Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0932310 | sp|Q9ZQ31|STY13_ARATH | 43.284 | 134 | 43 | 4 | 3 | 112 | 260 | 384 | 1.11e-25 | 104 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0932310 | A0A072U5Y5 | 85.075 | 201 | 7 | 1 | 1 | 178 | 114 | 314 | 6.34e-120 | 350 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0932310 | MtrunA17_Chr6g0449241 | 85.427 | 199 | 6 | 1 | 3 | 178 | 154 | 352 | 6.21e-122 | 348 |
| Msa0932310 | MtrunA17_Chr3g0116981 | 66.332 | 199 | 44 | 1 | 3 | 178 | 154 | 352 | 1.79e-92 | 273 |
| Msa0932310 | MtrunA17_Chr7g0244621 | 65.000 | 140 | 25 | 1 | 3 | 118 | 173 | 312 | 6.19e-58 | 185 |
| Msa0932310 | MtrunA17_Chr3g0090261 | 44.030 | 134 | 42 | 3 | 3 | 112 | 212 | 336 | 9.80e-28 | 106 |
| Msa0932310 | MtrunA17_Chr3g0143531 | 45.600 | 125 | 36 | 2 | 13 | 113 | 159 | 275 | 1.12e-26 | 102 |
| Msa0932310 | MtrunA17_Chr5g0403721 | 38.562 | 153 | 65 | 4 | 3 | 128 | 113 | 263 | 2.43e-25 | 100 |
| Msa0932310 | MtrunA17_Chr1g0211611 | 41.985 | 131 | 44 | 2 | 6 | 112 | 428 | 550 | 2.48e-24 | 99.0 |
| Msa0932310 | MtrunA17_Chr5g0406251 | 39.695 | 131 | 47 | 2 | 6 | 112 | 422 | 544 | 9.16e-23 | 94.4 |
| Msa0932310 | MtrunA17_Chr1g0157231 | 48.913 | 92 | 39 | 1 | 6 | 97 | 272 | 355 | 1.62e-22 | 92.8 |
| Msa0932310 | MtrunA17_Chr4g0047211 | 32.432 | 148 | 68 | 2 | 6 | 129 | 173 | 312 | 1.77e-22 | 92.0 |
| Msa0932310 | MtrunA17_Chr4g0047191 | 32.432 | 148 | 68 | 2 | 6 | 129 | 178 | 317 | 1.79e-22 | 92.4 |
| Msa0932310 | MtrunA17_Chr4g0075541 | 36.250 | 160 | 69 | 3 | 3 | 138 | 217 | 367 | 4.02e-22 | 91.7 |
| Msa0932310 | MtrunA17_Chr2g0282321 | 33.333 | 141 | 61 | 3 | 4 | 120 | 294 | 425 | 5.10e-22 | 92.0 |
| Msa0932310 | MtrunA17_Chr4g0047201 | 31.915 | 141 | 63 | 3 | 4 | 120 | 333 | 464 | 7.39e-22 | 91.7 |
| Msa0932310 | MtrunA17_Chr4g0059121 | 39.130 | 138 | 52 | 3 | 6 | 119 | 190 | 319 | 9.31e-22 | 90.1 |
| Msa0932310 | MtrunA17_Chr3g0117731 | 39.098 | 133 | 48 | 3 | 4 | 112 | 188 | 311 | 5.48e-21 | 88.2 |
| Msa0932310 | MtrunA17_Chr1g0202101 | 50.000 | 86 | 35 | 1 | 6 | 91 | 410 | 487 | 1.87e-19 | 84.7 |
| Msa0932310 | MtrunA17_Chr5g0427651 | 32.653 | 147 | 86 | 5 | 6 | 149 | 777 | 913 | 2.35e-13 | 67.4 |
| Msa0932310 | MtrunA17_Chr3g0132791 | 30.323 | 155 | 70 | 5 | 6 | 135 | 784 | 925 | 7.42e-13 | 65.9 |
| Msa0932310 | MtrunA17_Chr1g0191171 | 33.333 | 132 | 55 | 4 | 6 | 112 | 818 | 941 | 8.54e-13 | 65.9 |
| Msa0932310 | MtrunA17_Chr1g0151541 | 33.071 | 127 | 52 | 4 | 13 | 114 | 799 | 917 | 1.30e-12 | 65.1 |
| Msa0932310 | MtrunA17_Chr6g0482711 | 31.902 | 163 | 89 | 6 | 6 | 161 | 789 | 936 | 1.68e-12 | 64.7 |
| Msa0932310 | MtrunA17_Chr8g0388891 | 36.937 | 111 | 62 | 4 | 3 | 112 | 263 | 366 | 4.82e-12 | 63.2 |
| Msa0932310 | MtrunA17_Chr2g0294351 | 32.331 | 133 | 55 | 5 | 6 | 112 | 595 | 718 | 1.47e-11 | 62.0 |
| Msa0932310 | MtrunA17_Chr4g0068411 | 33.333 | 123 | 67 | 5 | 6 | 121 | 589 | 703 | 2.94e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0932310 | AT5G50180.1 | 66.667 | 198 | 43 | 1 | 4 | 178 | 149 | 346 | 1.12e-92 | 273 |
| Msa0932310 | AT5G40540.3 | 68.528 | 197 | 36 | 3 | 4 | 174 | 58 | 254 | 9.90e-86 | 253 |
| Msa0932310 | AT5G40540.2 | 68.528 | 197 | 36 | 3 | 4 | 174 | 79 | 275 | 1.89e-85 | 253 |
| Msa0932310 | AT5G40540.1 | 68.528 | 197 | 36 | 3 | 4 | 174 | 155 | 351 | 3.33e-84 | 252 |
| Msa0932310 | AT3G27560.1 | 66.000 | 200 | 35 | 4 | 4 | 172 | 155 | 352 | 2.63e-81 | 245 |
| Msa0932310 | AT5G40540.4 | 92.553 | 94 | 7 | 0 | 4 | 97 | 155 | 248 | 2.82e-59 | 186 |
| Msa0932310 | AT5G01850.1 | 66.418 | 134 | 21 | 1 | 3 | 112 | 146 | 279 | 9.51e-58 | 184 |
| Msa0932310 | AT5G01850.2 | 66.418 | 134 | 21 | 1 | 3 | 112 | 170 | 303 | 2.38e-57 | 184 |
| Msa0932310 | AT5G66710.1 | 50.000 | 140 | 47 | 2 | 3 | 120 | 200 | 338 | 1.16e-37 | 134 |
| Msa0932310 | AT3G50720.1 | 53.333 | 105 | 45 | 2 | 4 | 108 | 178 | 278 | 6.07e-31 | 115 |
| Msa0932310 | AT3G50730.1 | 44.156 | 154 | 52 | 5 | 4 | 127 | 165 | 314 | 9.03e-29 | 109 |
| Msa0932310 | AT2G24360.1 | 43.284 | 134 | 43 | 4 | 3 | 112 | 260 | 384 | 1.13e-26 | 104 |
| Msa0932310 | AT4G31170.7 | 43.284 | 134 | 43 | 3 | 3 | 112 | 261 | 385 | 1.32e-26 | 104 |
| Msa0932310 | AT4G31170.6 | 43.284 | 134 | 43 | 3 | 3 | 112 | 261 | 385 | 1.32e-26 | 104 |
| Msa0932310 | AT4G31170.5 | 43.284 | 134 | 43 | 3 | 3 | 112 | 261 | 385 | 1.32e-26 | 104 |
| Msa0932310 | AT4G31170.1 | 43.284 | 134 | 43 | 3 | 3 | 112 | 261 | 385 | 1.32e-26 | 104 |
| Msa0932310 | AT4G31170.2 | 43.284 | 134 | 43 | 3 | 3 | 112 | 261 | 385 | 1.32e-26 | 104 |
| Msa0932310 | AT4G31170.3 | 43.284 | 134 | 43 | 3 | 3 | 112 | 261 | 385 | 1.32e-26 | 104 |
| Msa0932310 | AT4G31170.8 | 43.284 | 134 | 43 | 3 | 3 | 112 | 261 | 385 | 1.32e-26 | 104 |
| Msa0932310 | AT4G35780.1 | 39.568 | 139 | 52 | 2 | 6 | 120 | 419 | 549 | 3.07e-25 | 101 |
| Msa0932310 | AT4G38470.1 | 44.262 | 122 | 54 | 2 | 6 | 121 | 417 | 530 | 6.02e-25 | 100 |
