Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0932380 | sp|Q9STS6|LBD27_ARATH | 56.731 | 104 | 44 | 1 | 9 | 112 | 36 | 138 | 4.90e-35 | 129 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0932380 | TF | LOB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0932380 | MtrunA17_Chr6g0449311 | 88.889 | 144 | 13 | 1 | 37 | 177 | 1 | 144 | 1.41e-74 | 222 |
| Msa0932380 | MtrunA17_Chr5g0439111 | 64.557 | 158 | 44 | 4 | 1 | 153 | 1 | 151 | 1.85e-60 | 189 |
| Msa0932380 | MtrunA17_Chr6g0452661 | 59.615 | 156 | 51 | 3 | 1 | 153 | 1 | 147 | 9.04e-58 | 183 |
| Msa0932380 | MtrunA17_Chr4g0055441 | 62.590 | 139 | 38 | 3 | 10 | 145 | 3 | 130 | 1.13e-53 | 169 |
| Msa0932380 | MtrunA17_Chr6g0452691 | 56.081 | 148 | 52 | 3 | 1 | 142 | 1 | 141 | 1.41e-52 | 167 |
| Msa0932380 | MtrunA17_Chr6g0452671 | 55.634 | 142 | 56 | 3 | 1 | 140 | 1 | 137 | 6.50e-47 | 154 |
| Msa0932380 | MtrunA17_Chr4g0059901 | 51.887 | 106 | 50 | 1 | 8 | 113 | 9 | 113 | 2.32e-32 | 118 |
| Msa0932380 | MtrunA17_Chr8g0342351 | 53.333 | 105 | 48 | 1 | 8 | 112 | 11 | 114 | 4.32e-31 | 114 |
| Msa0932380 | MtrunA17_Chr3g0097221 | 46.667 | 105 | 55 | 1 | 7 | 111 | 5 | 108 | 2.24e-27 | 105 |
| Msa0932380 | MtrunA17_Chr4g0058651 | 39.552 | 134 | 69 | 2 | 7 | 140 | 9 | 130 | 2.60e-27 | 103 |
| Msa0932380 | MtrunA17_Chr7g0227511 | 45.918 | 98 | 52 | 1 | 7 | 104 | 9 | 105 | 1.49e-26 | 100 |
| Msa0932380 | MtrunA17_Chr2g0330201 | 46.226 | 106 | 56 | 1 | 8 | 113 | 18 | 122 | 7.97e-26 | 101 |
| Msa0932380 | MtrunA17_Chr5g0402611 | 43.810 | 105 | 58 | 1 | 7 | 111 | 6 | 109 | 1.07e-25 | 101 |
| Msa0932380 | MtrunA17_Chr8g0353981 | 49.398 | 83 | 41 | 1 | 7 | 89 | 5 | 86 | 2.05e-25 | 99.0 |
| Msa0932380 | MtrunA17_Chr3g0115431 | 44.118 | 102 | 56 | 1 | 10 | 111 | 10 | 110 | 2.33e-25 | 99.0 |
| Msa0932380 | MtrunA17_Chr3g0117121 | 44.898 | 98 | 53 | 1 | 7 | 104 | 8 | 104 | 6.23e-25 | 97.1 |
| Msa0932380 | MtrunA17_Chr4g0043421 | 38.931 | 131 | 78 | 2 | 10 | 140 | 16 | 144 | 8.26e-25 | 96.3 |
| Msa0932380 | MtrunA17_Chr6g0449641 | 42.857 | 98 | 55 | 1 | 7 | 104 | 7 | 103 | 1.32e-23 | 92.0 |
| Msa0932380 | MtrunA17_Chr5g0437571 | 38.793 | 116 | 69 | 2 | 7 | 122 | 4 | 117 | 2.10e-23 | 92.4 |
| Msa0932380 | MtrunA17_Chr2g0311601 | 42.553 | 94 | 53 | 1 | 10 | 103 | 14 | 106 | 6.41e-23 | 90.9 |
| Msa0932380 | MtrunA17_Chr5g0444351 | 31.250 | 144 | 95 | 2 | 10 | 153 | 6 | 145 | 8.58e-23 | 90.1 |
| Msa0932380 | MtrunA17_Chr6g0449651 | 41.837 | 98 | 56 | 1 | 7 | 104 | 65 | 161 | 1.58e-22 | 90.9 |
