AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0929120


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0929120 MtrunA17_Chr6g0473731 67.381 420 66 7 54 408 6 419 0.0 518
Msa0929120 MtrunA17_Chr7g0223971 52.294 218 66 3 60 241 1 216 1.11e-62 210
Msa0929120 MtrunA17_Chr3g0123131 32.955 264 130 4 6 222 15 278 2.67e-33 131
Msa0929120 MtrunA17_Chr4g0067981 31.900 279 131 6 6 235 33 301 5.30e-33 131
Msa0929120 MtrunA17_Chr2g0294911 32.669 251 124 5 6 217 31 275 9.44e-33 130
Msa0929120 MtrunA17_Chr1g0161431 30.627 271 136 5 6 225 13 282 6.18e-31 125
Msa0929120 MtrunA17_Chr8g0376881 31.970 269 124 5 6 222 27 288 6.48e-31 124
Msa0929120 MtrunA17_Chr3g0137101 30.120 249 119 3 8 205 12 256 6.79e-31 125
Msa0929120 MtrunA17_Chr1g0149841 32.365 241 120 3 8 205 9 249 7.16e-31 124
Msa0929120 MtrunA17_Chr7g0275891 30.797 276 128 7 8 225 9 279 5.22e-28 113
Msa0929120 MtrunA17_Chr4g0074411 30.932 236 123 3 8 203 22 257 8.32e-27 112
Msa0929120 MtrunA17_Chr2g0304841 31.873 251 113 5 8 203 22 269 1.15e-26 112
Msa0929120 MtrunA17_Chr7g0275401 30.453 243 125 4 5 203 6 248 2.69e-26 107
Msa0929120 MtrunA17_Chr4g0074401 30.126 239 124 3 8 203 21 259 1.17e-25 109
Msa0929120 MtrunA17_Chr4g0009851 31.148 244 131 7 8 224 15 248 7.28e-25 103
Msa0929120 MtrunA17_Chr1g0149851 31.102 254 117 5 8 203 9 262 1.67e-24 105
Msa0929120 MtrunA17_Chr4g0009981 34.706 170 99 3 57 224 36 195 1.96e-24 101
Msa0929120 MtrunA17_Chr6g0471041 30.837 227 118 4 10 209 20 234 2.25e-24 104
Msa0929120 MtrunA17_Chr1g0149831 36.145 166 86 4 57 205 21 183 4.94e-23 97.1
Msa0929120 MtrunA17_Chr4g0074421 35.714 154 81 3 58 196 32 182 3.20e-22 93.6
Msa0929120 MtrunA17_Chr3g0134461 28.241 216 93 2 8 196 12 192 9.51e-22 92.4
Msa0929120 MtrunA17_Chr4g0009901 29.464 224 121 6 6 203 12 224 1.64e-21 93.6
Msa0929120 MtrunA17_Chr3g0134481 26.977 215 86 2 8 196 12 181 5.25e-18 81.6
Msa0929120 MtrunA17_Chr4g0031961 49.412 85 34 2 144 225 128 206 8.18e-18 83.6
Msa0929120 MtrunA17_Chr7g0255711 54.839 62 28 0 145 206 89 150 4.25e-17 81.3
Msa0929120 MtrunA17_Chr4g0009991 33.858 127 69 3 72 196 3 116 4.49e-14 68.6
Msa0929120 MtrunA17_Chr5g0400241 46.667 60 32 0 146 205 310 369 9.42e-12 66.6
Msa0929120 MtrunA17_Chr8g0391911 26.971 241 117 8 6 196 11 242 1.85e-11 64.3
Msa0929120 MtrunA17_Chr4g0040481 50.000 54 27 0 146 199 157 210 2.35e-11 65.1
Msa0929120 MtrunA17_Chr7g0223991 34.184 196 75 8 214 358 24 216 3.63e-11 62.8
Msa0929120 MtrunA17_Chr2g0324891 43.836 73 40 1 146 217 160 232 5.63e-11 63.9
Msa0929120 MtrunA17_Chr1g0198601 43.243 74 41 1 146 218 210 283 6.02e-11 63.9
Msa0929120 MtrunA17_Chr4g0054981 44.444 63 35 0 146 208 309 371 6.20e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0929120 AT3G16857.1 29.730 296 134 6 6 233 35 324 1.46e-32 130
Msa0929120 AT3G16857.2 29.730 296 134 6 6 233 35 324 1.96e-32 130
Msa0929120 AT2G01760.1 32.258 248 118 4 6 203 9 256 3.52e-29 117
Msa0929120 AT4G31920.1 31.727 249 130 4 8 223 17 258 1.02e-28 118
Msa0929120 AT3G16857.3 31.507 219 102 5 57 233 42 254 2.00e-28 118
Msa0929120 AT5G07210.2 32.281 285 122 6 8 223 16 298 2.50e-28 117
Msa0929120 AT2G25180.1 34.034 238 116 4 8 205 17 253 3.74e-28 117
Msa0929120 AT5G58080.1 30.350 257 137 5 8 225 18 271 4.22e-27 114
Msa0929120 AT5G07210.1 31.399 293 122 7 8 223 16 306 7.63e-26 110
Msa0929120 AT2G01760.3 35.882 170 86 3 57 203 22 191 2.18e-24 103
Msa0929120 AT2G27070.1 36.842 209 88 6 57 223 95 301 4.96e-24 104