| Msa0932310 | AT4G38470.2 | 44.262 | 122 | 54 | 2 | 6 | 121 | 417 | 530 | 6.05e-25 | 100 |
| Msa0932310 | AT2G17700.1 | 39.568 | 139 | 52 | 2 | 6 | 120 | 413 | 543 | 1.60e-24 | 99.8 |
| Msa0932310 | AT4G38470.3 | 51.087 | 92 | 37 | 1 | 6 | 97 | 417 | 500 | 7.46e-23 | 94.7 |
| Msa0932310 | AT1G62400.1 | 40.146 | 137 | 49 | 3 | 3 | 115 | 216 | 343 | 5.37e-22 | 91.7 |
| Msa0932310 | AT5G58950.1 | 32.090 | 134 | 59 | 2 | 6 | 115 | 341 | 466 | 2.12e-19 | 85.1 |
| Msa0932310 | AT3G46930.1 | 37.736 | 106 | 51 | 4 | 4 | 103 | 296 | 392 | 1.72e-15 | 73.6 |
| Msa0932310 | AT3G46930.2 | 37.736 | 106 | 51 | 4 | 4 | 103 | 331 | 427 | 1.90e-15 | 73.6 |
| Msa0932310 | AT3G46930.5 | 38.947 | 95 | 48 | 3 | 4 | 97 | 296 | 381 | 3.16e-15 | 72.8 |
| Msa0932310 | AT3G46930.6 | 38.947 | 95 | 48 | 3 | 4 | 97 | 235 | 320 | 3.30e-15 | 72.4 |
| Msa0932310 | AT3G46930.4 | 38.947 | 95 | 48 | 3 | 4 | 97 | 331 | 416 | 3.37e-15 | 72.8 |
| Msa0932310 | AT3G46930.3 | 38.947 | 95 | 48 | 3 | 4 | 97 | 331 | 416 | 3.61e-15 | 72.8 |
| Msa0932310 | AT5G49470.7 | 34.091 | 132 | 54 | 4 | 6 | 112 | 493 | 616 | 2.05e-14 | 70.9 |
| Msa0932310 | AT5G49470.4 | 34.091 | 132 | 54 | 4 | 6 | 112 | 594 | 717 | 2.15e-14 | 70.9 |
| Msa0932310 | AT5G49470.2 | 34.091 | 132 | 54 | 4 | 6 | 112 | 681 | 804 | 2.21e-14 | 70.9 |
| Msa0932310 | AT5G49470.3 | 34.091 | 132 | 54 | 4 | 6 | 112 | 620 | 743 | 2.38e-14 | 70.5 |
| Msa0932310 | AT5G49470.1 | 34.091 | 132 | 54 | 4 | 6 | 112 | 333 | 456 | 3.04e-14 | 70.1 |
| Msa0932310 | AT1G67890.1 | 41.758 | 91 | 45 | 2 | 6 | 96 | 616 | 698 | 1.16e-13 | 68.6 |
| Msa0932310 | AT1G67890.4 | 41.758 | 91 | 45 | 2 | 6 | 96 | 488 | 570 | 1.23e-13 | 68.6 |
| Msa0932310 | AT1G67890.3 | 41.758 | 91 | 45 | 2 | 6 | 96 | 616 | 698 | 1.33e-13 | 68.6 |
| Msa0932310 | AT1G67890.2 | 41.758 | 91 | 45 | 2 | 6 | 96 | 616 | 698 | 1.33e-13 | 68.6 |
| Msa0932310 | AT3G63260.1 | 31.496 | 127 | 54 | 3 | 11 | 112 | 244 | 362 | 1.42e-13 | 68.2 |
| Msa0932310 | AT1G08720.1 | 33.333 | 132 | 55 | 4 | 6 | 112 | 798 | 921 | 2.33e-13 | 67.8 |
| Msa0932310 | AT3G63260.2 | 40.000 | 90 | 45 | 2 | 11 | 99 | 244 | 325 | 2.73e-13 | 67.0 |
| Msa0932310 | AT4G24480.2 | 30.061 | 163 | 76 | 5 | 6 | 143 | 800 | 949 | 3.77e-13 | 67.0 |
| Msa0932310 | AT4G24480.1 | 30.061 | 163 | 76 | 5 | 6 | 143 | 805 | 954 | 3.88e-13 | 67.0 |
| Msa0932310 | AT4G24480.3 | 30.573 | 157 | 71 | 5 | 6 | 137 | 800 | 943 | 7.28e-13 | 66.2 |
| Msa0932310 | AT5G11850.1 | 30.597 | 134 | 60 | 4 | 6 | 114 | 738 | 863 | 8.40e-13 | 66.2 |
| Msa0932310 | AT3G06620.1 | 40.426 | 94 | 47 | 3 | 6 | 98 | 623 | 708 | 2.64e-12 | 64.7 |
| Msa0932310 | AT3G06630.2 | 40.217 | 92 | 46 | 3 | 6 | 96 | 563 | 646 | 3.84e-12 | 64.3 |
| Msa0932310 | AT3G06630.1 | 40.217 | 92 | 46 | 3 | 6 | 96 | 563 | 646 | 3.92e-12 | 64.3 |
| Msa0932310 | AT1G08720.2 | 39.362 | 94 | 48 | 3 | 6 | 98 | 798 | 883 | 4.53e-12 | 63.9 |
| Msa0932310 | AT3G22750.1 | 38.542 | 96 | 48 | 3 | 11 | 105 | 231 | 316 | 5.00e-12 | 63.5 |
| Msa0932310 | AT3G06630.4 | 39.773 | 88 | 44 | 3 | 6 | 92 | 563 | 642 | 1.18e-11 | 62.8 |
| Msa0932310 | AT3G06630.3 | 39.773 | 88 | 44 | 3 | 6 | 92 | 563 | 642 | 1.18e-11 | 62.8 |
| Msa0932310 | AT3G06630.5 | 39.773 | 88 | 44 | 3 | 6 | 92 | 563 | 642 | 1.18e-11 | 62.8 |
| Msa0932310 | AT3G06630.6 | 39.773 | 88 | 44 | 3 | 6 | 92 | 479 | 558 | 1.18e-11 | 62.8 |
| Msa0932310 | AT2G31010.1 | 29.231 | 130 | 59 | 4 | 7 | 113 | 649 | 768 | 2.22e-11 | 62.0 |
| Msa0932310 | AT2G31010.2 | 29.231 | 130 | 59 | 4 | 7 | 113 | 649 | 768 | 2.22e-11 | 62.0 |
| Msa0932310 | AT5G49470.5 | 41.176 | 85 | 41 | 3 | 6 | 89 | 620 | 696 | 2.40e-11 | 62.0 |
| Msa0932310 | AT5G49470.6 | 41.176 | 85 | 41 | 3 | 6 | 89 | 620 | 696 | 2.57e-11 | 61.6 |
| Msa0932310 | AT3G06640.2 | 39.130 | 92 | 47 | 3 | 6 | 96 | 575 | 658 | 2.68e-11 | 61.6 |
| Msa0932310 | AT3G06640.3 | 39.130 | 92 | 47 | 3 | 6 | 96 | 575 | 658 | 2.68e-11 | 61.6 |
| Msa0932310 | AT3G06640.1 | 39.130 | 92 | 47 | 3 | 6 | 96 | 575 | 658 | 2.71e-11 | 61.6 |
| Msa0932310 | AT1G73660.1 | 32.374 | 139 | 82 | 5 | 6 | 140 | 877 | 1007 | 5.35e-11 | 60.8 |
| Msa0932310 | AT4G23050.1 | 27.068 | 133 | 64 | 3 | 6 | 113 | 596 | 720 | 7.18e-11 | 60.5 |
| Msa0932310 | AT4G23050.2 | 27.068 | 133 | 64 | 3 | 6 | 113 | 597 | 721 | 7.46e-11 | 60.5 |
Find 39 sgRNAs with CRISPR-Local
Find 302 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTGTAAGCATCCACTTTA+TGG | 0.177109 | 6_3:+341105 | None:intergenic |
| CTAAAATTCGGCCTATCATT+TGG | 0.291837 | 6_3:+340058 | None:intergenic |
| CTTCAAAGGGCAACTTGTTA+TGG | 0.332279 | 6_3:+341057 | None:intergenic |
| CATAACAAGTTGCCCTTTGA+AGG | 0.373400 | 6_3:-341056 | Msa0932310:CDS |
| CAGCTTTGCAATTGTGTTGT+GGG | 0.387668 | 6_3:-341087 | Msa0932310:CDS |
| ACAGTTAAACTTGCTGATTT+CGG | 0.389768 | 6_3:-341342 | Msa0932310:CDS |
| TGTATGATTTCACTAAAATT+CGG | 0.393164 | 6_3:+340046 | None:intergenic |
| TACCATTTCGCCATTAGAAC+CGG | 0.413669 | 6_3:-340002 | Msa0932310:CDS |
| ATTGGAACAACCGGTTCTAA+TGG | 0.431284 | 6_3:+339992 | None:intergenic |
