AlfalfaGEDB | Msa0929120

M. sativa cultivar zhongmu-4 / Msa0929120

KEGG: K14491
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
PFAM: PF00072.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0929120	XP_013441872.2	65.805	503	69	9	1	406	1	497	0.0	608

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0929120	sp\|Q8H7S7\|ORR21_ORYSJ	33.730	252	112	4	7	207	15	262	1.03e-35	142

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa0929120	TF	GARP-G2-like

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0929120	MtrunA17_Chr6g0473731	67.381	420	66	7	54	408	6	419	0.0	518
Msa0929120	MtrunA17_Chr7g0223971	52.294	218	66	3	60	241	1	216	1.11e-62	210
Msa0929120	MtrunA17_Chr3g0123131	32.955	264	130	4	6	222	15	278	2.67e-33	131
Msa0929120	MtrunA17_Chr4g0067981	31.900	279	131	6	6	235	33	301	5.30e-33	131
Msa0929120	MtrunA17_Chr2g0294911	32.669	251	124	5	6	217	31	275	9.44e-33	130
Msa0929120	MtrunA17_Chr1g0161431	30.627	271	136	5	6	225	13	282	6.18e-31	125
Msa0929120	MtrunA17_Chr8g0376881	31.970	269	124	5	6	222	27	288	6.48e-31	124
Msa0929120	MtrunA17_Chr3g0137101	30.120	249	119	3	8	205	12	256	6.79e-31	125
Msa0929120	MtrunA17_Chr1g0149841	32.365	241	120	3	8	205	9	249	7.16e-31	124
Msa0929120	MtrunA17_Chr7g0275891	30.797	276	128	7	8	225	9	279	5.22e-28	113

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0929120	AT3G16857.1	29.730	296	134	6	6	233	35	324	1.46e-32	130
Msa0929120	AT3G16857.2	29.730	296	134	6	6	233	35	324	1.96e-32	130
Msa0929120	AT2G01760.1	32.258	248	118	4	6	203	9	256	3.52e-29	117
Msa0929120	AT4G31920.1	31.727	249	130	4	8	223	17	258	1.02e-28	118
Msa0929120	AT3G16857.3	31.507	219	102	5	57	233	42	254	2.00e-28	118
Msa0929120	AT5G07210.2	32.281	285	122	6	8	223	16	298	2.50e-28	117
Msa0929120	AT2G25180.1	34.034	238	116	4	8	205	17	253	3.74e-28	117
Msa0929120	AT5G58080.1	30.350	257	137	5	8	225	18	271	4.22e-27	114
Msa0929120	AT5G07210.1	31.399	293	122	7	8	223	16	306	7.63e-26	110
Msa0929120	AT2G01760.3	35.882	170	86	3	57	203	22	191	2.18e-24	103

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Find 69 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGTATCCAGTCATTTAC+AGG	0.301898	6_2:+76399704	Msa0929120:CDS
AACTCCATATGACGGATAGC+TGG	0.539302	6_2:-76400504	None:intergenic
AAGAATAGATCAACAGAAGT+GGG	0.573718	6_2:+76400686	Msa0929120:CDS
AAGTTCCTTGTTAAGAAACT+TGG	0.468839	6_2:-76400560	None:intergenic
AATGACATGGAGATTATGTC+TGG	0.501152	6_2:-76399129	None:intergenic
AATGTTATTCCATATAGCTT+TGG	0.374067	6_2:+76400740	Msa0929120:CDS
AGACATTTGGAAGTATGCAC+TGG	0.537346	6_2:+76399206	Msa0929120:CDS
AGATCAACAGAAGTGGGAAC+AGG	0.481464	6_2:+76400692	Msa0929120:CDS
AGATGTACAAGAGAAAGGAA+TGG	0.533550	6_2:+76400265	Msa0929120:CDS
ATCACTGGCTAATATACTCA+TGG	0.566664	6_2:+76396958	Msa0929120:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTGATGGTTAAATAGAAAAG+AGG	-	chr6_2:76397006-76397025	None:intergenic	30.0%
ATTGTTAGATATCAACCCTT+TGG	+	chr6_2:76397251-76397270	Msa0929120:intron	30.0%
GATTAATTATCAGAAGCCAA+AGG	-	chr6_2:76397270-76397289	None:intergenic	30.0%
ACCAATCCTTAAAATAAAGG+GGG	-	chr6_2:76397509-76397528	None:intergenic	30.0%
AGACAATCAAAAGGGAAAAA+AGG	-	chr6_2:76397731-76397750	None:intergenic	30.0%
CCCTTATTAATTGTAGTTAG+TGG	+	chr6_2:76398779-76398798	Msa0929120:intron	30.0%
TTGTATGCTATTAGACAGAT+TGG	+	chr6_2:76399426-76399445	Msa0929120:CDS	30.0%
AAATGTATCCAGTCATTTAC+AGG	+	chr6_2:76399704-76399723	Msa0929120:CDS	30.0%
AATAAACGGATAACAGGTTA+TGG	-	chr6_2:76399951-76399970	None:intergenic	30.0%
TAGAAGCGACATCATAAAAT+GGG	-	chr6_2:76400484-76400503	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_2	gene	76396896	76400916	76396896	ID=Msa0929120;Name=Msa0929120
chr6_2	mRNA	76396896	76400916	76396896	ID=Msa0929120-mRNA-1;Parent=Msa0929120;Name=Msa0929120-mRNA-1;_AED=0.12;_eAED=0.14;_QI=0\|0\|0\|1\|0.8\|0.83\|6\|0\|419
chr6_2	exon	76396896	76396995	76396896	ID=Msa0929120-mRNA-1:exon:12877;Parent=Msa0929120-mRNA-1
chr6_2	exon	76398485	76398559	76398485	ID=Msa0929120-mRNA-1:exon:12878;Parent=Msa0929120-mRNA-1
chr6_2	exon	76399109	76399258	76399109	ID=Msa0929120-mRNA-1:exon:12879;Parent=Msa0929120-mRNA-1
chr6_2	exon	76399271	76399456	76399271	ID=Msa0929120-mRNA-1:exon:12880;Parent=Msa0929120-mRNA-1
chr6_2	exon	76399649	76399725	76399649	ID=Msa0929120-mRNA-1:exon:12881;Parent=Msa0929120-mRNA-1
chr6_2	exon	76400245	76400916	76400245	ID=Msa0929120-mRNA-1:exon:12882;Parent=Msa0929120-mRNA-1
chr6_2	CDS	76396896	76396995	76396896	ID=Msa0929120-mRNA-1:cds;Parent=Msa0929120-mRNA-1
chr6_2	CDS	76398485	76398559	76398485	ID=Msa0929120-mRNA-1:cds;Parent=Msa0929120-mRNA-1
chr6_2	CDS	76399109	76399258	76399109	ID=Msa0929120-mRNA-1:cds;Parent=Msa0929120-mRNA-1
chr6_2	CDS	76399271	76399456	76399271	ID=Msa0929120-mRNA-1:cds;Parent=Msa0929120-mRNA-1
chr6_2	CDS	76399649	76399725	76399649	ID=Msa0929120-mRNA-1:cds;Parent=Msa0929120-mRNA-1
chr6_2	CDS	76400245	76400916	76400245	ID=Msa0929120-mRNA-1:cds;Parent=Msa0929120-mRNA-1

