AlfalfaGEDB | Msa0930010

M. sativa cultivar zhongmu-4 / Msa0930010

KEGG: K12606|K13754
GO: GO:0000003 GO:0000075 GO:0000077 GO:0000278 GO:0000288 GO:0000289 GO:0000932 GO:0000956 GO:0001932 GO:0001934 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005102 GO:0005154 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006355 GO:0006357 GO:0006401 GO:0006402 GO:0006417 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006977 GO:0007044 GO:0007049 GO:0007093 GO:0007154 GO:0007165 GO:0007166 GO:0007276 GO:0007283 GO:0007346 GO:0007548 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009966 GO:0009967 GO:0009968 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010562 GO:0010564 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010646 GO:0010647 GO:0010648 GO:0010948 GO:0016043 GO:0016070 GO:0016071 GO:0017148 GO:0019219 GO:0019220 GO:0019221 GO:0019222 GO:0019439 GO:0019899 GO:0019900 GO:0019904 GO:0019953 GO:0022402 GO:0022414 GO:0022607 GO:0023051 GO:0023052 GO:0023056 GO:0023057 GO:0030014 GO:0030015 GO:0030330 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031401 GO:0031570 GO:0031571 GO:0031581 GO:0032268 GO:0032269 GO:0032270 GO:0032501 GO:0032502 GO:0032504 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0033135 GO:0033138 GO:0033143 GO:0033144 GO:0033146 GO:0033147 GO:0033554 GO:0034097 GO:0034243 GO:0034248 GO:0034249 GO:0034329 GO:0034330 GO:0034641 GO:0034655 GO:0035556 GO:0035770 GO:0036464 GO:0042058 GO:0042221 GO:0042325 GO:0042327 GO:0042770 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045742 GO:0045786 GO:0045787 GO:0045893 GO:0045930 GO:0045935 GO:0045937 GO:0045944 GO:0046483 GO:0046700 GO:0046983 GO:0048232 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0048609 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051254 GO:0051704 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0070851 GO:0070887 GO:0071156 GO:0071158 GO:0071310 GO:0071345 GO:0071704 GO:0071840 GO:0072331 GO:0072395 GO:0072401 GO:0072413 GO:0072422 GO:0072431 GO:0080090 GO:0090068 GO:0090304 GO:0097159 GO:1901184 GO:1901186 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902400 GO:1902402 GO:1902403 GO:1902680 GO:1902806 GO:1902807 GO:1903047 GO:1903506 GO:1903508 GO:1990904 GO:2000045 GO:2000112 GO:2000113 GO:2000134 GO:2000325 GO:2000327 GO:2001141
PFAM: PF04078.16

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0930010	RHN43893.1	77.491	271	27	3	1	252	1	256	2.25e-135	396

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0930010	sp\|Q6P819\|CNOT9_XENTR	57.895	209	58	2	43	251	28	206	5.50e-72	225

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

TFs/TRs:

Gene ID	Type	Classification
Msa0930010	TR	Rcd1-like

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0930010	MtrunA17_Chr8g0392781	77.491	271	27	3	1	252	1	256	2.07e-139	396
Msa0930010	MtrunA17_Chr6g0477171	75.258	194	18	2	59	252	45	208	8.02e-94	276
Msa0930010	MtrunA17_Chr7g0224601	60.324	247	68	3	11	255	1	219	5.82e-86	258
Msa0930010	MtrunA17_Chr3g0099561	62.150	214	51	2	38	251	26	209	2.36e-80	244
Msa0930010	MtrunA17_Chr1g0177151	51.793	251	87	3	1	251	1	217	1.19e-78	238
Msa0930010	MtrunA17_Chr5g0444621	52.000	175	54	2	78	252	60	204	1.93e-48	161
Msa0930010	MtrunA17_Chr3g0083821	65.217	92	32	0	81	172	37	128	7.00e-35	122
Msa0930010	MtrunA17_Chr6g0477181	86.441	59	8	0	1	59	1	59	2.17e-29	106
Msa0930010	MtrunA17_Chr5g0444631	63.158	57	21	0	112	168	4	60	4.33e-19	78.6

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0930010	AT3G20800.1	55.777	251	73	4	6	251	5	222	1.90e-81	247
Msa0930010	AT5G12980.1	55.000	220	69	2	32	251	29	218	3.53e-74	229
Msa0930010	AT2G32550.3	32.000	200	90	7	67	256	42	205	3.38e-17	79.7
Msa0930010	AT2G32550.2	32.000	200	90	7	67	256	81	244	4.18e-17	79.7
Msa0930010	AT2G32550.1	31.902	163	72	5	104	258	29	160	8.60e-14	69.3

