AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0929110


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0929110 MtrunA17_Chr6g0473731 67.381 420 66 7 54 408 6 419 0.0 518
Msa0929110 MtrunA17_Chr7g0223971 52.294 218 66 3 60 241 1 216 1.11e-62 210
Msa0929110 MtrunA17_Chr3g0123131 32.955 264 130 4 6 222 15 278 2.67e-33 131
Msa0929110 MtrunA17_Chr4g0067981 31.900 279 131 6 6 235 33 301 5.30e-33 131
Msa0929110 MtrunA17_Chr2g0294911 32.669 251 124 5 6 217 31 275 9.44e-33 130
Msa0929110 MtrunA17_Chr1g0161431 30.627 271 136 5 6 225 13 282 6.18e-31 125
Msa0929110 MtrunA17_Chr8g0376881 31.970 269 124 5 6 222 27 288 6.48e-31 124
Msa0929110 MtrunA17_Chr3g0137101 30.120 249 119 3 8 205 12 256 6.79e-31 125
Msa0929110 MtrunA17_Chr1g0149841 32.365 241 120 3 8 205 9 249 7.16e-31 124
Msa0929110 MtrunA17_Chr7g0275891 30.797 276 128 7 8 225 9 279 5.22e-28 113
Msa0929110 MtrunA17_Chr4g0074411 30.932 236 123 3 8 203 22 257 8.32e-27 112
Msa0929110 MtrunA17_Chr2g0304841 31.873 251 113 5 8 203 22 269 1.15e-26 112
Msa0929110 MtrunA17_Chr7g0275401 30.453 243 125 4 5 203 6 248 2.69e-26 107
Msa0929110 MtrunA17_Chr4g0074401 30.126 239 124 3 8 203 21 259 1.17e-25 109
Msa0929110 MtrunA17_Chr4g0009851 31.148 244 131 7 8 224 15 248 7.28e-25 103
Msa0929110 MtrunA17_Chr1g0149851 31.102 254 117 5 8 203 9 262 1.67e-24 105
Msa0929110 MtrunA17_Chr4g0009981 34.706 170 99 3 57 224 36 195 1.96e-24 101
Msa0929110 MtrunA17_Chr6g0471041 30.837 227 118 4 10 209 20 234 2.25e-24 104
Msa0929110 MtrunA17_Chr1g0149831 36.145 166 86 4 57 205 21 183 4.94e-23 97.1
Msa0929110 MtrunA17_Chr4g0074421 35.714 154 81 3 58 196 32 182 3.20e-22 93.6
Msa0929110 MtrunA17_Chr3g0134461 28.241 216 93 2 8 196 12 192 9.51e-22 92.4
Msa0929110 MtrunA17_Chr4g0009901 29.464 224 121 6 6 203 12 224 1.64e-21 93.6
Msa0929110 MtrunA17_Chr3g0134481 26.977 215 86 2 8 196 12 181 5.25e-18 81.6
Msa0929110 MtrunA17_Chr4g0031961 49.412 85 34 2 144 225 128 206 8.18e-18 83.6
Msa0929110 MtrunA17_Chr7g0255711 54.839 62 28 0 145 206 89 150 4.25e-17 81.3
Msa0929110 MtrunA17_Chr4g0009991 33.858 127 69 3 72 196 3 116 4.49e-14 68.6
Msa0929110 MtrunA17_Chr5g0400241 46.667 60 32 0 146 205 310 369 9.42e-12 66.6
Msa0929110 MtrunA17_Chr8g0391911 26.971 241 117 8 6 196 11 242 1.85e-11 64.3
Msa0929110 MtrunA17_Chr4g0040481 50.000 54 27 0 146 199 157 210 2.35e-11 65.1
Msa0929110 MtrunA17_Chr7g0223991 34.184 196 75 8 214 358 24 216 3.63e-11 62.8
Msa0929110 MtrunA17_Chr2g0324891 43.836 73 40 1 146 217 160 232 5.63e-11 63.9
Msa0929110 MtrunA17_Chr1g0198601 43.243 74 41 1 146 218 210 283 6.02e-11 63.9
Msa0929110 MtrunA17_Chr4g0054981 44.444 63 35 0 146 208 309 371 6.20e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0929110 AT3G16857.1 29.730 296 134 6 6 233 35 324 1.46e-32 130
Msa0929110 AT3G16857.2 29.730 296 134 6 6 233 35 324 1.96e-32 130
Msa0929110 AT2G01760.1 32.258 248 118 4 6 203 9 256 3.52e-29 117
Msa0929110 AT4G31920.1 31.727 249 130 4 8 223 17 258 1.02e-28 118
Msa0929110 AT3G16857.3 31.507 219 102 5 57 233 42 254 2.00e-28 118
Msa0929110 AT5G07210.2 32.281 285 122 6 8 223 16 298 2.50e-28 117
Msa0929110 AT2G25180.1 34.034 238 116 4 8 205 17 253 3.74e-28 117
Msa0929110 AT5G58080.1 30.350 257 137 5 8 225 18 271 4.22e-27 114
Msa0929110 AT5G07210.1 31.399 293 122 7 8 223 16 306 7.63e-26 110
Msa0929110 AT2G01760.3 35.882 170 86 3 57 203 22 191 2.18e-24 103
Msa0929110 AT2G27070.1 36.842 209 88 6 57 223 95 301 4.96e-24 104
