AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0933020


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0933020 MtrunA17_Chr6g0449861 85.106 329 38 4 291 617 9 328 0.0 548
Msa0933020 MtrunA17_Chr6g0449861 56.857 350 87 6 9 295 7 355 4.52e-118 355
Msa0933020 MtrunA17_Chr6g0449851 83.810 315 21 3 11 295 1 315 0.0 526
Msa0933020 MtrunA17_Chr6g0449851 63.720 328 78 5 291 617 1 288 4.36e-135 397
Msa0933020 MtrunA17_Chr6g0457851 67.164 335 94 3 287 617 7 329 1.43e-153 446
Msa0933020 MtrunA17_Chr6g0457851 55.618 356 97 4 1 295 1 356 1.08e-122 367
Msa0933020 MtrunA17_Chr1g0212151 61.877 341 97 5 291 617 1 322 3.91e-130 385
Msa0933020 MtrunA17_Chr1g0212151 52.528 356 89 8 11 295 1 347 1.25e-106 325
Msa0933020 MtrunA17_Chr1g0212471 31.844 179 121 1 291 469 1 178 9.37e-28 110
Msa0933020 MtrunA17_Chr1g0212471 34.615 156 87 2 11 151 1 156 4.79e-23 97.1
Msa0933020 MtrunA17_Chr4g0059631 36.842 171 100 2 291 461 1 163 1.25e-27 112
Msa0933020 MtrunA17_Chr4g0059631 35.294 153 86 3 11 150 1 153 7.67e-23 98.2
Msa0933020 MtrunA17_Chr2g0303981 36.842 152 91 2 295 445 7 154 7.24e-25 102
Msa0933020 MtrunA17_Chr2g0303981 35.333 150 84 3 13 149 5 154 2.14e-21 92.4
Msa0933020 MtrunA17_Chr4g0022641 34.132 167 107 1 291 457 1 164 1.49e-24 106
Msa0933020 MtrunA17_Chr4g0022641 34.254 181 104 4 11 178 1 179 5.16e-24 104
Msa0933020 MtrunA17_Chr5g0432691 31.515 165 99 5 291 447 1 159 8.49e-15 72.4
Msa0933020 MtrunA17_Chr3g0107351 31.481 162 97 5 294 447 3 158 1.13e-14 72.0
Msa0933020 MtrunA17_Chr3g0107341 34.356 163 91 6 294 447 3 158 2.19e-14 71.2
Msa0933020 MtrunA17_Chr8g0380021 29.333 150 93 3 10 151 16 160 7.44e-14 71.6
Msa0933020 MtrunA17_Chr2g0284911 29.412 153 89 3 10 151 15 159 1.39e-13 71.2
Msa0933020 MtrunA17_Chr2g0283941 36.036 111 60 4 291 398 1 103 2.04e-13 70.5
Msa0933020 MtrunA17_Chr3g0107361 32.099 162 96 6 294 447 3 158 2.07e-13 68.6
Msa0933020 MtrunA17_Chr3g0107381 23.504 234 147 8 291 505 1 221 3.90e-13 69.3
Msa0933020 MtrunA17_Chr1g0197321 33.607 122 72 4 291 412 1 113 4.94e-13 67.4
Msa0933020 MtrunA17_Chr3g0107331 34.259 108 64 3 295 401 4 105 1.46e-12 65.9
Msa0933020 MtrunA17_Chr5g0420351 29.688 128 77 3 291 418 1 115 2.15e-12 65.5
Msa0933020 MtrunA17_Chr2g0279821 28.144 167 94 5 11 159 1 159 2.26e-12 67.4
Msa0933020 MtrunA17_Chr3g0134451 34.694 98 58 2 11 103 1 97 2.53e-12 68.6
Msa0933020 MtrunA17_Chr5g0425191 47.059 51 27 0 11 61 1 51 9.89e-12 62.0
Msa0933020 MtrunA17_Chr3g0110131 26.122 245 143 8 291 505 1 237 1.05e-11 65.5
Msa0933020 MtrunA17_Chr1g0197261 28.994 169 93 5 291 445 1 156 1.44e-11 63.2
Msa0933020 MtrunA17_Chr4g0014321 37.288 118 59 5 291 407 1 104 2.85e-11 63.9
Msa0933020 MtrunA17_Chr8g0351751 33.962 106 61 4 291 393 1 100 2.90e-11 64.3
Msa0933020 MtrunA17_Chr4g0061691 28.846 156 85 6 11 151 1 145 3.91e-11 63.5
Msa0933020 MtrunA17_Chr1g0173161 48.980 49 25 0 11 59 1 49 6.41e-11 58.9
Msa0933020 MtrunA17_Chr7g0246381 44.898 49 27 0 11 59 1 49 6.78e-11 58.5
Msa0933020 MtrunA17_Chr3g0097101 25.325 154 96 3 10 152 15 160 6.83e-11 63.2
Msa0933020 MtrunA17_Chr5g0404951 29.252 147 92 4 11 149 1 143 7.14e-11 62.8
Msa0933020 MtrunA17_Chr3g0142191 30.137 146 88 4 11 149 1 139 7.69e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0933020 AT5G55690.1 31.679 262 131 11 296 547 6 229 5.77e-21 94.0
Msa0933020 AT5G55690.1 38.710 124 56 2 11 121 1 117 2.85e-16 80.1
Msa0933020 AT5G55690.2 31.679 262 131 11 296 547 6 229 5.77e-21 94.0
Msa0933020 AT5G55690.2 38.710 124 56 2 11 121 1 117 2.85e-16 80.1
Msa0933020 AT5G58890.1 34.507 142 88 3 296 435 6 144 8.93e-17 81.6
Msa0933020 AT3G18650.1 37.037 135 71 5 306 434 31 157 1.26e-13 73.6
Msa0933020 AT3G18650.1 35.200 125 69 4 26 139 31 154 2.84e-11 66.2
Msa0933020 AT3G57230.1 27.815 151 91 6 11 151 1 143 6.02e-13 69.3
Msa0933020 AT3G57230.4 27.815 151 91 6 11 151 1 143 6.02e-13 69.3
Msa0933020 AT1G22590.2 29.814 161 102 4 291 446 1 155 1.36e-12 66.6
Msa0933020 AT3G57230.2 27.517 149 90 6 11 149 1 141 3.88e-12 64.7
Msa0933020 AT2G22630.1 55.102 49 22 0 11 59 1 49 4.87e-12 66.6
Msa0933020 AT2G22630.2 55.102 49 22 0 11 59 1 49 4.87e-12 66.6
Msa0933020 AT4G18960.1 28.387 155 92 4 8 151 14 160 5.84e-12 66.6
Msa0933020 AT4G09960.5 28.289 152 90 4 11 151 11 154 7.57e-12 66.2
Msa0933020 AT5G23260.2 30.612 147 92 3 11 151 1 143 7.94e-12 66.2
Msa0933020 AT4G09960.6 28.289 152 90 4 11 151 2 145 8.06e-12 65.9
Msa0933020 AT4G09960.1 28.289 152 90 4 11 151 1 144 8.17e-12 65.9
Msa0933020 AT3G58780.1 26.144 153 94 3 10 151 15 159 8.48e-12 66.2
Msa0933020 AT3G58780.5 26.144 153 94 3 10 151 21 165 8.78e-12 66.2
Msa0933020 AT5G23260.4 30.464 151 95 3 7 151 13 159 8.97e-12 66.6