| Msa0932380 | MtrunA17_Chr5g0437401 | 36.697 | 109 | 68 | 1 | 5 | 113 | 7 | 114 | 3.33e-22 | 89.4 |
| Msa0932380 | MtrunA17_Chr4g0030001 | 41.228 | 114 | 64 | 3 | 10 | 122 | 25 | 136 | 5.39e-22 | 89.4 |
| Msa0932380 | MtrunA17_Chr3g0106101 | 37.838 | 111 | 67 | 2 | 10 | 120 | 8 | 116 | 5.42e-22 | 89.0 |
| Msa0932380 | MtrunA17_Chr5g0438091 | 32.353 | 136 | 85 | 2 | 10 | 139 | 40 | 174 | 1.33e-21 | 88.2 |
| Msa0932380 | MtrunA17_Chr7g0225111 | 37.273 | 110 | 68 | 1 | 10 | 119 | 6 | 114 | 1.68e-21 | 85.9 |
| Msa0932380 | MtrunA17_Chr8g0374591 | 39.423 | 104 | 62 | 1 | 8 | 111 | 7 | 109 | 1.82e-21 | 86.3 |
| Msa0932380 | MtrunA17_Chr4g0040831 | 33.333 | 129 | 77 | 3 | 8 | 132 | 14 | 137 | 6.80e-21 | 86.7 |
| Msa0932380 | MtrunA17_Chr8g0374601 | 40.385 | 104 | 61 | 1 | 8 | 111 | 25 | 127 | 7.35e-21 | 88.2 |
| Msa0932380 | MtrunA17_Chr1g0200201 | 37.405 | 131 | 72 | 3 | 10 | 132 | 73 | 201 | 1.08e-20 | 86.7 |
| Msa0932380 | MtrunA17_Chr3g0114061 | 40.000 | 105 | 61 | 2 | 10 | 114 | 9 | 111 | 1.74e-20 | 84.3 |
| Msa0932380 | MtrunA17_Chr3g0113891 | 38.462 | 104 | 63 | 1 | 5 | 108 | 10 | 112 | 3.24e-20 | 84.3 |
| Msa0932380 | MtrunA17_Chr3g0129071 | 37.755 | 98 | 60 | 1 | 10 | 107 | 48 | 144 | 9.16e-20 | 84.3 |
| Msa0932380 | MtrunA17_Chr5g0432451 | 32.143 | 140 | 83 | 2 | 10 | 149 | 44 | 171 | 1.46e-19 | 83.6 |
| Msa0932380 | MtrunA17_Chr7g0260971 | 39.806 | 103 | 60 | 2 | 10 | 111 | 15 | 116 | 4.77e-18 | 79.3 |
| Msa0932380 | MtrunA17_Chr8g0351721 | 36.111 | 108 | 67 | 2 | 5 | 111 | 14 | 120 | 1.09e-16 | 75.9 |
| Msa0932380 | MtrunA17_Chr1g0184281 | 35.652 | 115 | 70 | 3 | 10 | 121 | 16 | 129 | 4.93e-16 | 73.6 |
| Msa0932380 | MtrunA17_Chr7g0245871 | 36.364 | 99 | 61 | 2 | 10 | 107 | 28 | 125 | 7.09e-16 | 73.9 |
| Msa0932380 | MtrunA17_Chr8g0351701 | 34.951 | 103 | 65 | 2 | 10 | 111 | 24 | 125 | 9.21e-16 | 73.6 |
| Msa0932380 | MtrunA17_Chr4g0046201 | 38.636 | 88 | 53 | 1 | 9 | 96 | 6 | 92 | 9.52e-16 | 73.9 |
| Msa0932380 | MtrunA17_Chr6g0460951 | 34.314 | 102 | 65 | 2 | 10 | 110 | 41 | 141 | 2.36e-15 | 72.4 |
| Msa0932380 | MtrunA17_Chr8g0374581 | 35.577 | 104 | 65 | 2 | 8 | 110 | 7 | 109 | 2.00e-14 | 69.7 |
| Msa0932380 | MtrunA17_Chr1g0184271 | 28.082 | 146 | 92 | 4 | 10 | 154 | 13 | 146 | 2.89e-14 | 69.3 |
| Msa0932380 | MtrunA17_Chr6g0460941 | 36.364 | 88 | 54 | 2 | 10 | 96 | 8 | 94 | 5.35e-14 | 65.5 |
| Msa0932380 | MtrunA17_Chr5g0435641 | 29.245 | 106 | 73 | 2 | 7 | 111 | 5 | 109 | 1.28e-13 | 67.0 |