Msa0929110 AT5G49240.1 31.602 231 116 4 8 196 42 272 8.72e-24 100
Msa0929110 AT2G01760.2 28.986 276 118 5 6 203 9 284 1.09e-23 102
Msa0929110 AT1G67710.1 31.395 258 125 6 7 214 10 265 2.06e-22 99.8
Msa0929110 AT1G67710.2 34.615 182 93 5 57 214 21 200 9.89e-19 88.6
Msa0929110 AT3G46640.2 46.512 86 42 1 144 229 141 222 3.90e-18 85.1
Msa0929110 AT3G46640.1 46.512 86 42 1 144 229 141 222 3.90e-18 85.1
Msa0929110 AT3G10760.1 43.158 95 46 1 120 206 70 164 4.35e-18 85.1
Msa0929110 AT3G46640.3 46.512 86 42 1 144 229 141 222 4.42e-18 85.1
Msa0929110 AT5G59570.2 38.532 109 59 2 106 206 92 200 5.28e-18 84.3
Msa0929110 AT5G59570.1 38.532 109 59 2 106 206 92 200 5.28e-18 84.3
Msa0929110 AT1G67710.3 33.516 182 95 5 57 214 12 191 6.23e-18 85.9
Msa0929110 AT2G40970.1 45.122 82 45 0 145 226 103 184 6.29e-17 80.5
Msa0929110 AT5G05090.1 55.000 60 27 0 144 203 78 137 7.04e-17 80.5
Msa0929110 AT3G62670.1 26.293 232 125 6 9 199 42 268 8.54e-17 82.4
Msa0929110 AT5G44190.2 47.143 70 37 0 144 213 144 213 9.42e-14 72.4
Msa0929110 AT5G44190.1 47.143 70 37 0 144 213 144 213 1.07e-13 72.8
Msa0929110 AT3G04030.2 44.615 65 32 1 140 200 34 98 1.95e-12 68.9
Msa0929110 AT5G18240.2 45.455 66 31 2 140 200 34 99 1.20e-11 66.2
Msa0929110 AT5G18240.3 45.455 66 31 2 140 200 34 99 1.20e-11 66.2
Msa0929110 AT5G18240.5 45.455 66 31 2 140 200 34 99 1.35e-11 66.2
Msa0929110 AT5G18240.1 45.455 66 31 2 140 200 34 99 1.38e-11 66.2
Msa0929110 AT5G18240.4 45.455 66 31 2 140 200 34 99 1.38e-11 66.2
Msa0929110 AT2G20570.1 45.455 66 36 0 146 211 152 217 7.88e-11 63.9

Find 69 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATATAGCTTTGGGTTTAA+TGG 0.190557 6_2:+76341503 Msa0929110:CDS
TCGTTCAATCATTTCAATTA+TGG 0.195385 6_2:+76341386 Msa0929110:CDS
TTAACAAGGAACTTAAAATT+TGG 0.202387 6_2:+76341323 Msa0929110:CDS
ATTTCATTGATGACAGAAAT+TGG 0.248135 6_2:-76341092 None:intergenic
CAGATCCAACATGCAAGTTT+TGG 0.289471 6_2:+76337659 Msa0929110:CDS
AAATGTATCCAGTCATTTAC+AGG 0.301898 6_2:+76340458 Msa0929110:CDS
GTAGAAGCGACATCATAAAA+TGG 0.305371 6_2:-76341236 None:intergenic
CCATTAAACCCAAAGCTATA+TGG 0.320064 6_2:-76341503 None:intergenic
TTAAGAAACCAAGGCTTGTT+TGG 0.322427 6_2:+76340133 Msa0929110:CDS
GACCAAGATCAAGGGGAGTT+TGG 0.325620 6_2:+76340105 Msa0929110:CDS
CTGAAGTCTTCAGCACAAAA+TGG 0.336425 6_2:-76339937 None:intergenic
ATGTTATTCCATATAGCTTT+GGG 0.337073 6_2:+76341495 Msa0929110:CDS
TCAATTATGGTGTGAAGAAC+TGG 0.359272 6_2:+76341399 Msa0929110:CDS
AATGTTATTCCATATAGCTT+TGG 0.374067 6_2:+76341494 Msa0929110:CDS
GTAAATGTTTCTGAGAATAG+AGG 0.388331 6_2:+76341527 Msa0929110:CDS
GGACCATGATGACGAGTCTT+TGG 0.388380 6_2:+76337686 Msa0929110:CDS
GAATGCTACTTCCGTCAATA+AGG 0.388592 6_2:+76341583 Msa0929110:CDS
CTGAAGACTTCAGAGACATT+TGG 0.388892 6_2:+76339947 Msa0929110:CDS
GGAACAGGAACTACGAATAA+AGG 0.399758 6_2:+76341461 Msa0929110:CDS
CTCCAAACTCCCCTTGATCT+TGG 0.403396 6_2:-76340107 None:intergenic
CAAAGCATGGTGAGCATCCT+TGG 0.404636 6_2:-76339248 None:intergenic
TTGTATGCTATTAGACAGAT+TGG 0.429839 6_2:+76340180 Msa0929110:CDS
CAAGGATGCTCACCATGCTT+TGG 0.455806 6_2:+76339249 Msa0929110:CDS
TGTTGTGCCAAAGAAAATCT+TGG 0.455958 6_2:+76340404 Msa0929110:CDS
TCTACCAGCTATCCGTCATA+TGG 0.457430 6_2:+76341254 Msa0929110:CDS
TATAGCAAGTGAAGAAGAAG+AGG 0.457530 6_2:+76340020 Msa0929110:intron
AAGTTCCTTGTTAAGAAACT+TGG 0.468839 6_2:-76341314 None:intergenic
