Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0929580 | RHN51853.1 | 32.184 | 174 | 69 | 2 | 9 | 182 | 9 | 133 | 3.69e-16 | 93.2 |
| Msa0929580 | RHN51853.1 | 37.423 | 163 | 89 | 1 | 34 | 183 | 222 | 384 | 4.65e-20 | 105 |
| Msa0929580 | RHN51853.1 | 43.682 | 277 | 142 | 2 | 203 | 466 | 225 | 500 | 1.27e-74 | 253 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0929580 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0929580 | MtrunA17_Chr6g0473661 | 43.682 | 277 | 142 | 2 | 203 | 466 | 225 | 500 | 1.17e-78 | 253 |
| Msa0929580 | MtrunA17_Chr6g0473661 | 37.423 | 163 | 89 | 1 | 34 | 183 | 222 | 384 | 4.27e-24 | 105 |
| Msa0929580 | MtrunA17_Chr6g0473661 | 32.184 | 174 | 69 | 2 | 9 | 182 | 9 | 133 | 3.40e-20 | 93.2 |
| Msa0929580 | MtrunA17_Chr6g0473651 | 49.640 | 139 | 69 | 1 | 212 | 350 | 216 | 353 | 1.47e-36 | 139 |
| Msa0929580 | MtrunA17_Chr6g0473651 | 44.531 | 128 | 71 | 0 | 56 | 183 | 226 | 353 | 2.04e-24 | 104 |
| Msa0929580 | MtrunA17_Chr6g0473651 | 31.214 | 173 | 108 | 3 | 279 | 443 | 23 | 192 | 3.18e-23 | 101 |
| Msa0929580 | MtrunA17_Chr6g0473651 | 47.887 | 71 | 37 | 0 | 112 | 182 | 22 | 92 | 8.05e-13 | 70.1 |
| Msa0929580 | MtrunA17_Chr6g0473921 | 36.957 | 138 | 87 | 0 | 328 | 465 | 1 | 138 | 8.28e-32 | 119 |
| Msa0929580 | MtrunA17_Chr1g0156191 | 37.500 | 136 | 84 | 1 | 294 | 429 | 1 | 135 | 1.55e-27 | 107 |
| Msa0929580 | MtrunA17_Chr1g0206471 | 29.767 | 215 | 139 | 2 | 207 | 410 | 38 | 251 | 1.38e-26 | 108 |
| Msa0929580 | MtrunA17_Chr1g0206471 | 29.139 | 151 | 95 | 1 | 43 | 181 | 40 | 190 | 1.33e-17 | 82.8 |
| Msa0929580 | MtrunA17_Chr7g0270401 | 27.711 | 249 | 163 | 5 | 195 | 429 | 24 | 269 | 2.77e-24 | 102 |
| Msa0929580 | MtrunA17_Chr7g0270401 | 27.273 | 154 | 100 | 1 | 43 | 184 | 39 | 192 | 2.60e-16 | 79.0 |
| Msa0929580 | MtrunA17_Chr6g0462511 | 35.398 | 113 | 72 | 1 | 319 | 430 | 2 | 114 | 1.68e-20 | 87.0 |
| Msa0929580 | MtrunA17_Chr1g0193281 | 31.298 | 131 | 90 | 0 | 43 | 173 | 39 | 169 | 6.62e-16 | 76.3 |
| Msa0929580 | MtrunA17_Chr1g0193281 | 31.250 | 128 | 83 | 2 | 187 | 310 | 14 | 140 | 4.84e-11 | 62.0 |
| Msa0929580 | MtrunA17_Chr1g0207921 | 40.000 | 80 | 46 | 1 | 43 | 120 | 36 | 115 | 8.22e-13 | 67.4 |
| Msa0929580 | MtrunA17_Chr4g0054601 | 41.892 | 74 | 43 | 0 | 234 | 307 | 1 | 74 | 3.44e-12 | 63.2 |
| Msa0929580 | MtrunA17_Chr7g0228461 | 31.667 | 120 | 78 | 2 | 58 | 176 | 2 | 118 | 2.71e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 117 sgRNAs with CRISPR-Local
Find 251 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTCTGTGGCAAGGATTTC+TGG | 0.139608 | 6_2:-77707899 | None:intergenic |
| AAACTGGACCGTCGTGATTT+TGG | 0.142859 | 6_2:+77706199 | Msa0929580:CDS |
| CAATCCAGCCTTGTTTCTTA+TGG | 0.243933 | 6_2:-77707616 | None:intergenic |
| CGGTCCAGTTTGGATATTAT+TGG | 0.264347 | 6_2:-77706187 | None:intergenic |
| ATCCATGGGTGCAGTGTATT+GGG | 0.290852 | 6_2:-77708124 | None:intergenic |
| CTCATCATTGCCATCTCACT+TGG | 0.320277 | 6_2:-77705753 | None:intergenic |
| CCGAGGTTCATTACTTCATC+AGG | 0.337428 | 6_2:+77707678 | Msa0929580:CDS |
| GATATATCGGATAATGGATA+TGG | 0.364913 | 6_2:-77707645 | None:intergenic |
| CCTACCACACTTACGATTGT+TGG | 0.366401 | 6_2:+77707921 | Msa0929580:CDS |
| ACCTCTGCGATGTGCAAATC+AGG | 0.368835 | 6_2:-77708028 | None:intergenic |
| ATCGTCAAGGTCATAAGATT+TGG | 0.374229 | 6_2:-77706118 | None:intergenic |
| ACATCGCAGAGGTTGGTTGC+AGG | 0.375369 | 6_2:+77708038 | Msa0929580:CDS |
| ACAACAATGATATTGTTGTT+TGG | 0.386359 | 6_2:-77707465 | None:intergenic |
| ACCTCAATCTCATTGTTCAT+TGG | 0.386489 | 6_2:-77705986 | None:intergenic |
| GATATTTATAACATTGTAGA+TGG | 0.391221 | 6_2:+77707546 | Msa0929580:CDS |
| GACTTCGTCTGATGTCCTCT+CGG | 0.399084 | 6_2:+77707746 | Msa0929580:CDS |
| TATCCATGGGTGCAGTGTAT+TGG | 0.399336 | 6_2:-77708125 | None:intergenic |
| ACTTCAGACAAGGCTGGTCT+AGG | 0.399428 | 6_2:+77707517 | Msa0929580:CDS |
| GCAAGGGATATATCGGATAA+TGG | 0.403725 | 6_2:-77707651 | None:intergenic |
| AAAATCACGACGGTCCAGTT+TGG | 0.405460 | 6_2:-77706197 | None:intergenic |
| ATGCTATGATTGGTGGTGAT+TGG | 0.409098 | 6_2:+77708003 | Msa0929580:CDS |
| TACTCCAATAATATCCAAAC+TGG | 0.412151 | 6_2:+77706183 | Msa0929580:CDS |
| GGATGTTAACTCAGGATGTT+TGG | 0.412783 | 6_2:+77706273 | Msa0929580:CDS |
| CATAAGAAACAAGGCTGGAT+TGG | 0.419848 | 6_2:+77707617 | Msa0929580:CDS |
| AACCAGACTTTGCCGTGGTA+TGG | 0.440028 | 6_2:+77707870 | Msa0929580:intron |