Msa0933020 AT2G42830.2 26.797 153 93 3 10 151 15 159 9.31e-12 66.2
Msa0933020 AT2G42830.1 26.797 153 93 3 10 151 15 159 9.58e-12 65.9
Msa0933020 AT4G09960.2 27.815 151 90 4 11 150 1 143 1.06e-11 65.1
Msa0933020 AT4G37940.3 27.815 151 91 3 11 151 1 143 1.17e-11 64.3
Msa0933020 AT4G09960.3 28.105 153 91 4 10 151 26 170 1.36e-11 65.9
Msa0933020 AT3G57390.3 46.667 75 32 2 11 79 1 73 1.38e-11 65.1
Msa0933020 AT5G23260.3 33.010 103 63 1 11 107 1 103 1.60e-11 65.1
Msa0933020 AT5G23260.1 32.710 107 66 1 7 107 13 119 2.05e-11 65.5
Msa0933020 AT4G37940.1 27.815 151 91 3 11 151 1 143 2.16e-11 64.7
Msa0933020 AT3G57390.1 46.667 75 32 2 11 79 1 73 2.46e-11 65.1
Msa0933020 AT3G05860.2 36.364 77 43 2 291 367 1 71 2.64e-11 63.9
Msa0933020 AT3G05860.3 37.662 77 42 3 291 367 1 71 2.94e-11 64.7
Msa0933020 AT4G37940.4 28.188 149 89 3 11 149 1 141 3.52e-11 63.5
Msa0933020 AT4G09960.4 28.105 153 91 4 10 151 95 239 3.76e-11 65.5
Msa0933020 AT3G05860.1 37.662 77 42 3 291 367 1 71 3.79e-11 64.3
Msa0933020 AT1G31640.1 22.467 227 144 8 294 512 3 205 4.02e-11 66.2
Msa0933020 AT3G58780.4 25.806 155 96 3 9 152 14 160 4.19e-11 64.7
Msa0933020 AT3G58780.2 24.648 142 103 1 10 151 15 152 4.94e-11 63.9
Msa0933020 AT5G20240.2 49.020 51 26 0 11 61 1 51 7.84e-11 61.2
Msa0933020 AT1G77950.3 40.278 72 38 1 11 77 1 72 8.92e-11 63.2
Msa0933020 AT1G77950.2 40.278 72 38 1 11 77 1 72 8.92e-11 63.2
Msa0933020 AT1G77950.1 40.278 72 38 1 11 77 1 72 8.92e-11 63.2
Msa0933020 AT1G77950.4 40.278 72 38 1 11 77 1 72 8.92e-11 63.2
Msa0933020 AT5G27960.1 27.742 155 105 3 295 448 3 151 9.34e-11 63.9
Msa0933020 AT5G62165.6 28.667 150 88 4 11 149 1 142 9.48e-11 60.8
Msa0933020 AT5G62165.9 28.667 150 88 4 11 149 1 142 9.48e-11 60.8
Msa0933020 AT5G62165.7 28.667 150 88 4 11 149 1 142 9.48e-11 60.8
Msa0933020 AT5G62165.8 28.667 150 88 4 11 149 1 142 9.48e-11 60.8
Msa0933020 AT5G62165.13 28.667 150 88 4 11 149 1 142 9.48e-11 60.8

Find 113 sgRNAs with CRISPR-Local

Find 467 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTTCTTCATATCGATTT+TGG 0.101762 6_3:-1513841 None:intergenic
TCCCATGAATATCTACTTTA+TGG 0.106807 6_3:+1513981 Msa0933020:CDS
GTGTCTTTCGGCCATGTTTC+AGG 0.186338 6_3:-1519809 None:intergenic
GATGAATCTTACAATTCTTT+TGG 0.252372 6_3:+1513459 Msa0933020:CDS
GTATTTCCATTGTAATAGTA+TGG 0.279464 6_3:-1520526 None:intergenic
TCTTGAACATCATAGGTCTT+AGG 0.310978 6_3:-1513351 None:intergenic
CCTTACTTGACCTCAAATTC+AGG 0.312584 6_3:+1513597 Msa0933020:CDS
ATCTTCCTAGATTTCTCCTT+TGG 0.315866 6_3:-1519665 None:intergenic
TATGCTAGAAGGAGATCTTC+TGG 0.319876 6_3:+1520087 Msa0933020:CDS
AGGCTACTTCGTTCCATTCA+TGG 0.325169 6_3:-1514045 None:intergenic
ACTTTATGGATCCTATGATA+TGG 0.335816 6_3:+1513995 Msa0933020:CDS
CAACATATCCTTGGCCTTCA+AGG 0.352632 6_3:-1513248 None:intergenic
AAGCTCTCAACCTTCCCTTA+TGG 0.354140 6_3:+1513731 Msa0933020:CDS
GATGAATCTTTCAATTCTCT+TGG 0.356712 6_3:+1519995 Msa0933020:CDS
TCAAGTAAGGAGAACTAATA+AGG 0.363002 6_3:-1513584 None:intergenic
AAAATATTCTTGAACATCAT+AGG 0.366937 6_3:-1519894 None:intergenic
GGGTCGTGGAAGAATATCTA+TGG 0.367126 6_3:+1513098 Msa0933020:CDS
CTTCTACCATGTAGAGTCTA+AGG 0.376305 6_3:+1520366 Msa0933020:CDS
CTCTATGCTCCCAACTTTGA+AGG 0.376410 6_3:+1519770 Msa0933020:CDS
GAGGTTATTTGCTAGGATCT+TGG 0.377459 6_3:+1520030 Msa0933020:CDS
TACCCTTGGCCTTCAAAGTT+GGG 0.397006 6_3:-1519779 None:intergenic
AAAATATTCTTGAACATCAT+AGG 0.416188 6_3:-1513358 None:intergenic
TATCCTTGGCCTTCAAGGTT+GGG 0.419769 6_3:-1513243 None:intergenic
GTATTGCAAAAGAGAAAGAT+TGG 0.420157 6_3:+1519689 Msa0933020:CDS
CTGTATGCTCCCAACCTTGA+AGG 0.420817 6_3:+1513234 Msa0933020:CDS
CTAAAGATGAATATGCTAGA+AGG 0.421397 6_3:+1520076 Msa0933020:CDS
TCATTCCAAAGGAGAAATCT+AGG 0.429671 6_3:+1519660 Msa0933020:CDS
TTGAATACTATCCATATCAT+AGG 0.430128 6_3:-1514006 None:intergenic
GAGCTTTGTGCCAATTGAAT+TGG 0.430763 6_3:-1513714 None:intergenic
TGCACGAGATTGAGGCTACT+TGG 0.432844 6_3:-1520178 None:intergenic
AACATCAACATCACAAAGAA+TGG 0.436469 6_3:-1513202 None:intergenic
ATCCATAAAGTAGATATTCA+TGG 0.445056 6_3:-1513983 None:intergenic
ACTTGGATTTGAGTCTAAGT+AGG 0.446409 6_3:-1520161 None:intergenic
ATACCCTTGGCCTTCAAAGT+TGG 0.453181 6_3:-1519780 None:intergenic
AGCATCAACATCACAAAGAA+TGG 0.454348 6_3:-1519738 None:intergenic
ACTATGACACAACAATTGAT+AGG 0.455411 6_3:+1513325 Msa0933020:CDS
ACTATAACACAACAATTGAT+AGG 0.461207 6_3:+1519861 Msa0933020:CDS
TGGATTAAATATTAGATTCG+AGG 0.461248 6_3:+1511987 Msa0933020:intron
CTCTTGGACATGAACAATTG+AGG 0.461839 6_3:+1520011 Msa0933020:CDS
GGAGGAGTAGGCATAGCAAT+AGG 0.462020 6_3:-1513936 None:intergenic
ATGGTAGAAGCTCGGTGCTC+GGG 0.462540 6_3:-1520353 None:intergenic