| GCCATCCGCATTGGAACAAC+CGG | 0.433409 | 6_3:+339983 | None:intergenic |
| CGAAAGCCAATGTGGAAAAC+AGG | 0.442655 | 6_3:-339877 | Msa0932310:CDS |
| CTCTGTTAATGACTCCTCTC+TGG | 0.444183 | 6_3:+341314 | None:intergenic |
| GAGATGATGACAGCTGAAAC+AGG | 0.445773 | 6_3:-341294 | Msa0932310:CDS |
| ATGTTTCGACGAGACGACTC+TGG | 0.468042 | 6_3:-339908 | Msa0932310:CDS |
| TGATCTTGACCGGAGATCAT+AGG | 0.470549 | 6_3:-341365 | Msa0932310:CDS |
| AACCGGTTCTAATGGCGAAA+TGG | 0.471939 | 6_3:+340000 | None:intergenic |
| CCAGATAACTTGATCTTGAC+CGG | 0.486261 | 6_3:-341375 | Msa0932310:intron |
| ACAGCTTTGCAATTGTGTTG+TGG | 0.487104 | 6_3:-341088 | Msa0932310:CDS |
| TACATTAGACATGCCTTCAA+AGG | 0.488162 | 6_3:+341043 | None:intergenic |
| ATGTGGAAAACAGGTTCAAA+GGG | 0.488267 | 6_3:-339868 | Msa0932310:CDS |
| AAACATTAATGCACTTGTAC+CGG | 0.492205 | 6_3:+339925 | None:intergenic |
| AAATCATACAGATGCTCCTT+CGG | 0.494850 | 6_3:-340033 | Msa0932310:CDS |
| GGAAAGAGGATCCAAATGAT+AGG | 0.498052 | 6_3:-340069 | Msa0932310:intron |
| AATGTGGAAAACAGGTTCAA+AGG | 0.515772 | 6_3:-339869 | Msa0932310:CDS |
| GAAGCATTACAACCATAAAG+TGG | 0.519229 | 6_3:-341117 | Msa0932310:CDS |
| TTTAACTGTCCTATGATCTC+CGG | 0.531961 | 6_3:+341356 | None:intergenic |
| ACATTAGACATGCCTTCAAA+GGG | 0.532255 | 6_3:+341044 | None:intergenic |
| TCAGATGAAGCCATCCGCAT+TGG | 0.535963 | 6_3:+339974 | None:intergenic |
| AACATTAATGCACTTGTACC+GGG | 0.545157 | 6_3:+339926 | None:intergenic |
| ACCGGTTGTTCCAATGCGGA+TGG | 0.555137 | 6_3:-339984 | Msa0932310:CDS |
| CTGAAACAGGAACATATCGT+TGG | 0.585903 | 6_3:-341281 | Msa0932310:CDS |
| AACAGGAACATATCGTTGGA+TGG | 0.620005 | 6_3:-341277 | Msa0932310:CDS |
| GTATTGCCACTAGAATCTCC+CGG | 0.638020 | 6_3:-339944 | Msa0932310:CDS |
| CTTGTACCGGGAGATTCTAG+TGG | 0.658100 | 6_3:+339938 | None:intergenic |
| TGATTTCGGTCTAGCCAGAG+AGG | 0.668451 | 6_3:-341328 | Msa0932310:CDS |
| AGAAACCCCGAAAGCCAATG+TGG | 0.669643 | 6_3:-339885 | Msa0932310:CDS |
| AAATGGTAGAGAGATACCGA+AGG | 0.694007 | 6_3:+340017 | None:intergenic |
| TAGAACCGGTTGTTCCAATG+CGG | 0.695897 | 6_3:-339988 | Msa0932310:CDS |
| AGCACTGTTACTCTAAGACA+AGG | 0.714516 | 6_3:-341146 | Msa0932310:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTATAAAAAAAATAAAT+CGG | + | chr6_3:340721-340740 | None:intergenic | 0.0% |
| !! | TATAAATTAAAAATAAAAAT+CGG | + | chr6_3:340960-340979 | None:intergenic | 0.0% |
| !!! | TTATATATTTTTTATTATAT+TGG | + | chr6_3:341972-341991 | None:intergenic | 0.0% |
| !! | CATGTATAAATTAAAAAAAA+AGG | + | chr6_3:340903-340922 | None:intergenic | 10.0% |
| !!! | TTTTAACTTGTATATTAATA+CGG | - | chr6_3:340931-340950 | Msa0932310:intron | 10.0% |
| !!! | TTTATTTTTTTTGTTTGATT+TGG | - | chr6_3:341732-341751 | Msa0932310:intron | 10.0% |
| !!! | TTATTTTTTTTGTTTGATTT+GGG | - | chr6_3:341733-341752 | Msa0932310:intron | 10.0% |
| !! | GTTATTTATATTCAAAATTA+AGG | - | chr6_3:342240-342259 | Msa0932310:intron | 10.0% |
| !! | AAATAATGAATATAATTGAT+TGG | - | chr6_3:342497-342516 | Msa0932310:intron | 10.0% |
| !!! | AAATTAAATTCATTTTCATA+AGG | - | chr6_3:342570-342589 | Msa0932310:intron | 10.0% |
| !! | ATTTATAAAAATACATATGA+AGG | - | chr6_3:342743-342762 | Msa0932310:intron | 10.0% |
| !!! | AATTTTTATTTCCTATAATT+GGG | + | chr6_3:343023-343042 | None:intergenic | 10.0% |
| !!! | ATATATGTTTTATATTTTAC+AGG | - | chr6_3:343175-343194 | Msa0932310:intron | 10.0% |
| !!! | TATATGTTTTATATTTTACA+GGG | - | chr6_3:343176-343195 | Msa0932310:intron | 10.0% |
| !!! | ATTCTGAAATAATTAAAATA+TGG | + | chr6_3:344866-344885 | None:intergenic | 10.0% |
| !! | TAAGAAATTAATGTTTAAAG+TGG | - | chr6_3:341610-341629 | Msa0932310:intron | 15.0% |
| !!! | AAGAAATTAATGTTTAAAGT+GGG | - | chr6_3:341611-341630 | Msa0932310:intron | 15.0% |
| !!! | TATTTTTTTTGTTTGATTTG+GGG | - | chr6_3:341734-341753 | Msa0932310:intron | 15.0% |
| !! | TAACGTTTGAAAATTATTAA+TGG | - | chr6_3:341839-341858 | Msa0932310:intron | 15.0% |
| !!! | ATAAATAATCATGATTAGTT+TGG | + | chr6_3:341939-341958 | None:intergenic | 15.0% |
| !!! | TTACACTTTTTAAATGATAA+GGG | - | chr6_3:342103-342122 | Msa0932310:intron | 15.0% |
| !!! | TCTCTATTATTTTGTTTTTT+GGG | + | chr6_3:342679-342698 | None:intergenic | 15.0% |
| !!! | ATCTCTATTATTTTGTTTTT+TGG | + | chr6_3:342680-342699 | None:intergenic | 15.0% |
| !!! | GAATTTTTATTTCCTATAAT+TGG | + | chr6_3:343024-343043 | None:intergenic | 15.0% |
| !! | AGTTAAATTATGATTATAGT+CGG | + | chr6_3:344597-344616 | None:intergenic | 15.0% |
| !!! | TTTGTGACAAAAATATTTTA+AGG | - | chr6_3:344661-344680 | Msa0932310:intron | 15.0% |
| !! | TTTAATTATTTCAGAATACA+AGG | - | chr6_3:344869-344888 | Msa0932310:intron | 15.0% |
| !! | TATAAATTCCGAAAAAATGA+AGG | - | chr6_3:339986-340005 | Msa0932310:CDS | 20.0% |
| !! | ATAAATTCCGAAAAAATGAA+GGG | - | chr6_3:339987-340006 | Msa0932310:CDS | 20.0% |
| !! | CAGTTTATAAAATTCATAAC+TGG | - | chr6_3:340065-340084 | Msa0932310:intron | 20.0% |