| CACTATTGAATTGACTTACT+CGG | 0.440432 | 6_2:+77706252 | Msa0929580:CDS |
| AAACCTATGGTCAGCGGCAG+TGG | 0.455398 | 6_2:+77708155 | Msa0929580:CDS |
| CGGCAACGCAAGGGATATAT+CGG | 0.461190 | 6_2:-77707658 | None:intergenic |
| CAGACATAGTGTCAAATTCA+AGG | 0.463743 | 6_2:-77705785 | None:intergenic |
| GACAAAGATAACACAGTCCT+TGG | 0.465488 | 6_2:+77708089 | Msa0929580:CDS |
| TCATCATTGCCATCTCACTT+GGG | 0.476104 | 6_2:-77705752 | None:intergenic |
| CTGTGCGAAGGGACCTGTCT+CGG | 0.479542 | 6_2:+77706860 | Msa0929580:CDS |
| TAGGTTTCACATAGTATCCA+TGG | 0.490660 | 6_2:-77708139 | None:intergenic |
| ATGGTCATGAGTAGTAGATT+AGG | 0.500878 | 6_2:-77707597 | None:intergenic |
| TGGGTCTATCTGAAATATGC+GGG | 0.502250 | 6_2:+77707573 | Msa0929580:CDS |
| TTGGTCCGAACGGCTGTACA+TGG | 0.502745 | 6_2:+77707940 | Msa0929580:CDS |
| CATCTCACCATGTCTGACTT+AGG | 0.502842 | 6_2:+77704875 | None:intergenic |
| GAAGGGACCTGTCTCGGTTG+AGG | 0.505460 | 6_2:+77706866 | Msa0929580:CDS |
| GACTTCTACAACATTGAGCT+TGG | 0.507615 | 6_2:+77706067 | Msa0929580:CDS |
| TCACCACCAATCATAGCATA+AGG | 0.511917 | 6_2:-77707999 | None:intergenic |
| ACTTCGTCTGATGTCCTCTC+GGG | 0.511997 | 6_2:+77707747 | Msa0929580:CDS |
| CATCTCCATGTACAGCCGTT+CGG | 0.512529 | 6_2:-77707945 | None:intergenic |
| GAGTATGCTGGAACAGATGT+CGG | 0.514049 | 6_2:+77708226 | Msa0929580:CDS |
| AATATGCCTTATGCTATGAT+TGG | 0.515256 | 6_2:+77707993 | Msa0929580:CDS |
| TCCAATGAACAATGAGATTG+AGG | 0.518221 | 6_2:+77705985 | Msa0929580:CDS |
| AGCTTTATATGAGGAAAGGT+TGG | 0.518511 | 6_2:+77706032 | Msa0929580:CDS |
| GATAAGTCCTCAACCGAGAC+AGG | 0.525131 | 6_2:-77706873 | None:intergenic |
| CGACCACTGCCGCTGACCAT+AGG | 0.527761 | 6_2:-77708158 | None:intergenic |
| ACCCCAATACACTGCACCCA+TGG | 0.533195 | 6_2:+77708122 | Msa0929580:CDS |
| TGCACAAGGAATGCTGTCAT+TGG | 0.536531 | 6_2:+77704931 | Msa0929580:CDS |
| CAGTGGTCGATATGTGTACC+AGG | 0.539166 | 6_2:+77708172 | Msa0929580:CDS |
| ATTATTGGAGTAGTGTGAGC+AGG | 0.541688 | 6_2:-77706172 | None:intergenic |
| TAATGAACCTCGGCAACGCA+AGG | 0.541750 | 6_2:-77707668 | None:intergenic |
| TGATGTCCTCTCGGGCACTT+TGG | 0.543138 | 6_2:+77707755 | Msa0929580:CDS |
| TTGCAAGGCGAAGAGTATGC+TGG | 0.545573 | 6_2:+77708214 | Msa0929580:CDS |
| ATAACATTGTAGATGGTGCA+TGG | 0.547247 | 6_2:+77707553 | Msa0929580:CDS |
| CGAGGTTCATTACTTCATCA+GGG | 0.547766 | 6_2:+77707679 | Msa0929580:CDS |
| TCACCATGTCTGACTTAGGT+GGG | 0.551890 | 6_2:+77704879 | None:intergenic |
| CATATTATTTGCAACAGCGA+AGG | 0.553325 | 6_2:-77707976 | None:intergenic |
| CTTCAGACAAGGCTGGTCTA+GGG | 0.553757 | 6_2:+77707518 | Msa0929580:CDS |
| CAAGGAATGCTGTCATTGGC+AGG | 0.555729 | 6_2:+77704935 | Msa0929580:CDS |
| AGTATGCTGGAACAGATGTC+GGG | 0.557360 | 6_2:+77708227 | Msa0929580:CDS |
| CTTACGATTGTTGGTCCGAA+CGG | 0.558198 | 6_2:+77707930 | Msa0929580:CDS |
| TATATGAGGAAAGGTTGGTA+TGG | 0.559929 | 6_2:+77706037 | Msa0929580:CDS |
| GATTTGCACATCGCAGAGGT+TGG | 0.560790 | 6_2:+77708031 | Msa0929580:CDS |
| GGACTGTGTTATCTTTGTCA+TGG | 0.561082 | 6_2:-77708085 | None:intergenic |
| TGGATACTATGTGAAACCTA+TGG | 0.563204 | 6_2:+77708142 | Msa0929580:CDS |
| TGCAGTGTATTGGGGTATGT+CGG | 0.565836 | 6_2:-77708115 | None:intergenic |
| ATATATCCCTTGCGTTGCCG+AGG | 0.568869 | 6_2:+77707661 | Msa0929580:CDS |
| TGTGGTAGGTTTCTGTGGCA+AGG | 0.569531 | 6_2:-77707907 | None:intergenic |
| GACAAGCTTTATATGAGGAA+AGG | 0.570103 | 6_2:+77706028 | Msa0929580:CDS |
| ATCTCACTTGGGGTATACGT+TGG | 0.570410 | 6_2:-77705741 | None:intergenic |
| TAACATTGTAGATGGTGCAT+GGG | 0.570614 | 6_2:+77707554 | Msa0929580:CDS |
| CTCACCATGTCTGACTTAGG+TGG | 0.572352 | 6_2:+77704878 | None:intergenic |
| ACTTACTCGGATGTTAACTC+AGG | 0.572912 | 6_2:+77706265 | Msa0929580:CDS |
| GAAAGGTTGGTATGGACTGA+AGG | 0.575278 | 6_2:+77706045 | Msa0929580:CDS |
| GAGGCGACAAGCTTTATATG+AGG | 0.576586 | 6_2:+77706023 | Msa0929580:CDS |
| ACAAGGCTGGTCTAGGGTGA+AGG | 0.576887 | 6_2:+77707524 | Msa0929580:CDS |
| CATCATTGCCATCTCACTTG+GGG | 0.579124 | 6_2:-77705751 | None:intergenic |
| AACGTATACCCCAAGTGAGA+TGG | 0.579805 | 6_2:+77705743 | Msa0929580:CDS |
| AAATCTGTTGTTGATCGTCA+AGG | 0.579813 | 6_2:-77706131 | None:intergenic |
| ACAACATTGAGCTTGGTGCA+TGG | 0.580204 | 6_2:+77706074 | Msa0929580:CDS |
| CCAACAATCGTAAGTGTGGT+AGG | 0.580385 | 6_2:-77707921 | None:intergenic |
| CGAGACAGGTCCCTTCGCAC+AGG | 0.583465 | 6_2:-77706859 | None:intergenic |
| AGGTCTACTTCAGACAAGGC+TGG | 0.585540 | 6_2:+77707511 | Msa0929580:CDS |