Find 33 sgRNAs with CRISPR-Local

Find 219 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CACCACAGTTTGAGTATTTA+AGG	0.083275	6_2:-78811786	Msa0930010:CDS
CAGAACTTGCATCTTTATTA+TGG	0.166706	6_2:-78812910	Msa0930010:CDS
TCTTTATTATGGAATTCTTT+TGG	0.317731	6_2:-78812899	Msa0930010:CDS
CATAATAAAGATGCAAGTTC+TGG	0.318259	6_2:+78812911	None:intergenic
AAGGTAACCCATGACTTCTT+TGG	0.326447	6_2:+78811118	None:intergenic
GAATTATCTCGCTTAAAATA+AGG	0.331775	6_2:+78811099	None:intergenic
TAACGTTCTTGCACTACTTC+AGG	0.385082	6_2:-78812408	Msa0930010:intron
GTTCCATGCAAGCCATCGTT+TGG	0.386118	6_2:+78815145	None:intergenic
TGCTTAAGCAACATGGAGAT+TGG	0.389189	6_2:-78811071	Msa0930010:CDS
TTTGCAAGTCTTGGAGTCAT+TGG	0.412772	6_2:-78811763	Msa0930010:CDS
TTCCATGCAAGCCATCGTTT+GGG	0.421727	6_2:+78815146	None:intergenic
TGCCCAAACGATGGCTTGCA+TGG	0.424700	6_2:-78815148	Msa0930010:CDS
TATTTAAGGTTTGCAAGTCT+TGG	0.428903	6_2:-78811772	Msa0930010:CDS
TTTATTGGATGATGGTGGTT+TGG	0.429087	6_2:-78810825	Msa0930010:CDS
TTCTTCATTGTGAGCGAATG+AGG	0.447112	6_2:+78815222	None:intergenic
GCAAGCCATCGTTTGGGCAG+TGG	0.471268	6_2:+78815152	None:intergenic
TTCATGTAATACCTTCACTA+AGG	0.484633	6_2:+78811738	None:intergenic
TCTTCGTCTGTAGCTCCTCT+TGG	0.485469	6_2:-78815195	Msa0930010:CDS
ACAAGGATGTTGTTCTTGAA+TGG	0.500026	6_2:-78812115	Msa0930010:intron
CGCTCTTCGTGTGCTCTCCA+AGG	0.522456	6_2:-78815082	Msa0930010:intron
TCCATTGTGCTTAAGCAACA+TGG	0.523480	6_2:-78811078	Msa0930010:CDS
TTATAACACCAAAGAAGTCA+TGG	0.561401	6_2:-78811126	Msa0930010:CDS
AACCTTAAATACTCAAACTG+TGG	0.565441	6_2:+78811784	None:intergenic
AGTCATTGGCGCCTTAGTGA+AGG	0.595063	6_2:-78811749	Msa0930010:CDS
TCCATGTTGCTTAAGCACAA+TGG	0.605260	6_2:+78811077	None:intergenic
TATAACACCAAAGAAGTCAT+GGG	0.614555	6_2:-78811125	Msa0930010:CDS
TGGCATCTCACTCTGAAACA+AGG	0.635503	6_2:-78812132	Msa0930010:CDS
AAGAACCACTGCCCAAACGA+TGG	0.643808	6_2:-78815157	Msa0930010:CDS
AGGAAGGGATACAAATACAA+AGG	0.647299	6_2:+78811826	None:intergenic
GATTGTGCTAGAGTAAGAGT+CGG	0.683303	6_2:+78812443	None:intergenic
GATTGAGTAGAAGCACCAAG+AGG	0.698261	6_2:+78815180	None:intergenic
GATTGCTGAGTTCAATAACA+AGG	0.706948	6_2:+78815121	None:intergenic
TGTGCTAGAGTAAGAGTCGG+TGG	0.715335	6_2:+78812446	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TTTTATTTTATTTTATTTTT+TGG	-	chr6_2:78813679-78813698	Msa0930010:intron	0.0%
!!!	ATTTTAAAATAATATAATTT+GGG	+	chr6_2:78814461-78814480	None:intergenic	0.0%
!!!	AATTTTAAAATAATATAATT+TGG	+	chr6_2:78814462-78814481	None:intergenic	0.0%
!!	AAAAAAATTTAAAGATACAT+CGG	+	chr6_2:78811338-78811357	None:intergenic	10.0%
!!!	TCTTTTTATAAAAATATCTA+AGG	+	chr6_2:78811770-78811789	None:intergenic	10.0%
!!!	TATTTTAGTTAACAATAATT+GGG	+	chr6_2:78812466-78812485	None:intergenic	10.0%
!!!	TTATTTTAGTTAACAATAAT+TGG	+	chr6_2:78812467-78812486	None:intergenic	10.0%
!!!	TGACATTTTATATTATAAAT+TGG	-	chr6_2:78812984-78813003	Msa0930010:intron	10.0%
!!!	ATTTTATATTATAAATTGGT+TGG	-	chr6_2:78812988-78813007	Msa0930010:intron	10.0%
!!	TGAATGAAATTATATATTAT+TGG	-	chr6_2:78813164-78813183	Msa0930010:intron	10.0%
!!	AAAACATATAAACATAATTT+GGG	+	chr6_2:78813252-78813271	None:intergenic	10.0%
!!!	TTTTAAATTTGAGTATATTA+TGG	-	chr6_2:78813991-78814010	Msa0930010:intron	10.0%
!!	TTAAATACAAAATATAATCA+TGG	-	chr6_2:78814035-78814054	Msa0930010:intron	10.0%
!!	TAAATACAAAATATAATCAT+GGG	-	chr6_2:78814036-78814055	Msa0930010:intron	10.0%
!!!	TATAATGCATAAAATTTTAT+TGG	-	chr6_2:78815166-78815185	Msa0930010:CDS	10.0%
!!!	AAAAAAAAAAAAGGTATAAG+TGG	+	chr6_2:78811492-78811511	None:intergenic	15.0%
!!!	CCTTTTTTTTTTTTTAAACT+CGG	-	chr6_2:78811498-78811517	Msa0930010:intron	15.0%
!!	TAATTTGGGAAAAAATTATA+TGG	+	chr6_2:78813238-78813257	None:intergenic	15.0%
!!	GAAAACATATAAACATAATT+TGG	+	chr6_2:78813253-78813272	None:intergenic	15.0%
!!!	TTTTACAATTTAAAAAAACG+AGG	-	chr6_2:78813307-78813326	Msa0930010:intron	15.0%