| !!! | AAACCATGTGAATTTTTAAA+AGG | - | chr6_3:340260-340279 | Msa0932310:intron | 20.0% |
| !! | CTTCGTTTAAACTAAATTTA+AGG | - | chr6_3:340298-340317 | Msa0932310:intron | 20.0% |
| !! | TTCATATACAAATTGATCAA+AGG | - | chr6_3:340424-340443 | Msa0932310:intron | 20.0% |
| !!! | AAGTAATATTTCCTTTTTGT+AGG | - | chr6_3:340516-340535 | Msa0932310:intron | 20.0% |
| !!! | ACATCTCTTTTTTTTTTTGA+AGG | - | chr6_3:341174-341193 | Msa0932310:intron | 20.0% |
| !!! | TTCATGGTTTTAATGTTATT+TGG | + | chr6_3:341417-341436 | None:intergenic | 20.0% |
| !!! | GTTACACTTTTTAAATGATA+AGG | - | chr6_3:342102-342121 | Msa0932310:intron | 20.0% |
| !!! | AATTAAGGGTATTTTTGAAA+AGG | - | chr6_3:342255-342274 | Msa0932310:intron | 20.0% |
| !! | ATTTAAGCAAGTGAATATAA+CGG | + | chr6_3:342416-342435 | None:intergenic | 20.0% |
| !! | TTCATTATTATAACCTGAAA+TGG | + | chr6_3:342453-342472 | None:intergenic | 20.0% |
| !! | AATGAATATAATTGATTGGT+TGG | - | chr6_3:342501-342520 | Msa0932310:intron | 20.0% |
| !!! | ATTTTCATAAGGTTTTTTTC+AGG | - | chr6_3:342581-342600 | Msa0932310:intron | 20.0% |
| !!! | TAACTCAAAATTCGATTTTT+AGG | + | chr6_3:342708-342727 | None:intergenic | 20.0% |
| !!! | ATTTTGTTCCCTAATTTTAT+AGG | - | chr6_3:342876-342895 | Msa0932310:intron | 20.0% |
| !! | TAACTTTGCCTATAAAATTA+GGG | + | chr6_3:342887-342906 | None:intergenic | 20.0% |
| !! | ATAACTTTGCCTATAAAATT+AGG | + | chr6_3:342888-342907 | None:intergenic | 20.0% |
| !!! | TCATGATCAACATAAAATTT+TGG | - | chr6_3:342924-342943 | Msa0932310:intron | 20.0% |
| !!! | AATTTTGGAGTTTTTAAATG+AGG | - | chr6_3:342939-342958 | Msa0932310:intron | 20.0% |
| !!! | AAGGATTGAATTTTTTTTCA+TGG | + | chr6_3:343119-343138 | None:intergenic | 20.0% |
| !! | AAGAAATAGTAAATAGCAAA+TGG | - | chr6_3:343299-343318 | Msa0932310:intron | 20.0% |
| !! | TGTATGATTTCACTAAAATT+CGG | + | chr6_3:344970-344989 | None:intergenic | 20.0% |
| !!! | GGTAACCTAACATTTTTTTA+CGG | - | chr6_3:339917-339936 | Msa0932310:CDS | 25.0% |
| ! | AATAGCCGTAAAAAAATGTT+AGG | + | chr6_3:339925-339944 | None:intergenic | 25.0% |
| ! | TTCGGAATTTATAATCCAAT+AGG | + | chr6_3:339979-339998 | None:intergenic | 25.0% |
| ! | TTCAATTTCATCTTGTGATA+TGG | - | chr6_3:340154-340173 | Msa0932310:intron | 25.0% |
| !! | ACTAGTTTAATCTGGTATTT+GGG | + | chr6_3:340207-340226 | None:intergenic | 25.0% |
| !!! | TGATCTTTTAACTTAACTTC+GGG | + | chr6_3:340493-340512 | None:intergenic | 25.0% |
| !!! | CTGATCTTTTAACTTAACTT+CGG | + | chr6_3:340494-340513 | None:intergenic | 25.0% |
| ! | AAATTCTAGTACCTACAAAA+AGG | + | chr6_3:340530-340549 | None:intergenic | 25.0% |
| ! | GTTATATCTGCAATTATTCA+TGG | + | chr6_3:341433-341452 | None:intergenic | 25.0% |
| !!! | CGAAAATATCTCACTTTTTT+AGG | - | chr6_3:341636-341655 | Msa0932310:intron | 25.0% |
| !! | AGAGTATCTAAGAAATTATC+AGG | + | chr6_3:341662-341681 | None:intergenic | 25.0% |
| ! | ATTCTTAACTAGCAAAAAGA+CGG | - | chr6_3:341778-341797 | Msa0932310:intron | 25.0% |
| ! | ATATTCACTTGCTTAAATCT+TGG | - | chr6_3:342418-342437 | Msa0932310:intron | 25.0% |
| !! | AATATAATTGATTGGTTGGA+AGG | - | chr6_3:342505-342524 | Msa0932310:intron | 25.0% |
| ! | TTGAAAGCGAAAATAAATCT+AGG | + | chr6_3:342800-342819 | None:intergenic | 25.0% |
| ! | AGAAGTTTGTCAAAAAAATG+AGG | - | chr6_3:342964-342983 | Msa0932310:intron | 25.0% |
| ! | GAAGTTTGTCAAAAAAATGA+GGG | - | chr6_3:342965-342984 | Msa0932310:intron | 25.0% |
| ! | TTTGAGAAATTCCCAATTAT+AGG | - | chr6_3:343009-343028 | Msa0932310:intron | 25.0% |
| ! | TTACAGGGTCAAATATATTA+AGG | - | chr6_3:343147-343166 | Msa0932310:intron | 25.0% |
| ! | TACAGGGTCAAATATATTAA+GGG | - | chr6_3:343148-343167 | Msa0932310:intron | 25.0% |
| !! | AATAGCAAATGGTATTTTAC+AGG | - | chr6_3:343310-343329 | Msa0932310:intron | 25.0% |
| !! | ATAGCAAATGGTATTTTACA+GGG | - | chr6_3:343311-343330 | Msa0932310:intron | 25.0% |
| !! | AGTTTATGAATTTTCCAGTT+TGG | - | chr6_3:343794-343813 | Msa0932310:intron | 25.0% |
| !! | ATTGTTGTGAAGTTACATTT+TGG | - | chr6_3:344498-344517 | Msa0932310:intron | 25.0% |
| ! | AGACTTATATGGTTTCTATT+TGG | - | chr6_3:344552-344571 | Msa0932310:intron | 25.0% |
| ! | GACTTATATGGTTTCTATTT+GGG | - | chr6_3:344553-344572 | Msa0932310:intron | 25.0% |
| ! | TTAAGGTTTAAATGTGTCAT+TGG | - | chr6_3:344678-344697 | Msa0932310:intron | 25.0% |
| !!! | CAATATTTTTACAAAGTGCA+GGG | + | chr6_3:344736-344755 | None:intergenic | 25.0% |
| ! | TTTAACAGAAAGTTAACAGA+GGG | + | chr6_3:344767-344786 | None:intergenic | 25.0% |
| !! | TTTTAACAGAAAGTTAACAG+AGG | + | chr6_3:344768-344787 | None:intergenic | 25.0% |
| !!! | CTTTCATAAAATTTTGGCAT+TGG | + | chr6_3:344818-344837 | None:intergenic | 25.0% |
| !!! | CAAAATTTTATGAAAGTGCA+GGG | - | chr6_3:344822-344841 | Msa0932310:intron | 25.0% |
| GAGTAAAAGTTAATGTGAGT+TGG | - | chr6_3:339843-339862 | Msa0932310:CDS | 30.0% | |
| ATGGAGTTCATAATGAAAGT+AGG | - | chr6_3:339869-339888 | Msa0932310:CDS | 30.0% | |
| !!! | TTAACGTGTTTTAGAGAGTT+TGG | - | chr6_3:340024-340043 | Msa0932310:CDS | 30.0% |