| TCACTATCTCAAATATTGCA+AGG | 0.596203 | 6_2:+77708199 | Msa0929580:CDS |
| ATGACCATAAGAAACAAGGC+TGG | 0.597597 | 6_2:+77707612 | Msa0929580:CDS |
| CGACCTCGATCCTGTGCGAA+GGG | 0.601460 | 6_2:+77706849 | Msa0929580:CDS |
| ATGCCTTATGCTATGATTGG+TGG | 0.601798 | 6_2:+77707996 | Msa0929580:CDS |
| TTGGGGTATGTCGGAAACCA+AGG | 0.606539 | 6_2:-77708106 | None:intergenic |
| AATGAACCTCGGCAACGCAA+GGG | 0.607154 | 6_2:-77707667 | None:intergenic |
| AACGCTTTGGATGCTGCACA+AGG | 0.608033 | 6_2:+77704917 | Msa0929580:CDS |
| GTAAGTGTGGTAGGTTTCTG+TGG | 0.617237 | 6_2:-77707912 | None:intergenic |
| AGGTTTCACATAGTATCCAT+GGG | 0.622147 | 6_2:-77708138 | None:intergenic |
| CAACAGCGAACTTAACTGCA+TGG | 0.624703 | 6_2:-77708061 | None:intergenic |
| TCCATGGGTGCAGTGTATTG+GGG | 0.627336 | 6_2:-77708123 | None:intergenic |
| ACCTGATTTGCACATCGCAG+AGG | 0.634639 | 6_2:+77708027 | Msa0929580:CDS |
| AGGATGTTTGGTATTCACTG+TGG | 0.635952 | 6_2:+77706285 | Msa0929580:CDS |
| ATGGGTCTATCTGAAATATG+CGG | 0.636801 | 6_2:+77707572 | Msa0929580:CDS |
| ACGACCTCGATCCTGTGCGA+AGG | 0.639634 | 6_2:+77706848 | Msa0929580:CDS |
| GGTCCCTTCGCACAGGATCG+AGG | 0.647508 | 6_2:-77706852 | None:intergenic |
| TTCTGGCAGAAGCCATACCA+CGG | 0.648051 | 6_2:-77707882 | None:intergenic |
| GGCAAGGTCTACTTCAGACA+AGG | 0.649008 | 6_2:+77707507 | Msa0929580:CDS |
| CCTGATGAAGTAATGAACCT+CGG | 0.649312 | 6_2:-77707678 | None:intergenic |
| TTATTTAGCAGTTAAAGGCG+AGG | 0.655685 | 6_2:+77707379 | Msa0929580:intron |
| GAGGTTCATTACTTCATCAG+GGG | 0.659487 | 6_2:+77707680 | Msa0929580:CDS |
| CAAGTGAGATGGCAATGATG+AGG | 0.660753 | 6_2:+77705754 | Msa0929580:CDS |
| ACTCATGACCATAAGAAACA+AGG | 0.663177 | 6_2:+77707608 | Msa0929580:CDS |
| TCAAAATCTTGACAGATGTG+CGG | 0.663839 | 6_2:-77707725 | None:intergenic |
| CGGACCAACAATCGTAAGTG+TGG | 0.667344 | 6_2:-77707925 | None:intergenic |
| ATTTGAGATAGTGATTGACC+TGG | 0.673697 | 6_2:-77708190 | None:intergenic |
| GGGTCTATCTGAAATATGCG+GGG | 0.673953 | 6_2:+77707574 | Msa0929580:CDS |
| TATATACCAAAGTGCCCGAG+AGG | 0.678235 | 6_2:-77707761 | None:intergenic |
| TGTTTAACCAGACTTTGCCG+TGG | 0.679547 | 6_2:+77707865 | Msa0929580:intron |
| AAACCCACCTAAGTCAGACA+TGG | 0.685362 | 6_2:-77704882 | None:intergenic |
| TATGTGAAACCTATGGTCAG+CGG | 0.713139 | 6_2:+77708149 | Msa0929580:CDS |
| GAGGTTCGACTGTATCGCAG+AGG | 0.730544 | 6_2:+77706004 | Msa0929580:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGCATAATATAAAATATAAA+TGG | + | chr6_2:77705490-77705509 | Msa0929580:intron | 10.0% |
| !!! | TTATTTTGATTTTTAATGCA+TGG | + | chr6_2:77705167-77705186 | Msa0929580:intron | 15.0% |
| !! | AAAAGATTGAAAAAAACATT+TGG | - | chr6_2:77705559-77705578 | None:intergenic | 15.0% |
| !! | AAAAAACCATATAAATTCAT+TGG | - | chr6_2:77706812-77706831 | None:intergenic | 15.0% |
| !! | TACATTCTAATTTGAATATA+TGG | + | chr6_2:77707052-77707071 | Msa0929580:intron | 15.0% |
| !!! | TATGTTAACATTTTCTATTA+TGG | + | chr6_2:77707327-77707346 | Msa0929580:intron | 15.0% |
| !! | GGTTAATATAATTAGATATT+TGG | + | chr6_2:77707797-77707816 | Msa0929580:intron | 15.0% |
| !! | TTATGAGGAAAAAAAATCTA+TGG | + | chr6_2:77705016-77705035 | Msa0929580:intron | 20.0% |
| !! | GTATCTTAAGAATACAAAAT+TGG | - | chr6_2:77705271-77705290 | None:intergenic | 20.0% |
| !! | TACATGTTTACTCTTTATTA+TGG | + | chr6_2:77705288-77705307 | Msa0929580:intron | 20.0% |
| !!! | TTTAGGACAAAAAATATCTA+GGG | + | chr6_2:77705314-77705333 | Msa0929580:intron | 20.0% |
| !! | AGAAATAAACAATAACACAA+CGG | - | chr6_2:77706325-77706344 | None:intergenic | 20.0% |
| !!! | AACTAACGTACAAATTTTTT+CGG | - | chr6_2:77707217-77707236 | None:intergenic | 20.0% |
| !! | ATGTTAACATAAATTTATGC+CGG | - | chr6_2:77707318-77707337 | None:intergenic | 20.0% |
| !! | GATATTTATAACATTGTAGA+TGG | + | chr6_2:77707546-77707565 | Msa0929580:CDS | 20.0% |
| ! | AACATATTGTTAACATGCTA+AGG | - | chr6_2:77705108-77705127 | None:intergenic | 25.0% |
| ! | AAATAATGATATGCAACACA+GGG | - | chr6_2:77705153-77705172 | None:intergenic | 25.0% |
| ! | AAAATAATGATATGCAACAC+AGG | - | chr6_2:77705154-77705173 | None:intergenic | 25.0% |
| !!! | CTAGATATTTTTTGTCCTAA+AGG | - | chr6_2:77705315-77705334 | None:intergenic | 25.0% |
| !!! | CTTTAGGACAAAAAATATCT+AGG | + | chr6_2:77705313-77705332 | Msa0929580:intron | 25.0% |
| !!! | AACTTGTTATAAACATGCAA+AGG | - | chr6_2:77705527-77705546 | None:intergenic | 25.0% |
| ! | TTAGCATCAAACACATTTAT+TGG | - | chr6_2:77705870-77705889 | None:intergenic | 25.0% |