Msa0929120 AT5G49240.1 31.602 231 116 4 8 196 42 272 8.72e-24 100
Msa0929120 AT2G01760.2 28.986 276 118 5 6 203 9 284 1.09e-23 102
Msa0929120 AT1G67710.1 31.395 258 125 6 7 214 10 265 2.06e-22 99.8
Msa0929120 AT1G67710.2 34.615 182 93 5 57 214 21 200 9.89e-19 88.6
Msa0929120 AT3G46640.2 46.512 86 42 1 144 229 141 222 3.90e-18 85.1
Msa0929120 AT3G46640.1 46.512 86 42 1 144 229 141 222 3.90e-18 85.1
Msa0929120 AT3G10760.1 43.158 95 46 1 120 206 70 164 4.35e-18 85.1
Msa0929120 AT3G46640.3 46.512 86 42 1 144 229 141 222 4.42e-18 85.1
Msa0929120 AT5G59570.2 38.532 109 59 2 106 206 92 200 5.28e-18 84.3
Msa0929120 AT5G59570.1 38.532 109 59 2 106 206 92 200 5.28e-18 84.3
Msa0929120 AT1G67710.3 33.516 182 95 5 57 214 12 191 6.23e-18 85.9
Msa0929120 AT2G40970.1 45.122 82 45 0 145 226 103 184 6.29e-17 80.5
Msa0929120 AT5G05090.1 55.000 60 27 0 144 203 78 137 7.04e-17 80.5
Msa0929120 AT3G62670.1 26.293 232 125 6 9 199 42 268 8.54e-17 82.4
Msa0929120 AT5G44190.2 47.143 70 37 0 144 213 144 213 9.42e-14 72.4
Msa0929120 AT5G44190.1 47.143 70 37 0 144 213 144 213 1.07e-13 72.8
Msa0929120 AT3G04030.2 44.615 65 32 1 140 200 34 98 1.95e-12 68.9
Msa0929120 AT5G18240.2 45.455 66 31 2 140 200 34 99 1.20e-11 66.2
Msa0929120 AT5G18240.3 45.455 66 31 2 140 200 34 99 1.20e-11 66.2
Msa0929120 AT5G18240.5 45.455 66 31 2 140 200 34 99 1.35e-11 66.2
Msa0929120 AT5G18240.1 45.455 66 31 2 140 200 34 99 1.38e-11 66.2
Msa0929120 AT5G18240.4 45.455 66 31 2 140 200 34 99 1.38e-11 66.2
Msa0929120 AT2G20570.1 45.455 66 36 0 146 211 152 217 7.88e-11 63.9

Find 69 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATATAGCTTTGGGTTTAA+TGG 0.190557 6_2:+76400749 Msa0929120:CDS
TCGTTCAATCATTTCAATTA+TGG 0.195385 6_2:+76400632 Msa0929120:CDS
TTAACAAGGAACTTAAAATT+TGG 0.202387 6_2:+76400569 Msa0929120:CDS
ATTTCATTGATGACAGAAAT+TGG 0.248135 6_2:-76400338 None:intergenic
CAGATCCAACATGCAAGTTT+TGG 0.289471 6_2:+76396907 Msa0929120:CDS
AAATGTATCCAGTCATTTAC+AGG 0.301898 6_2:+76399704 Msa0929120:CDS
GTAGAAGCGACATCATAAAA+TGG 0.305371 6_2:-76400482 None:intergenic
CCATTAAACCCAAAGCTATA+TGG 0.320064 6_2:-76400749 None:intergenic
TTAAGAAACCAAGGCTTGTT+TGG 0.322427 6_2:+76399379 Msa0929120:CDS
GACCAAGATCAAGGGGAGTT+TGG 0.325620 6_2:+76399351 Msa0929120:CDS
CTGAAGTCTTCAGCACAAAA+TGG 0.336425 6_2:-76399183 None:intergenic
ATGTTATTCCATATAGCTTT+GGG 0.337073 6_2:+76400741 Msa0929120:CDS
TCAATTATGGTGTGAAGAAC+TGG 0.359272 6_2:+76400645 Msa0929120:CDS
AATGTTATTCCATATAGCTT+TGG 0.374067 6_2:+76400740 Msa0929120:CDS
GTAAATGTTTCTGAGAATAG+AGG 0.388331 6_2:+76400773 Msa0929120:CDS
GGACCATGATGACGAGTCTT+TGG 0.388380 6_2:+76396934 Msa0929120:CDS
GAATGCTACTTCCGTCAATA+AGG 0.388592 6_2:+76400829 Msa0929120:CDS
CTGAAGACTTCAGAGACATT+TGG 0.388892 6_2:+76399193 Msa0929120:CDS
GGAACAGGAACTACGAATAA+AGG 0.399758 6_2:+76400707 Msa0929120:CDS
CTCCAAACTCCCCTTGATCT+TGG 0.403396 6_2:-76399353 None:intergenic
CAAAGCATGGTGAGCATCCT+TGG 0.404636 6_2:-76398494 None:intergenic
TTGTATGCTATTAGACAGAT+TGG 0.429839 6_2:+76399426 Msa0929120:CDS
CAAGGATGCTCACCATGCTT+TGG 0.455806 6_2:+76398495 Msa0929120:CDS
TGTTGTGCCAAAGAAAATCT+TGG 0.455958 6_2:+76399650 Msa0929120:CDS
TCTACCAGCTATCCGTCATA+TGG 0.457430 6_2:+76400500 Msa0929120:CDS
TATAGCAAGTGAAGAAGAAG+AGG 0.457530 6_2:+76399266 Msa0929120:intron
AAGTTCCTTGTTAAGAAACT+TGG 0.468839 6_2:-76400560 None:intergenic