CCGTCATATGGAGTTAGAAA+AGG 0.479711 6_2:+76341266 Msa0929110:CDS
AGATCAACAGAAGTGGGAAC+AGG 0.481464 6_2:+76341446 Msa0929110:CDS
TACCGACATCATAGTATAGT+TGG 0.481804 6_2:+76341356 Msa0929110:CDS
TGACGAGTCTTTGGCATCAC+TGG 0.484509 6_2:+76337695 Msa0929110:CDS
GTTGAAATCAGCCTTATTGA+CGG 0.487701 6_2:-76341594 None:intergenic
TGTGATGATGACCAAGATCA+AGG 0.491694 6_2:+76340096 Msa0929110:CDS
TTATTAGTCCAAACAAGCCT+TGG 0.494508 6_2:-76340141 None:intergenic
CTGAAAGATGTACAAGAGAA+AGG 0.494563 6_2:+76341014 Msa0929110:CDS
AATGACATGGAGATTATGTC+TGG 0.501152 6_2:-76339883 None:intergenic
TAGAAGCGACATCATAAAAT+GGG 0.505067 6_2:-76341235 None:intergenic
GCTATTAGACAGATTGGAAT+GGG 0.512204 6_2:+76340186 Msa0929110:CDS
GTACAAGAGAAAGGAATGGA+AGG 0.530188 6_2:+76341023 Msa0929110:CDS
TTTAAGTTCAAAATTTGCAT+CGG 0.531556 6_2:+76341064 Msa0929110:CDS
AGATGTACAAGAGAAAGGAA+TGG 0.533550 6_2:+76341019 Msa0929110:CDS
TGAATGTTCCAAACCTAACA+AGG 0.533568 6_2:+76340433 Msa0929110:CDS
AGACATTTGGAAGTATGCAC+TGG 0.537346 6_2:+76339960 Msa0929110:CDS
AACTCCATATGACGGATAGC+TGG 0.539302 6_2:-76341258 None:intergenic
TGGAGTTAGAAAAGGAATGA+TGG 0.547753 6_2:+76341274 Msa0929110:CDS
TGCTATTAGACAGATTGGAA+TGG 0.548483 6_2:+76340185 Msa0929110:CDS
ATGCCAAAGACTCGTCATCA+TGG 0.549394 6_2:-76337689 None:intergenic
TAAATGTTTCTGAGAATAGA+GGG 0.551447 6_2:+76341528 Msa0929110:CDS
GTGATGATGACCAAGATCAA+GGG 0.559984 6_2:+76340097 Msa0929110:CDS
ATCACTGGCTAATATACTCA+TGG 0.566664 6_2:+76337710 Msa0929110:CDS
CAAGAATAGATCAACAGAAG+TGG 0.568819 6_2:+76341439 Msa0929110:CDS
TGTCGCCAAGTTTCTTAACA+AGG 0.569859 6_2:+76341309 Msa0929110:CDS
CAAGAGAAAGGAATGGAAGG+AGG 0.573386 6_2:+76341026 Msa0929110:CDS
AAGAATAGATCAACAGAAGT+GGG 0.573718 6_2:+76341440 Msa0929110:CDS
CACAACCAAAACTTGCATGT+TGG 0.574671 6_2:-76337664 None:intergenic
GATTCATCTGCATAAATCAA+AGG 0.587541 6_2:+76341550 Msa0929110:CDS
TTGGAGTTGTTAAGAAACCA+AGG 0.591730 6_2:+76340124 Msa0929110:CDS
CTCGAAGAGTGACCAAAGCA+TGG 0.605583 6_2:-76339261 None:intergenic
TGCTCCATGTTCTAATGACA+TGG 0.612114 6_2:-76339896 None:intergenic
GGTGTGAAGAACTGGAGCGT+TGG 0.621741 6_2:+76341407 Msa0929110:CDS
TTCCAACTATACTATGATGT+CGG 0.631257 6_2:-76341358 None:intergenic
ATCTCCATGTCATTAGAACA+TGG 0.631773 6_2:+76339892 Msa0929110:CDS
TGATGATGACCAAGATCAAG+GGG 0.634597 6_2:+76340098 Msa0929110:CDS
TGGCTAATATACTCATGGCA+TGG 0.635039 6_2:+76337715 Msa0929110:CDS
GAATGTTCCAAACCTAACAA+GGG 0.643998 6_2:+76340434 Msa0929110:CDS
TAAGGCTGATTTCAACAATG+AGG 0.645850 6_2:+76341601 Msa0929110:CDS
CAGGAACTACGAATAAAGGA+AGG 0.649263 6_2:+76341465 Msa0929110:CDS
ATTAGACAGATTGGAATGGG+AGG 0.653232 6_2:+76340189 Msa0929110:CDS
CTCATGGCATGGCAATACAA+AGG 0.657436 6_2:+76337726 Msa0929110:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTAACAAAACATTTTA+GGG - chr6_2:76338834-76338853 None:intergenic 10.0%
!!! TATATTTAACAAAACATTTT+AGG - chr6_2:76338835-76338854 None:intergenic 10.0%
!! AAAACCAAATAAAAAAAATT+AGG - chr6_2:76339210-76339229 None:intergenic 10.0%
!! ATAAAAATAAAATAATTGCA+AGG - chr6_2:76339731-76339750 None:intergenic 10.0%
!!! AATAAATAGTTTATTTTTCT+TGG - chr6_2:76339989-76340008 None:intergenic 10.0%
!!! TATATAAAATGGAAAATTTT+AGG - chr6_2:76340678-76340697 None:intergenic 10.0%
!!! ACATATATTCTAAAAATATT+TGG - chr6_2:76340934-76340953 None:intergenic 10.0%
!! TTATATTTAATTAAGTAGTC+TGG - chr6_2:76338675-76338694 None:intergenic 15.0%
!! AAAACAAAGTTTAATATCAT+TGG + chr6_2:76338856-76338875 Msa0929110:intron 15.0%