Gene Sequence

>Msa0929120

ATGAGTTACGACAGATCCAACATGCAAGTTTTGGTTGTGGACCATGATGACGAGTCTTTGGCATCACTGGCTAATATACTCATGGCATGGCAATACAAAGTTCGAACTGCCAAGGATGCTCACCATGCTTTGGTCACTCTTCGAGACTCTCAAGTCTTGTTTGATCTCATAATCATGATGTCTAAAGATAATAGACCAGACATAATCTCCATGTCATTAGAACATGGAGCAGCACAATATATTGTTAAACCATTTTGTGCTGAAGACTTCAGAGACATTTGGAAGTATGCACTGGAAGCCAAGAAAAATAAACTATTTATTGATACAAGTGAAGAAGAAGAGGAGACATCAACTGATCAATTACAAACTAAAAAGAATTGTAGTAAAAGAAAGAGTTGTGATGATGACCAAGATCAAGGGGAGTTTGGAGTTGTTAAGAAACCAAGGCTTGTTTGGACTAATAATCTTCACAGTCGATTTTTGTATGCTATTAGACAGATTGGAATGGGAGATGTTGTGCCAAAGAAAATCTTGGAGATAATGAATGTTCCAAACCTAACAAGGGAAAATGTATCCAGTCATTTACAGAAGCATCGCATGTTTCTGAAAGATGTACAAGAGAAAGGAATGGAAGGAGGAGTTTCTCAGAGAGCTTTAAGTTCAAAATTTGCATCGGATCTTCCAATTTCTGTCATCAATGAAATCATTGAAAGAAGAAAAAACAGTCGATATTCAAACCTTTCACTTTTTCAAGCGAAAAACTCTTTCAATGATGGTGCTTCTACTAGCAATTCATCAAACCTTTCACCTTTTCAAGCGAAAAACCCATTTTATGATGTCGCTTCTACCAGCTATCCGTCATATGGAGTTAGAAAAGGAATGATGGCTTCTTCTTCTTTGTCGCCAAGTTTCTTAACAAGGAACTTAAAATTTGGTGATACTAGTTACCGACATCATAGTATAGTTGGAAATGATTCGTTCAATCATTTCAATTATGGTGTGAAGAACTGGAGCGTTGGATCTACAATCAAGAATAGATCAACAGAAGTGGGAACAGGAACTACGAATAAAGGAAGGTTTGATAATGTTATTCCATATAGCTTTGGGTTTAATGGAGTAAATGTTTCTGAGAATAGAGGGATTCATCTGCATAAATCAAAGGCTGCTGTTGAGAATGCTACTTCCGTCAATAAGGCTGATTTCAACAATGAGGTATGCAAACATGAATCTTTTAAAACAATCCACAATAATTTTCTATAA

Protein sequence

>Msa0929120

MSYDRSNMQVLVVDHDDESLASLANILMAWQYKVRTAKDAHHALVTLRDSQVLFDLIIMMSKDNRPDIISMSLEHGAAQYIVKPFCAEDFRDIWKYALEAKKNKLFIDTSEEEEETSTDQLQTKKNCSKRKSCDDDQDQGEFGVVKKPRLVWTNNLHSRFLYAIRQIGMGDVVPKKILEIMNVPNLTRENVSSHLQKHRMFLKDVQEKGMEGGVSQRALSSKFASDLPISVINEIIERRKNSRYSNLSLFQAKNSFNDGASTSNSSNLSPFQAKNPFYDVASTSYPSYGVRKGMMASSSLSPSFLTRNLKFGDTSYRHHSIVGNDSFNHFNYGVKNWSVGSTIKNRSTEVGTGTTNKGRFDNVIPYSFGFNGVNVSENRGIHLHKSKAAVENATSVNKADFNNEVCKHESFKTIHNNFL*