CCGTCATATGGAGTTAGAAA+AGG 0.479711 6_2:+76400512 Msa0929120:CDS
AGATCAACAGAAGTGGGAAC+AGG 0.481464 6_2:+76400692 Msa0929120:CDS
TACCGACATCATAGTATAGT+TGG 0.481804 6_2:+76400602 Msa0929120:CDS
TGACGAGTCTTTGGCATCAC+TGG 0.484509 6_2:+76396943 Msa0929120:CDS
GTTGAAATCAGCCTTATTGA+CGG 0.487701 6_2:-76400840 None:intergenic
TGTGATGATGACCAAGATCA+AGG 0.491694 6_2:+76399342 Msa0929120:CDS
TTATTAGTCCAAACAAGCCT+TGG 0.494508 6_2:-76399387 None:intergenic
CTGAAAGATGTACAAGAGAA+AGG 0.494563 6_2:+76400260 Msa0929120:CDS
AATGACATGGAGATTATGTC+TGG 0.501152 6_2:-76399129 None:intergenic
TAGAAGCGACATCATAAAAT+GGG 0.505067 6_2:-76400481 None:intergenic
GCTATTAGACAGATTGGAAT+GGG 0.512204 6_2:+76399432 Msa0929120:CDS
GTACAAGAGAAAGGAATGGA+AGG 0.530188 6_2:+76400269 Msa0929120:CDS
TTTAAGTTCAAAATTTGCAT+CGG 0.531556 6_2:+76400310 Msa0929120:CDS
AGATGTACAAGAGAAAGGAA+TGG 0.533550 6_2:+76400265 Msa0929120:CDS
TGAATGTTCCAAACCTAACA+AGG 0.533568 6_2:+76399679 Msa0929120:CDS
AGACATTTGGAAGTATGCAC+TGG 0.537346 6_2:+76399206 Msa0929120:CDS
AACTCCATATGACGGATAGC+TGG 0.539302 6_2:-76400504 None:intergenic
TGGAGTTAGAAAAGGAATGA+TGG 0.547753 6_2:+76400520 Msa0929120:CDS
TGCTATTAGACAGATTGGAA+TGG 0.548483 6_2:+76399431 Msa0929120:CDS
ATGCCAAAGACTCGTCATCA+TGG 0.549394 6_2:-76396937 None:intergenic
TAAATGTTTCTGAGAATAGA+GGG 0.551447 6_2:+76400774 Msa0929120:CDS
GTGATGATGACCAAGATCAA+GGG 0.559984 6_2:+76399343 Msa0929120:CDS
ATCACTGGCTAATATACTCA+TGG 0.566664 6_2:+76396958 Msa0929120:CDS
CAAGAATAGATCAACAGAAG+TGG 0.568819 6_2:+76400685 Msa0929120:CDS
TGTCGCCAAGTTTCTTAACA+AGG 0.569859 6_2:+76400555 Msa0929120:CDS
CAAGAGAAAGGAATGGAAGG+AGG 0.573386 6_2:+76400272 Msa0929120:CDS
AAGAATAGATCAACAGAAGT+GGG 0.573718 6_2:+76400686 Msa0929120:CDS
CACAACCAAAACTTGCATGT+TGG 0.574671 6_2:-76396912 None:intergenic
GATTCATCTGCATAAATCAA+AGG 0.587541 6_2:+76400796 Msa0929120:CDS
TTGGAGTTGTTAAGAAACCA+AGG 0.591730 6_2:+76399370 Msa0929120:CDS
CTCGAAGAGTGACCAAAGCA+TGG 0.605583 6_2:-76398507 None:intergenic
TGCTCCATGTTCTAATGACA+TGG 0.612114 6_2:-76399142 None:intergenic
GGTGTGAAGAACTGGAGCGT+TGG 0.621741 6_2:+76400653 Msa0929120:CDS
TTCCAACTATACTATGATGT+CGG 0.631257 6_2:-76400604 None:intergenic
ATCTCCATGTCATTAGAACA+TGG 0.631773 6_2:+76399138 Msa0929120:CDS
TGATGATGACCAAGATCAAG+GGG 0.634597 6_2:+76399344 Msa0929120:CDS
TGGCTAATATACTCATGGCA+TGG 0.635039 6_2:+76396963 Msa0929120:CDS
GAATGTTCCAAACCTAACAA+GGG 0.643998 6_2:+76399680 Msa0929120:CDS
TAAGGCTGATTTCAACAATG+AGG 0.645850 6_2:+76400847 Msa0929120:CDS
CAGGAACTACGAATAAAGGA+AGG 0.649263 6_2:+76400711 Msa0929120:CDS
ATTAGACAGATTGGAATGGG+AGG 0.653232 6_2:+76399435 Msa0929120:CDS
CTCATGGCATGGCAATACAA+AGG 0.657436 6_2:+76396974 Msa0929120:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTAACAAAACATTTTA+GGG - chr6_2:76398080-76398099 None:intergenic 10.0%
!!! TATATTTAACAAAACATTTT+AGG - chr6_2:76398081-76398100 None:intergenic 10.0%
!! AAAACCAAATAAAAAAAATT+AGG - chr6_2:76398456-76398475 None:intergenic 10.0%
!! ATAAAAATAAAATAATTGCA+AGG - chr6_2:76398977-76398996 None:intergenic 10.0%
!!! AATAAATAGTTTATTTTTCT+TGG - chr6_2:76399235-76399254 None:intergenic 10.0%
!!! TATATAAAATGGAAAATTTT+AGG - chr6_2:76399924-76399943 None:intergenic 10.0%
!!! ACATATATTCTAAAAATATT+TGG - chr6_2:76400180-76400199 None:intergenic 10.0%
!! TTATATTTAATTAAGTAGTC+TGG - chr6_2:76397921-76397940 None:intergenic 15.0%
!! AAAACAAAGTTTAATATCAT+TGG + chr6_2:76398102-76398121 Msa0929120:intron 15.0%