!!!	GTGTTTTAAAAATGATTTAT+TGG	-	chr6_2:78813465-78813484	Msa0930010:intron	15.0%
!!!	ATTGATTTTTAGGTATATTT+GGG	+	chr6_2:78813730-78813749	None:intergenic	15.0%
!!!	AATTAACATGATTGATTTTT+AGG	+	chr6_2:78813740-78813759	None:intergenic	15.0%
!!	AAATTTGTACCAATAAATTA+TGG	-	chr6_2:78814374-78814393	Msa0930010:intron	15.0%
!!!	TTATTACAATATAACTTGTT+AGG	-	chr6_2:78814719-78814738	Msa0930010:intron	15.0%
!!!	AGAAAAAAAATCTAAAATCA+TGG	+	chr6_2:78814799-78814818	None:intergenic	15.0%
!!!	TTATTTTTTAAAGAGCATTT+TGG	-	chr6_2:78814991-78815010	Msa0930010:intron	15.0%
!!	AACCAATTTCTGATAAAATT+AGG	-	chr6_2:78811222-78811241	Msa0930010:intron	20.0%
!!!	ATCCTAATTTTATCAGAAAT+TGG	+	chr6_2:78811227-78811246	None:intergenic	20.0%
!!	CCGAGTTTAAAAAAAAAAAA+AGG	+	chr6_2:78811501-78811520	None:intergenic	20.0%
!!	ATACTTTACTCAATTATACT+TGG	-	chr6_2:78811711-78811730	Msa0930010:CDS	20.0%
!!!	TAATATCTTGTTATGTGTTA+TGG	-	chr6_2:78811862-78811881	Msa0930010:intron	20.0%
!!	TAATGTGACTTCAAAAAATT+AGG	-	chr6_2:78812184-78812203	Msa0930010:intron	20.0%
!!	AAACAAGTAATTAACATATC+AGG	+	chr6_2:78812212-78812231	None:intergenic	20.0%
!!!	TTGGATATAGTGTTTTTTTT+TGG	-	chr6_2:78812517-78812536	Msa0930010:intron	20.0%
!!!	TTCTATCTTTTATATTTCAG+AGG	-	chr6_2:78813060-78813079	Msa0930010:intron	20.0%
!!!	TCTTTATTATGGAATTCTTT+TGG	-	chr6_2:78813107-78813126	Msa0930010:intron	20.0%
!!!	ATTATATATTATTGGCTAGT+TGG	-	chr6_2:78813172-78813191	Msa0930010:intron	20.0%
!!	CTTAAAAGTTAAAACTATCA+AGG	+	chr6_2:78813438-78813457	None:intergenic	20.0%
!!!	GTTTTAACTTTTAAGCATTT+AGG	-	chr6_2:78813443-78813462	Msa0930010:intron	20.0%
!!!	AATGTTTTTTTTTCTTCTTC+AGG	-	chr6_2:78813508-78813527	Msa0930010:intron	20.0%
!!!	TATTTTATTTTTTGGTACAG+AGG	-	chr6_2:78813687-78813706	Msa0930010:intron	20.0%
!!!	TTGATTTTTAGGTATATTTG+GGG	+	chr6_2:78813729-78813748	None:intergenic	20.0%
!!!	GATTGATTTTTAGGTATATT+TGG	+	chr6_2:78813731-78813750	None:intergenic	20.0%
!!	AAAGAAAAGTTTATCATTTG+TGG	+	chr6_2:78813777-78813796	None:intergenic	20.0%
!!	TAAATTTGAGTATATTATGG+AGG	-	chr6_2:78813994-78814013	Msa0930010:intron	20.0%
!!!	TCTTTTAATGAGAAAAATCT+AGG	+	chr6_2:78814084-78814103	None:intergenic	20.0%
!!	GAAAATGTAAGTGTAAATAA+TGG	+	chr6_2:78814142-78814161	None:intergenic	20.0%
!!!	CAACATTTTCCATAATTTAT+TGG	+	chr6_2:78814386-78814405	None:intergenic	20.0%
!!	AAATAATATAATTTGGGCTT+TGG	+	chr6_2:78814455-78814474	None:intergenic	20.0%
!!!	TAAAAGTGATTAGTGTTTTT+TGG	+	chr6_2:78814592-78814611	None:intergenic	20.0%
!!	AAGTTATATTGTAATAAGAC+TGG	+	chr6_2:78814716-78814735	None:intergenic	20.0%
!!	CAAAAGGAAATTATTACAAA+TGG	+	chr6_2:78814839-78814858	None:intergenic	20.0%
!!!	CATAAAATTTTATTGGATGA+TGG	-	chr6_2:78815173-78815192	Msa0930010:CDS	20.0%
!	TTTAAGAGTTAGATTACCTA+TGG	+	chr6_2:78811392-78811411	None:intergenic	25.0%
!!	AAAAAAAAGGTATAAGTGGA+TGG	+	chr6_2:78811488-78811507	None:intergenic	25.0%
!	AGAGAAACAATAGTGATAAA+AGG	-	chr6_2:78812070-78812089	Msa0930010:intron	25.0%
!	TAACAATAATTGGGAACTAT+CGG	+	chr6_2:78812457-78812476	None:intergenic	25.0%
!	AGTGCTATACTATATTCAAA+AGG	+	chr6_2:78812571-78812590	None:intergenic	25.0%
!	TCAAAAATCAAGATACGATA+CGG	+	chr6_2:78812798-78812817	None:intergenic	25.0%
!!	ATTATAAATTGGTTGGTGTT+TGG	-	chr6_2:78812995-78813014	Msa0930010:intron	25.0%
!!	TATTATTGCAGTACTTTTAC+AGG	-	chr6_2:78813130-78813149	Msa0930010:intron	25.0%
!	TTGAATCTTGTGTTTAGTAT+AGG	-	chr6_2:78813646-78813665	Msa0930010:intron	25.0%
!!!	TGATTTTTAGGTATATTTGG+GGG	+	chr6_2:78813728-78813747	None:intergenic	25.0%
!!!	TTGTCTTTTGTTTTAAGGAA+GGG	+	chr6_2:78814198-78814217	None:intergenic	25.0%
!	TTATGTAAATGACACATTCA+AGG	+	chr6_2:78814355-78814374	None:intergenic	25.0%
!!	AATTTCCTTTTGTTGATACT+TGG	-	chr6_2:78814847-78814866	Msa0930010:intron	25.0%
!	GAATTATCTCGCTTAAAATA+AGG	+	chr6_2:78814910-78814929	None:intergenic	25.0%
!	AATCACATACTCAACAAAAA+TGG	+	chr6_2:78815065-78815084	None:intergenic	25.0%
