATTTTATGATGTCGCTTCTACCAGCTATCCGTCATATGGAGTTAGAAAAGGAATGATGGCTTCTTCTTCTTTGTCGCCAAGTTTCTTAACAAGGAACTTAAAATTTGGTGATACTAGTTACCGACATCATAGTATAGTTGGAAATGATTCGTTCAATCATTTCAATTATGGTGTGAAGAACTGGAGCGTTGGATCTACAATCAAGAATAGATCAACAGAAGTGGGAACAGGAACTACGAATAAAGGAAGGTTTGATAATGTTATTCCATATAGCTTTGGGTTTAATGGAGTAAATGTTTCTGAGAATAGAGGGATTCATCTGCATAAATCAAAGGCTGCTGTTGAGAATGCTACTTCCGTCAATAAGGCTGATTTCAACAATGAGGTATGCAAACATGAATCTTTTAAAACAATCCACAATAATTTTCTATAA

Protein sequence

>Msa0929050

MSYDRSNMQVLVVDHDDESLASLANILMAWQYKVRTAKDAHHALVTLRDSQVLFDLIIMMSKDNRPDIISMSLEHGAAQYIVKPFCAEDFRDIWKYALEAKKNKLFIDTSEEEEETSTDQLQTKKNCSKRKSCDDDQDQGEFGVVKKPRLVWTNNLHSRFLYAIRQIGMGDVVPKKILEIMNVPNLTRENVSSHLQKHRMFLKDVQEKGMEGGVSQRALSSKFASDLPISVINEIIERRKNSRYSNLSLFQAKNSFNDGASTSNSSNLSPFQAKNPFYDVASTSYPSYGVRKGMMASSSLSPSFLTRNLKFGDTSYRHHSIVGNDSFNHFNYGVKNWSVGSTIKNRSTEVGTGTTNKGRFDNVIPYSFGFNGVNVSENRGIHLHKSKAAVENATSVNKADFNNEVCKHESFKTIHNNFL*