!!! ATTATGAATAAACTTTTAAC+CGG + chr6_2:76398191-76398210 Msa0929120:intron 15.0%
!!! TTTTAACTTAAATTACTGAA+TGG - chr6_2:76398377-76398396 None:intergenic 15.0%
!!! ATGACCTAATTTTTTTTATT+TGG + chr6_2:76398449-76398468 Msa0929120:intron 15.0%
!! TGGATGAAATTTAATAAATA+AGG + chr6_2:76398813-76398832 Msa0929120:intron 15.0%
!! GGATGAAATTTAATAAATAA+GGG + chr6_2:76398814-76398833 Msa0929120:intron 15.0%
!!! AATAAATAAGGGTATAATAA+TGG + chr6_2:76398825-76398844 Msa0929120:intron 15.0%
!!! ATTAGTCTTCATAAAAAAAA+AGG - chr6_2:76399805-76399824 None:intergenic 15.0%
!!! ACTGTTTTAAATAATAAATG+AGG - chr6_2:76400009-76400028 None:intergenic 15.0%
!! AAAAATGAAAAAATTAGAGT+AGG - chr6_2:76400154-76400173 None:intergenic 15.0%
!! AAAGTAATTCAATTATCTGA+TGG - chr6_2:76397022-76397041 None:intergenic 20.0%
!! ATTAAAATACCACAATTGAA+AGG - chr6_2:76397233-76397252 None:intergenic 20.0%
!!! TACAAATACTTTGTTTGTAA+AGG + chr6_2:76397438-76397457 Msa0929120:intron 20.0%
!!! AATCATTCTTTGTTTTTGAA+GGG - chr6_2:76397475-76397494 None:intergenic 20.0%
!!! AAATCATTCTTTGTTTTTGA+AGG - chr6_2:76397476-76397495 None:intergenic 20.0%
!! TTATATGTATGAGTGAAAAT+GGG + chr6_2:76397765-76397784 Msa0929120:intron 20.0%
!!! TGGTATGTTAGTTTTTTTTT+AGG + chr6_2:76398122-76398141 Msa0929120:intron 20.0%
!!! GGTATGTTAGTTTTTTTTTA+GGG + chr6_2:76398123-76398142 Msa0929120:intron 20.0%
!!! GTATGTTAGTTTTTTTTTAG+GGG + chr6_2:76398124-76398143 Msa0929120:intron 20.0%
!! TTATATATTTCTTCCTTATC+AGG - chr6_2:76398298-76398317 None:intergenic 20.0%
!! GAAGAAATATATAACTCTTA+TGG + chr6_2:76398304-76398323 Msa0929120:intron 20.0%
!!! TTTCATATATTTGGAATGAA+TGG + chr6_2:76398565-76398584 Msa0929120:intron 20.0%
!! AAATGATATTTACCTATAAC+AGG - chr6_2:76398631-76398650 None:intergenic 20.0%
!!! ATTAATTGTGTTGATTTCAA+TGG + chr6_2:76398730-76398749 Msa0929120:intron 20.0%
!! CAAAATAATAAATGTTGCAT+TGG + chr6_2:76398851-76398870 Msa0929120:intron 20.0%
!!! TTAGTTAGCTTTCTATATAA+TGG - chr6_2:76399590-76399609 None:intergenic 20.0%
!!! AGACTAATGAAATTTTTTGA+AGG + chr6_2:76399817-76399836 Msa0929120:intron 20.0%
!! AGATATTCTAAATATTGTTG+AGG + chr6_2:76399841-76399860 Msa0929120:intron 20.0%
!! GTTATGGTGTATATATAAAA+TGG - chr6_2:76399935-76399954 None:intergenic 20.0%
!!! TTTAAGTTCAAAATTTGCAT+CGG + chr6_2:76400310-76400329 Msa0929120:CDS 20.0%
!! TTAACAAGGAACTTAAAATT+TGG + chr6_2:76400569-76400588 Msa0929120:CDS 20.0%
! AAACAGTAGAATACATTGTT+TGG - chr6_2:76397118-76397137 None:intergenic 25.0%
! ATTAATTATCAGAAGCCAAA+GGG - chr6_2:76397269-76397288 None:intergenic 25.0%
! AACCAATCCTTAAAATAAAG+GGG - chr6_2:76397510-76397529 None:intergenic 25.0%
! GAACCAATCCTTAAAATAAA+GGG - chr6_2:76397511-76397530 None:intergenic 25.0%
! TGAACCAATCCTTAAAATAA+AGG - chr6_2:76397512-76397531 None:intergenic 25.0%
! CTTATATGTATGAGTGAAAA+TGG + chr6_2:76397764-76397783 Msa0929120:intron 25.0%
!! TTTTCCATTTTAAACTGAGA+AGG + chr6_2:76397847-76397866 Msa0929120:intron 25.0%
! TGAATCAAATTAACCTGATA+AGG + chr6_2:76398282-76398301 Msa0929120:intron 25.0%
! AATATTAATGCACACTCAAT+AGG + chr6_2:76398340-76398359 Msa0929120:intron 25.0%
! ATCAGTGAGTTTCATATATT+TGG + chr6_2:76398556-76398575 Msa0929120:intron 25.0%
!!! AGAGTATTTTTTAGTTGGAA+GGG - chr6_2:76398656-76398675 None:intergenic 25.0%
!!! TAGAGAGAGTATTTTTTAGT+TGG - chr6_2:76398661-76398680 None:intergenic 25.0%
! CTCTAAATTATAGTCGTTTA+AGG + chr6_2:76398682-76398701 Msa0929120:intron 25.0%