| !!! | TAACGTGTTTTAGAGAGTTT+GGG | - | chr6_3:340025-340044 | Msa0932310:CDS | 30.0% |
| !! | GACTAGTTTAATCTGGTATT+TGG | + | chr6_3:340208-340227 | None:intergenic | 30.0% |
| !! | TCGCCTTTTAAAAATTCACA+TGG | + | chr6_3:340266-340285 | None:intergenic | 30.0% |
| TCATATGCAAACATATCAGA+AGG | + | chr6_3:340365-340384 | None:intergenic | 30.0% | |
| CGAAGTTAAGTTAAAAGATC+AGG | - | chr6_3:340492-340511 | Msa0932310:intron | 30.0% | |
| TCTTCTCTTGAAATCTTCTT+TGG | - | chr6_3:341380-341399 | Msa0932310:intron | 30.0% | |
| !! | ATCTTCTCAGCATTTGTTTT+TGG | + | chr6_3:341579-341598 | None:intergenic | 30.0% |
| TTCTTAACTAGCAAAAAGAC+GGG | - | chr6_3:341779-341798 | Msa0932310:intron | 30.0% | |
| CAATAAAAAGAACGGAAAGA+CGG | + | chr6_3:341816-341835 | None:intergenic | 30.0% | |
| CGTTAGCACAATAAAAAGAA+CGG | + | chr6_3:341824-341843 | None:intergenic | 30.0% | |
| !!! | CGGTACGTTTTAATTTGATT+GGG | + | chr6_3:342396-342415 | None:intergenic | 30.0% |
| !!! | ACGGTACGTTTTAATTTGAT+TGG | + | chr6_3:342397-342416 | None:intergenic | 30.0% |
| !! | TTGGTTGTTATTTCCATTTC+AGG | - | chr6_3:342437-342456 | Msa0932310:intron | 30.0% |
| ATTACAGTATCAATCACCTT+TGG | + | chr6_3:342544-342563 | None:intergenic | 30.0% | |
| ! | AATTGCAATTTTGCACGTTT+TGG | + | chr6_3:342823-342842 | None:intergenic | 30.0% |
| TGAGTTAGCAATATACTCAT+GGG | - | chr6_3:342849-342868 | Msa0932310:intron | 30.0% | |
| AATCCTTCGTGTATATTACA+GGG | - | chr6_3:343132-343151 | Msa0932310:intron | 30.0% | |
| TGTGTCCATAAACTTATATG+TGG | + | chr6_3:343460-343479 | None:intergenic | 30.0% | |
| AGAGAAGTGATACTTCTTTA+CGG | + | chr6_3:343572-343591 | None:intergenic | 30.0% | |
| !! | ACAGTTAAACTTGCTGATTT+CGG | - | chr6_3:343671-343690 | Msa0932310:intron | 30.0% |
| GATTGTACTTGCACAATTAA+TGG | - | chr6_3:344067-344086 | Msa0932310:intron | 30.0% | |
| !!! | TGGTTTTATCCGTACTTAAA+AGG | + | chr6_3:344390-344409 | None:intergenic | 30.0% |
| AAAGCTACTTGAGACTTATA+TGG | - | chr6_3:344541-344560 | Msa0932310:intron | 30.0% | |
| !! | CCAATATTTTTACAAAGTGC+AGG | + | chr6_3:344737-344756 | None:intergenic | 30.0% |
| CCTGCACTTTGTAAAAATAT+TGG | - | chr6_3:344734-344753 | Msa0932310:intron | 30.0% | |
| ! | AACACAAAACAAAAAAGTGC+AGG | - | chr6_3:344790-344809 | Msa0932310:intron | 30.0% |
| ! | ACACAAAACAAAAAAGTGCA+GGG | - | chr6_3:344791-344810 | Msa0932310:intron | 30.0% |
| ! | CCTGCACTTTCATAAAATTT+TGG | + | chr6_3:344824-344843 | None:intergenic | 30.0% |
| !! | CCAAAATTTTATGAAAGTGC+AGG | - | chr6_3:344821-344840 | Msa0932310:intron | 30.0% |
| AAACATTAATGCACTTGTAC+CGG | + | chr6_3:345091-345110 | None:intergenic | 30.0% | |
| ! | AGTTAATGTGAGTTGGATCA+TGG | - | chr6_3:339850-339869 | Msa0932310:CDS | 35.0% |
| ! | ACAATCACGTCTTGACATTT+TGG | - | chr6_3:339896-339915 | Msa0932310:CDS | 35.0% |
| !!! | AAAAAAGCGTTTTTCCCACA+CGG | - | chr6_3:340109-340128 | Msa0932310:intron | 35.0% |
| !! | GGGTATAGACTAGTTTAATC+TGG | + | chr6_3:340215-340234 | None:intergenic | 35.0% |
| AAAATAAATCGGACCTGAAC+TGG | + | chr6_3:340710-340729 | None:intergenic | 35.0% | |
| ! | AGAGCATTTCGCTCTTTATT+TGG | + | chr6_3:341115-341134 | None:intergenic | 35.0% |
| TCTGGACTTTCAATACTAGT+GGG | + | chr6_3:341328-341347 | None:intergenic | 35.0% | |
| ATCTGGACTTTCAATACTAG+TGG | + | chr6_3:341329-341348 | None:intergenic | 35.0% | |
| ATAACAACCCATCTACATTG+AGG | - | chr6_3:341448-341467 | Msa0932310:intron | 35.0% | |
| TCAAGATTGCTGAAAGAAAC+TGG | + | chr6_3:341477-341496 | None:intergenic | 35.0% | |
| !! | TTGCCAAGAGTATTTGGAAT+TGG | + | chr6_3:341547-341566 | None:intergenic | 35.0% |
| !! | GTAAGTTTGCCAAGAGTATT+TGG | + | chr6_3:341553-341572 | None:intergenic | 35.0% |
| CTGAGTTAGCAATATACTCA+TGG | - | chr6_3:342848-342867 | Msa0932310:intron | 35.0% | |
| CAATCCTTCGTGTATATTAC+AGG | - | chr6_3:343131-343150 | Msa0932310:intron | 35.0% | |
| ! | GATTTGCTCTTGATATCCAA+CGG | - | chr6_3:343406-343425 | Msa0932310:intron | 35.0% |
| ATGCACTTGTGAATCTGTTT+GGG | + | chr6_3:343507-343526 | None:intergenic | 35.0% | |
| TATGCACTTGTGAATCTGTT+TGG | + | chr6_3:343508-343527 | None:intergenic | 35.0% | |
| GAAACAGGCTATCAAGATTA+AGG | + | chr6_3:343614-343633 | None:intergenic | 35.0% | |
| TTTAACTGTCCTATGATCTC+CGG | + | chr6_3:343660-343679 | None:intergenic | 35.0% | |
| ! | CCAGAAGTACGTCTTAATTT+CGG | - | chr6_3:343761-343780 | Msa0932310:intron | 35.0% |
| ! | GAAGCATTACAACCATAAAG+TGG | - | chr6_3:343896-343915 | Msa0932310:intron | 35.0% |
| ACATTAGACATGCCTTCAAA+GGG | + | chr6_3:343972-343991 | None:intergenic | 35.0% | |
| TACATTAGACATGCCTTCAA+AGG | + | chr6_3:343973-343992 | None:intergenic | 35.0% | |
| AATTAATGGCCTGTAGCAAA+AGG | - | chr6_3:344081-344100 | Msa0932310:intron | 35.0% | |
| AATACATCAGAAAAGCAGTG+CGG | + | chr6_3:344130-344149 | None:intergenic | 35.0% | |
| !! | TTCTGATGTATTGGTCGTTT+TGG | - | chr6_3:344138-344157 | Msa0932310:intron | 35.0% |
| !! | TCTGATGTATTGGTCGTTTT+GGG | - | chr6_3:344139-344158 | Msa0932310:intron | 35.0% |