| ! | TTTCTGTTTGTGTTTAGTAA+CGG | + | chr6_2:77706354-77706373 | Msa0929580:intron | 25.0% |
| !! | TATATGTTGTTTATTCTGTC+CGG | + | chr6_2:77706766-77706785 | Msa0929580:intron | 25.0% |
| !! | AAATTTTCACGACAACAATA+AGG | + | chr6_2:77707025-77707044 | Msa0929580:intron | 25.0% |
| ! | GTTTCCTATCTAATATCATA+AGG | + | chr6_2:77707349-77707368 | Msa0929580:intron | 25.0% |
| !! | ACAACAATGATATTGTTGTT+TGG | - | chr6_2:77707468-77707487 | None:intergenic | 25.0% |
| !! | GGTATATAATTTGCACTAAT+TGG | + | chr6_2:77707776-77707795 | Msa0929580:intron | 25.0% |
| ! | ATTTCGTTCATTCGATTATA+AGG | + | chr6_2:77707822-77707841 | Msa0929580:intron | 25.0% |
| ACTCTTTATTATGGTCCTTT+AGG | + | chr6_2:77705297-77705316 | Msa0929580:intron | 30.0% | |
| ATCAAACATAACGATATCAG+AGG | - | chr6_2:77705464-77705483 | None:intergenic | 30.0% | |
| ! | CAATATTAGGAGGCATAAAA+GGG | - | chr6_2:77705626-77705645 | None:intergenic | 30.0% |
| ! | ACAATATTAGGAGGCATAAA+AGG | - | chr6_2:77705627-77705646 | None:intergenic | 30.0% |
| TATGTCCTCATCTATTAGAA+TGG | - | chr6_2:77705840-77705859 | None:intergenic | 30.0% | |
| ! | TGTTAATTTTCGTAGGGAAT+GGG | + | chr6_2:77705896-77705915 | Msa0929580:intron | 30.0% |
| TAGTCTTTCAAAAAGCAGTT+AGG | - | chr6_2:77705929-77705948 | None:intergenic | 30.0% | |
| !!! | AACTGCTTTTTGAAAGACTA+TGG | + | chr6_2:77705929-77705948 | Msa0929580:CDS | 30.0% |
| TACTCCAATAATATCCAAAC+TGG | + | chr6_2:77706183-77706202 | Msa0929580:CDS | 30.0% | |
| ! | CACTATTGAATTGACTTACT+CGG | + | chr6_2:77706252-77706271 | Msa0929580:CDS | 30.0% |
| ATCAAATCTGCATTTGTAGA+CGG | - | chr6_2:77706659-77706678 | None:intergenic | 30.0% | |
| ACAAATGCAGATTTGATTAG+AGG | + | chr6_2:77706662-77706681 | Msa0929580:intron | 30.0% | |
| ACAACATATACTTCAGTTCA+GGG | - | chr6_2:77706756-77706775 | None:intergenic | 30.0% | |
| AACAACATATACTTCAGTTC+AGG | - | chr6_2:77706757-77706776 | None:intergenic | 30.0% | |
| ACGAATAACAATCAAATTGC+CGG | - | chr6_2:77706788-77706807 | None:intergenic | 30.0% | |
| TTCGTGCCAATGAATTTATA+TGG | + | chr6_2:77706803-77706822 | Msa0929580:intron | 30.0% | |
| ! | AACAAAACTTGGTGGTTAAA+AGG | - | chr6_2:77706980-77706999 | None:intergenic | 30.0% |
| TCTATTACTCTCTACAAATC+CGG | - | chr6_2:77707110-77707129 | None:intergenic | 30.0% | |
| AGTTATCATAAACTCTGTCT+AGG | + | chr6_2:77707174-77707193 | Msa0929580:intron | 30.0% | |
| !!! | ATTTGTACGTTAGTTTTGTG+CGG | + | chr6_2:77707222-77707241 | Msa0929580:intron | 30.0% |
| CAGATATACTTTCTTATGTC+CGG | + | chr6_2:77707296-77707315 | Msa0929580:intron | 30.0% | |
| CACACCTTATGATATTAGAT+AGG | - | chr6_2:77707356-77707375 | None:intergenic | 30.0% | |
| ! | TGTCCTTATTTAGCAGTTAA+AGG | + | chr6_2:77707374-77707393 | Msa0929580:intron | 30.0% |
| ! | ACTTCTTTTGCAAAACATGA+AGG | - | chr6_2:77707408-77707427 | None:intergenic | 30.0% |
| ! | TCATGTTTTGCAAAAGAAGT+AGG | + | chr6_2:77707408-77707427 | Msa0929580:CDS | 30.0% |
| GTTGAAGTTCAGAAAAAGAA+TGG | + | chr6_2:77707486-77707505 | Msa0929580:CDS | 30.0% | |
| !! | GATATATCGGATAATGGATA+TGG | - | chr6_2:77707648-77707667 | None:intergenic | 30.0% |
| AAGGTTATCTTACTGTTTGT+TGG | + | chr6_2:77707841-77707860 | Msa0929580:intron | 30.0% | |
| AATATGCCTTATGCTATGAT+TGG | + | chr6_2:77707993-77708012 | Msa0929580:CDS | 30.0% | |
| TCACTATCTCAAATATTGCA+AGG | + | chr6_2:77708199-77708218 | Msa0929580:CDS | 30.0% | |
| !!! | TTAGGTGGGTTTGTTTTAAC+TGG | + | chr6_2:77704893-77704912 | Msa0929580:CDS | 35.0% |
| !!! | TGTTTTAACTGGAAACGCTT+TGG | + | chr6_2:77704904-77704923 | Msa0929580:CDS | 35.0% |
| CATAAACAACCACAGTAAAG+AGG | - | chr6_2:77705001-77705020 | None:intergenic | 35.0% | |
| CTTTACTGTGGTTGTTTATG+AGG | + | chr6_2:77705001-77705020 | Msa0929580:intron | 35.0% | |
| GGCATAAAAGGGAAAAAGTA+AGG | - | chr6_2:77705615-77705634 | None:intergenic | 35.0% | |
| AAGGAGCAGATCACAATATT+AGG | - | chr6_2:77705639-77705658 | None:intergenic | 35.0% | |
| AGCATGCATGAAAATGTTGT+AGG | + | chr6_2:77705699-77705718 | Msa0929580:intron | 35.0% | |
| ATGCATGAAAATGTTGTAGG+TGG | + | chr6_2:77705702-77705721 | Msa0929580:intron | 35.0% | |
| TGCATGAAAATGTTGTAGGT+GGG | + | chr6_2:77705703-77705722 | Msa0929580:intron | 35.0% | |
| CAGACATAGTGTCAAATTCA+AGG | - | chr6_2:77705788-77705807 | None:intergenic | 35.0% | |
| TCCTCATCTATTAGAATGGT+CGG | - | chr6_2:77705836-77705855 | None:intergenic | 35.0% | |
| CATCAAACACATTTATTGGC+AGG | - | chr6_2:77705866-77705885 | None:intergenic | 35.0% | |