! CCACTAACTACAATTAATAA+GGG - chr6_2:76398782-76398801 None:intergenic 25.0%
! TCCACTAACTACAATTAATA+AGG - chr6_2:76398783-76398802 None:intergenic 25.0%
!! CATCACTATTTGAAACAAAA+AGG - chr6_2:76399094-76399113 None:intergenic 25.0%
! ATCTGAAAGAGAGAAAAAAA+AGG - chr6_2:76399631-76399650 None:intergenic 25.0%
!! ATTATCTCCAAGATTTTCTT+TGG - chr6_2:76399660-76399679 None:intergenic 25.0%
! AAAAAAAACCTGTAAATGAC+TGG - chr6_2:76399715-76399734 None:intergenic 25.0%
! TACAAAAATAAACGGATAAC+AGG - chr6_2:76399957-76399976 None:intergenic 25.0%
! GTATGCAAAGAATATTATGT+TGG + chr6_2:76400029-76400048 Msa0929120:intron 25.0%
!! ATGAAATTGGTAACTGAATT+TGG - chr6_2:76400126-76400145 None:intergenic 25.0%
! AGAGTAGGAAAAAATGAAAT+TGG - chr6_2:76400139-76400158 None:intergenic 25.0%
!! ATTTCATTGATGACAGAAAT+TGG - chr6_2:76400341-76400360 None:intergenic 25.0%
! TCGTTCAATCATTTCAATTA+TGG + chr6_2:76400632-76400651 Msa0929120:CDS 25.0%
! AATGTTATTCCATATAGCTT+TGG + chr6_2:76400740-76400759 Msa0929120:CDS 25.0%
! ATGTTATTCCATATAGCTTT+GGG + chr6_2:76400741-76400760 Msa0929120:CDS 25.0%
!! TAAATGTTTCTGAGAATAGA+GGG + chr6_2:76400774-76400793 Msa0929120:CDS 25.0%
CTGATGGTTAAATAGAAAAG+AGG - chr6_2:76397006-76397025 None:intergenic 30.0%
! AAAGTTTTGCCTTTCAATTG+TGG + chr6_2:76397221-76397240 Msa0929120:intron 30.0%
ATTGTTAGATATCAACCCTT+TGG + chr6_2:76397251-76397270 Msa0929120:intron 30.0%
GATTAATTATCAGAAGCCAA+AGG - chr6_2:76397270-76397289 None:intergenic 30.0%
! ATCTTGGCTAAAGCAAATTT+TGG - chr6_2:76397329-76397348 None:intergenic 30.0%
! AATTTGCTTTAGCCAAGATT+TGG + chr6_2:76397330-76397349 Msa0929120:intron 30.0%
ACCAATCCTTAAAATAAAGG+GGG - chr6_2:76397509-76397528 None:intergenic 30.0%
AGACAATCAAAAGGGAAAAA+AGG - chr6_2:76397731-76397750 None:intergenic 30.0%
!! AAGTGTTGAGACAATCAAAA+GGG - chr6_2:76397739-76397758 None:intergenic 30.0%
!! AAAGTGTTGAGACAATCAAA+AGG - chr6_2:76397740-76397759 None:intergenic 30.0%
! TTAGCCTTCTCAGTTTAAAA+TGG - chr6_2:76397854-76397873 None:intergenic 30.0%
! TAATTAAGTAGTCTGGTTTG+TGG - chr6_2:76397914-76397933 None:intergenic 30.0%
!!! TGTTAGTTTTTTTTTAGGGG+AGG + chr6_2:76398127-76398146 Msa0929120:intron 30.0%
!!! GTTAGTTTTTTTTTAGGGGA+GGG + chr6_2:76398128-76398147 Msa0929120:intron 30.0%
!!! TTAGTTTTTTTTTAGGGGAG+GGG + chr6_2:76398129-76398148 Msa0929120:intron 30.0%
! AGAATAAGTTGAGCAAAGTT+AGG - chr6_2:76398239-76398258 None:intergenic 30.0%
! TATTCTCAAACAGGAGTTTT+AGG + chr6_2:76398253-76398272 Msa0929120:intron 30.0%
!! ACTCATCTTGAATTTGCTTT+TGG - chr6_2:76398600-76398619 None:intergenic 30.0%
!!! GAGTATTTTTTAGTTGGAAG+GGG - chr6_2:76398655-76398674 None:intergenic 30.0%
!!! GAGAGTATTTTTTAGTTGGA+AGG - chr6_2:76398657-76398676 None:intergenic 30.0%
CCCTTATTAATTGTAGTTAG+TGG + chr6_2:76398779-76398798 Msa0929120:intron 30.0%
TTGTATGCTATTAGACAGAT+TGG + chr6_2:76399426-76399445 Msa0929120:CDS 30.0%
AAATGTATCCAGTCATTTAC+AGG + chr6_2:76399704-76399723 Msa0929120:CDS 30.0%
AATAAACGGATAACAGGTTA+TGG - chr6_2:76399951-76399970 None:intergenic 30.0%
! TTTTCGCTTGAAAAAGTGAA+AGG - chr6_2:76400397-76400416 None:intergenic 30.0%
TAGAAGCGACATCATAAAAT+GGG - chr6_2:76400484-76400503 None:intergenic 30.0%
AAGTTCCTTGTTAAGAAACT+TGG - chr6_2:76400563-76400582 None:intergenic 30.0%
TTCCAACTATACTATGATGT+CGG - chr6_2:76400607-76400626 None:intergenic 30.0%
AAGAATAGATCAACAGAAGT+GGG + chr6_2:76400686-76400705 Msa0929120:CDS 30.0%