!!!	AAAATTTTATTGGATGATGG+TGG	-	chr6_2:78815176-78815195	Msa0930010:CDS	25.0%
	TAATCGAAGATAGAATCGTA+AGG	+	chr6_2:78810951-78810970	None:intergenic	30.0%
	TTGTTAGCCATTCTAAATAG+TGG	-	chr6_2:78811084-78811103	Msa0930010:CDS	30.0%
	TGTTAGCCATTCTAAATAGT+GGG	-	chr6_2:78811085-78811104	Msa0930010:CDS	30.0%
	TTCTATCCCACTATTTAGAA+TGG	+	chr6_2:78811094-78811113	None:intergenic	30.0%
	TAGGATTATTATCTGACACA+TGG	-	chr6_2:78811241-78811260	Msa0930010:intron	30.0%
	TTACCTATGGATTTAGTGAA+AGG	+	chr6_2:78811379-78811398	None:intergenic	30.0%
	CGTGTATCAATTCAAGTATA+GGG	+	chr6_2:78811454-78811473	None:intergenic	30.0%
	ACGTGTATCAATTCAAGTAT+AGG	+	chr6_2:78811455-78811474	None:intergenic	30.0%
	AAGTATAAGAACACCCATTT+GGG	+	chr6_2:78811697-78811716	None:intergenic	30.0%
	AAAGTATAAGAACACCCATT+TGG	+	chr6_2:78811698-78811717	None:intergenic	30.0%
	TGACAAACATACGTTAAAAC+TGG	+	chr6_2:78811824-78811843	None:intergenic	30.0%
	GAAAGAGAGATTACATGAAA+TGG	-	chr6_2:78811999-78812018	Msa0930010:intron	30.0%
!!	GAGTTTGATACTTAAGTTGA+TGG	-	chr6_2:78812038-78812057	Msa0930010:intron	30.0%
	AGAGAATAGACTGACAAAAT+TGG	-	chr6_2:78812105-78812124	Msa0930010:intron	30.0%
	TAGCGGTGTAAGATAATTAT+CGG	+	chr6_2:78812427-78812446	None:intergenic	30.0%
	AACAATAATTGGGAACTATC+GGG	+	chr6_2:78812456-78812475	None:intergenic	30.0%
!!!	AGTACTGATGTGTTCTTTTT+TGG	-	chr6_2:78812498-78812517	Msa0930010:intron	30.0%
!	TGAATATAGTATAGCACTGA+TGG	-	chr6_2:78812573-78812592	Msa0930010:intron	30.0%
!	ATTTTTCCGTATCAACCTAT+CGG	-	chr6_2:78812819-78812838	Msa0930010:intron	30.0%
	CATAATAAAGATGCAAGTTC+TGG	+	chr6_2:78813098-78813117	None:intergenic	30.0%
	CAGAACTTGCATCTTTATTA+TGG	-	chr6_2:78813096-78813115	Msa0930010:intron	30.0%
!!	ACATAAGAGAAAAGTGTTAG+AGG	+	chr6_2:78813839-78813858	None:intergenic	30.0%
!	TATGTTTTCACTATAGTGTG+TGG	-	chr6_2:78813854-78813873	Msa0930010:intron	30.0%
!!!	CTTGTCTTTTGTTTTAAGGA+AGG	+	chr6_2:78814199-78814218	None:intergenic	30.0%
!!!	GTGACTTGTCTTTTGTTTTA+AGG	+	chr6_2:78814203-78814222	None:intergenic	30.0%
	AACCTTAAATACTCAAACTG+TGG	+	chr6_2:78814225-78814244	None:intergenic	30.0%
!	TATTTAAGGTTTGCAAGTCT+TGG	-	chr6_2:78814234-78814253	Msa0930010:intron	30.0%
	TTCATGTAATACCTTCACTA+AGG	+	chr6_2:78814271-78814290	None:intergenic	30.0%
!!	TGTGTTATTCTTAGTTTTCG+TGG	+	chr6_2:78814413-78814432	None:intergenic	30.0%
!!!	TTGTAGTTTTATCATGCTCT+TGG	-	chr6_2:78814656-78814675	Msa0930010:intron	30.0%
	GAATACCAAGTATCAACAAA+AGG	+	chr6_2:78814855-78814874	None:intergenic	30.0%
	TTATAACACCAAAGAAGTCA+TGG	-	chr6_2:78814880-78814899	Msa0930010:intron	30.0%
	TATAACACCAAAGAAGTCAT+GGG	-	chr6_2:78814881-78814900	Msa0930010:intron	30.0%
	GATTGCTGAGTTCAATAACA+AGG	+	chr6_2:78810888-78810907	None:intergenic	35.0%
	CTTTCAAGAGGACACAAATA+GGG	+	chr6_2:78811309-78811328	None:intergenic	35.0%
	ACTTTCAAGAGGACACAAAT+AGG	+	chr6_2:78811310-78811329	None:intergenic	35.0%
	ATGCCTTTCACTAAATCCAT+AGG	-	chr6_2:78811373-78811392	Msa0930010:intron	35.0%
!	AGAGGAGCACATTTAGTTTA+GGG	+	chr6_2:78811427-78811446	None:intergenic	35.0%
	AGTATAAGAACACCCATTTG+GGG	+	chr6_2:78811696-78811715	None:intergenic	35.0%
!	CTCTGAGAGGTATAAAAATG+AGG	-	chr6_2:78811973-78811992	Msa0930010:intron	35.0%
	AGTCAACCAATCTAAGTTGT+TGG	-	chr6_2:78812143-78812162	Msa0930010:intron	35.0%
	AACCAATCTAAGTTGTTGGA+TGG	-	chr6_2:78812147-78812166	Msa0930010:intron	35.0%
	TTCCATCCAACAACTTAGAT+TGG	+	chr6_2:78812152-78812171	None:intergenic	35.0%
!!!	ACATCCATTTTGAAGTATCG+GGG	+	chr6_2:78812265-78812284	None:intergenic	35.0%
!!!	GACATCCATTTTGAAGTATC+GGG	+	chr6_2:78812266-78812285	None:intergenic	35.0%
!!!	CGACATCCATTTTGAAGTAT+CGG	+	chr6_2:78812267-78812286	None:intergenic	35.0%
	ATACTCTCTTGATACGTATC+GGG	+	chr6_2:78812335-78812354	None:intergenic	35.0%
	GATACTCTCTTGATACGTAT+CGG	+	chr6_2:78812336-78812355	None:intergenic	35.0%
!	TGATACGTATCAGGAAGTAT+CGG	+	chr6_2:78812395-78812414	None:intergenic	35.0%