!!! ATTATGAATAAACTTTTAAC+CGG + chr6_2:76338945-76338964 Msa0929110:intron 15.0%
!!! TTTTAACTTAAATTACTGAA+TGG - chr6_2:76339131-76339150 None:intergenic 15.0%
!!! ATGACCTAATTTTTTTTATT+TGG + chr6_2:76339203-76339222 Msa0929110:intron 15.0%
!! TGGATGAAATTTAATAAATA+AGG + chr6_2:76339567-76339586 Msa0929110:intron 15.0%
!! GGATGAAATTTAATAAATAA+GGG + chr6_2:76339568-76339587 Msa0929110:intron 15.0%
!!! AATAAATAAGGGTATAATAA+TGG + chr6_2:76339579-76339598 Msa0929110:intron 15.0%
!!! ATTAGTCTTCATAAAAAAAA+AGG - chr6_2:76340559-76340578 None:intergenic 15.0%
!!! ACTGTTTTAAATAATAAATG+AGG - chr6_2:76340763-76340782 None:intergenic 15.0%
!! AAAAATGAAAAAATTAGAGT+AGG - chr6_2:76340908-76340927 None:intergenic 15.0%
!! AAAGTAATTCAATTATCTGA+TGG - chr6_2:76337774-76337793 None:intergenic 20.0%
!! ATTAAAATACCACAATTGAA+AGG - chr6_2:76337985-76338004 None:intergenic 20.0%
!!! TACAAATACTTTGTTTGTAA+AGG + chr6_2:76338190-76338209 Msa0929110:intron 20.0%
!!! AATCATTCTTTGTTTTTGAA+GGG - chr6_2:76338227-76338246 None:intergenic 20.0%
!!! AAATCATTCTTTGTTTTTGA+AGG - chr6_2:76338228-76338247 None:intergenic 20.0%
!! TTATATGTATGAGTGAAAAT+GGG + chr6_2:76338518-76338537 Msa0929110:intron 20.0%
!!! TGGTATGTTAGTTTTTTTTT+AGG + chr6_2:76338876-76338895 Msa0929110:intron 20.0%
!!! GGTATGTTAGTTTTTTTTTA+GGG + chr6_2:76338877-76338896 Msa0929110:intron 20.0%
!!! GTATGTTAGTTTTTTTTTAG+GGG + chr6_2:76338878-76338897 Msa0929110:intron 20.0%
!! TTATATATTTCTTCCTTATC+AGG - chr6_2:76339052-76339071 None:intergenic 20.0%
!! GAAGAAATATATAACTCTTA+TGG + chr6_2:76339058-76339077 Msa0929110:intron 20.0%
!!! TTTCATATATTTGGAATGAA+TGG + chr6_2:76339319-76339338 Msa0929110:intron 20.0%
!! AAATGATATTTACCTATAAC+AGG - chr6_2:76339385-76339404 None:intergenic 20.0%
!!! ATTAATTGTGTTGATTTCAA+TGG + chr6_2:76339484-76339503 Msa0929110:intron 20.0%
!! CAAAATAATAAATGTTGCAT+TGG + chr6_2:76339605-76339624 Msa0929110:intron 20.0%
!!! TTAGTTAGCTTTCTATATAA+TGG - chr6_2:76340344-76340363 None:intergenic 20.0%
!!! AGACTAATGAAATTTTTTGA+AGG + chr6_2:76340571-76340590 Msa0929110:intron 20.0%
!! AGATATTCTAAATATTGTTG+AGG + chr6_2:76340595-76340614 Msa0929110:intron 20.0%
!! GTTATGGTGTATATATAAAA+TGG - chr6_2:76340689-76340708 None:intergenic 20.0%
!!! TTTAAGTTCAAAATTTGCAT+CGG + chr6_2:76341064-76341083 Msa0929110:CDS 20.0%
!! TTAACAAGGAACTTAAAATT+TGG + chr6_2:76341323-76341342 Msa0929110:CDS 20.0%
! AAACAGTAGAATACATTGTT+TGG - chr6_2:76337870-76337889 None:intergenic 25.0%
! ATTAATTATCAGAAGCCAAA+GGG - chr6_2:76338021-76338040 None:intergenic 25.0%
! AACCAATCCTTAAAATAAAG+GGG - chr6_2:76338262-76338281 None:intergenic 25.0%
! GAACCAATCCTTAAAATAAA+GGG - chr6_2:76338263-76338282 None:intergenic 25.0%
! TGAACCAATCCTTAAAATAA+AGG - chr6_2:76338264-76338283 None:intergenic 25.0%
! CTTATATGTATGAGTGAAAA+TGG + chr6_2:76338517-76338536 Msa0929110:intron 25.0%
!! TTTTCCATTTTAAACTGAGA+AGG + chr6_2:76338601-76338620 Msa0929110:intron 25.0%
! TGAATCAAATTAACCTGATA+AGG + chr6_2:76339036-76339055 Msa0929110:intron 25.0%
! AATATTAATGCACACTCAAT+AGG + chr6_2:76339094-76339113 Msa0929110:intron 25.0%
! ATCAGTGAGTTTCATATATT+TGG + chr6_2:76339310-76339329 Msa0929110:intron 25.0%
!!! AGAGTATTTTTTAGTTGGAA+GGG - chr6_2:76339410-76339429 None:intergenic 25.0%
!!! TAGAGAGAGTATTTTTTAGT+TGG - chr6_2:76339415-76339434 None:intergenic 25.0%
! CTCTAAATTATAGTCGTTTA+AGG + chr6_2:76339436-76339455 Msa0929110:intron 25.0%