| Msa0932380 | MtrunA17_Chr7g0261031 | 33.000 | 100 | 65 | 2 | 10 | 108 | 9 | 107 | 1.99e-13 | 67.0 |
| Msa0932380 | MtrunA17_Chr2g0326041 | 52.083 | 48 | 23 | 0 | 10 | 57 | 34 | 81 | 6.85e-13 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0932380 | AT3G47870.1 | 56.731 | 104 | 44 | 1 | 9 | 112 | 36 | 138 | 4.99e-36 | 129 |
| Msa0932380 | AT3G13850.1 | 43.919 | 148 | 78 | 3 | 8 | 152 | 35 | 180 | 1.97e-31 | 116 |
| Msa0932380 | AT3G27650.1 | 43.000 | 100 | 56 | 1 | 7 | 106 | 37 | 135 | 6.42e-25 | 96.3 |
| Msa0932380 | AT5G63090.4 | 42.727 | 110 | 62 | 1 | 7 | 116 | 9 | 117 | 1.16e-24 | 96.3 |
| Msa0932380 | AT5G63090.3 | 42.727 | 110 | 62 | 1 | 7 | 116 | 9 | 117 | 1.16e-24 | 96.3 |
| Msa0932380 | AT5G63090.2 | 42.727 | 110 | 62 | 1 | 7 | 116 | 9 | 117 | 1.16e-24 | 96.3 |
| Msa0932380 | AT5G63090.1 | 42.727 | 110 | 62 | 1 | 7 | 116 | 9 | 117 | 1.16e-24 | 96.3 |
| Msa0932380 | AT1G65620.1 | 48.193 | 83 | 42 | 1 | 7 | 89 | 7 | 88 | 5.24e-24 | 95.1 |
| Msa0932380 | AT1G65620.4 | 48.193 | 83 | 42 | 1 | 7 | 89 | 7 | 88 | 5.24e-24 | 95.1 |
| Msa0932380 | AT1G65620.3 | 48.193 | 83 | 42 | 1 | 7 | 89 | 7 | 88 | 5.24e-24 | 95.1 |
| Msa0932380 | AT1G65620.5 | 48.193 | 83 | 42 | 1 | 7 | 89 | 7 | 88 | 5.24e-24 | 95.1 |
| Msa0932380 | AT1G65620.2 | 48.193 | 83 | 42 | 1 | 7 | 89 | 7 | 88 | 5.24e-24 | 95.1 |
| Msa0932380 | AT5G66870.1 | 42.157 | 102 | 58 | 1 | 10 | 111 | 8 | 108 | 1.12e-23 | 96.7 |
| Msa0932380 | AT3G26660.1 | 39.130 | 115 | 67 | 2 | 8 | 120 | 4 | 117 | 4.13e-23 | 90.5 |
| Msa0932380 | AT1G31320.1 | 46.316 | 95 | 47 | 2 | 5 | 96 | 6 | 99 | 8.98e-23 | 91.3 |
| Msa0932380 | AT3G26620.1 | 38.095 | 105 | 64 | 1 | 8 | 112 | 4 | 107 | 5.33e-22 | 87.4 |
| Msa0932380 | AT1G07900.1 | 40.000 | 115 | 67 | 2 | 10 | 124 | 34 | 146 | 5.43e-22 | 89.7 |
| Msa0932380 | AT1G72980.1 | 41.964 | 112 | 63 | 2 | 9 | 119 | 13 | 123 | 7.51e-22 | 89.7 |
| Msa0932380 | AT2G30130.1 | 39.474 | 114 | 67 | 2 | 10 | 123 | 9 | 120 | 7.97e-21 | 86.7 |
| Msa0932380 | AT2G28500.1 | 38.261 | 115 | 69 | 2 | 10 | 124 | 56 | 168 | 2.49e-20 | 86.3 |
| Msa0932380 | AT2G30340.2 | 39.796 | 98 | 58 | 1 | 10 | 107 | 54 | 150 | 6.17e-20 | 85.9 |
| Msa0932380 | AT2G30340.1 | 39.796 | 98 | 58 | 1 | 10 | 107 | 53 | 149 | 6.88e-20 | 85.5 |
| Msa0932380 | AT2G23660.2 | 41.584 | 101 | 58 | 1 | 10 | 110 | 6 | 105 | 6.89e-20 | 86.3 |
| Msa0932380 | AT2G23660.3 | 41.584 | 101 | 58 | 1 | 10 | 110 | 6 | 105 | 6.89e-20 | 86.3 |