TTGAATTGGCCAAAACCCTA+TGG 0.463206 6_3:-1513700 None:intergenic
ATCTATGGAACTCATTCAAA+AGG 0.463531 6_3:+1513113 Msa0933020:CDS
AACAATTGAGGTTATTTGCT+AGG 0.466918 6_3:+1520023 Msa0933020:CDS
TTTCAGGTTCAGCATACCCT+TGG 0.467005 6_3:-1519793 None:intergenic
CAACTGTTCAACTCCATGAA+TGG 0.470369 6_3:+1514032 Msa0933020:CDS
TTATCACAAATATTCATCAA+TGG 0.474002 6_3:-1513672 None:intergenic
GAACTTCTCTTTGCGCACTT+TGG 0.475226 6_3:-1519951 None:intergenic
TCAAGATGAAGTATCAAACT+TGG 0.476541 6_3:+1519972 Msa0933020:CDS
TTTCCATTGTAATAGTATGA+TGG 0.479664 6_3:-1513891 None:intergenic
TTAAAATCAATCTGCTTGCA+AGG 0.480005 6_3:-1520412 None:intergenic
ATATTGTGTTCATAGAAAAT+GGG 0.480214 6_3:+1513078 Msa0933020:intron
ATGCTAGAAGGAGATCTTCT+GGG 0.483728 6_3:+1520088 Msa0933020:CDS
AAGCTCTCAACCCTCTCATA+TGG 0.483915 6_3:+1520291 Msa0933020:CDS
CCTGAATTTGAGGTCAAGTA+AGG 0.484340 6_3:-1513597 None:intergenic
TAAGTGGCCAAAACCCTAAA+GGG 0.486281 6_3:-1520258 None:intergenic
AAAGTAGATATTCATGGGAT+AGG 0.486977 6_3:-1513977 None:intergenic
TTTCAGGTTCAACATATCCT+TGG 0.488478 6_3:-1513257 None:intergenic
TTATCACTAATATTCATCAA+TGG 0.491553 6_3:-1520232 None:intergenic
TAACATTAGCATCAACATGA+TGG 0.501943 6_3:-1520441 None:intergenic
ATATCCTTGGCCTTCAAGGT+TGG 0.502086 6_3:-1513244 None:intergenic
GAAGTTGGTACCTGAATTTG+AGG 0.503776 6_3:-1513607 None:intergenic
CAAAATCGATATGAAGAAGA+AGG 0.504284 6_3:+1513842 Msa0933020:CDS
GATAACATTGCAAAAGAGAA+AGG 0.505631 6_3:+1513149 Msa0933020:CDS
AAGCTCTCAACCTTCTCCTA+TGG 0.506501 6_3:+1520327 Msa0933020:CDS
GCTCCCAACTTTGAAGGCCA+AGG 0.509495 6_3:+1519776 Msa0933020:CDS
CAAAATCAGTATGAAGAAGA+AGG 0.510960 6_3:+1520474 Msa0933020:CDS
TTGCCATCATACTATTACAA+TGG 0.513046 6_3:+1513888 Msa0933020:CDS
TTGTGAACTGGAAACCATAA+GGG 0.517232 6_3:-1513745 None:intergenic
ATAAGTGGCCAAAACCCTAA+AGG 0.517760 6_3:-1520259 None:intergenic
CTTGGATTTGAGTCTAAGTA+GGG 0.520886 6_3:-1520160 None:intergenic
TAAAGATGATGTATCCAACT+TGG 0.530838 6_3:+1513436 Msa0933020:CDS
CATGGTAGAAGCTCGGTGCT+CGG 0.531578 6_3:-1520354 None:intergenic
CTTCAAGGTTGGGAGCATAC+AGG 0.533279 6_3:-1513233 None:intergenic
TTGGCACCATACTATTACAA+TGG 0.540050 6_3:+1520520 Msa0933020:CDS
GGAAGAGTAGGCATAGCAAT+GGG 0.540404 6_3:-1520568 None:intergenic
GAGCTTTGTCCCGATATAAG+TGG 0.540760 6_3:-1520274 None:intergenic
TGAATTGGCCAAAACCCTAT+GGG 0.542091 6_3:-1513699 None:intergenic
AGGTTTGCAAGATTCTGAAA+AGG 0.545328 6_3:-1513957 None:intergenic
TCCATAAAGTAGATATTCAT+GGG 0.546951 6_3:-1513982 None:intergenic
CTCGGTGCTCGGGAAGCCAT+AGG 0.547191 6_3:-1520343 None:intergenic
AGATTCTGAAAAGGAGGAGT+AGG 0.549609 6_3:-1513948 None:intergenic
ATGCATACCAACATGTCTCA+AGG 0.563493 6_3:+1513636 Msa0933020:CDS
TGCAGTTGAAACCATATGAG+AGG 0.566645 6_3:-1520302 None:intergenic
GGTATGCATGAGATTGAAGT+TGG 0.570442 6_3:-1513622 None:intergenic
TGTTCATAGAAAATGGGTCG+TGG 0.571043 6_3:+1513084 Msa0933020:intron
GACTCTACATGGTAGAAGCT+CGG 0.573653 6_3:-1520361 None:intergenic
AACATTAGCATCAACATGAT+GGG 0.577246 6_3:-1520440 None:intergenic
ACATTGCAAAAGAGAAAGGA+TGG 0.582137 6_3:+1513153 Msa0933020:CDS
CAAGATGAAGTATCAAACTT+GGG 0.583942 6_3:+1519973 Msa0933020:CDS
TTGTAAGATTCATCCCAAGT+TGG 0.584895 6_3:-1513450 None:intergenic
ATCTGTGGAATTCATTCCAA+AGG 0.586943 6_3:+1519649 Msa0933020:CDS
CTCCCAACTTTGAAGGCCAA+GGG 0.588006 6_3:+1519777 Msa0933020:CDS
AAAGATGATGTATCCAACTT+GGG 0.588589 6_3:+1513437 Msa0933020:CDS
TACCATGTAGAGTCTAAGGC+GGG 0.596889 6_3:+1520370 Msa0933020:CDS
TCACTAATATTCATCAATGG+AGG 0.597003 6_3:-1520229 None:intergenic
GCTCCCAACCTTGAAGGCCA+AGG 0.597883 6_3:+1513240 Msa0933020:CDS
TAAAATCAATCTGCTTGCAA+GGG 0.599195 6_3:-1520411 None:intergenic
TACCCGCCTTAGACTCTACA+TGG 0.600460 6_3:-1520372 None:intergenic
AGGTGCAAAGAATTCTTCAA+AGG 0.603453 6_3:+1519837 Msa0933020:CDS
TTTGCAAGATTCTGAAAAGG+AGG 0.605154 6_3:-1513954 None:intergenic
TTTACAATGTGCGTAAAGAG+AGG 0.608136 6_3:+1513412 Msa0933020:CDS
TGCATACCAACATGTCTCAA+GGG 0.610432 6_3:+1513637 Msa0933020:CDS
GCTCGGGAAGCCATAGGAGA+AGG 0.614300 6_3:-1520337 None:intergenic
AGGAAGAGTAGGCATAGCAA+TGG 0.623758 6_3:-1520569 None:intergenic
GGGTCGTGGAAGAGTATCTG+TGG 0.635324 6_3:+1519634 Msa0933020:intron
GGTATGCTGAACCTGAAACA+TGG 0.642114 6_3:+1519798 Msa0933020:CDS
TGGTTTAATAAAGAAAGCAA+AGG 0.644031 6_3:+1513173 Msa0933020:CDS
CTACCATGTAGAGTCTAAGG+CGG 0.656223 6_3:+1520369 Msa0933020:CDS
ATGGCCGAAAGACACAAAAG+AGG 0.657999 6_3:+1519817 Msa0933020:CDS
GAACTGGAAACCATAAGGGA+AGG 0.661731 6_3:-1513741 None:intergenic
GCGAAAAGATGAATCGCACA+AGG 0.697271 6_3:+1513554 Msa0933020:CDS
GCAGTTGAAACCATATGAGA+GGG 0.704855 6_3:-1520301 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATAT+GGG - chr6_3:1514260-1514279 None:intergenic 0.0%