! CCACTAACTACAATTAATAA+GGG - chr6_2:76339536-76339555 None:intergenic 25.0%
! TCCACTAACTACAATTAATA+AGG - chr6_2:76339537-76339556 None:intergenic 25.0%
!! CATCACTATTTGAAACAAAA+AGG - chr6_2:76339848-76339867 None:intergenic 25.0%
! ATCTGAAAGAGAGAAAAAAA+AGG - chr6_2:76340385-76340404 None:intergenic 25.0%
!! ATTATCTCCAAGATTTTCTT+TGG - chr6_2:76340414-76340433 None:intergenic 25.0%
! AAAAAAAACCTGTAAATGAC+TGG - chr6_2:76340469-76340488 None:intergenic 25.0%
! TACAAAAATAAACGGATAAC+AGG - chr6_2:76340711-76340730 None:intergenic 25.0%
! GTATGCAAAGAATATTATGT+TGG + chr6_2:76340783-76340802 Msa0929110:intron 25.0%
!! ATGAAATTGGTAACTGAATT+TGG - chr6_2:76340880-76340899 None:intergenic 25.0%
! AGAGTAGGAAAAAATGAAAT+TGG - chr6_2:76340893-76340912 None:intergenic 25.0%
!! ATTTCATTGATGACAGAAAT+TGG - chr6_2:76341095-76341114 None:intergenic 25.0%
! TCGTTCAATCATTTCAATTA+TGG + chr6_2:76341386-76341405 Msa0929110:CDS 25.0%
! AATGTTATTCCATATAGCTT+TGG + chr6_2:76341494-76341513 Msa0929110:CDS 25.0%
! ATGTTATTCCATATAGCTTT+GGG + chr6_2:76341495-76341514 Msa0929110:CDS 25.0%
!! TAAATGTTTCTGAGAATAGA+GGG + chr6_2:76341528-76341547 Msa0929110:CDS 25.0%
CTGATGGTTAAATAGAAAAG+AGG - chr6_2:76337758-76337777 None:intergenic 30.0%
! AAAGTTTTGCCTTTCAATTG+TGG + chr6_2:76337973-76337992 Msa0929110:intron 30.0%
ATTGTTAGATATCAACCCTT+TGG + chr6_2:76338003-76338022 Msa0929110:intron 30.0%
GATTAATTATCAGAAGCCAA+AGG - chr6_2:76338022-76338041 None:intergenic 30.0%
! ATCTTGGCTAAAGCAAATTT+TGG - chr6_2:76338081-76338100 None:intergenic 30.0%
! AATTTGCTTTAGCCAAGATT+TGG + chr6_2:76338082-76338101 Msa0929110:intron 30.0%
ACCAATCCTTAAAATAAAGG+GGG - chr6_2:76338261-76338280 None:intergenic 30.0%
AGACAATCAAAAGGGAAAAA+AGG - chr6_2:76338484-76338503 None:intergenic 30.0%
!! AAGTGTTGAGACAATCAAAA+GGG - chr6_2:76338492-76338511 None:intergenic 30.0%
!! AAAGTGTTGAGACAATCAAA+AGG - chr6_2:76338493-76338512 None:intergenic 30.0%
! TTAGCCTTCTCAGTTTAAAA+TGG - chr6_2:76338608-76338627 None:intergenic 30.0%
! TAATTAAGTAGTCTGGTTTG+TGG - chr6_2:76338668-76338687 None:intergenic 30.0%
!!! TGTTAGTTTTTTTTTAGGGG+AGG + chr6_2:76338881-76338900 Msa0929110:intron 30.0%
!!! GTTAGTTTTTTTTTAGGGGA+GGG + chr6_2:76338882-76338901 Msa0929110:intron 30.0%
!!! TTAGTTTTTTTTTAGGGGAG+GGG + chr6_2:76338883-76338902 Msa0929110:intron 30.0%
! AGAATAAGTTGAGCAAAGTT+AGG - chr6_2:76338993-76339012 None:intergenic 30.0%
! TATTCTCAAACAGGAGTTTT+AGG + chr6_2:76339007-76339026 Msa0929110:intron 30.0%
!! ACTCATCTTGAATTTGCTTT+TGG - chr6_2:76339354-76339373 None:intergenic 30.0%
!!! GAGTATTTTTTAGTTGGAAG+GGG - chr6_2:76339409-76339428 None:intergenic 30.0%
!!! GAGAGTATTTTTTAGTTGGA+AGG - chr6_2:76339411-76339430 None:intergenic 30.0%
CCCTTATTAATTGTAGTTAG+TGG + chr6_2:76339533-76339552 Msa0929110:intron 30.0%
TTGTATGCTATTAGACAGAT+TGG + chr6_2:76340180-76340199 Msa0929110:CDS 30.0%
AAATGTATCCAGTCATTTAC+AGG + chr6_2:76340458-76340477 Msa0929110:CDS 30.0%
AATAAACGGATAACAGGTTA+TGG - chr6_2:76340705-76340724 None:intergenic 30.0%
! TTTTCGCTTGAAAAAGTGAA+AGG - chr6_2:76341151-76341170 None:intergenic 30.0%
TAGAAGCGACATCATAAAAT+GGG - chr6_2:76341238-76341257 None:intergenic 30.0%
AAGTTCCTTGTTAAGAAACT+TGG - chr6_2:76341317-76341336 None:intergenic 30.0%
TTCCAACTATACTATGATGT+CGG - chr6_2:76341361-76341380 None:intergenic 30.0%
AAGAATAGATCAACAGAAGT+GGG + chr6_2:76341440-76341459 Msa0929110:CDS 30.0%