| !! | CGGTTTTGTCCTTAGTTAAA+TGG | - | chr6_3:344179-344198 | Msa0932310:intron | 35.0% |
| CGCTTGTTTCCATTTAACTA+AGG | + | chr6_3:344191-344210 | None:intergenic | 35.0% | |
| !! | AGCCTTGATTTTCGAGAAAT+GGG | + | chr6_3:344339-344358 | None:intergenic | 35.0% |
| !! | TAGCCTTGATTTTCGAGAAA+TGG | + | chr6_3:344340-344359 | None:intergenic | 35.0% |
| TTCCAACGTATTGTATGCTT+TGG | + | chr6_3:344431-344450 | None:intergenic | 35.0% | |
| ! | CAAAATCTGATGAAAGTGCA+GGG | + | chr6_3:344705-344724 | None:intergenic | 35.0% |
| !! | CTTTCATCAGATTTTGGCAT+TGG | - | chr6_3:344709-344728 | Msa0932310:intron | 35.0% |
| CTATGATTGTAACATCATGC+TGG | - | chr6_3:344923-344942 | Msa0932310:intron | 35.0% | |
| CTAAAATTCGGCCTATCATT+TGG | + | chr6_3:344958-344977 | None:intergenic | 35.0% | |
| AAATCATACAGATGCTCCTT+CGG | - | chr6_3:344980-344999 | Msa0932310:intron | 35.0% | |
| AACATTAATGCACTTGTACC+GGG | + | chr6_3:345090-345109 | None:intergenic | 35.0% | |
| ! | TTTGAACCTGTTTTCCACAT+TGG | + | chr6_3:345145-345164 | None:intergenic | 35.0% |
| AATGTGGAAAACAGGTTCAA+AGG | - | chr6_3:345144-345163 | Msa0932310:intron | 35.0% | |
| ATGTGGAAAACAGGTTCAAA+GGG | - | chr6_3:345145-345164 | Msa0932310:intron | 35.0% | |
| TCTCTTCTCATGCATCCTAT+TGG | - | chr6_3:339961-339980 | Msa0932310:CDS | 40.0% | |
| !!! | CCGTAAGCCCTTCATTTTTT+CGG | + | chr6_3:339997-340016 | None:intergenic | 40.0% |
| CCGAAAAAATGAAGGGCTTA+CGG | - | chr6_3:339994-340013 | Msa0932310:CDS | 40.0% | |
| !!! | AAAAAGCGTTTTTCCCACAC+GGG | - | chr6_3:340110-340129 | Msa0932310:intron | 40.0% |
| AGAGTATGGAACCTTGTGTT+GGG | + | chr6_3:340237-340256 | None:intergenic | 40.0% | |
| ! | TCACATGGTTTGTGAGAGTA+TGG | + | chr6_3:340251-340270 | None:intergenic | 40.0% |
| CTGGACTTTCAATACTAGTG+GGG | + | chr6_3:341327-341346 | None:intergenic | 40.0% | |
| CAGCCAATTCCAAATACTCT+TGG | - | chr6_3:341541-341560 | Msa0932310:intron | 40.0% | |
| ! | ACTACACCTTTCAGCACTTT+TGG | + | chr6_3:342292-342311 | None:intergenic | 40.0% |
| TGACCCTGTAATATACACGA+AGG | + | chr6_3:343138-343157 | None:intergenic | 40.0% | |
| ! | AAGCTAGCAGCATTTTTACG+AGG | - | chr6_3:343431-343450 | Msa0932310:intron | 40.0% |
| GGTGGCCACATATAAGTTTA+TGG | - | chr6_3:343452-343471 | Msa0932310:intron | 40.0% | |
| TGCACTTGTGAATCTGTTTG+GGG | + | chr6_3:343506-343525 | None:intergenic | 40.0% | |
| AAGTTATCTGGGAAGGAAAC+AGG | + | chr6_3:343629-343648 | None:intergenic | 40.0% | |
| CAAGATCAAGTTATCTGGGA+AGG | + | chr6_3:343636-343655 | None:intergenic | 40.0% | |
| CGGTCAAGATCAAGTTATCT+GGG | + | chr6_3:343640-343659 | None:intergenic | 40.0% | |
| CCAGATAACTTGATCTTGAC+CGG | - | chr6_3:343638-343657 | Msa0932310:intron | 40.0% | |
| CTGAAACAGGAACATATCGT+TGG | - | chr6_3:343732-343751 | Msa0932310:intron | 40.0% | |
| AACAGGAACATATCGTTGGA+TGG | - | chr6_3:343736-343755 | Msa0932310:intron | 40.0% | |
| CCGAAATTAAGACGTACTTC+TGG | + | chr6_3:343764-343783 | None:intergenic | 40.0% | |
| ! | TCCAGTTTGGTTTCCATGTT+CGG | - | chr6_3:343807-343826 | Msa0932310:intron | 40.0% |
| !! | TTACTTTTATGTGTGGTGGC+AGG | - | chr6_3:343839-343858 | Msa0932310:intron | 40.0% |
| !! | AGCACTGTTACTCTAAGACA+AGG | - | chr6_3:343867-343886 | Msa0932310:intron | 40.0% |
| AGCTGTAAGCATCCACTTTA+TGG | + | chr6_3:343911-343930 | None:intergenic | 40.0% | |
| ACAGCTTTGCAATTGTGTTG+TGG | - | chr6_3:343925-343944 | Msa0932310:intron | 40.0% | |
| CAGCTTTGCAATTGTGTTGT+GGG | - | chr6_3:343926-343945 | Msa0932310:intron | 40.0% | |
| !! | CTTCAAAGGGCAACTTGTTA+TGG | + | chr6_3:343959-343978 | None:intergenic | 40.0% |
| CATAACAAGTTGCCCTTTGA+AGG | - | chr6_3:343957-343976 | Msa0932310:intron | 40.0% | |
| !!! | AGCATATGCAGCTGCTTTTA+AGG | - | chr6_3:343998-344017 | Msa0932310:intron | 40.0% |
| ! | AAACATGGACCTTTTGCTAC+AGG | + | chr6_3:344093-344112 | None:intergenic | 40.0% |
| !! | GCACTGCTTTTCTGATGTAT+TGG | - | chr6_3:344129-344148 | Msa0932310:intron | 40.0% |
| AACTAAGGACAAAACCGTGA+GGG | + | chr6_3:344176-344195 | None:intergenic | 40.0% | |
| TAACTAAGGACAAAACCGTG+AGG | + | chr6_3:344177-344196 | None:intergenic | 40.0% | |
| ! | TGGAAACAAGCGAGACTTTT+TGG | - | chr6_3:344199-344218 | Msa0932310:intron | 40.0% |
| ! | TAGTCCATTAGCTTCGACTA+GGG | + | chr6_3:344242-344261 | None:intergenic | 40.0% |
| ! | TTAGTCCATTAGCTTCGACT+AGG | + | chr6_3:344243-344262 | None:intergenic | 40.0% |
| !! | AGTCGAAGCTAATGGACTAA+AGG | - | chr6_3:344243-344262 | Msa0932310:intron | 40.0% |
| !! | GTCGAAGCTAATGGACTAAA+GGG | - | chr6_3:344244-344263 | Msa0932310:intron | 40.0% |
| !! | TGGGAGACTTTTTGGTGTAT+TGG | + | chr6_3:344320-344339 | None:intergenic | 40.0% |
| ! | TCGAGAAATGGGAGACTTTT+TGG | + | chr6_3:344328-344347 | None:intergenic | 40.0% |
| CTCCCATTTCTCGAAAATCA+AGG | - | chr6_3:344334-344353 | Msa0932310:intron | 40.0% | |
| !! | GCCATGACACCTTTTAAGTA+CGG | - | chr6_3:344378-344397 | Msa0932310:intron | 40.0% |
| !! | TCCGTACTTAAAAGGTGTCA+TGG | + | chr6_3:344382-344401 | None:intergenic | 40.0% |