| ! | GTGTTAATTTTCGTAGGGAA+TGG | + | chr6_2:77705895-77705914 | Msa0929580:intron | 35.0% |
| !! | TGCTTTTTGAAAGACTATGG+TGG | + | chr6_2:77705932-77705951 | Msa0929580:CDS | 35.0% |
| TCCAATGAACAATGAGATTG+AGG | + | chr6_2:77705985-77706004 | Msa0929580:CDS | 35.0% | |
| ACCTCAATCTCATTGTTCAT+TGG | - | chr6_2:77705989-77706008 | None:intergenic | 35.0% | |
| ! | GACAAGCTTTATATGAGGAA+AGG | + | chr6_2:77706028-77706047 | Msa0929580:CDS | 35.0% |
| ! | AGCTTTATATGAGGAAAGGT+TGG | + | chr6_2:77706032-77706051 | Msa0929580:CDS | 35.0% |
| !! | TATATGAGGAAAGGTTGGTA+TGG | + | chr6_2:77706037-77706056 | Msa0929580:CDS | 35.0% |
| ATCGTCAAGGTCATAAGATT+TGG | - | chr6_2:77706121-77706140 | None:intergenic | 35.0% | |
| AAATCTGTTGTTGATCGTCA+AGG | - | chr6_2:77706134-77706153 | None:intergenic | 35.0% | |
| ! | GATCAACAACAGATTTTTCG+AGG | + | chr6_2:77706138-77706157 | Msa0929580:CDS | 35.0% |
| ACTCCTATGTGTACAATTGA+AGG | + | chr6_2:77706521-77706540 | Msa0929580:intron | 35.0% | |
| TCACCTTCAATTGTACACAT+AGG | - | chr6_2:77706527-77706546 | None:intergenic | 35.0% | |
| TGTGTACAATTGAAGGTGAT+TGG | + | chr6_2:77706528-77706547 | Msa0929580:intron | 35.0% | |
| GTGTACAATTGAAGGTGATT+GGG | + | chr6_2:77706529-77706548 | Msa0929580:intron | 35.0% | |
| TGTACAATTGAAGGTGATTG+GGG | + | chr6_2:77706530-77706549 | Msa0929580:intron | 35.0% | |
| GCTTCTATATTCTGTTTCCA+AGG | + | chr6_2:77706716-77706735 | Msa0929580:intron | 35.0% | |
| AACGCAGCATAAACAAAACT+TGG | - | chr6_2:77706991-77707010 | None:intergenic | 35.0% | |
| ! | ATATGGTTGAAGAGTGTAAG+TGG | + | chr6_2:77707069-77707088 | Msa0929580:intron | 35.0% |
| ! | CATGTCTGAAATAGAAACCA+TGG | + | chr6_2:77707258-77707277 | Msa0929580:intron | 35.0% |
| TCGCCTTTAACTGCTAAATA+AGG | - | chr6_2:77707380-77707399 | None:intergenic | 35.0% | |
| TTATTTAGCAGTTAAAGGCG+AGG | + | chr6_2:77707379-77707398 | Msa0929580:intron | 35.0% | |
| AGTTCAGAAAAAGAATGGCA+AGG | + | chr6_2:77707491-77707510 | Msa0929580:CDS | 35.0% | |
| ATAACATTGTAGATGGTGCA+TGG | + | chr6_2:77707553-77707572 | Msa0929580:CDS | 35.0% | |
| TAACATTGTAGATGGTGCAT+GGG | + | chr6_2:77707554-77707573 | Msa0929580:CDS | 35.0% | |
| ! | ATGGGTCTATCTGAAATATG+CGG | + | chr6_2:77707572-77707591 | Msa0929580:CDS | 35.0% |
| ATGGTCATGAGTAGTAGATT+AGG | - | chr6_2:77707600-77707619 | None:intergenic | 35.0% | |
| ACTCATGACCATAAGAAACA+AGG | + | chr6_2:77707608-77707627 | Msa0929580:CDS | 35.0% | |
| TCAAAATCTTGACAGATGTG+CGG | - | chr6_2:77707728-77707747 | None:intergenic | 35.0% | |
| CATATTATTTGCAACAGCGA+AGG | - | chr6_2:77707979-77707998 | None:intergenic | 35.0% | |
| AGGTTTCACATAGTATCCAT+GGG | - | chr6_2:77708141-77708160 | None:intergenic | 35.0% | |
| TAGGTTTCACATAGTATCCA+TGG | - | chr6_2:77708142-77708161 | None:intergenic | 35.0% | |
| TGGATACTATGTGAAACCTA+TGG | + | chr6_2:77708142-77708161 | Msa0929580:CDS | 35.0% | |
| ! | ATTTGAGATAGTGATTGACC+TGG | - | chr6_2:77708193-77708212 | None:intergenic | 35.0% |
| TGCATGTTACCTCTTTACTG+TGG | + | chr6_2:77704989-77705008 | Msa0929580:intron | 40.0% | |
| GACATGCAAAGCTATGTTCT+AGG | - | chr6_2:77705202-77705221 | None:intergenic | 40.0% | |
| !! | CCTATACTGGTAACTTGCTA+AGG | - | chr6_2:77705414-77705433 | None:intergenic | 40.0% |
| CCTTAGCAAGTTACCAGTAT+AGG | + | chr6_2:77705411-77705430 | Msa0929580:intron | 40.0% | |
| ACATAACGATATCAGAGGCA+TGG | - | chr6_2:77705459-77705478 | None:intergenic | 40.0% | |
| AGGCTTCTTGTTACTCTGAT+GGG | - | chr6_2:77705595-77705614 | None:intergenic | 40.0% | |
| AAGGCTTCTTGTTACTCTGA+TGG | - | chr6_2:77705596-77705615 | None:intergenic | 40.0% | |
| GAGCAGATCACAATATTAGG+AGG | - | chr6_2:77705636-77705655 | None:intergenic | 40.0% | |
| GCATGAAAATGTTGTAGGTG+GGG | + | chr6_2:77705704-77705723 | Msa0929580:intron | 40.0% | |
| CATGAAAATGTTGTAGGTGG+GGG | + | chr6_2:77705705-77705724 | Msa0929580:intron | 40.0% | |
| TCATCATTGCCATCTCACTT+GGG | - | chr6_2:77705755-77705774 | None:intergenic | 40.0% | |
| TCCGACCATTCTAATAGATG+AGG | + | chr6_2:77705832-77705851 | Msa0929580:intron | 40.0% | |
| ! | ATGCGCGTGTTAATTTTCGT+AGG | + | chr6_2:77705889-77705908 | Msa0929580:intron | 40.0% |
| ! | TGCGCGTGTTAATTTTCGTA+GGG | + | chr6_2:77705890-77705909 | Msa0929580:intron | 40.0% |
| ! | AATTTTCGTAGGGAATGGGT+CGG | + | chr6_2:77705900-77705919 | Msa0929580:intron | 40.0% |
| GACTTCTACAACATTGAGCT+TGG | + | chr6_2:77706067-77706086 | Msa0929580:CDS | 40.0% | |