!! TATATATATATATATATATA+TGG - chr6_3:1514261-1514280 None:intergenic 0.0%
!!! TAAATTTTTTTATTATTTTT+TGG - chr6_3:1515762-1515781 None:intergenic 0.0%
!!! TAAATTTTTTTATTATTTTT+TGG + chr6_3:1515762-1515781 Msa0933020:intron 0.0%
!! TTATATATAAAAAAAAAAAA+AGG + chr6_3:1516335-1516354 Msa0933020:intron 0.0%
!!! CTATATAATTTATGTTTTTA+GGG - chr6_3:1511687-1511706 None:intergenic 10.0%
!!! ACTATATAATTTATGTTTTT+AGG - chr6_3:1511688-1511707 None:intergenic 10.0%
!! ATTCTTAAAATAAATAAGAT+AGG - chr6_3:1511877-1511896 None:intergenic 10.0%
!!! TCATATTTTTTATTTATTTG+TGG + chr6_3:1512147-1512166 Msa0933020:intron 10.0%
!!! TTATTATTATTTTGGATTTT+GGG - chr6_3:1512246-1512265 None:intergenic 10.0%
!!! ATTATTATTATTTTGGATTT+TGG - chr6_3:1512247-1512266 None:intergenic 10.0%
!!! CATAATCATTATTATTATTT+TGG - chr6_3:1512254-1512273 None:intergenic 10.0%
!!! AATCATTGTTTTTATTTATT+TGG + chr6_3:1512405-1512424 Msa0933020:intron 10.0%
!!! AGAAATTTTATTAATAAAAG+TGG + chr6_3:1512552-1512571 Msa0933020:intron 10.0%
!!! TAAGACAATTATTTTTATTT+TGG + chr6_3:1512628-1512647 Msa0933020:intron 10.0%
!!! TTTTTAAAAAAAATATTACG+TGG - chr6_3:1514706-1514725 None:intergenic 10.0%
!!! TTTTCGATTTTTTAAATTTT+TGG - chr6_3:1515729-1515748 None:intergenic 10.0%
!!! AAAAACTATTAAGATTTTTT+TGG + chr6_3:1514958-1514977 Msa0933020:intron 10.0%
!!! AAAAAGATTTTTAAAAATTC+TGG + chr6_3:1515035-1515054 Msa0933020:intron 10.0%
!!! ATTTTCAAAATTAGAAAAAA+AGG + chr6_3:1515088-1515107 Msa0933020:intron 10.0%
!!! AGATTTTTTAAAAAATATTC+TGG + chr6_3:1515113-1515132 Msa0933020:intron 10.0%
!!! CACAATTTTAATAAAATATT+GGG - chr6_3:1515396-1515415 None:intergenic 10.0%
!!! TTTTCGATTTTTAAATTTTT+TGG + chr6_3:1515487-1515506 Msa0933020:intron 10.0%
!!! TAATATTTTTTCTGAATTTT+TGG + chr6_3:1515560-1515579 Msa0933020:intron 10.0%
!!! TGAATATTTTTATGATTTTT+TGG + chr6_3:1515608-1515627 Msa0933020:intron 10.0%
!!! TTTCGATTTTTAAAATTTTT+TGG + chr6_3:1515658-1515677 Msa0933020:intron 10.0%
!!! TGAATATTTTTATGTTTTTT+TGG + chr6_3:1515690-1515709 Msa0933020:intron 10.0%
!!! TTTTCGATTTTTTAAATTTT+TGG + chr6_3:1515729-1515748 Msa0933020:intron 10.0%
!!! TTTGTTGATTAAAAAAAATA+GGG - chr6_3:1516045-1516064 None:intergenic 10.0%
!!! ATTTGTTGATTAAAAAAAAT+AGG - chr6_3:1516046-1516065 None:intergenic 10.0%
!! AATTATTTAGATTAATTTCT+TGG - chr6_3:1517396-1517415 None:intergenic 10.0%
!!! TATTTTTTTATTTCCTTTTT+TGG + chr6_3:1517606-1517625 Msa0933020:intron 10.0%
!! TATTGTGTAAAATTAATTTA+CGG + chr6_3:1518616-1518635 Msa0933020:intron 10.0%
!! GTAATTAAAAAGTAAATAAA+AGG - chr6_3:1519508-1519527 None:intergenic 10.0%
!!! TTTGTTTGTTTCTATTTTTT+TGG + chr6_3:1511580-1511599 Msa0933020:intron 15.0%
!!! TTGTGTTTATTTTGATTAAA+AGG + chr6_3:1511605-1511624 Msa0933020:intron 15.0%
!! GATATGAATAAATAGTTTAA+TGG - chr6_3:1511911-1511930 None:intergenic 15.0%
!!! TAAAATTTCTTTTGTAGTTT+TGG + chr6_3:1511967-1511986 Msa0933020:intron 15.0%
!! ATAAGCAAAATAAAATACTA+TGG + chr6_3:1512329-1512348 Msa0933020:intron 15.0%
!! TAAGCAAAATAAAATACTAT+GGG + chr6_3:1512330-1512349 Msa0933020:intron 15.0%
!! AATAAAAATAATTGTCTTAG+AGG - chr6_3:1512627-1512646 None:intergenic 15.0%
!!! TATTTGAGTATTTATTTTCT+AGG + chr6_3:1512993-1513012 Msa0933020:intron 15.0%
!! TTTGGTATAAAAAAAAAACA+TGG - chr6_3:1513028-1513047 None:intergenic 15.0%
!! CAATAAACTAAACAAATAAA+TGG - chr6_3:1514148-1514167 None:intergenic 15.0%
!!! ATGCAAACTAAATATTTTTT+TGG + chr6_3:1514480-1514499 Msa0933020:intron 15.0%
!!! TGCAAACTAAATATTTTTTT+GGG + chr6_3:1514481-1514500 Msa0933020:intron 15.0%
!!! TTCAAACAAAATTTTTTACA+GGG - chr6_3:1515972-1515991 None:intergenic 15.0%
!!! ATTCAAACAAAATTTTTTAC+AGG - chr6_3:1515971-1515990 None:intergenic 15.0%
!!! GGAAAAAATTTTTTTTACAA+GGG - chr6_3:1514583-1514602 None:intergenic 15.0%
!!! CTTGTAAAAAAAATTTTTTC+CGG + chr6_3:1514582-1514601 Msa0933020:intron 15.0%
!!! TTTTCGATTTTTTACATTTT+TGG - chr6_3:1514869-1514888 None:intergenic 15.0%
!!! CCACAATTTTAATAAAATAT+TGG - chr6_3:1515397-1515416 None:intergenic 15.0%
!!! CCAATATTTTATTAAAATTG+TGG + chr6_3:1515394-1515413 Msa0933020:intron 15.0%
!!! TTTTCTGCTTTTTTATATTT+CGG + chr6_3:1515528-1515547 Msa0933020:intron 15.0%
!! TTTATAAAAAAAATATGACG+TGG + chr6_3:1515820-1515839 Msa0933020:intron 15.0%
!!! ATTCAAACAAAATTTTTTAC+AGG + chr6_3:1515971-1515990 Msa0933020:intron 15.0%
!!! TTCAAACAAAATTTTTTACA+GGG + chr6_3:1515972-1515991 Msa0933020:intron 15.0%
!! TTAGCATTCTTAAAAAAAAT+AGG - chr6_3:1516803-1516822 None:intergenic 15.0%
!!! TCCATTTTTTATATTTATTC+AGG + chr6_3:1517004-1517023 Msa0933020:intron 15.0%
!! TCCTGAATAAATATAAAAAA+TGG - chr6_3:1517008-1517027 None:intergenic 15.0%