| Msa0932380 | AT2G23660.1 | 41.584 | 101 | 58 | 1 | 10 | 110 | 6 | 105 | 6.89e-20 | 86.3 |
| Msa0932380 | AT3G11090.1 | 29.518 | 166 | 103 | 3 | 5 | 170 | 7 | 158 | 1.66e-19 | 82.4 |
| Msa0932380 | AT2G40470.2 | 38.776 | 98 | 59 | 1 | 10 | 107 | 21 | 117 | 1.97e-19 | 83.2 |
| Msa0932380 | AT1G16530.1 | 36.752 | 117 | 62 | 4 | 4 | 109 | 6 | 121 | 3.29e-19 | 81.6 |
| Msa0932380 | AT2G40470.1 | 38.776 | 98 | 59 | 1 | 10 | 107 | 46 | 142 | 5.03e-19 | 82.4 |
| Msa0932380 | AT5G15060.1 | 47.297 | 74 | 38 | 1 | 10 | 82 | 18 | 91 | 7.36e-19 | 80.1 |
| Msa0932380 | AT1G06280.1 | 39.362 | 94 | 52 | 3 | 8 | 101 | 23 | 111 | 1.98e-17 | 77.8 |
| Msa0932380 | AT3G50510.1 | 37.383 | 107 | 65 | 2 | 10 | 115 | 13 | 118 | 2.07e-17 | 77.8 |
| Msa0932380 | AT3G50510.2 | 37.383 | 107 | 65 | 2 | 10 | 115 | 13 | 118 | 2.07e-17 | 77.8 |
| Msa0932380 | AT2G19820.1 | 35.354 | 99 | 61 | 1 | 1 | 96 | 1 | 99 | 4.03e-17 | 75.1 |
| Msa0932380 | AT2G42430.1 | 29.655 | 145 | 100 | 2 | 10 | 153 | 16 | 159 | 8.04e-17 | 77.0 |
| Msa0932380 | AT4G00210.1 | 34.058 | 138 | 83 | 4 | 10 | 145 | 12 | 143 | 2.93e-16 | 75.1 |
| Msa0932380 | AT2G42440.1 | 32.407 | 108 | 71 | 2 | 10 | 116 | 8 | 114 | 2.27e-15 | 73.2 |
| Msa0932380 | AT4G00220.1 | 35.644 | 101 | 63 | 2 | 12 | 111 | 20 | 119 | 2.87e-15 | 72.4 |
| Msa0932380 | AT3G58190.1 | 34.579 | 107 | 68 | 2 | 10 | 115 | 12 | 117 | 3.33e-15 | 72.0 |
| Msa0932380 | AT2G45420.1 | 34.653 | 101 | 64 | 2 | 12 | 111 | 40 | 139 | 1.71e-14 | 70.9 |
| Msa0932380 | AT3G03760.1 | 35.294 | 102 | 64 | 2 | 10 | 110 | 52 | 152 | 4.12e-14 | 70.1 |
| Msa0932380 | AT5G35900.1 | 29.412 | 102 | 71 | 1 | 10 | 111 | 6 | 106 | 1.73e-13 | 67.0 |
| Msa0932380 | AT2G45410.1 | 36.634 | 101 | 62 | 2 | 12 | 111 | 19 | 118 | 3.00e-13 | 66.2 |
| Msa0932380 | AT2G31310.1 | 29.508 | 122 | 76 | 3 | 10 | 122 | 8 | 128 | 5.87e-13 | 65.5 |
| Msa0932380 | AT5G06080.1 | 31.959 | 97 | 64 | 2 | 9 | 104 | 7 | 102 | 1.50e-12 | 63.9 |
Find 27 sgRNAs with CRISPR-Local
Find 33 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACCAACATTGCTAGATAT+TGG | 0.233878 | 6_3:+452260 | Msa0932370:intron |
| TCACCAACATTGTTAAATAT+TGG | 0.234385 | 6_3:+452464 | Msa0932370:intron |
| CTTTCTTCTTTGATATTTGC+AGG | 0.243555 | 6_3:+452847 | Msa0932370:intron |
| ATTATTATGTGATAATAATA+AGG | 0.272056 | 6_3:+452437 | Msa0932370:intron |
| TGGATGTCTTGGTCTTATTA+TGG | 0.281895 | 6_3:-452633 | Msa0932380:CDS |
| GGTTTATCGGCTGGAAAATA+AGG | 0.296290 | 6_3:+452800 | Msa0932370:intron |