| ! | TTGTATGCTTTGGACCTTGT+GGG | + | chr6_3:344421-344440 | None:intergenic | 40.0% |
| ! | ATTGTATGCTTTGGACCTTG+TGG | + | chr6_3:344422-344441 | None:intergenic | 40.0% |
| GTCCAAAGCATACAATACGT+TGG | - | chr6_3:344426-344445 | Msa0932310:intron | 40.0% | |
| ! | CTGCTGCTTGAAGTTTACTA+AGG | - | chr6_3:344637-344656 | Msa0932310:intron | 40.0% |
| ! | CCAAAATCTGATGAAAGTGC+AGG | + | chr6_3:344706-344725 | None:intergenic | 40.0% |
| ! | CCTGCACTTTCATCAGATTT+TGG | - | chr6_3:344703-344722 | Msa0932310:intron | 40.0% |
| ACAATCATAGCTAAATCGCC+AGG | + | chr6_3:344913-344932 | None:intergenic | 40.0% | |
| TGTAACATCATGCTGGAAAG+AGG | - | chr6_3:344930-344949 | Msa0932310:intron | 40.0% | |
| GGAAAGAGGATCCAAATGAT+AGG | - | chr6_3:344944-344963 | Msa0932310:intron | 40.0% | |
| AAATGGTAGAGAGATACCGA+AGG | + | chr6_3:344999-345018 | None:intergenic | 40.0% | |
| TACCATTTCGCCATTAGAAC+CGG | - | chr6_3:345011-345030 | Msa0932310:intron | 40.0% | |
| ! | ATTGGAACAACCGGTTCTAA+TGG | + | chr6_3:345024-345043 | None:intergenic | 40.0% |
| !!! | TGTTTTCCACATTGGCTTTC+GGG | + | chr6_3:345137-345156 | None:intergenic | 40.0% |
| !!! | CTGTTTTCCACATTGGCTTT+CGG | + | chr6_3:345138-345157 | None:intergenic | 40.0% |
| GGATGCATGAGAAGAGAGTA+TGG | + | chr6_3:339958-339977 | None:intergenic | 45.0% | |
| ! | CTCCAGGAGGTGTGTATATT+GGG | + | chr6_3:340180-340199 | None:intergenic | 45.0% |
| ! | TCTCCAGGAGGTGTGTATAT+TGG | + | chr6_3:340181-340200 | None:intergenic | 45.0% |
| TAGTCTATACCCCCAACACA+AGG | - | chr6_3:340223-340242 | Msa0932310:intron | 45.0% | |
| AGTATGGAACCTTGTGTTGG+GGG | + | chr6_3:340235-340254 | None:intergenic | 45.0% | |
| GAGTATGGAACCTTGTGTTG+GGG | + | chr6_3:340236-340255 | None:intergenic | 45.0% | |
| ! | GAGAGTATGGAACCTTGTGT+TGG | + | chr6_3:340238-340257 | None:intergenic | 45.0% |
| GAGATGTCAAATGCTCTAGC+AGG | + | chr6_3:341161-341180 | None:intergenic | 45.0% | |
| CTGGTCTCCTCAATGTAGAT+GGG | + | chr6_3:341458-341477 | None:intergenic | 45.0% | |
| ! | ACTGGTCTCCTCAATGTAGA+TGG | + | chr6_3:341459-341478 | None:intergenic | 45.0% |
| !! | GTCAGTCCAAAAGTGCTGAA+AGG | - | chr6_3:342283-342302 | Msa0932310:intron | 45.0% |
| AGGAAATCAGCATGCACCAA+AGG | - | chr6_3:342525-342544 | Msa0932310:intron | 45.0% | |
| ACACGCATATCCAAGCACTT+TGG | + | chr6_3:343378-343397 | None:intergenic | 45.0% | |
| ! | AAAGTGCTTGGATATGCGTG+TGG | - | chr6_3:343377-343396 | Msa0932310:intron | 45.0% |
| ! | CTAGCAGCATTTTTACGAGG+TGG | - | chr6_3:343434-343453 | Msa0932310:intron | 45.0% |
| GCACTTGTGAATCTGTTTGG+GGG | + | chr6_3:343505-343524 | None:intergenic | 45.0% | |
| CCGGTCAAGATCAAGTTATC+TGG | + | chr6_3:343641-343660 | None:intergenic | 45.0% | |
| TGATCTTGACCGGAGATCAT+AGG | - | chr6_3:343648-343667 | Msa0932310:intron | 45.0% | |
| CTCTGTTAATGACTCCTCTC+TGG | + | chr6_3:343702-343721 | None:intergenic | 45.0% | |
| GAGATGATGACAGCTGAAAC+AGG | - | chr6_3:343719-343738 | Msa0932310:intron | 45.0% | |
| ACCGAACATGGAAACCAAAC+TGG | + | chr6_3:343811-343830 | None:intergenic | 45.0% | |
| ! | AGTCCATTAGCTTCGACTAG+GGG | + | chr6_3:344241-344260 | None:intergenic | 45.0% |
| AACAAAAGTCCCCCAGTCAA+GGG | + | chr6_3:344297-344316 | None:intergenic | 45.0% | |
| AAACCATGAGAACTCCCACA+AGG | - | chr6_3:344404-344423 | Msa0932310:intron | 45.0% | |
| GGAAAAGTAGAGCAGACTTG+AGG | - | chr6_3:344447-344466 | Msa0932310:intron | 45.0% | |
| AAGTAGAGCAGACTTGAGGT+CGG | - | chr6_3:344451-344470 | Msa0932310:intron | 45.0% | |
| TCAAGCAGCAGTGAATTCAG+TGG | + | chr6_3:344628-344647 | None:intergenic | 45.0% | |
| ! | AACCGGTTCTAATGGCGAAA+TGG | + | chr6_3:345016-345035 | None:intergenic | 45.0% |
| TAGAACCGGTTGTTCCAATG+CGG | - | chr6_3:345025-345044 | Msa0932310:intron | 45.0% | |
| GTATTGCCACTAGAATCTCC+CGG | - | chr6_3:345069-345088 | Msa0932310:intron | 45.0% | |
| !!! | GTTTTCCACATTGGCTTTCG+GGG | + | chr6_3:345136-345155 | None:intergenic | 45.0% |
| CGAAAGCCAATGTGGAAAAC+AGG | - | chr6_3:345136-345155 | Msa0932310:intron | 45.0% | |
| !! | TTATTTATATTCAAAATTAA+GGG | - | chr6_3:342241-342260 | Msa0932310:intron | 5.0% |
| CTTTCTTCACACACCCGTGT+GGG | + | chr6_3:340126-340145 | None:intergenic | 50.0% | |
| AAATCGGACCTGAACTGGTG+TGG | + | chr6_3:340705-340724 | None:intergenic | 50.0% | |
| AGGATACCCGTGCATACAGA+CGG | + | chr6_3:341141-341160 | None:intergenic | 50.0% | |
| TACACCTAGAGTAGCAGCCA+GGG | + | chr6_3:341356-341375 | None:intergenic | 50.0% | |
| TTACACCTAGAGTAGCAGCC+AGG | + | chr6_3:341357-341376 | None:intergenic | 50.0% | |
| ! | GAGTATGCGACCAAAGTGCT+TGG | - | chr6_3:343365-343384 | Msa0932310:intron | 50.0% |
| TTGGATATGCGTGTGGCTGT+TGG | - | chr6_3:343384-343403 | Msa0932310:intron | 50.0% | |
| TGATTTCGGTCTAGCCAGAG+AGG | - | chr6_3:343685-343704 | Msa0932310:intron | 50.0% | |
| GAGGACTTGAGGTCGAAACA+TGG | + | chr6_3:344108-344127 | None:intergenic | 50.0% | |
| ACATCAGAAAAGCAGTGCGG+AGG | + | chr6_3:344127-344146 | None:intergenic | 50.0% | |