	ACAATAATTGGGAACTATCG+GGG	+	chr6_2:78812455-78812474	None:intergenic	35.0%
	AAAAACGAGGCATGATTATG+AGG	-	chr6_2:78813320-78813339	Msa0930010:intron	35.0%
	AAAACGAGGCATGATTATGA+GGG	-	chr6_2:78813321-78813340	Msa0930010:intron	35.0%
	ACAAGGATGTTGTTCTTGAA+TGG	-	chr6_2:78813891-78813910	Msa0930010:intron	35.0%
	AGGAAGGGATACAAATACAA+AGG	+	chr6_2:78814183-78814202	None:intergenic	35.0%
	CACCACAGTTTGAGTATTTA+AGG	-	chr6_2:78814220-78814239	Msa0930010:intron	35.0%
!	ATCGTGGTTTTTGTGGAATT+AGG	-	chr6_2:78814521-78814540	Msa0930010:intron	35.0%
	CTAGTTAAGAGCCAGATAAT+TGG	-	chr6_2:78814628-78814647	Msa0930010:intron	35.0%
	CTACAAGTCAACCAATTATC+TGG	+	chr6_2:78814642-78814661	None:intergenic	35.0%
	TGTTGATACTTGGTATTCAC+AGG	-	chr6_2:78814857-78814876	Msa0930010:intron	35.0%
!!	TTTATTGGATGATGGTGGTT+TGG	-	chr6_2:78815181-78815200	Msa0930010:CDS	35.0%
	TTCTTCATTGTGAGCGAATG+AGG	+	chr6_2:78810787-78810806	None:intergenic	40.0%
	AGATAGAATCGTAAGGACCT+TGG	+	chr6_2:78810944-78810963	None:intergenic	40.0%
	TTATCTGACACATGGATCAC+AGG	-	chr6_2:78811249-78811268	Msa0930010:intron	40.0%
	CATCGGTAGAAACTTTCAAG+AGG	+	chr6_2:78811321-78811340	None:intergenic	40.0%
!	GAGAGGAGCACATTTAGTTT+AGG	+	chr6_2:78811428-78811447	None:intergenic	40.0%
!	ATTTCCTCTGGTGCCAATTT+CGG	+	chr6_2:78811615-78811634	None:intergenic	40.0%
	GATACTTCCTGATACGTATC+AGG	-	chr6_2:78812394-78812413	Msa0930010:intron	40.0%
	ATACTCTCCTGATACGTATC+AGG	+	chr6_2:78812404-78812423	None:intergenic	40.0%
	CAATTACTTTCTGTGAAGCC+CGG	+	chr6_2:78812876-78812895	None:intergenic	40.0%
	AACATTACTTAGCGCGTTCA+GGG	+	chr6_2:78813494-78813513	None:intergenic	40.0%
	AAACATTACTTAGCGCGTTC+AGG	+	chr6_2:78813495-78813514	None:intergenic	40.0%
	GATTGTGCTAGAGTAAGAGT+CGG	+	chr6_2:78813566-78813585	None:intergenic	40.0%
	TAACGTTCTTGCACTACTTC+AGG	-	chr6_2:78813598-78813617	Msa0930010:intron	40.0%
	TTTGCAAGTCTTGGAGTCAT+TGG	-	chr6_2:78814243-78814262	Msa0930010:intron	40.0%
!	TTTTGTGGAATTAGGCTTCG+TGG	-	chr6_2:78814529-78814548	Msa0930010:intron	40.0%
	AAGGTAACCCATGACTTCTT+TGG	+	chr6_2:78814891-78814910	None:intergenic	40.0%
	TCCATTGTGCTTAAGCAACA+TGG	-	chr6_2:78814928-78814947	Msa0930010:intron	40.0%
!	TCCATGTTGCTTAAGCACAA+TGG	+	chr6_2:78814932-78814951	None:intergenic	40.0%
	TGCTTAAGCAACATGGAGAT+TGG	-	chr6_2:78814935-78814954	Msa0930010:intron	40.0%
!	TTTTGCAGTACGTCGTGTTT+TGG	-	chr6_2:78815231-78815250	Msa0930010:CDS	40.0%
!!	GATTGAGTAGAAGCACCAAG+AGG	+	chr6_2:78810829-78810848	None:intergenic	45.0%
	TTCCATGCAAGCCATCGTTT+GGG	+	chr6_2:78810863-78810882	None:intergenic	45.0%
!!	AGAGCGTTTTCTCGAAGATC+AGG	+	chr6_2:78810910-78810929	None:intergenic	45.0%
	TGTGATCCATGTTGTGACGT+TGG	-	chr6_2:78811118-78811137	Msa0930010:CDS	45.0%
	GATTTGCCAACGTCACAACA+TGG	+	chr6_2:78811127-78811146	None:intergenic	45.0%
	TGTTGTGACGTTGGCAAATC+AGG	-	chr6_2:78811127-78811146	Msa0930010:CDS	45.0%
	ATTCAAGTATAGGGCGAGAG+AGG	+	chr6_2:78811445-78811464	None:intergenic	45.0%
	TAAACTCGGTATCCGATCCA+AGG	-	chr6_2:78811512-78811531	Msa0930010:intron	45.0%
!	GCTTTGCTATGGCTTAGAAC+AGG	+	chr6_2:78811574-78811593	None:intergenic	45.0%
	AGCCATAGCAAAGCTCTGTA+TGG	-	chr6_2:78811580-78811599	Msa0930010:intron	45.0%
	GTCCATACAGAGCTTTGCTA+TGG	+	chr6_2:78811585-78811604	None:intergenic	45.0%
	ATGTCAGGTTCGATTTCCTC+TGG	+	chr6_2:78811627-78811646	None:intergenic	45.0%
	ATCGAACCTGACATCTTGAG+AGG	-	chr6_2:78811633-78811652	Msa0930010:intron	45.0%
!!	TAGTGGTTGGTTTGGGATCT+TGG	+	chr6_2:78811667-78811686	None:intergenic	45.0%
	AAGATCCCAAACCAACCACT+AGG	-	chr6_2:78811666-78811685	Msa0930010:intron	45.0%
!!	GTTGACCTAGTGGTTGGTTT+GGG	+	chr6_2:78811674-78811693	None:intergenic	45.0%
	TCACACTTCATGACTCTGAG+AGG	-	chr6_2:78811960-78811979	Msa0930010:intron	45.0%
	GAAGCCCCGATACTTCAAAA+TGG	-	chr6_2:78812258-78812277	Msa0930010:intron	45.0%
!!	GGGAAGTATCAGACAGGTAT+CGG	+	chr6_2:78812315-78812334	None:intergenic	45.0%