! GTAAATGTTTCTGAGAATAG+AGG + chr6_2:76341527-76341546 Msa0929110:CDS 30.0%
GATTCATCTGCATAAATCAA+AGG + chr6_2:76341550-76341569 Msa0929110:CDS 30.0%
! ATCACTGGCTAATATACTCA+TGG + chr6_2:76337710-76337729 Msa0929110:CDS 35.0%
AGATTTGCAATGCATACACA+AGG - chr6_2:76337903-76337922 None:intergenic 35.0%
AGACACTAGATTCCAAATCT+TGG - chr6_2:76338097-76338116 None:intergenic 35.0%
!!! TCCCCCTTTATTTTAAGGAT+TGG + chr6_2:76338257-76338276 Msa0929110:intron 35.0%
!!! ATTTTAAGGATTGGTTCACG+TGG + chr6_2:76338266-76338285 Msa0929110:intron 35.0%
CTACATTGTAGGATTCTCAA+GGG - chr6_2:76338552-76338571 None:intergenic 35.0%
!!! TAGTTTTTTTTTAGGGGAGG+GGG + chr6_2:76338884-76338903 Msa0929110:intron 35.0%
! CTTTTAACCGGACTATACTT+AGG + chr6_2:76338957-76338976 Msa0929110:intron 35.0%
TGCTCAACTTATTCTCAAAC+AGG + chr6_2:76338998-76339017 Msa0929110:intron 35.0%
GAGTTTCAACTACCTGTTAT+AGG + chr6_2:76339370-76339389 Msa0929110:intron 35.0%
AGTTAGTGGAGTAGTTAAGT+TGG + chr6_2:76339547-76339566 Msa0929110:intron 35.0%
AGACAATTATTGTGAGACGT+AGG + chr6_2:76339674-76339693 Msa0929110:intron 35.0%
GACAATTATTGTGAGACGTA+GGG + chr6_2:76339675-76339694 Msa0929110:intron 35.0%
AATGACATGGAGATTATGTC+TGG - chr6_2:76339886-76339905 None:intergenic 35.0%
ATCTCCATGTCATTAGAACA+TGG + chr6_2:76339892-76339911 Msa0929110:CDS 35.0%
TATAGCAAGTGAAGAAGAAG+AGG + chr6_2:76340020-76340039 Msa0929110:intron 35.0%
TTGGAGTTGTTAAGAAACCA+AGG + chr6_2:76340124-76340143 Msa0929110:CDS 35.0%
! TTAAGAAACCAAGGCTTGTT+TGG + chr6_2:76340133-76340152 Msa0929110:CDS 35.0%
TTATTAGTCCAAACAAGCCT+TGG - chr6_2:76340144-76340163 None:intergenic 35.0%
TGCTATTAGACAGATTGGAA+TGG + chr6_2:76340185-76340204 Msa0929110:CDS 35.0%
GCTATTAGACAGATTGGAAT+GGG + chr6_2:76340186-76340205 Msa0929110:CDS 35.0%
TGTTGTGCCAAAGAAAATCT+TGG + chr6_2:76340404-76340423 Msa0929110:CDS 35.0%
TGAATGTTCCAAACCTAACA+AGG + chr6_2:76340433-76340452 Msa0929110:CDS 35.0%
GAATGTTCCAAACCTAACAA+GGG + chr6_2:76340434-76340453 Msa0929110:CDS 35.0%
! ACATTTTCCCTTGTTAGGTT+TGG - chr6_2:76340444-76340463 None:intergenic 35.0%
! TGGATACATTTTCCCTTGTT+AGG - chr6_2:76340449-76340468 None:intergenic 35.0%
!! GAATATTATGTTGGTTCGAG+TGG + chr6_2:76340792-76340811 Msa0929110:intron 35.0%
CTGAAAGATGTACAAGAGAA+AGG + chr6_2:76341014-76341033 Msa0929110:CDS 35.0%
AGATGTACAAGAGAAAGGAA+TGG + chr6_2:76341019-76341038 Msa0929110:CDS 35.0%
GCGAAAAACTCTTTCAATGA+TGG + chr6_2:76341164-76341183 Msa0929110:CDS 35.0%
! TTTTCGCTTGAAAAGGTGAA+AGG - chr6_2:76341214-76341233 None:intergenic 35.0%
!! AATGGGTTTTTCGCTTGAAA+AGG - chr6_2:76341221-76341240 None:intergenic 35.0%
GTAGAAGCGACATCATAAAA+TGG - chr6_2:76341239-76341258 None:intergenic 35.0%
! CCTTTTCTAACTCCATATGA+CGG - chr6_2:76341269-76341288 None:intergenic 35.0%
TGGAGTTAGAAAAGGAATGA+TGG + chr6_2:76341274-76341293 Msa0929110:CDS 35.0%
TACCGACATCATAGTATAGT+TGG + chr6_2:76341356-76341375 Msa0929110:CDS 35.0%
TCAATTATGGTGTGAAGAAC+TGG + chr6_2:76341399-76341418 Msa0929110:CDS 35.0%
CAAGAATAGATCAACAGAAG+TGG + chr6_2:76341439-76341458 Msa0929110:CDS 35.0%
CCATTAAACCCAAAGCTATA+TGG - chr6_2:76341506-76341525 None:intergenic 35.0%
!! CCATATAGCTTTGGGTTTAA+TGG + chr6_2:76341503-76341522 Msa0929110:CDS 35.0%
!! GTTGAAATCAGCCTTATTGA+CGG - chr6_2:76341597-76341616 None:intergenic 35.0%
! TAAGGCTGATTTCAACAATG+AGG + chr6_2:76341601-76341620 Msa0929110:CDS 35.0%
! CAGATCCAACATGCAAGTTT+TGG + chr6_2:76337659-76337678 Msa0929110:CDS 40.0%