| ATTATTGGAGTAGTGTGAGC+AGG | - | chr6_2:77706175-77706194 | None:intergenic | 40.0% | |
| CGGTCCAGTTTGGATATTAT+TGG | - | chr6_2:77706190-77706209 | None:intergenic | 40.0% | |
| ACTTACTCGGATGTTAACTC+AGG | + | chr6_2:77706265-77706284 | Msa0929580:CDS | 40.0% | |
| GGATGTTAACTCAGGATGTT+TGG | + | chr6_2:77706273-77706292 | Msa0929580:CDS | 40.0% | |
| AGGATGTTTGGTATTCACTG+TGG | + | chr6_2:77706285-77706304 | Msa0929580:CDS | 40.0% | |
| ATTAGACATTGCCGTGGTTT+GGG | + | chr6_2:77706396-77706415 | Msa0929580:intron | 40.0% | |
| CGTGTTACCTCCGATAAATA+CGG | + | chr6_2:77706430-77706449 | Msa0929580:intron | 40.0% | |
| ACAGTGAGGTCCGTATTTAT+CGG | - | chr6_2:77706443-77706462 | None:intergenic | 40.0% | |
| CAACGTAATCAATGACAGTG+AGG | - | chr6_2:77706457-77706476 | None:intergenic | 40.0% | |
| ! | CTCACTGTCATTGATTACGT+TGG | + | chr6_2:77706455-77706474 | Msa0929580:intron | 40.0% |
| TTGATTACGTTGGATTTGCC+TGG | + | chr6_2:77706465-77706484 | Msa0929580:intron | 40.0% | |
| TGTCACGCTGAATGAACTTT+AGG | - | chr6_2:77706499-77706518 | None:intergenic | 40.0% | |
| GTACAATTGAAGGTGATTGG+GGG | + | chr6_2:77706531-77706550 | Msa0929580:intron | 40.0% | |
| TGATTGGGGGACAATATGTA+AGG | + | chr6_2:77706544-77706563 | Msa0929580:intron | 40.0% | |
| !! | TGATTAGAGGCATTGATCCA+AGG | + | chr6_2:77706675-77706694 | Msa0929580:intron | 40.0% |
| TCAGACTGCAATATGAACCT+TGG | - | chr6_2:77706695-77706714 | None:intergenic | 40.0% | |
| GGGTACAAAATGCATAACCT+TGG | - | chr6_2:77706736-77706755 | None:intergenic | 40.0% | |
| GCAGCATAAACAAAACTTGG+TGG | - | chr6_2:77706988-77707007 | None:intergenic | 40.0% | |
| GTGGATAAAATGATGCAGAC+CGG | + | chr6_2:77707088-77707107 | Msa0929580:intron | 40.0% | |
| TGACAGATAAAGTTCAGCCA+TGG | - | chr6_2:77707278-77707297 | None:intergenic | 40.0% | |
| ! | TGGGTCTATCTGAAATATGC+GGG | + | chr6_2:77707573-77707592 | Msa0929580:CDS | 40.0% |
| ATGACCATAAGAAACAAGGC+TGG | + | chr6_2:77707612-77707631 | Msa0929580:CDS | 40.0% | |
| !! | CAATCCAGCCTTGTTTCTTA+TGG | - | chr6_2:77707619-77707638 | None:intergenic | 40.0% |
| CATAAGAAACAAGGCTGGAT+TGG | + | chr6_2:77707617-77707636 | Msa0929580:CDS | 40.0% | |
| GCAAGGGATATATCGGATAA+TGG | - | chr6_2:77707654-77707673 | None:intergenic | 40.0% | |
| CCTGATGAAGTAATGAACCT+CGG | - | chr6_2:77707681-77707700 | None:intergenic | 40.0% | |
| CGAGGTTCATTACTTCATCA+GGG | + | chr6_2:77707679-77707698 | Msa0929580:CDS | 40.0% | |
| GAGGTTCATTACTTCATCAG+GGG | + | chr6_2:77707680-77707699 | Msa0929580:CDS | 40.0% | |
| TGCGGAAAAAATGCACTAAC+TGG | - | chr6_2:77707710-77707729 | None:intergenic | 40.0% | |
| ATGCCTTATGCTATGATTGG+TGG | + | chr6_2:77707996-77708015 | Msa0929580:CDS | 40.0% | |
| TCACCACCAATCATAGCATA+AGG | - | chr6_2:77708002-77708021 | None:intergenic | 40.0% | |
| !! | ATGCTATGATTGGTGGTGAT+TGG | + | chr6_2:77708003-77708022 | Msa0929580:CDS | 40.0% |
| GGACTGTGTTATCTTTGTCA+TGG | - | chr6_2:77708088-77708107 | None:intergenic | 40.0% | |
| GACAAAGATAACACAGTCCT+TGG | + | chr6_2:77708089-77708108 | Msa0929580:CDS | 40.0% | |
| TATGTGAAACCTATGGTCAG+CGG | + | chr6_2:77708149-77708168 | Msa0929580:CDS | 40.0% | |
| TGCACAAGGAATGCTGTCAT+TGG | + | chr6_2:77704931-77704950 | Msa0929580:CDS | 45.0% | |
| CGCTGTCATAGAACCTATAC+TGG | - | chr6_2:77705427-77705446 | None:intergenic | 45.0% | |
| !! | TCTTGTTACTCTGATGGGCT+GGG | - | chr6_2:77705590-77705609 | None:intergenic | 45.0% |
| ! | TTCTTGTTACTCTGATGGGC+TGG | - | chr6_2:77705591-77705610 | None:intergenic | 45.0% |
| TGCATGCTGCAAATCAGCTT+TGG | - | chr6_2:77705687-77705706 | None:intergenic | 45.0% | |
| ATCTCACTTGGGGTATACGT+TGG | - | chr6_2:77705744-77705763 | None:intergenic | 45.0% | |
| AACGTATACCCCAAGTGAGA+TGG | + | chr6_2:77705743-77705762 | Msa0929580:CDS | 45.0% | |
| CATCATTGCCATCTCACTTG+GGG | - | chr6_2:77705754-77705773 | None:intergenic | 45.0% | |
| CTCATCATTGCCATCTCACT+TGG | - | chr6_2:77705756-77705775 | None:intergenic | 45.0% | |
| CAAGTGAGATGGCAATGATG+AGG | + | chr6_2:77705754-77705773 | Msa0929580:CDS | 45.0% | |
| ! | GAGGCGACAAGCTTTATATG+AGG | + | chr6_2:77706023-77706042 | Msa0929580:CDS | 45.0% |
| !! | GAAAGGTTGGTATGGACTGA+AGG | + | chr6_2:77706045-77706064 | Msa0929580:CDS | 45.0% |
| !! | ACAACATTGAGCTTGGTGCA+TGG | + | chr6_2:77706074-77706093 | Msa0929580:CDS | 45.0% |
| AAAATCACGACGGTCCAGTT+TGG | - | chr6_2:77706200-77706219 | None:intergenic | 45.0% | |
| ! | AAACTGGACCGTCGTGATTT+TGG | + | chr6_2:77706199-77706218 | Msa0929580:CDS | 45.0% |