	ATGTGCTACGAGCTTATGAC+TGG	-	chr6_2:78812676-78812695	Msa0930010:intron	45.0%
!!	ACTGCACCGATAGGTTGATA+CGG	+	chr6_2:78812828-78812847	None:intergenic	45.0%
	TCCGTATCGTATCTCGTATC+CGG	-	chr6_2:78812854-78812873	Msa0930010:intron	45.0%
!!	TGGCATCTCACTCTGAAACA+AGG	-	chr6_2:78813874-78813893	Msa0930010:intron	45.0%
	CTTTGGCAGCAATCATGGTA+GGG	+	chr6_2:78814438-78814457	None:intergenic	45.0%
	CACGATGAGACACAATGCAA+CGG	+	chr6_2:78814507-78814526	None:intergenic	45.0%
!	GTGTCTCATCGTGGTTTTTG+TGG	-	chr6_2:78814514-78814533	Msa0930010:intron	45.0%
	AATTAGGCTTCGTGGCATCT+AGG	-	chr6_2:78814537-78814556	Msa0930010:intron	45.0%
!!	AAAAAATAAAATTTAATCTT+CGG	+	chr6_2:78812358-78812377	None:intergenic	5.0%
	TCTTCGTCTGTAGCTCCTCT+TGG	-	chr6_2:78810811-78810830	Msa0930010:CDS	50.0%
	AAGAACCACTGCCCAAACGA+TGG	-	chr6_2:78810849-78810868	Msa0930010:CDS	50.0%
	GTTCCATGCAAGCCATCGTT+TGG	+	chr6_2:78810864-78810883	None:intergenic	50.0%
	ATGGACTTGCCCACCGAAAT+TGG	-	chr6_2:78811599-78811618	Msa0930010:intron	50.0%
	TGTGCTCCTCTCAAGATGTC+AGG	+	chr6_2:78811642-78811661	None:intergenic	50.0%
!	GGTTGACCTAGTGGTTGGTT+TGG	+	chr6_2:78811675-78811694	None:intergenic	50.0%
!	TTTGGGGTTGACCTAGTGGT+TGG	+	chr6_2:78811680-78811699	None:intergenic	50.0%
	ACCACTAGGTCAACCCCAAA+TGG	-	chr6_2:78811680-78811699	Msa0930010:intron	50.0%
	CCACTAGGTCAACCCCAAAT+GGG	-	chr6_2:78811681-78811700	Msa0930010:intron	50.0%
!!	TATCAGACAGGTATCGGTGC+AGG	+	chr6_2:78812309-78812328	None:intergenic	50.0%
!!	CGTATCGGGAAGTATCAGAC+AGG	+	chr6_2:78812321-78812340	None:intergenic	50.0%
	AATTGGGAACTATCGGGGCA+AGG	+	chr6_2:78812450-78812469	None:intergenic	50.0%
!	GGATACGATACTGCACCGAT+AGG	+	chr6_2:78812837-78812856	None:intergenic	50.0%
	CCCGGATACGAGATACGATA+CGG	+	chr6_2:78812858-78812877	None:intergenic	50.0%
	CCGTATCGTATCTCGTATCC+GGG	-	chr6_2:78812855-78812874	Msa0930010:intron	50.0%
	TGTGCTAGAGTAAGAGTCGG+TGG	+	chr6_2:78813563-78813582	None:intergenic	50.0%
	AGTCATTGGCGCCTTAGTGA+AGG	-	chr6_2:78814257-78814276	Msa0930010:intron	50.0%
	GCTTTGGCAGCAATCATGGT+AGG	+	chr6_2:78814439-78814458	None:intergenic	50.0%
!	TTGGGCTTTGGCAGCAATCA+TGG	+	chr6_2:78814443-78814462	None:intergenic	50.0%
	CGTTGCATTGTGTCTCATCG+TGG	-	chr6_2:78814505-78814524	Msa0930010:intron	50.0%
!	TGCCCAAACGATGGCTTGCA+TGG	-	chr6_2:78810858-78810877	Msa0930010:intron	55.0%
	TGGTCAGTCGGTCCTTGGAT+CGG	+	chr6_2:78811527-78811546	None:intergenic	55.0%
!!	GAGCAGTGGGATTGGTCAGT+CGG	+	chr6_2:78811539-78811558	None:intergenic	55.0%
	CCAATCCCACTGCTCACTTG+CGG	-	chr6_2:78811544-78811563	Msa0930010:intron	55.0%
	CAATCCCACTGCTCACTTGC+GGG	-	chr6_2:78811545-78811564	Msa0930010:intron	55.0%
	AATCCCACTGCTCACTTGCG+GGG	-	chr6_2:78811546-78811565	Msa0930010:intron	55.0%
!	CCTCTGGTGCCAATTTCGGT+GGG	+	chr6_2:78811611-78811630	None:intergenic	55.0%
!	TCCTCTGGTGCCAATTTCGG+TGG	+	chr6_2:78811612-78811631	None:intergenic	55.0%
!	CCCATTTGGGGTTGACCTAG+TGG	+	chr6_2:78811684-78811703	None:intergenic	55.0%
!!	AGGTATCGGTGCAGGATACG+CGG	+	chr6_2:78812301-78812320	None:intergenic	55.0%
	GAACTATCGGGGCAAGGTAG+CGG	+	chr6_2:78812444-78812463	None:intergenic	55.0%
	GCAAGCCATCGTTTGGGCAG+TGG	+	chr6_2:78810857-78810876	None:intergenic	60.0%
	CGCTCTTCGTGTGCTCTCCA+AGG	-	chr6_2:78810924-78810943	Msa0930010:intron	60.0%
!!	GGGATTGGTCAGTCGGTCCT+TGG	+	chr6_2:78811532-78811551	None:intergenic	60.0%
	CCGCAAGTGAGCAGTGGGAT+TGG	+	chr6_2:78811547-78811566	None:intergenic	60.0%
	ATCCCACTGCTCACTTGCGG+GGG	-	chr6_2:78811547-78811566	Msa0930010:intron	60.0%
	CCCACCGAAATTGGCACCAG+AGG	-	chr6_2:78811608-78811627	Msa0930010:intron	60.0%
	TATCGGTGCAGGATACGCGG+AGG	+	chr6_2:78812298-78812317	None:intergenic	60.0%
	TCCCACTGCTCACTTGCGGG+GGG	-	chr6_2:78811548-78811567	Msa0930010:intron	65.0%
	GCCCCCCGCAAGTGAGCAGT+GGG	+	chr6_2:78811552-78811571	None:intergenic	70.0%
	GGCCCCCCGCAAGTGAGCAG+TGG	+	chr6_2:78811553-78811572	None:intergenic	75.0%