!! AAAATAATCAATCAAATTGA+AGG - chr6_3:1517592-1517611 None:intergenic 15.0%
!!! TTCATTTTCATTATATATAG+TGG + chr6_3:1517692-1517711 Msa0933020:intron 15.0%
!! AGAAAATAACATATAATTAG+AGG + chr6_3:1517715-1517734 Msa0933020:intron 15.0%
!! AAACAAAAATAAAATTATGC+TGG - chr6_3:1517853-1517872 None:intergenic 15.0%
!!! TTTGTGTATTTCAATAATTT+TGG + chr6_3:1518093-1518112 Msa0933020:intron 15.0%
!!! TTGTGTATTTCAATAATTTT+GGG + chr6_3:1518094-1518113 Msa0933020:intron 15.0%
!! CAAATTAAAAAAATTACGAA+AGG - chr6_3:1518124-1518143 None:intergenic 15.0%
!! AACAAAAACTTATATGTATA+TGG - chr6_3:1518925-1518944 None:intergenic 15.0%
!!! GATACTTCATCAATTTTTTT+AGG + chr6_3:1512368-1512387 Msa0933020:intron 20.0%
!! TTTAAAAAACAAATCGAGAA+AGG + chr6_3:1512529-1512548 Msa0933020:intron 20.0%
!! TTAGAGGATTATATATTTGT+TGG + chr6_3:1512717-1512736 Msa0933020:intron 20.0%
!! ATCAAATACTATATGTCTTT+AGG + chr6_3:1512749-1512768 Msa0933020:intron 20.0%
!! TCAAATACTATATGTCTTTA+GGG + chr6_3:1512750-1512769 Msa0933020:intron 20.0%
!!! TCTTTTATATTACCTTGTAA+AGG + chr6_3:1512840-1512859 Msa0933020:intron 20.0%
!!! CTTTTATATTACCTTGTAAA+GGG + chr6_3:1512841-1512860 Msa0933020:intron 20.0%
!! TTATAAATATACCCTTTACA+AGG - chr6_3:1512855-1512874 None:intergenic 20.0%
!! TATATTGTGTTCATAGAAAA+TGG + chr6_3:1513077-1513096 Msa0933020:intron 20.0%
!! ATATTGTGTTCATAGAAAAT+GGG + chr6_3:1513078-1513097 Msa0933020:intron 20.0%
!! AAAATATTCTTGAACATCAT+AGG - chr6_3:1513361-1513380 None:intergenic 20.0%
!!! TGATGTTCAAGAATATTTTA+AGG + chr6_3:1513362-1513381 Msa0933020:CDS 20.0%
!! TTATCACAAATATTCATCAA+TGG - chr6_3:1513675-1513694 None:intergenic 20.0%
!! CTTATACTAAAAAACTAGTA+TGG - chr6_3:1514087-1514106 None:intergenic 20.0%
!!! TTTGTTTAGTTTATTGAACT+AGG + chr6_3:1514152-1514171 Msa0933020:intron 20.0%
!!! TTGTTTAGTTTATTGAACTA+GGG + chr6_3:1514153-1514172 Msa0933020:intron 20.0%
!!! TTTTTTTTCTTGGTTTTAAG+TGG + chr6_3:1514182-1514201 Msa0933020:intron 20.0%
!! TATAGATGAAAGATTAATAC+AGG + chr6_3:1514393-1514412 Msa0933020:intron 20.0%
!!! TCAAACAAAATTTTTTACAG+GGG - chr6_3:1515973-1515992 None:intergenic 20.0%
!!! CGGAAAAAATTTTTTTTACA+AGG - chr6_3:1514584-1514603 None:intergenic 20.0%
!! AAATCTGAATACAAATTTAG+AGG + chr6_3:1515154-1515173 Msa0933020:intron 20.0%
!! TATTCTCAAATAATATCAGA+GGG - chr6_3:1515292-1515311 None:intergenic 20.0%
!! TTATTCTCAAATAATATCAG+AGG - chr6_3:1515293-1515312 None:intergenic 20.0%
!!! CCTTGTAAAAATTTTTTTTC+CGG - chr6_3:1515946-1515965 None:intergenic 20.0%
!!! CGGAAAAAAAATTTTTACAA+GGG + chr6_3:1515944-1515963 Msa0933020:intron 20.0%
!!! TCAAACAAAATTTTTTACAG+GGG + chr6_3:1515973-1515992 Msa0933020:intron 20.0%
!!! TTGCATAGTGTTTATTTTTA+TGG - chr6_3:1516190-1516209 None:intergenic 20.0%
!! AAAAAAAAGGAAAAAACATG+TGG + chr6_3:1516348-1516367 Msa0933020:intron 20.0%
!!! GTATATGAGTTTAATTTTAG+TGG + chr6_3:1516453-1516472 Msa0933020:intron 20.0%
!! ACAAAGATAATCTTAATCTT+TGG - chr6_3:1516498-1516517 None:intergenic 20.0%
!!! GACTCTTAATATTTCTATTA+CGG - chr6_3:1516986-1517005 None:intergenic 20.0%
!!! TTTAAGAGATTATTTTTTCG+TGG - chr6_3:1517284-1517303 None:intergenic 20.0%
!! TACTTTACATATCTAAACTT+TGG - chr6_3:1517369-1517388 None:intergenic 20.0%
!! AAGTTTAGATATGTAAAGTA+TGG + chr6_3:1517369-1517388 Msa0933020:intron 20.0%
!!! AGTATTCGATTCTTTTTTAA+TGG - chr6_3:1517503-1517522 None:intergenic 20.0%
!! CTAAAAGAAATGAAAATGAA+TGG - chr6_3:1517632-1517651 None:intergenic 20.0%
!! GTAAAATTTCTTTCATAGTT+AGG + chr6_3:1517946-1517965 Msa0933020:intron 20.0%
!!! TATTTTTTCAGTATTTGCAT+TGG - chr6_3:1518270-1518289 None:intergenic 20.0%
!! ACATAATTCAATGTAATTAC+AGG - chr6_3:1518293-1518312 None:intergenic 20.0%
!! TTGTAATAAAAAGTAGCTAT+AGG + chr6_3:1519278-1519297 Msa0933020:intron 20.0%
!! TGAATGTTCACAAAATAAAA+TGG - chr6_3:1519395-1519414 None:intergenic 20.0%
!! AAAATATTCTTGAACATCAT+AGG - chr6_3:1513361-1513380 None:intergenic 20.0%
!!! TTCAAGAATATTTTAACGAA+AGG + chr6_3:1519903-1519922 Msa0933020:CDS 20.0%
!! TTATCACTAATATTCATCAA+TGG - chr6_3:1520235-1520254 None:intergenic 20.0%
!! AGATGAAAATGATAAAAACT+TGG + chr6_3:1520501-1520520 Msa0933020:CDS 20.0%
! GATCTAAATTGTAGAATTAG+TGG + chr6_3:1511651-1511670 Msa0933020:intron 25.0%
! TGGATTAAATATTAGATTCG+AGG + chr6_3:1511987-1512006 Msa0933020:intron 25.0%
!!! AACCTCTTCTTTAATTTGTT+TGG + chr6_3:1512049-1512068 Msa0933020:intron 25.0%
!! TTGATGTATCTCGATAATTT+TGG + chr6_3:1512113-1512132 Msa0933020:intron 25.0%
!! TGATGTATCTCGATAATTTT+GGG + chr6_3:1512114-1512133 Msa0933020:intron 25.0%
! TAGTTTAGATCGTTGTAATT+TGG - chr6_3:1512587-1512606 None:intergenic 25.0%
! ATACTGTGGTATAGTATATT+TGG - chr6_3:1513046-1513065 None:intergenic 25.0%