| ! | AACTGGACCGTCGTGATTTT+GGG | + | chr6_2:77706200-77706219 | Msa0929580:CDS | 45.0% |
| AATTCCCCCCAAAATCACGA+CGG | - | chr6_2:77706210-77706229 | None:intergenic | 45.0% | |
| !! | TCGTGATTTTGGGGGGAATT+TGG | + | chr6_2:77706210-77706229 | Msa0929580:CDS | 45.0% |
| ATCTGCATTAGACATTGCCG+TGG | + | chr6_2:77706390-77706409 | Msa0929580:intron | 45.0% | |
| CATTAGACATTGCCGTGGTT+TGG | + | chr6_2:77706395-77706414 | Msa0929580:intron | 45.0% | |
| GAACTTTAGGTCACATCTCC+AGG | - | chr6_2:77706486-77706505 | None:intergenic | 45.0% | |
| AACGACCTTCGACAAACCTA+CGG | - | chr6_2:77706571-77706590 | None:intergenic | 45.0% | |
| !!! | TGTACGTTAGTTTTGTGCGG+TGG | + | chr6_2:77707225-77707244 | Msa0929580:intron | 45.0% |
| ! | GGGTCTATCTGAAATATGCG+GGG | + | chr6_2:77707574-77707593 | Msa0929580:CDS | 45.0% |
| CCGAGGTTCATTACTTCATC+AGG | + | chr6_2:77707678-77707697 | Msa0929580:CDS | 45.0% | |
| ! | TATATACCAAAGTGCCCGAG+AGG | - | chr6_2:77707764-77707783 | None:intergenic | 45.0% |
| TGTTTAACCAGACTTTGCCG+TGG | + | chr6_2:77707865-77707884 | Msa0929580:intron | 45.0% | |
| GTTTCTGTGGCAAGGATTTC+TGG | - | chr6_2:77707902-77707921 | None:intergenic | 45.0% | |
| GTAAGTGTGGTAGGTTTCTG+TGG | - | chr6_2:77707915-77707934 | None:intergenic | 45.0% | |
| CCAACAATCGTAAGTGTGGT+AGG | - | chr6_2:77707924-77707943 | None:intergenic | 45.0% | |
| CCTACCACACTTACGATTGT+TGG | + | chr6_2:77707921-77707940 | Msa0929580:CDS | 45.0% | |
| CTTACGATTGTTGGTCCGAA+CGG | + | chr6_2:77707930-77707949 | Msa0929580:CDS | 45.0% | |
| CAACAGCGAACTTAACTGCA+TGG | - | chr6_2:77708064-77708083 | None:intergenic | 45.0% | |
| TGCAGTGTATTGGGGTATGT+CGG | - | chr6_2:77708118-77708137 | None:intergenic | 45.0% | |
| ATCCATGGGTGCAGTGTATT+GGG | - | chr6_2:77708127-77708146 | None:intergenic | 45.0% | |
| TATCCATGGGTGCAGTGTAT+TGG | - | chr6_2:77708128-77708147 | None:intergenic | 45.0% | |
| GAGTATGCTGGAACAGATGT+CGG | + | chr6_2:77708226-77708245 | Msa0929580:CDS | 45.0% | |
| AGTATGCTGGAACAGATGTC+GGG | + | chr6_2:77708227-77708246 | Msa0929580:CDS | 45.0% | |
| ! | AACGCTTTGGATGCTGCACA+AGG | + | chr6_2:77704917-77704936 | Msa0929580:CDS | 50.0% |
| CAAGGAATGCTGTCATTGGC+AGG | + | chr6_2:77704935-77704954 | Msa0929580:CDS | 50.0% | |
| ATCTGCTCCTTGCTTGAGTG+TGG | + | chr6_2:77705648-77705667 | Msa0929580:intron | 50.0% | |
| ! | ACTGGACCGTCGTGATTTTG+GGG | + | chr6_2:77706201-77706220 | Msa0929580:CDS | 50.0% |
| CGCTTACAGAACCCAAACCA+CGG | - | chr6_2:77706410-77706429 | None:intergenic | 50.0% | |
| GTGAGGTCCGTATTTATCGG+AGG | - | chr6_2:77706440-77706459 | None:intergenic | 50.0% | |
| GGACAATATGTAAGGCCCGT+AGG | + | chr6_2:77706552-77706571 | Msa0929580:intron | 50.0% | |
| ACGACCTTCGACAAACCTAC+GGG | - | chr6_2:77706570-77706589 | None:intergenic | 50.0% | |
| AGGTCGTTCGATAGACCTTG+CGG | + | chr6_2:77706583-77706602 | Msa0929580:intron | 50.0% | |
| TTCGATAGACCTTGCGGTCA+CGG | + | chr6_2:77706589-77706608 | Msa0929580:intron | 50.0% | |
| CTGCATTTGTAGACGGCACA+GGG | - | chr6_2:77706652-77706671 | None:intergenic | 50.0% | |
| TCTGCATTTGTAGACGGCAC+AGG | - | chr6_2:77706653-77706672 | None:intergenic | 50.0% | |
| GATAAGTCCTCAACCGAGAC+AGG | - | chr6_2:77706876-77706895 | None:intergenic | 50.0% | |
| GGCAAGGTCTACTTCAGACA+AGG | + | chr6_2:77707507-77707526 | Msa0929580:CDS | 50.0% | |
| AGGTCTACTTCAGACAAGGC+TGG | + | chr6_2:77707511-77707530 | Msa0929580:CDS | 50.0% | |
| !! | ACTTCAGACAAGGCTGGTCT+AGG | + | chr6_2:77707517-77707536 | Msa0929580:CDS | 50.0% |
| !! | CTTCAGACAAGGCTGGTCTA+GGG | + | chr6_2:77707518-77707537 | Msa0929580:CDS | 50.0% |
| CGGCAACGCAAGGGATATAT+CGG | - | chr6_2:77707661-77707680 | None:intergenic | 50.0% | |
| ATATATCCCTTGCGTTGCCG+AGG | + | chr6_2:77707661-77707680 | Msa0929580:CDS | 50.0% | |
| AATGAACCTCGGCAACGCAA+GGG | - | chr6_2:77707670-77707689 | None:intergenic | 50.0% | |
| TAATGAACCTCGGCAACGCA+AGG | - | chr6_2:77707671-77707690 | None:intergenic | 50.0% | |
| GACTTCGTCTGATGTCCTCT+CGG | + | chr6_2:77707746-77707765 | Msa0929580:CDS | 50.0% | |
| ACTTCGTCTGATGTCCTCTC+GGG | + | chr6_2:77707747-77707766 | Msa0929580:CDS | 50.0% | |
| AACCAGACTTTGCCGTGGTA+TGG | + | chr6_2:77707870-77707889 | Msa0929580:intron | 50.0% | |
| TTCTGGCAGAAGCCATACCA+CGG | - | chr6_2:77707885-77707904 | None:intergenic | 50.0% | |
| TGTGGTAGGTTTCTGTGGCA+AGG | - | chr6_2:77707910-77707929 | None:intergenic | 50.0% | |