Chromosome	Type	Strat	End	Strand	Name
chr6_2	gene	78810769	78815259	78810769	ID=Msa0930010;Name=Msa0930010
chr6_2	mRNA	78810769	78815259	78810769	ID=Msa0930010-mRNA-1;Parent=Msa0930010;Name=Msa0930010-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0\|0\|0\|1\|0.66\|0.71\|7\|0\|259
chr6_2	exon	78815083	78815259	78815083	ID=Msa0930010-mRNA-1:exon:13402;Parent=Msa0930010-mRNA-1
chr6_2	exon	78812877	78812948	78812877	ID=Msa0930010-mRNA-1:exon:13401;Parent=Msa0930010-mRNA-1
chr6_2	exon	78812409	78812498	78812409	ID=Msa0930010-mRNA-1:exon:13400;Parent=Msa0930010-mRNA-1
chr6_2	exon	78812116	78812158	78812116	ID=Msa0930010-mRNA-1:exon:13399;Parent=Msa0930010-mRNA-1
chr6_2	exon	78811707	78811856	78811707	ID=Msa0930010-mRNA-1:exon:13398;Parent=Msa0930010-mRNA-1
chr6_2	exon	78811007	78811149	78811007	ID=Msa0930010-mRNA-1:exon:13397;Parent=Msa0930010-mRNA-1
chr6_2	exon	78810769	78810873	78810769	ID=Msa0930010-mRNA-1:exon:13396;Parent=Msa0930010-mRNA-1
chr6_2	CDS	78815083	78815259	78815083	ID=Msa0930010-mRNA-1:cds;Parent=Msa0930010-mRNA-1
chr6_2	CDS	78812877	78812948	78812877	ID=Msa0930010-mRNA-1:cds;Parent=Msa0930010-mRNA-1
chr6_2	CDS	78812409	78812498	78812409	ID=Msa0930010-mRNA-1:cds;Parent=Msa0930010-mRNA-1
chr6_2	CDS	78812116	78812158	78812116	ID=Msa0930010-mRNA-1:cds;Parent=Msa0930010-mRNA-1
chr6_2	CDS	78811707	78811856	78811707	ID=Msa0930010-mRNA-1:cds;Parent=Msa0930010-mRNA-1
chr6_2	CDS	78811007	78811149	78811007	ID=Msa0930010-mRNA-1:cds;Parent=Msa0930010-mRNA-1
chr6_2	CDS	78810769	78810873	78810769	ID=Msa0930010-mRNA-1:cds;Parent=Msa0930010-mRNA-1