! GTAAATGTTTCTGAGAATAG+AGG + chr6_2:76400773-76400792 Msa0929120:CDS 30.0%
GATTCATCTGCATAAATCAA+AGG + chr6_2:76400796-76400815 Msa0929120:CDS 30.0%
! ATCACTGGCTAATATACTCA+TGG + chr6_2:76396958-76396977 Msa0929120:CDS 35.0%
AGATTTGCAATGCATACACA+AGG - chr6_2:76397151-76397170 None:intergenic 35.0%
AGACACTAGATTCCAAATCT+TGG - chr6_2:76397345-76397364 None:intergenic 35.0%
!!! TCCCCCTTTATTTTAAGGAT+TGG + chr6_2:76397505-76397524 Msa0929120:intron 35.0%
!!! ATTTTAAGGATTGGTTCACG+TGG + chr6_2:76397514-76397533 Msa0929120:intron 35.0%
CTACATTGTAGGATTCTCAA+GGG - chr6_2:76397799-76397818 None:intergenic 35.0%
!!! TAGTTTTTTTTTAGGGGAGG+GGG + chr6_2:76398130-76398149 Msa0929120:intron 35.0%
! CTTTTAACCGGACTATACTT+AGG + chr6_2:76398203-76398222 Msa0929120:intron 35.0%
TGCTCAACTTATTCTCAAAC+AGG + chr6_2:76398244-76398263 Msa0929120:intron 35.0%
GAGTTTCAACTACCTGTTAT+AGG + chr6_2:76398616-76398635 Msa0929120:intron 35.0%
AGTTAGTGGAGTAGTTAAGT+TGG + chr6_2:76398793-76398812 Msa0929120:intron 35.0%
AGACAATTATTGTGAGACGT+AGG + chr6_2:76398920-76398939 Msa0929120:intron 35.0%
GACAATTATTGTGAGACGTA+GGG + chr6_2:76398921-76398940 Msa0929120:intron 35.0%
AATGACATGGAGATTATGTC+TGG - chr6_2:76399132-76399151 None:intergenic 35.0%
ATCTCCATGTCATTAGAACA+TGG + chr6_2:76399138-76399157 Msa0929120:CDS 35.0%
TATAGCAAGTGAAGAAGAAG+AGG + chr6_2:76399266-76399285 Msa0929120:intron 35.0%
TTGGAGTTGTTAAGAAACCA+AGG + chr6_2:76399370-76399389 Msa0929120:CDS 35.0%
! TTAAGAAACCAAGGCTTGTT+TGG + chr6_2:76399379-76399398 Msa0929120:CDS 35.0%
TTATTAGTCCAAACAAGCCT+TGG - chr6_2:76399390-76399409 None:intergenic 35.0%
TGCTATTAGACAGATTGGAA+TGG + chr6_2:76399431-76399450 Msa0929120:CDS 35.0%
GCTATTAGACAGATTGGAAT+GGG + chr6_2:76399432-76399451 Msa0929120:CDS 35.0%
TGTTGTGCCAAAGAAAATCT+TGG + chr6_2:76399650-76399669 Msa0929120:CDS 35.0%
TGAATGTTCCAAACCTAACA+AGG + chr6_2:76399679-76399698 Msa0929120:CDS 35.0%
GAATGTTCCAAACCTAACAA+GGG + chr6_2:76399680-76399699 Msa0929120:CDS 35.0%
! ACATTTTCCCTTGTTAGGTT+TGG - chr6_2:76399690-76399709 None:intergenic 35.0%
! TGGATACATTTTCCCTTGTT+AGG - chr6_2:76399695-76399714 None:intergenic 35.0%
!! GAATATTATGTTGGTTCGAG+TGG + chr6_2:76400038-76400057 Msa0929120:intron 35.0%
CTGAAAGATGTACAAGAGAA+AGG + chr6_2:76400260-76400279 Msa0929120:CDS 35.0%
AGATGTACAAGAGAAAGGAA+TGG + chr6_2:76400265-76400284 Msa0929120:CDS 35.0%
GCGAAAAACTCTTTCAATGA+TGG + chr6_2:76400410-76400429 Msa0929120:CDS 35.0%
! TTTTCGCTTGAAAAGGTGAA+AGG - chr6_2:76400460-76400479 None:intergenic 35.0%
!! AATGGGTTTTTCGCTTGAAA+AGG - chr6_2:76400467-76400486 None:intergenic 35.0%
GTAGAAGCGACATCATAAAA+TGG - chr6_2:76400485-76400504 None:intergenic 35.0%
! CCTTTTCTAACTCCATATGA+CGG - chr6_2:76400515-76400534 None:intergenic 35.0%
TGGAGTTAGAAAAGGAATGA+TGG + chr6_2:76400520-76400539 Msa0929120:CDS 35.0%
TACCGACATCATAGTATAGT+TGG + chr6_2:76400602-76400621 Msa0929120:CDS 35.0%
TCAATTATGGTGTGAAGAAC+TGG + chr6_2:76400645-76400664 Msa0929120:CDS 35.0%
CAAGAATAGATCAACAGAAG+TGG + chr6_2:76400685-76400704 Msa0929120:CDS 35.0%
CCATTAAACCCAAAGCTATA+TGG - chr6_2:76400752-76400771 None:intergenic 35.0%
!! CCATATAGCTTTGGGTTTAA+TGG + chr6_2:76400749-76400768 Msa0929120:CDS 35.0%
!! GTTGAAATCAGCCTTATTGA+CGG - chr6_2:76400843-76400862 None:intergenic 35.0%
! TAAGGCTGATTTCAACAATG+AGG + chr6_2:76400847-76400866 Msa0929120:CDS 35.0%
! CAGATCCAACATGCAAGTTT+TGG + chr6_2:76396907-76396926 Msa0929120:CDS 40.0%