| ATAATGAATACTCAAGTTCT+TGG | 0.299220 | 6_3:-452419 | Msa0932380:CDS |
| GCCAATGCTCATCGTTTGTT+TGG | 0.347008 | 6_3:-452767 | Msa0932380:CDS |
| TAAGGAGCTAAAGGGCAATC+TGG | 0.416523 | 6_3:+452818 | Msa0932370:intron |
| ACCACTAGTTCTCAAATTCC+AGG | 0.434386 | 6_3:-452290 | Msa0932380:CDS |
| ATTCCAATATTTAACAATGT+TGG | 0.448330 | 6_3:-452467 | Msa0932380:CDS |
| TCTTCTACATTTCTCTTCAT+CGG | 0.464845 | 6_3:-452522 | Msa0932380:CDS |
| GGAATTGAAGAACTAGTAGA+AGG | 0.471090 | 6_3:+452485 | Msa0932370:intron |
| TTCCCAAGTCATGGATGTCT+TGG | 0.482571 | 6_3:-452644 | Msa0932380:CDS |
| GCTGGAAAATAAGGAGCTAA+AGG | 0.488184 | 6_3:+452809 | Msa0932370:intron |
| CTAGATATTGGATTAATACC+TGG | 0.493908 | 6_3:+452272 | Msa0932370:intron |
| CTGGAAAATAAGGAGCTAAA+GGG | 0.495690 | 6_3:+452810 | Msa0932370:intron |
| GAATGATCCATTGAAAAGTA+AGG | 0.496518 | 6_3:+452323 | Msa0932370:intron |
| AATCCAATATCTAGCAATGT+TGG | 0.514330 | 6_3:-452263 | Msa0932380:CDS |
| AGACCAAGACATCCATGACT+TGG | 0.541471 | 6_3:+452641 | Msa0932370:intron |
| ACCAAACAAACGATGAGCAT+TGG | 0.553402 | 6_3:+452766 | Msa0932370:intron |
| CGTGCAAGATTCCCAAGTCA+TGG | 0.565788 | 6_3:-452653 | Msa0932380:CDS |
| GTAAATTTGTTAACATCGTG+AGG | 0.570877 | 6_3:+452229 | Msa0932370:intron |
| ACCTGGAATTTGAGAACTAG+TGG | 0.587717 | 6_3:+452289 | Msa0932370:intron |
| GACCAAGACATCCATGACTT+GGG | 0.599785 | 6_3:+452642 | Msa0932370:intron |
| TTTGTTTGGTATTTCCAACA+TGG | 0.612102 | 6_3:-452753 | Msa0932380:CDS |
| GGAATTTGAGAACTAGTGGT+AGG | 0.664884 | 6_3:+452293 | Msa0932370:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATTATGTGATAATAATA+AGG | + | chr6_3:452685-452704 | Msa0932370:intron | 10.0% |
| !! | ATTCCAATATTTAACAATGT+TGG | - | chr6_3:452652-452671 | Msa0932380:CDS | 20.0% |
| !!! | GAAGTCAATTATTTTTGAGT+CGG | - | chr6_3:452438-452457 | Msa0932380:CDS | 25.0% |
| ! | TCACCAACATTGTTAAATAT+TGG | + | chr6_3:452658-452677 | Msa0932370:intron | 25.0% |
| ! | ATAATGAATACTCAAGTTCT+TGG | - | chr6_3:452700-452719 | Msa0932380:CDS | 25.0% |
| !!! | TTTTCTACCTTACTTTTCAA+TGG | - | chr6_3:452789-452808 | Msa0932380:CDS | 25.0% |
| GGATATTCACAGAAAAAACA+AGG | - | chr6_3:452240-452259 | Msa0932380:CDS | 30.0% | |
| CTTTCTTCTTTGATATTTGC+AGG | + | chr6_3:452275-452294 | Msa0932370:intron | 30.0% | |
| TTTGTTTGGTATTTCCAACA+TGG | - | chr6_3:452366-452385 | Msa0932380:CDS | 30.0% | |
| TCTTCTACATTTCTCTTCAT+CGG | - | chr6_3:452597-452616 | Msa0932380:CDS | 30.0% | |