CACAACCAAAACTTGCATGT+TGG - chr6_2:76337667-76337686 None:intergenic 40.0%
!!! CAACATGCAAGTTTTGGTTG+TGG + chr6_2:76337665-76337684 Msa0929110:CDS 40.0%
TGGCTAATATACTCATGGCA+TGG + chr6_2:76337715-76337734 Msa0929110:CDS 40.0%
TAATCCAGAATCTAGCTGAG+AGG + chr6_2:76338037-76338056 Msa0929110:intron 40.0%
!!! TGCGATCCCCCTTTATTTTA+AGG + chr6_2:76338252-76338271 Msa0929110:intron 40.0%
TGACACAATTCAAAGACTCG+AGG - chr6_2:76338421-76338440 None:intergenic 40.0%
GCTACATTGTAGGATTCTCA+AGG - chr6_2:76338553-76338572 None:intergenic 40.0%
AGAATCCTACAATGTAGCCT+AGG + chr6_2:76338555-76338574 Msa0929110:intron 40.0%
AACTTGATCTGATCTGACCT+AGG - chr6_2:76338575-76338594 None:intergenic 40.0%
!!! AGTTTTTTTTTAGGGGAGGG+GGG + chr6_2:76338885-76338904 Msa0929110:intron 40.0%
CACAATGCCTAAGTATAGTC+CGG - chr6_2:76338967-76338986 None:intergenic 40.0%
! ATTTTCAGTTCGAACTGCCA+AGG + chr6_2:76339231-76339250 Msa0929110:intron 40.0%
TGCTCCATGTTCTAATGACA+TGG - chr6_2:76339899-76339918 None:intergenic 40.0%
CTGAAGTCTTCAGCACAAAA+TGG - chr6_2:76339940-76339959 None:intergenic 40.0%
CTGAAGACTTCAGAGACATT+TGG + chr6_2:76339947-76339966 Msa0929110:CDS 40.0%
! AGACATTTGGAAGTATGCAC+TGG + chr6_2:76339960-76339979 Msa0929110:CDS 40.0%
! TGTGATGATGACCAAGATCA+AGG + chr6_2:76340096-76340115 Msa0929110:CDS 40.0%
! GTGATGATGACCAAGATCAA+GGG + chr6_2:76340097-76340116 Msa0929110:CDS 40.0%
! TGATGATGACCAAGATCAAG+GGG + chr6_2:76340098-76340117 Msa0929110:CDS 40.0%
ATTAGACAGATTGGAATGGG+AGG + chr6_2:76340189-76340208 Msa0929110:CDS 40.0%
GTACAAGAGAAAGGAATGGA+AGG + chr6_2:76341023-76341042 Msa0929110:CDS 40.0%
CCGTCATATGGAGTTAGAAA+AGG + chr6_2:76341266-76341285 Msa0929110:CDS 40.0%
TGTCGCCAAGTTTCTTAACA+AGG + chr6_2:76341309-76341328 Msa0929110:CDS 40.0%
GGAACAGGAACTACGAATAA+AGG + chr6_2:76341461-76341480 Msa0929110:CDS 40.0%
CAGGAACTACGAATAAAGGA+AGG + chr6_2:76341465-76341484 Msa0929110:CDS 40.0%
! GAATGCTACTTCCGTCAATA+AGG + chr6_2:76341583-76341602 Msa0929110:CDS 40.0%
ATGCCAAAGACTCGTCATCA+TGG - chr6_2:76337692-76337711 None:intergenic 45.0%
CTCATGGCATGGCAATACAA+AGG + chr6_2:76337726-76337745 Msa0929110:CDS 45.0%
TCAACCTCTCAGCTAGATTC+TGG - chr6_2:76338044-76338063 None:intergenic 45.0%
!!! AGGATTGGTTCACGTGGTTT+TGG + chr6_2:76338272-76338291 Msa0929110:intron 45.0%
TCTGACCTAGGCTACATTGT+AGG - chr6_2:76338563-76338582 None:intergenic 45.0%
! TAAGTAGTCTGGTTTGTGGC+AGG - chr6_2:76338664-76338683 None:intergenic 45.0%
!!! GTTTTTTTTTAGGGGAGGGG+GGG + chr6_2:76338886-76338905 Msa0929110:intron 45.0%
CAAGAGAAAGGAATGGAAGG+AGG + chr6_2:76341026-76341045 Msa0929110:CDS 45.0%
TCTACCAGCTATCCGTCATA+TGG + chr6_2:76341254-76341273 Msa0929110:CDS 45.0%
!! AACTCCATATGACGGATAGC+TGG - chr6_2:76341261-76341280 None:intergenic 45.0%
AGATCAACAGAAGTGGGAAC+AGG + chr6_2:76341446-76341465 Msa0929110:CDS 45.0%
!!! TTTTTTTTTAAAGTTTATTT+AGG + chr6_2:76338630-76338649 Msa0929110:intron 5.0%
!!! TAAAATATTCAATATTTTAA+TGG + chr6_2:76339146-76339165 Msa0929110:intron 5.0%
!! ATATATTATACAAAAATAAA+CGG - chr6_2:76340719-76340738 None:intergenic 5.0%
! GGACCATGATGACGAGTCTT+TGG + chr6_2:76337686-76337705 Msa0929110:CDS 50.0%
TGACGAGTCTTTGGCATCAC+TGG + chr6_2:76337695-76337714 Msa0929110:CDS 50.0%
CAAAGCATGGTGAGCATCCT+TGG - chr6_2:76339251-76339270 None:intergenic 50.0%
CAAGGATGCTCACCATGCTT+TGG + chr6_2:76339249-76339268 Msa0929110:CDS 50.0%
CTCGAAGAGTGACCAAAGCA+TGG - chr6_2:76339264-76339283 None:intergenic 50.0%