CACAACCAAAACTTGCATGT+TGG - chr6_2:76396915-76396934 None:intergenic 40.0%
!!! CAACATGCAAGTTTTGGTTG+TGG + chr6_2:76396913-76396932 Msa0929120:CDS 40.0%
TGGCTAATATACTCATGGCA+TGG + chr6_2:76396963-76396982 Msa0929120:CDS 40.0%
TAATCCAGAATCTAGCTGAG+AGG + chr6_2:76397285-76397304 Msa0929120:intron 40.0%
!!! TGCGATCCCCCTTTATTTTA+AGG + chr6_2:76397500-76397519 Msa0929120:intron 40.0%
TGACACAATTCAAAGACTCG+AGG - chr6_2:76397668-76397687 None:intergenic 40.0%
GCTACATTGTAGGATTCTCA+AGG - chr6_2:76397800-76397819 None:intergenic 40.0%
AGAATCCTACAATGTAGCCT+AGG + chr6_2:76397802-76397821 Msa0929120:intron 40.0%
AACTTGATCTGATCTGACCT+AGG - chr6_2:76397822-76397841 None:intergenic 40.0%
!!! AGTTTTTTTTTAGGGGAGGG+GGG + chr6_2:76398131-76398150 Msa0929120:intron 40.0%
CACAATGCCTAAGTATAGTC+CGG - chr6_2:76398213-76398232 None:intergenic 40.0%
! ATTTTCAGTTCGAACTGCCA+AGG + chr6_2:76398477-76398496 Msa0929120:intron 40.0%
TGCTCCATGTTCTAATGACA+TGG - chr6_2:76399145-76399164 None:intergenic 40.0%
CTGAAGTCTTCAGCACAAAA+TGG - chr6_2:76399186-76399205 None:intergenic 40.0%
CTGAAGACTTCAGAGACATT+TGG + chr6_2:76399193-76399212 Msa0929120:CDS 40.0%
! AGACATTTGGAAGTATGCAC+TGG + chr6_2:76399206-76399225 Msa0929120:CDS 40.0%
! TGTGATGATGACCAAGATCA+AGG + chr6_2:76399342-76399361 Msa0929120:CDS 40.0%
! GTGATGATGACCAAGATCAA+GGG + chr6_2:76399343-76399362 Msa0929120:CDS 40.0%
! TGATGATGACCAAGATCAAG+GGG + chr6_2:76399344-76399363 Msa0929120:CDS 40.0%
ATTAGACAGATTGGAATGGG+AGG + chr6_2:76399435-76399454 Msa0929120:CDS 40.0%
GTACAAGAGAAAGGAATGGA+AGG + chr6_2:76400269-76400288 Msa0929120:CDS 40.0%
CCGTCATATGGAGTTAGAAA+AGG + chr6_2:76400512-76400531 Msa0929120:CDS 40.0%
TGTCGCCAAGTTTCTTAACA+AGG + chr6_2:76400555-76400574 Msa0929120:CDS 40.0%
GGAACAGGAACTACGAATAA+AGG + chr6_2:76400707-76400726 Msa0929120:CDS 40.0%
CAGGAACTACGAATAAAGGA+AGG + chr6_2:76400711-76400730 Msa0929120:CDS 40.0%
! GAATGCTACTTCCGTCAATA+AGG + chr6_2:76400829-76400848 Msa0929120:CDS 40.0%
ATGCCAAAGACTCGTCATCA+TGG - chr6_2:76396940-76396959 None:intergenic 45.0%
CTCATGGCATGGCAATACAA+AGG + chr6_2:76396974-76396993 Msa0929120:CDS 45.0%
TCAACCTCTCAGCTAGATTC+TGG - chr6_2:76397292-76397311 None:intergenic 45.0%
!!! AGGATTGGTTCACGTGGTTT+TGG + chr6_2:76397520-76397539 Msa0929120:intron 45.0%
TCTGACCTAGGCTACATTGT+AGG - chr6_2:76397810-76397829 None:intergenic 45.0%
! TAAGTAGTCTGGTTTGTGGC+AGG - chr6_2:76397910-76397929 None:intergenic 45.0%
!!! GTTTTTTTTTAGGGGAGGGG+GGG + chr6_2:76398132-76398151 Msa0929120:intron 45.0%
CAAGAGAAAGGAATGGAAGG+AGG + chr6_2:76400272-76400291 Msa0929120:CDS 45.0%
TCTACCAGCTATCCGTCATA+TGG + chr6_2:76400500-76400519 Msa0929120:CDS 45.0%
!! AACTCCATATGACGGATAGC+TGG - chr6_2:76400507-76400526 None:intergenic 45.0%
AGATCAACAGAAGTGGGAAC+AGG + chr6_2:76400692-76400711 Msa0929120:CDS 45.0%
!!! TTTTTTTTTAAAGTTTATTT+AGG + chr6_2:76397876-76397895 Msa0929120:intron 5.0%
!!! TAAAATATTCAATATTTTAA+TGG + chr6_2:76398392-76398411 Msa0929120:intron 5.0%
!! ATATATTATACAAAAATAAA+CGG - chr6_2:76399965-76399984 None:intergenic 5.0%
! GGACCATGATGACGAGTCTT+TGG + chr6_2:76396934-76396953 Msa0929120:CDS 50.0%
TGACGAGTCTTTGGCATCAC+TGG + chr6_2:76396943-76396962 Msa0929120:CDS 50.0%
CAAAGCATGGTGAGCATCCT+TGG - chr6_2:76398497-76398516 None:intergenic 50.0%
CAAGGATGCTCACCATGCTT+TGG + chr6_2:76398495-76398514 Msa0929120:CDS 50.0%
CTCGAAGAGTGACCAAAGCA+TGG - chr6_2:76398510-76398529 None:intergenic 50.0%