Gene Sequence

>Msa0930010

ATGGACAAAATTTCTCCTCATTCGCTCACAATGAAGAATGAATCTTCGTCTGTAGCTCCTCTTGGTGCTTCTACTCAATCAAGAACCACTGCCCAAACGATGGCTTGCATGGAACACCTTGTTATTGAACTCAGCAATCCTGATCTTCGAGAAAACGCTCTTCGTGTGCTCTCCAAGAGGTATGAGTTATCTCCAGAACTTGCATCTTTATTATGGAATTCTTTTGGTATTATTGCAGTACTTTTACAGGAAATAACTTCAATATACTGTAGTCTTTCACCACCGACTCTTACTCTAGCACAATCAACTCGAGTGTGTAACGTTCTTGCACTACTTCAGTGTGTGGCATCTCACTCTGAAACAAGGATGTTGTTCTTGAATGCTAGCATACCTTTGTATTTGTATCCCTTCCTTAAAACAAAAGACAAGTCACCACAGTTTGAGTATTTAAGGTTTGCAAGTCTTGGAGTCATTGGCGCCTTAGTGAAGGTATTACATGAAAAGAAAATCATTTTTAATTACAAAAAATATTGTTATAACACCAAAGAAGTCATGGGTTACCTTATTTTAAGCGAGATAATTCCATTGTGCTTAAGCAACATGGAGATTGGAAATGAAATATCTAAAACTGTTAGTTTCTATTCTTATTTTTTAAAGAGCATTTTGGTAAATGAAACTGCAACATTTATAATGCATAAAATTTTATTGGATGATGGTGGTTTGGCTTACGTTTGTGCTACAGCAGAGCGCTTTTTGCAGTACGTCGTGTTTTGGACATGA

Protein sequence

>Msa0930010

MDKISPHSLTMKNESSSVAPLGASTQSRTTAQTMACMEHLVIELSNPDLRENALRVLSKRYELSPELASLLWNSFGIIAVLLQEITSIYCSLSPPTLTLAQSTRVCNVLALLQCVASHSETRMLFLNASIPLYLYPFLKTKDKSPQFEYLRFASLGVIGALVKVLHEKKIIFNYKKYCYNTKEVMGYLILSEIIPLCLSNMEIGNEISKTVSFYSYFLKSILVNETATFIMHKILLDDGGLAYVCATAERFLQYVVFWT*