! ATAATCAAGTATTCATACTG+TGG - chr6_3:1513060-1513079 None:intergenic 25.0%
! TGGTTTAATAAAGAAAGCAA+AGG + chr6_3:1513173-1513192 Msa0933020:CDS 25.0%
!!! TTCAAGAATATTTTAAGGAG+AGG + chr6_3:1513367-1513386 Msa0933020:CDS 25.0%
!! GATGAATCTTACAATTCTTT+TGG + chr6_3:1513459-1513478 Msa0933020:CDS 25.0%
! ATTTGTGATAAAAATCCCAT+AGG + chr6_3:1513684-1513703 Msa0933020:CDS 25.0%
! TTTGTGATAAAAATCCCATA+GGG + chr6_3:1513685-1513704 Msa0933020:CDS 25.0%
!!! TTCTTCTTCATATCGATTTT+GGG - chr6_3:1513843-1513862 None:intergenic 25.0%
! TTTCCATTGTAATAGTATGA+TGG - chr6_3:1513894-1513913 None:intergenic 25.0%
! TCCATAAAGTAGATATTCAT+GGG - chr6_3:1513985-1514004 None:intergenic 25.0%
! ATCCATAAAGTAGATATTCA+TGG - chr6_3:1513986-1514005 None:intergenic 25.0%
! TTGAATACTATCCATATCAT+AGG - chr6_3:1514009-1514028 None:intergenic 25.0%
! TCTATATTAGTACATGCATA+TGG - chr6_3:1514379-1514398 None:intergenic 25.0%
!!! AAACAAAATTTTTTACAGGG+GGG - chr6_3:1515975-1515994 None:intergenic 25.0%
!!! CAAACAAAATTTTTTACAGG+GGG - chr6_3:1515974-1515993 None:intergenic 25.0%
! GAGCTTAATTATAGGAAAAA+TGG - chr6_3:1515203-1515222 None:intergenic 25.0%
! CTAATGAAGAGCTTAATTAT+AGG - chr6_3:1515211-1515230 None:intergenic 25.0%
! ATAATTAAGCTCTTCATTAG+AGG + chr6_3:1515211-1515230 Msa0933020:intron 25.0%
!! TTCTAACAAAAATCCGTTTT+GGG - chr6_3:1515332-1515351 None:intergenic 25.0%
!! ATTCTAACAAAAATCCGTTT+TGG - chr6_3:1515333-1515352 None:intergenic 25.0%
!! GGATTTTTGTTAGAATCATT+AGG + chr6_3:1515337-1515356 Msa0933020:intron 25.0%
! CATTAGGCAAAAAAAATTTG+TGG + chr6_3:1515353-1515372 Msa0933020:intron 25.0%
!! CCGGAAAAAAAATTTTTACA+AGG + chr6_3:1515943-1515962 Msa0933020:intron 25.0%
!!! CAAACAAAATTTTTTACAGG+GGG + chr6_3:1515974-1515993 Msa0933020:intron 25.0%
! TTTATGGAATTGCTAAGTAT+TGG - chr6_3:1516174-1516193 None:intergenic 25.0%
!! GATTATCTTTGTTTATGTCA+CGG + chr6_3:1516506-1516525 Msa0933020:intron 25.0%
! TCACAACATATTTCTCTATT+TGG + chr6_3:1516668-1516687 Msa0933020:intron 25.0%
! CACAACATATTTCTCTATTT+GGG + chr6_3:1516669-1516688 Msa0933020:intron 25.0%
! TTCTTAAAGAAATGAACATC+TGG + chr6_3:1516745-1516764 Msa0933020:intron 25.0%
!!! AGTTTTAACCTTTTGAAAGT+CGG - chr6_3:1516836-1516855 None:intergenic 25.0%
! ACTTTCAAAAGGTTAAAACT+TGG + chr6_3:1516836-1516855 Msa0933020:intron 25.0%
! AGACTTTGTCAAAAAGTTTA+AGG - chr6_3:1516902-1516921 None:intergenic 25.0%
!!! TTTTAGAAGTTTTCTTTCGT+TGG + chr6_3:1517063-1517082 Msa0933020:intron 25.0%
!!! TTTTTTTGTTGTTAACACTC+CGG + chr6_3:1517317-1517336 Msa0933020:intron 25.0%
! ATCTAAACTTTGGATTATCA+CGG - chr6_3:1517359-1517378 None:intergenic 25.0%
!!! ATCGATTTTTATGGTAACAA+TGG - chr6_3:1517475-1517494 None:intergenic 25.0%
!!! ATGGATTCAATCGATTTTTA+TGG - chr6_3:1517484-1517503 None:intergenic 25.0%
! ATAATCAATCAAATTGAAGG+TGG - chr6_3:1517589-1517608 None:intergenic 25.0%
! TGAAAATGAATCTCTCAAAA+AGG - chr6_3:1517682-1517701 None:intergenic 25.0%
!! GTTTTGTAAAATCATCAAGA+TGG + chr6_3:1517924-1517943 Msa0933020:intron 25.0%
! CATAGTTAGGATTAAATACT+AGG + chr6_3:1517959-1517978 Msa0933020:intron 25.0%
! CACAAACACTTCTTAAATTA+GGG + chr6_3:1518222-1518241 Msa0933020:intron 25.0%
!! AATTTGCTTATAATAGTGAC+CGG - chr6_3:1518552-1518571 None:intergenic 25.0%
!! AATTTGCTTATAATAGTGAC+CGG + chr6_3:1518552-1518571 Msa0933020:intron 25.0%
!!! AACTTGTAGTTCTAGAAAAT+TGG + chr6_3:1519023-1519042 Msa0933020:intron 25.0%
! ACAGTCTAATATTATGAGTT+GGG - chr6_3:1519195-1519214 None:intergenic 25.0%
! TACAGTCTAATATTATGAGT+TGG - chr6_3:1519196-1519215 None:intergenic 25.0%
! ATACCAAATATATCATACCA+TGG + chr6_3:1519576-1519595 Msa0933020:intron 25.0%
! ATACCATGGTATGATATATT+TGG - chr6_3:1519582-1519601 None:intergenic 25.0%
! ACTATAACACAACAATTGAT+AGG + chr6_3:1519861-1519880 Msa0933020:CDS 25.0%
! ATTAGTGATAAAAACCCTTT+AGG + chr6_3:1520244-1520263 Msa0933020:CDS 25.0%
! TTAGTGATAAAAACCCTTTA+GGG + chr6_3:1520245-1520264 Msa0933020:CDS 25.0%
! GTATTTCCATTGTAATAGTA+TGG - chr6_3:1520529-1520548 None:intergenic 25.0%
!!! AGGTTTGAAAGATTTTGAAA+AGG - chr6_3:1520592-1520611 None:intergenic 25.0%
TCAAGATAAAATCATCGAGA+TGG + chr6_3:1511944-1511963 Msa0933020:intron 30.0%
CTCCAAACAAATTAAAGAAG+AGG - chr6_3:1512054-1512073 None:intergenic 30.0%
! GATGTATCTCGATAATTTTG+GGG + chr6_3:1512115-1512134 Msa0933020:intron 30.0%
!!! CTTTGATTGTGCGTTTTTTA+TGG + chr6_3:1512283-1512302 Msa0933020:intron 30.0%
! TTGTCATTTGAACAACTTAG+AGG + chr6_3:1512701-1512720 Msa0933020:intron 30.0%
ATCTATGGAACTCATTCAAA+AGG + chr6_3:1513113-1513132 Msa0933020:CDS 30.0%
GATAACATTGCAAAAGAGAA+AGG + chr6_3:1513149-1513168 Msa0933020:CDS 30.0%
AACATCAACATCACAAAGAA+TGG - chr6_3:1513205-1513224 None:intergenic 30.0%