GACCAAGATCAAGGGGAGTT+TGG + chr6_2:76399351-76399370 Msa0929120:CDS 50.0%
CTCCAAACTCCCCTTGATCT+TGG - chr6_2:76399356-76399375 None:intergenic 50.0%
GACAGATTGGAATGGGAGGT+AGG + chr6_2:76399439-76399458 Msa0929120:intron 50.0%
GGTGTGAAGAACTGGAGCGT+TGG + chr6_2:76400653-76400672 Msa0929120:CDS 55.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 76396896 76400916 76396896 ID=Msa0929120;Name=Msa0929120
chr6_2 mRNA 76396896 76400916 76396896 ID=Msa0929120-mRNA-1;Parent=Msa0929120;Name=Msa0929120-mRNA-1;_AED=0.12;_eAED=0.14;_QI=0|0|0|1|0.8|0.83|6|0|419
chr6_2 exon 76396896 76396995 76396896 ID=Msa0929120-mRNA-1:exon:12877;Parent=Msa0929120-mRNA-1
chr6_2 exon 76398485 76398559 76398485 ID=Msa0929120-mRNA-1:exon:12878;Parent=Msa0929120-mRNA-1
chr6_2 exon 76399109 76399258 76399109 ID=Msa0929120-mRNA-1:exon:12879;Parent=Msa0929120-mRNA-1
chr6_2 exon 76399271 76399456 76399271 ID=Msa0929120-mRNA-1:exon:12880;Parent=Msa0929120-mRNA-1
chr6_2 exon 76399649 76399725 76399649 ID=Msa0929120-mRNA-1:exon:12881;Parent=Msa0929120-mRNA-1
chr6_2 exon 76400245 76400916 76400245 ID=Msa0929120-mRNA-1:exon:12882;Parent=Msa0929120-mRNA-1
chr6_2 CDS 76396896 76396995 76396896 ID=Msa0929120-mRNA-1:cds;Parent=Msa0929120-mRNA-1
chr6_2 CDS 76398485 76398559 76398485 ID=Msa0929120-mRNA-1:cds;Parent=Msa0929120-mRNA-1
chr6_2 CDS 76399109 76399258 76399109 ID=Msa0929120-mRNA-1:cds;Parent=Msa0929120-mRNA-1
chr6_2 CDS 76399271 76399456 76399271 ID=Msa0929120-mRNA-1:cds;Parent=Msa0929120-mRNA-1
chr6_2 CDS 76399649 76399725 76399649 ID=Msa0929120-mRNA-1:cds;Parent=Msa0929120-mRNA-1
chr6_2 CDS 76400245 76400916 76400245 ID=Msa0929120-mRNA-1:cds;Parent=Msa0929120-mRNA-1
Gene Sequence

>Msa0929120

ATGAGTTACGACAGATCCAACATGCAAGTTTTGGTTGTGGACCATGATGACGAGTCTTTGGCATCACTGGCTAATATACTCATGGCATGGCAATACAAAGTTCGAACTGCCAAGGATGCTCACCATGCTTTGGTCACTCTTCGAGACTCTCAAGTCTTGTTTGATCTCATAATCATGATGTCTAAAGATAATAGACCAGACATAATCTCCATGTCATTAGAACATGGAGCAGCACAATATATTGTTAAACCATTTTGTGCTGAAGACTTCAGAGACATTTGGAAGTATGCACTGGAAGCCAAGAAAAATAAACTATTTATTGATACAAGTGAAGAAGAAGAGGAGACATCAACTGATCAATTACAAACTAAAAAGAATTGTAGTAAAAGAAAGAGTTGTGATGATGACCAAGATCAAGGGGAGTTTGGAGTTGTTAAGAAACCAAGGCTTGTTTGGACTAATAATCTTCACAGTCGATTTTTGTATGCTATTAGACAGATTGGAATGGGAGATGTTGTGCCAAAGAAAATCTTGGAGATAATGAATGTTCCAAACCTAACAAGGGAAAATGTATCCAGTCATTTACAGAAGCATCGCATGTTTCTGAAAGATGTACAAGAGAAAGGAATGGAAGGAGGAGTTTCTCAGAGAGCTTTAAGTTCAAAATTTGCATCGGATCTTCCAATTTCTGTCATCAATGAAATCATTGAAAGAAGAAAAAACAGTCGATATTCAAACCTTTCACTTTTTCAAGCGAAAAACTCTTTCAATGATGGTGCTTCTACTAGCAATTCATCAAACCTTTCACCTTTTCAAGCGAAAAACCCATTTTATGATGTCGCTTCTACCAGCTATCCGTCATATGGAGTTAGAAAAGGAATGATGGCTTCTTCTTCTTTGTCGCCAAGTTTCTTAACAAGGAACTTAAAATTTGGTGATACTAGTTACCGACATCATAGTATAGTTGGAAATGATTCGTTCAATCATTTCAATTATGGTGTGAAGAACTGGAGCGTTGGATCTACAATCAAGAATAGATCAACAGAAGTGGGAACAGGAACTACGAATAAAGGAAGGTTTGATAATGTTATTCCATATAGCTTTGGGTTTAATGGAGTAAATGTTTCTGAGAATAGAGGGATTCATCTGCATAAATCAAAGGCTGCTGTTGAGAATGCTACTTCCGTCAATAAGGCTGATTTCAACAATGAGGTATGCAAACATGAATCTTTTAAAACAATCCACAATAATTTTCTATAA

Protein sequence

>Msa0929120

MSYDRSNMQVLVVDHDDESLASLANILMAWQYKVRTAKDAHHALVTLRDSQVLFDLIIMMSKDNRPDIISMSLEHGAAQYIVKPFCAEDFRDIWKYALEAKKNKLFIDTSEEEEETSTDQLQTKKNCSKRKSCDDDQDQGEFGVVKKPRLVWTNNLHSRFLYAIRQIGMGDVVPKKILEIMNVPNLTRENVSSHLQKHRMFLKDVQEKGMEGGVSQRALSSKFASDLPISVINEIIERRKNSRYSNLSLFQAKNSFNDGASTSNSSNLSPFQAKNPFYDVASTSYPSYGVRKGMMASSSLSPSFLTRNLKFGDTSYRHHSIVGNDSFNHFNYGVKNWSVGSTIKNRSTEVGTGTTNKGRFDNVIPYSFGFNGVNVSENRGIHLHKSKAAVENATSVNKADFNNEVCKHESFKTIHNNFL*