GACCAAGATCAAGGGGAGTT+TGG + chr6_2:76340105-76340124 Msa0929110:CDS 50.0%
CTCCAAACTCCCCTTGATCT+TGG - chr6_2:76340110-76340129 None:intergenic 50.0%
GACAGATTGGAATGGGAGGT+AGG + chr6_2:76340193-76340212 Msa0929110:intron 50.0%
GGTGTGAAGAACTGGAGCGT+TGG + chr6_2:76341407-76341426 Msa0929110:CDS 55.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 76337648 76341670 76337648 ID=Msa0929110;Name=Msa0929110
chr6_2 mRNA 76337648 76341670 76337648 ID=Msa0929110-mRNA-1;Parent=Msa0929110;Name=Msa0929110-mRNA-1;_AED=0.12;_eAED=0.14;_QI=0|0|0|1|0.8|0.83|6|0|419
chr6_2 exon 76337648 76337747 76337648 ID=Msa0929110-mRNA-1:exon:12863;Parent=Msa0929110-mRNA-1
chr6_2 exon 76339239 76339313 76339239 ID=Msa0929110-mRNA-1:exon:12864;Parent=Msa0929110-mRNA-1
chr6_2 exon 76339863 76340012 76339863 ID=Msa0929110-mRNA-1:exon:12865;Parent=Msa0929110-mRNA-1
chr6_2 exon 76340025 76340210 76340025 ID=Msa0929110-mRNA-1:exon:12866;Parent=Msa0929110-mRNA-1
chr6_2 exon 76340403 76340479 76340403 ID=Msa0929110-mRNA-1:exon:12867;Parent=Msa0929110-mRNA-1
chr6_2 exon 76340999 76341670 76340999 ID=Msa0929110-mRNA-1:exon:12868;Parent=Msa0929110-mRNA-1
chr6_2 CDS 76337648 76337747 76337648 ID=Msa0929110-mRNA-1:cds;Parent=Msa0929110-mRNA-1
chr6_2 CDS 76339239 76339313 76339239 ID=Msa0929110-mRNA-1:cds;Parent=Msa0929110-mRNA-1
chr6_2 CDS 76339863 76340012 76339863 ID=Msa0929110-mRNA-1:cds;Parent=Msa0929110-mRNA-1
chr6_2 CDS 76340025 76340210 76340025 ID=Msa0929110-mRNA-1:cds;Parent=Msa0929110-mRNA-1
chr6_2 CDS 76340403 76340479 76340403 ID=Msa0929110-mRNA-1:cds;Parent=Msa0929110-mRNA-1
chr6_2 CDS 76340999 76341670 76340999 ID=Msa0929110-mRNA-1:cds;Parent=Msa0929110-mRNA-1
Gene Sequence

>Msa0929110

ATGAGTTACGACAGATCCAACATGCAAGTTTTGGTTGTGGACCATGATGACGAGTCTTTGGCATCACTGGCTAATATACTCATGGCATGGCAATACAAAGTTCGAACTGCCAAGGATGCTCACCATGCTTTGGTCACTCTTCGAGACTCTCAAGTCTTGTTTGATCTCATAATCATGATGTCTAAAGATAATAGACCAGACATAATCTCCATGTCATTAGAACATGGAGCAGCACAATATATTGTTAAACCATTTTGTGCTGAAGACTTCAGAGACATTTGGAAGTATGCACTGGAAGCCAAGAAAAATAAACTATTTATTGATACAAGTGAAGAAGAAGAGGAGACATCAACTGATCAATTACAAACTAAAAAGAATTGTAGTAAAAGAAAGAGTTGTGATGATGACCAAGATCAAGGGGAGTTTGGAGTTGTTAAGAAACCAAGGCTTGTTTGGACTAATAATCTTCACAGTCGATTTTTGTATGCTATTAGACAGATTGGAATGGGAGATGTTGTGCCAAAGAAAATCTTGGAGATAATGAATGTTCCAAACCTAACAAGGGAAAATGTATCCAGTCATTTACAGAAGCATCGCATGTTTCTGAAAGATGTACAAGAGAAAGGAATGGAAGGAGGAGTTTCTCAGAGAGCTTTAAGTTCAAAATTTGCATCGGATCTTCCAATTTCTGTCATCAATGAAATCATTGAAAGAAGAAAAAACAGTCGATATTCAAACCTTTCACTTTTTCAAGCGAAAAACTCTTTCAATGATGGTGCTTCTACTAGCAATTCATCAAACCTTTCACCTTTTCAAGCGAAAAACCCATTTTATGATGTCGCTTCTACCAGCTATCCGTCATATGGAGTTAGAAAAGGAATGATGGCTTCTTCTTCTTTGTCGCCAAGTTTCTTAACAAGGAACTTAAAATTTGGTGATACTAGTTACCGACATCATAGTATAGTTGGAAATGATTCGTTCAATCATTTCAATTATGGTGTGAAGAACTGGAGCGTTGGATCTACAATCAAGAATAGATCAACAGAAGTGGGAACAGGAACTACGAATAAAGGAAGGTTTGATAATGTTATTCCATATAGCTTTGGGTTTAATGGAGTAAATGTTTCTGAGAATAGAGGGATTCATCTGCATAAATCAAAGGCTGCTGTTGAGAATGCTACTTCCGTCAATAAGGCTGATTTCAACAATGAGGTATGCAAACATGAATCTTTTAAAACAATCCACAATAATTTTCTATAA

Protein sequence

>Msa0929110

MSYDRSNMQVLVVDHDDESLASLANILMAWQYKVRTAKDAHHALVTLRDSQVLFDLIIMMSKDNRPDIISMSLEHGAAQYIVKPFCAEDFRDIWKYALEAKKNKLFIDTSEEEEETSTDQLQTKKNCSKRKSCDDDQDQGEFGVVKKPRLVWTNNLHSRFLYAIRQIGMGDVVPKKILEIMNVPNLTRENVSSHLQKHRMFLKDVQEKGMEGGVSQRALSSKFASDLPISVINEIIERRKNSRYSNLSLFQAKNSFNDGASTSNSSNLSPFQAKNPFYDVASTSYPSYGVRKGMMASSSLSPSFLTRNLKFGDTSYRHHSIVGNDSFNHFNYGVKNWSVGSTIKNRSTEVGTGTTNKGRFDNVIPYSFGFNGVNVSENRGIHLHKSKAAVENATSVNKADFNNEVCKHESFKTIHNNFL*