| CGGACCAACAATCGTAAGTG+TGG | - | chr6_2:77707928-77707947 | None:intergenic | 50.0% | |
| CATCTCCATGTACAGCCGTT+CGG | - | chr6_2:77707948-77707967 | None:intergenic | 50.0% | |
| ! | ACCTGATTTGCACATCGCAG+AGG | + | chr6_2:77708027-77708046 | Msa0929580:CDS | 50.0% |
| ACCTCTGCGATGTGCAAATC+AGG | - | chr6_2:77708031-77708050 | None:intergenic | 50.0% | |
| GATTTGCACATCGCAGAGGT+TGG | + | chr6_2:77708031-77708050 | Msa0929580:CDS | 50.0% | |
| TTGGGGTATGTCGGAAACCA+AGG | - | chr6_2:77708109-77708128 | None:intergenic | 50.0% | |
| TCCATGGGTGCAGTGTATTG+GGG | - | chr6_2:77708126-77708145 | None:intergenic | 50.0% | |
| CAGTGGTCGATATGTGTACC+AGG | + | chr6_2:77708172-77708191 | Msa0929580:CDS | 50.0% | |
| ! | TTGCAAGGCGAAGAGTATGC+TGG | + | chr6_2:77708214-77708233 | Msa0929580:CDS | 50.0% |
| GGAATGCTGTCATTGGCAGG+TGG | + | chr6_2:77704938-77704957 | Msa0929580:intron | 55.0% | |
| CCAACGACCACACTCAAGCA+AGG | - | chr6_2:77705658-77705677 | None:intergenic | 55.0% | |
| CCTTGCTTGAGTGTGGTCGT+TGG | + | chr6_2:77705655-77705674 | Msa0929580:intron | 55.0% | |
| GAGGTTCGACTGTATCGCAG+AGG | + | chr6_2:77706004-77706023 | Msa0929580:CDS | 55.0% | |
| ! | CTGGACCGTCGTGATTTTGG+GGG | + | chr6_2:77706202-77706221 | Msa0929580:CDS | 55.0% |
| ! | TGGACCGTCGTGATTTTGGG+GGG | + | chr6_2:77706203-77706222 | Msa0929580:CDS | 55.0% |
| AAGGCCCGTAGGTTTGTCGA+AGG | + | chr6_2:77706563-77706582 | Msa0929580:intron | 55.0% | |
| !! | ACAAGGCTGGTCTAGGGTGA+AGG | + | chr6_2:77707524-77707543 | Msa0929580:CDS | 55.0% |
| TGATGTCCTCTCGGGCACTT+TGG | + | chr6_2:77707755-77707774 | Msa0929580:CDS | 55.0% | |
| AGCCATACCACGGCAAAGTC+TGG | - | chr6_2:77707875-77707894 | None:intergenic | 55.0% | |
| TTGGTCCGAACGGCTGTACA+TGG | + | chr6_2:77707940-77707959 | Msa0929580:CDS | 55.0% | |
| ! | ACATCGCAGAGGTTGGTTGC+AGG | + | chr6_2:77708038-77708057 | Msa0929580:CDS | 55.0% |
| ACCCCAATACACTGCACCCA+TGG | + | chr6_2:77708122-77708141 | Msa0929580:CDS | 55.0% | |
| AAACCTATGGTCAGCGGCAG+TGG | + | chr6_2:77708155-77708174 | Msa0929580:CDS | 55.0% | |
| GATAGACCTTGCGGTCACGG+AGG | + | chr6_2:77706592-77706611 | Msa0929580:intron | 60.0% | |
| TCTTCTCCTCCGTGACCGCA+AGG | - | chr6_2:77706601-77706620 | None:intergenic | 60.0% | |
| ACGACCTCGATCCTGTGCGA+AGG | + | chr6_2:77706848-77706867 | Msa0929580:CDS | 60.0% | |
| CGACCTCGATCCTGTGCGAA+GGG | + | chr6_2:77706849-77706868 | Msa0929580:CDS | 60.0% | |
| CTGTGCGAAGGGACCTGTCT+CGG | + | chr6_2:77706860-77706879 | Msa0929580:CDS | 60.0% | |
| GAAGGGACCTGTCTCGGTTG+AGG | + | chr6_2:77706866-77706885 | Msa0929580:CDS | 60.0% | |
| GGTCCCTTCGCACAGGATCG+AGG | - | chr6_2:77706855-77706874 | None:intergenic | 65.0% | |
| CGAGACAGGTCCCTTCGCAC+AGG | - | chr6_2:77706862-77706881 | None:intergenic | 65.0% | |
| CGACCACTGCCGCTGACCAT+AGG | - | chr6_2:77708161-77708180 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 77704884 | 77708253 | 77704884 | ID=Msa0929580;Name=Msa0929580 |
| chr6_2 | mRNA | 77704884 | 77708253 | 77704884 | ID=Msa0929580-mRNA-1;Parent=Msa0929580;Name=Msa0929580-mRNA-1;_AED=0.38;_eAED=0.38;_QI=0|0|0|0.5|0.6|0.66|6|0|473 |
| chr6_2 | exon | 77704884 | 77704956 | 77704884 | ID=Msa0929580-mRNA-1:exon:13140;Parent=Msa0929580-mRNA-1 |
| chr6_2 | exon | 77705721 | 77705806 | 77705721 | ID=Msa0929580-mRNA-1:exon:13141;Parent=Msa0929580-mRNA-1 |
| chr6_2 | exon | 77705911 | 77706328 | 77705911 | ID=Msa0929580-mRNA-1:exon:13142;Parent=Msa0929580-mRNA-1 |
| chr6_2 | exon | 77706839 | 77706918 | 77706839 | ID=Msa0929580-mRNA-1:exon:13143;Parent=Msa0929580-mRNA-1 |
| chr6_2 | exon | 77707390 | 77707776 | 77707390 | ID=Msa0929580-mRNA-1:exon:13144;Parent=Msa0929580-mRNA-1 |
| chr6_2 | exon | 77707876 | 77708253 | 77707876 | ID=Msa0929580-mRNA-1:exon:13145;Parent=Msa0929580-mRNA-1 |
| chr6_2 | CDS | 77704884 | 77704956 | 77704884 | ID=Msa0929580-mRNA-1:cds;Parent=Msa0929580-mRNA-1 |
| chr6_2 | CDS | 77705721 | 77705806 | 77705721 | ID=Msa0929580-mRNA-1:cds;Parent=Msa0929580-mRNA-1 |
| chr6_2 | CDS | 77705911 | 77706328 | 77705911 | ID=Msa0929580-mRNA-1:cds;Parent=Msa0929580-mRNA-1 |
| chr6_2 | CDS | 77706839 | 77706918 | 77706839 | ID=Msa0929580-mRNA-1:cds;Parent=Msa0929580-mRNA-1 |
| chr6_2 | CDS | 77707390 | 77707776 | 77707390 | ID=Msa0929580-mRNA-1:cds;Parent=Msa0929580-mRNA-1 |
| chr6_2 | CDS | 77707876 | 77708253 | 77707876 | ID=Msa0929580-mRNA-1:cds;Parent=Msa0929580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