| GAATGATCCATTGAAAAGTA+AGG | + | chr6_3:452799-452818 | Msa0932370:intron | 30.0% | |
| CTAGATATTGGATTAATACC+TGG | + | chr6_3:452850-452869 | Msa0932370:intron | 30.0% | |
| AATCCAATATCTAGCAATGT+TGG | - | chr6_3:452856-452875 | Msa0932380:CDS | 30.0% | |
| TTACCAACATTGCTAGATAT+TGG | + | chr6_3:452862-452881 | Msa0932370:intron | 30.0% | |
| CTGGAAAATAAGGAGCTAAA+GGG | + | chr6_3:452312-452331 | Msa0932370:intron | 35.0% | |
| ! | TTTTAGCATCTTCACCATGT+TGG | + | chr6_3:452383-452402 | Msa0932370:intron | 35.0% |
| !! | TGGATGTCTTGGTCTTATTA+TGG | - | chr6_3:452486-452505 | Msa0932380:CDS | 35.0% |
| GGAATTGAAGAACTAGTAGA+AGG | + | chr6_3:452637-452656 | Msa0932370:intron | 35.0% | |
| GCTGGAAAATAAGGAGCTAA+AGG | + | chr6_3:452313-452332 | Msa0932370:intron | 40.0% | |
| ! | GGTTTATCGGCTGGAAAATA+AGG | + | chr6_3:452322-452341 | Msa0932370:intron | 40.0% |
| !!! | AGCATTTTTGGTTTATCGGC+TGG | + | chr6_3:452331-452350 | Msa0932370:intron | 40.0% |
| !!! | GGCGAGCATTTTTGGTTTAT+CGG | + | chr6_3:452335-452354 | Msa0932370:intron | 40.0% |
| ACCAAACAAACGATGAGCAT+TGG | + | chr6_3:452356-452375 | Msa0932370:intron | 40.0% | |
| GGAATTTGAGAACTAGTGGT+AGG | + | chr6_3:452829-452848 | Msa0932370:intron | 40.0% | |
| ! | ACCACTAGTTCTCAAATTCC+AGG | - | chr6_3:452829-452848 | Msa0932380:CDS | 40.0% |
| ACCTGGAATTTGAGAACTAG+TGG | + | chr6_3:452833-452852 | Msa0932370:intron | 40.0% | |
| TAAGGAGCTAAAGGGCAATC+TGG | + | chr6_3:452304-452323 | Msa0932370:intron | 45.0% | |
| !!! | TGAGCATTGGCGAGCATTTT+TGG | + | chr6_3:452343-452362 | Msa0932370:intron | 45.0% |
| GCCAATGCTCATCGTTTGTT+TGG | - | chr6_3:452352-452371 | Msa0932380:CDS | 45.0% | |
| TTCCCAAGTCATGGATGTCT+TGG | - | chr6_3:452475-452494 | Msa0932380:CDS | 45.0% | |
| GACCAAGACATCCATGACTT+GGG | + | chr6_3:452480-452499 | Msa0932370:intron | 45.0% | |
| AGACCAAGACATCCATGACT+TGG | + | chr6_3:452481-452500 | Msa0932370:intron | 45.0% | |
| CGTGCAAGATTCCCAAGTCA+TGG | - | chr6_3:452466-452485 | Msa0932380:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 452238 | 452903 | 452238 | ID=Msa0932380;Name=Msa0932380 |
| chr6_3 | mRNA | 452238 | 452903 | 452238 | ID=Msa0932380-mRNA-1;Parent=Msa0932380;Name=Msa0932380-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|-1|0|1|-1|1|1|0|221 |
| chr6_3 | exon | 452238 | 452903 | 452238 | ID=Msa0932380-mRNA-1:exon:187;Parent=Msa0932380-mRNA-1 |
| chr6_3 | CDS | 452238 | 452903 | 452238 | ID=Msa0932380-mRNA-1:cds;Parent=Msa0932380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