ACTATGACACAACAATTGAT+AGG + chr6_3:1513325-1513344 Msa0933020:CDS 30.0%
TAAAGATGATGTATCCAACT+TGG + chr6_3:1513436-1513455 Msa0933020:CDS 30.0%
AAAGATGATGTATCCAACTT+GGG + chr6_3:1513437-1513456 Msa0933020:CDS 30.0%
AACAATTGAGGTCATTTGTT+AGG + chr6_3:1513487-1513506 Msa0933020:intron 30.0%
TCAAGTAAGGAGAACTAATA+AGG - chr6_3:1513587-1513606 None:intergenic 30.0%
! ATAAAAATCCCATAGGGTTT+TGG + chr6_3:1513691-1513710 Msa0933020:CDS 30.0%
AACATTAGCATTAACCTGAT+GGG - chr6_3:1513811-1513830 None:intergenic 30.0%
TAACATTAGCATTAACCTGA+TGG - chr6_3:1513812-1513831 None:intergenic 30.0%
!!! CTTCTTCTTCATATCGATTT+TGG - chr6_3:1513844-1513863 None:intergenic 30.0%
CAAAATCGATATGAAGAAGA+AGG + chr6_3:1513842-1513861 Msa0933020:CDS 30.0%
TTGCCATCATACTATTACAA+TGG + chr6_3:1513888-1513907 Msa0933020:CDS 30.0%
AAAGTAGATATTCATGGGAT+AGG - chr6_3:1513980-1513999 None:intergenic 30.0%
TCCCATGAATATCTACTTTA+TGG + chr6_3:1513981-1514000 Msa0933020:CDS 30.0%
ACTTTATGGATCCTATGATA+TGG + chr6_3:1513995-1514014 Msa0933020:CDS 30.0%
TTTAAGTGGAACAAATAGCT+TGG + chr6_3:1514196-1514215 Msa0933020:intron 30.0%
! AGAGGTTTTTATAAAAGTCG+TGG + chr6_3:1515172-1515191 Msa0933020:intron 30.0%
TTCTTATTATAGCCCCAAAA+CGG + chr6_3:1515316-1515335 Msa0933020:intron 30.0%
! TCTAACAAAAATCCGTTTTG+GGG - chr6_3:1515331-1515350 None:intergenic 30.0%
! ACTTTAGCAGTAAGCATTTT+TGG - chr6_3:1516214-1516233 None:intergenic 30.0%
TAAACTCATATACAACTGTG+AGG - chr6_3:1516446-1516465 None:intergenic 30.0%
TATGTCACGGAACAAATATT+CGG + chr6_3:1516519-1516538 Msa0933020:intron 30.0%
!! GTTTTAACCTTTTGAAAGTC+GGG - chr6_3:1516835-1516854 None:intergenic 30.0%
GACAATGCATAAAATATGCA+AGG + chr6_3:1517236-1517255 Msa0933020:intron 30.0%
!!! AAGAGATTATTTTTTCGTGG+TGG - chr6_3:1517281-1517300 None:intergenic 30.0%
TGAAAATGAATGGCCAAAAA+AGG - chr6_3:1517622-1517641 None:intergenic 30.0%
GAAGAAGAAGAAGAAAAACA+AGG + chr6_3:1517800-1517819 Msa0933020:intron 30.0%
AGGATTAAATACTAGGTTCA+AGG + chr6_3:1517966-1517985 Msa0933020:intron 30.0%
GAGATTATGCATTTCATTGA+TGG - chr6_3:1518007-1518026 None:intergenic 30.0%
! TTGCAAAAATAGCTTTTGAG+AGG + chr6_3:1518144-1518163 Msa0933020:intron 30.0%
!! TAAGAAGTGTTTGTGCTTTA+TGG - chr6_3:1518217-1518236 None:intergenic 30.0%
GCACAAACACTTCTTAAATT+AGG + chr6_3:1518221-1518240 Msa0933020:intron 30.0%
CATTCAATCAATGATGTATG+TGG + chr6_3:1518478-1518497 Msa0933020:intron 30.0%
! TAAAAGCTCGACTTCTTTTT+CGG - chr6_3:1518899-1518918 None:intergenic 30.0%
! TCTTTTTGTCAGCATCATAA+TGG + chr6_3:1518946-1518965 Msa0933020:intron 30.0%
TGGATTTGAACAAGTAGTAA+GGG - chr6_3:1519128-1519147 None:intergenic 30.0%
ATGGATTTGAACAAGTAGTA+AGG - chr6_3:1519129-1519148 None:intergenic 30.0%
TCTCTGCATCTAACAAATAA+TGG - chr6_3:1519148-1519167 None:intergenic 30.0%
TTGGGACACTAAAGATATAT+AGG - chr6_3:1519177-1519196 None:intergenic 30.0%
ATAATCATGTGTTCATACCA+TGG - chr6_3:1519596-1519615 None:intergenic 30.0%
GTATTGCAAAAGAGAAAGAT+TGG + chr6_3:1519689-1519708 Msa0933020:CDS 30.0%
TGGTTTGATGAAAAAAGTTG+AGG + chr6_3:1519709-1519728 Msa0933020:CDS 30.0%
! TCAAGATGAAGTATCAAACT+TGG + chr6_3:1519972-1519991 Msa0933020:CDS 30.0%
! CAAGATGAAGTATCAAACTT+GGG + chr6_3:1519973-1519992 Msa0933020:CDS 30.0%
GATGAATCTTTCAATTCTCT+TGG + chr6_3:1519995-1520014 Msa0933020:CDS 30.0%
AACAATTGAGGTTATTTGCT+AGG + chr6_3:1520023-1520042 Msa0933020:CDS 30.0%
CTAAAGATGAATATGCTAGA+AGG + chr6_3:1520076-1520095 Msa0933020:CDS 30.0%
TCACTAATATTCATCAATGG+AGG - chr6_3:1520232-1520251 None:intergenic 30.0%
!!! ATAAAAACCCTTTAGGGTTT+TGG + chr6_3:1520251-1520270 Msa0933020:CDS 30.0%
TAAAATCAATCTGCTTGCAA+GGG - chr6_3:1520414-1520433 None:intergenic 30.0%
TTAAAATCAATCTGCTTGCA+AGG - chr6_3:1520415-1520434 None:intergenic 30.0%
!! GCAAGCAGATTGATTTTAAT+TGG + chr6_3:1520416-1520435 Msa0933020:CDS 30.0%
AACATTAGCATCAACATGAT+GGG - chr6_3:1520443-1520462 None:intergenic 30.0%
TAACATTAGCATCAACATGA+TGG - chr6_3:1520444-1520463 None:intergenic 30.0%
!!! CATACTGATTTTGAGATCAT+TGG - chr6_3:1520467-1520486 None:intergenic 30.0%
CAAAATCAGTATGAAGAAGA+AGG + chr6_3:1520474-1520493 Msa0933020:CDS 30.0%
!! AGATTTTGAAAAGGAAGAGT+AGG - chr6_3:1520583-1520602 None:intergenic 30.0%
! ATAATTGTCTTAGAGGTGTG+TGG - chr6_3:1512620-1512639 None:intergenic 35.0%
! TTCTCAAAAGTGCATTCTCA+TGG - chr6_3:1512788-1512807 None:intergenic 35.0%
TGTAACTTATCATGCATGCA+AGG - chr6_3:1512933-1512952 None:intergenic 35.0%
ACATTGCAAAAGAGAAAGGA+TGG + chr6_3:1513153-1513172 Msa0933020:CDS 35.0%
!! TTTCAGGTTCAACATATCCT+TGG - chr6_3:1513260-1513279 None:intergenic 35.0%
GATATGTTGAACCTGAAACA+TGG + chr6_3:1513262-1513281 Msa0933020:intron 35.0%
TCTTGAACATCATAGGTCTT+AGG - chr6_3:1513354-1513373 None:intergenic 35.0%