| AAACCGTGAGGGCTTACACA+AGG | + | chr6_3:344165-344184 | None:intergenic | 50.0% | |
| TCGACTAGGGGGCTATTGTT+TGG | + | chr6_3:344229-344248 | None:intergenic | 50.0% | |
| ! | GTCCATTAGCTTCGACTAGG+GGG | + | chr6_3:344240-344259 | None:intergenic | 50.0% |
| ACAAAAGTCCCCCAGTCAAG+GGG | + | chr6_3:344296-344315 | None:intergenic | 50.0% | |
| GAACAAAAGTCCCCCAGTCA+AGG | + | chr6_3:344298-344317 | None:intergenic | 50.0% | |
| CCAGGAAGATCTTCAGCACT+GGG | + | chr6_3:344895-344914 | None:intergenic | 50.0% | |
| TCAGATGAAGCCATCCGCAT+TGG | + | chr6_3:345042-345061 | None:intergenic | 50.0% | |
| CTTGTACCGGGAGATTCTAG+TGG | + | chr6_3:345078-345097 | None:intergenic | 50.0% | |
| ATGTTTCGACGAGACGACTC+TGG | - | chr6_3:345105-345124 | Msa0932310:intron | 50.0% | |
| AGAAACCCCGAAAGCCAATG+TGG | - | chr6_3:345128-345147 | Msa0932310:intron | 50.0% | |
| GCTTTCTTCACACACCCGTG+TGG | + | chr6_3:340127-340146 | None:intergenic | 55.0% | |
| GGCCCAATATACACACCTCC+TGG | - | chr6_3:340175-340194 | Msa0932310:intron | 55.0% | |
| GTATTTGGGCTGTCTCCAGG+AGG | + | chr6_3:340193-340212 | None:intergenic | 55.0% | |
| CTGGTATTTGGGCTGTCTCC+AGG | + | chr6_3:340196-340215 | None:intergenic | 55.0% | |
| GACCTGAACAAGGCATGGTG+TGG | - | chr6_3:340673-340692 | Msa0932310:intron | 55.0% | |
| ! | TGCCACACCATGCCTTGTTC+AGG | + | chr6_3:340678-340697 | None:intergenic | 55.0% |
| CTCTCACCCGTCTGTATGCA+CGG | - | chr6_3:341131-341150 | Msa0932310:CDS | 55.0% | |
| TCTCACCCGTCTGTATGCAC+GGG | - | chr6_3:341132-341151 | Msa0932310:CDS | 55.0% | |
| GGATACCCGTGCATACAGAC+GGG | + | chr6_3:341140-341159 | None:intergenic | 55.0% | |
| ACACCTAGAGTAGCAGCCAG+GGG | + | chr6_3:341355-341374 | None:intergenic | 55.0% | |
| ! | AATGCTGCTAGCTTCGCCGT+TGG | + | chr6_3:343425-343444 | None:intergenic | 55.0% |
| AAAGCAGTGCGGAGGACTTG+AGG | + | chr6_3:344119-344138 | None:intergenic | 55.0% | |
| AGCCCCCTAGTCGAAGCTAA+TGG | - | chr6_3:344235-344254 | Msa0932310:intron | 55.0% | |
| TGTGGCTTAGCCCCTTGACT+GGG | - | chr6_3:344283-344302 | Msa0932310:intron | 55.0% | |
| GGACCTTGTGGGAGTTCTCA+TGG | + | chr6_3:344410-344429 | None:intergenic | 55.0% | |
| ! | CCCAGTGCTGAAGATCTTCC+TGG | - | chr6_3:344892-344911 | Msa0932310:intron | 55.0% |
| GCCAGGAAGATCTTCAGCAC+TGG | + | chr6_3:344896-344915 | None:intergenic | 55.0% | |
| ACCGGTTGTTCCAATGCGGA+TGG | - | chr6_3:345029-345048 | Msa0932310:intron | 55.0% | |
| GCCATCCGCATTGGAACAAC+CGG | + | chr6_3:345033-345052 | None:intergenic | 55.0% | |
| ACCAGGGACGGACCTGAACA+AGG | - | chr6_3:340663-340682 | Msa0932310:intron | 60.0% | |
| GGACGGACCTGAACAAGGCA+TGG | - | chr6_3:340668-340687 | Msa0932310:intron | 60.0% | |
| GGCAAGTGCCACACCAGTTC+AGG | - | chr6_3:340694-340713 | Msa0932310:intron | 60.0% | |
| TGAAAGTCCAGATCCGCCCC+TGG | - | chr6_3:341336-341355 | Msa0932310:CDS | 60.0% | |
| ! | GGGCCTTGTGTAAGCCCTCA+CGG | - | chr6_3:344159-344178 | Msa0932310:intron | 60.0% |
| AGGGGCTAAGCCACACACGA+GGG | + | chr6_3:344278-344297 | None:intergenic | 60.0% | |
| AAGGGGCTAAGCCACACACG+AGG | + | chr6_3:344279-344298 | None:intergenic | 60.0% | |
| GTGTGGCTTAGCCCCTTGAC+TGG | - | chr6_3:344282-344301 | Msa0932310:intron | 60.0% | |
| GTGGCTTAGCCCCTTGACTG+GGG | - | chr6_3:344284-344303 | Msa0932310:intron | 60.0% | |
| TGGCTTAGCCCCTTGACTGG+GGG | - | chr6_3:344285-344304 | Msa0932310:intron | 60.0% | |
| ! | GCCTTGTTCAGGTCCGTCCC+TGG | + | chr6_3:340667-340686 | None:intergenic | 65.0% |
| CCTAGAGTAGCAGCCAGGGG+CGG | + | chr6_3:341352-341371 | None:intergenic | 65.0% | |
| AGCCACACACGAGGGCTGAC+AGG | + | chr6_3:344270-344289 | None:intergenic | 65.0% | |
| GTAGCAGCCAGGGGCGGATC+TGG | + | chr6_3:341346-341365 | None:intergenic | 70.0% | |
| CCGCCCCTGGCTGCTACTCT+AGG | - | chr6_3:341349-341368 | Msa0932310:CDS | 70.0% | |
| GGCCTGTCAGCCCTCGTGTG+TGG | - | chr6_3:344265-344284 | Msa0932310:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 339838 | 345197 | 339838 | ID=Msa0932310;Name=Msa0932310 |
| chr6_3 | mRNA | 339838 | 345197 | 339838 | ID=Msa0932310-mRNA-1;Parent=Msa0932310;Name=Msa0932310-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0|0|0.75|0.33|0.5|4|0|178 |
| chr6_3 | exon | 345191 | 345197 | 345191 | ID=Msa0932310-mRNA-1:exon:160;Parent=Msa0932310-mRNA-1 |
| chr6_3 | exon | 341269 | 341393 | 341269 | ID=Msa0932310-mRNA-1:exon:159;Parent=Msa0932310-mRNA-1 |
| chr6_3 | exon | 341016 | 341174 | 341016 | ID=Msa0932310-mRNA-1:exon:158;Parent=Msa0932310-mRNA-1 |
| chr6_3 | exon | 339838 | 340083 | 339838 | ID=Msa0932310-mRNA-1:exon:157;Parent=Msa0932310-mRNA-1 |
| chr6_3 | CDS | 345191 | 345197 | 345191 | ID=Msa0932310-mRNA-1:cds;Parent=Msa0932310-mRNA-1 |
| chr6_3 | CDS | 341269 | 341393 | 341269 | ID=Msa0932310-mRNA-1:cds;Parent=Msa0932310-mRNA-1 |
| chr6_3 | CDS | 341016 | 341174 | 341016 | ID=Msa0932310-mRNA-1:cds;Parent=Msa0932310-mRNA-1 |
| chr6_3 | CDS | 339838 | 340083 | 339838 | ID=Msa0932310-mRNA-1:cds;Parent=Msa0932310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