TTTACAATGTGCGTAAAGAG+AGG + chr6_3:1513412-1513431 Msa0933020:CDS 35.0%
TTGTAAGATTCATCCCAAGT+TGG - chr6_3:1513453-1513472 None:intergenic 35.0%
! CTTTTGGATACGAACAATTG+AGG + chr6_3:1513475-1513494 Msa0933020:CDS 35.0%
!! GAGGTCATTTGTTAGGTTTT+TGG + chr6_3:1513494-1513513 Msa0933020:intron 35.0%
! AATTTTCCCTTGAGACATGT+TGG - chr6_3:1513646-1513665 None:intergenic 35.0%
TTGTGAACTGGAAACCATAA+GGG - chr6_3:1513748-1513767 None:intergenic 35.0%
TTTGTGAACTGGAAACCATA+AGG - chr6_3:1513749-1513768 None:intergenic 35.0%
AATATGCTTGCAAGGGTAAT+AGG - chr6_3:1513775-1513794 None:intergenic 35.0%
TAGCATCAATATGCTTGCAA+GGG - chr6_3:1513782-1513801 None:intergenic 35.0%
TTAGCATCAATATGCTTGCA+AGG - chr6_3:1513783-1513802 None:intergenic 35.0%
! TTTGCAAGATTCTGAAAAGG+AGG - chr6_3:1513957-1513976 None:intergenic 35.0%
! AGGTTTGCAAGATTCTGAAA+AGG - chr6_3:1513960-1513979 None:intergenic 35.0%
ATGGATGTCTAATGCATTAC+AGG - chr6_3:1514068-1514087 None:intergenic 35.0%
!!! AGGGTGACGATTTTTTTTCT+TGG + chr6_3:1514172-1514191 Msa0933020:intron 35.0%
AGTACATGCATATGGCAAAA+GGG - chr6_3:1514371-1514390 None:intergenic 35.0%
TAGTACATGCATATGGCAAA+AGG - chr6_3:1514372-1514391 None:intergenic 35.0%
ATCCAGACTTTAGATACATG+TGG + chr6_3:1514433-1514452 Msa0933020:intron 35.0%
ATTAAGCTCTTCATTAGAGG+AGG + chr6_3:1515214-1515233 Msa0933020:intron 35.0%
GTAAGAAACACAAAAACTCG+CGG + chr6_3:1516086-1516105 Msa0933020:intron 35.0%
TAACTAGACACAATGCCATA+TGG + chr6_3:1516635-1516654 Msa0933020:intron 35.0%
TGTGATGATACTGAACCATA+TGG - chr6_3:1516653-1516672 None:intergenic 35.0%
TGGGTTATTAACTAGTACCA+TGG + chr6_3:1516688-1516707 Msa0933020:intron 35.0%
CTAACAAATGACATACACCA+TGG - chr6_3:1516708-1516727 None:intergenic 35.0%
AGTTATACCCGACTTTCAAA+AGG + chr6_3:1516825-1516844 Msa0933020:intron 35.0%
! AACCTATTTTCACCCCTAAT+TGG + chr6_3:1516952-1516971 Msa0933020:intron 35.0%
TTCCAATTAGGGGTGAAAAT+AGG - chr6_3:1516957-1516976 None:intergenic 35.0%
! TACGGCTTTGATTCCAATTA+GGG - chr6_3:1516968-1516987 None:intergenic 35.0%
! TTACGGCTTTGATTCCAATT+AGG - chr6_3:1516969-1516988 None:intergenic 35.0%
TGCATAAAATATGCAAGGTC+TGG + chr6_3:1517241-1517260 Msa0933020:intron 35.0%
GCATAAAATATGCAAGGTCT+GGG + chr6_3:1517242-1517261 Msa0933020:intron 35.0%
CATAAAATATGCAAGGTCTG+GGG + chr6_3:1517243-1517262 Msa0933020:intron 35.0%
!! TTGAGTGTTGATACTATCTG+AGG + chr6_3:1518035-1518054 Msa0933020:intron 35.0%
CTGCTTAGACAATAGAAAGA+TGG - chr6_3:1518194-1518213 None:intergenic 35.0%
! CTTCTTAAATTAGGGTGTCT+CGG + chr6_3:1518230-1518249 Msa0933020:intron 35.0%
ATGGATATAGACACGAACAT+CGG - chr6_3:1518372-1518391 None:intergenic 35.0%
TGTCTATATCCATGCTTCAT+AGG + chr6_3:1518379-1518398 Msa0933020:intron 35.0%
TAACTCATATATACTCCCTC+CGG + chr6_3:1518421-1518440 Msa0933020:intron 35.0%
! CGAAGTTTTTCATATGCAAG+AGG + chr6_3:1519061-1519080 Msa0933020:intron 35.0%
AACTCCTAACCACTTGTTTA+AGG + chr6_3:1519093-1519112 Msa0933020:intron 35.0%
ACTCCTAACCACTTGTTTAA+GGG + chr6_3:1519094-1519113 Msa0933020:intron 35.0%
TAGAGTTGTCAAGTTCTCAA+AGG - chr6_3:1519219-1519238 None:intergenic 35.0%
TATATTGTGTTCGCAGCAAA+TGG + chr6_3:1519613-1519632 Msa0933020:intron 35.0%
ATATTGTGTTCGCAGCAAAT+GGG + chr6_3:1519614-1519633 Msa0933020:intron 35.0%
ATCTGTGGAATTCATTCCAA+AGG + chr6_3:1519649-1519668 Msa0933020:CDS 35.0%
TCATTCCAAAGGAGAAATCT+AGG + chr6_3:1519660-1519679 Msa0933020:CDS 35.0%
ATCTTCCTAGATTTCTCCTT+TGG - chr6_3:1519668-1519687 None:intergenic 35.0%
AGCATCAACATCACAAAGAA+TGG - chr6_3:1519741-1519760 None:intergenic 35.0%
AGGTGCAAAGAATTCTTCAA+AGG + chr6_3:1513301-1513320 Msa0933020:intron 35.0%
CTTGGATTTGAGTCTAAGTA+GGG - chr6_3:1520163-1520182 None:intergenic 35.0%
ACTTGGATTTGAGTCTAAGT+AGG - chr6_3:1520164-1520183 None:intergenic 35.0%
TTGGCACCATACTATTACAA+TGG + chr6_3:1520520-1520539 Msa0933020:CDS 35.0%
GCTGTGAGCATAACTCAATT+AGG + chr6_3:1511836-1511855 Msa0933020:intron 40.0%
CTTCTTCTGATCTCCATTAG+TGG + chr6_3:1512019-1512038 Msa0933020:intron 40.0%
! TTGTTTGGAGCCTCTAGTTT+AGG + chr6_3:1512064-1512083 Msa0933020:intron 40.0%
! TGTTTGGAGCCTCTAGTTTA+GGG + chr6_3:1512065-1512084 Msa0933020:intron 40.0%
TCACATGAAGTAGCATCTAG+AGG - chr6_3:1512459-1512478 None:intergenic 40.0%
GCATTCTCATGGTATGAGTT+GGG - chr6_3:1512777-1512796 None:intergenic 40.0%
TGCATTCTCATGGTATGAGT+TGG - chr6_3:1512778-1512797 None:intergenic 40.0%
TGTTCATAGAAAATGGGTCG+TGG + chr6_3:1513084-1513103 Msa0933020:intron 40.0%
TTGTCTTTAGGCCATGTTTC+AGG - chr6_3:1513276-1513295 None:intergenic 40.0%
ATGGCCTAAAGACAAAAGAG+AGG + chr6_3:1513281-1513300 Msa0933020:intron 40.0%
! TGCACCTCTCTTTTGTCTTT+AGG - chr6_3:1513288-1513307 None:intergenic 40.0%
! CCTGAATTTGAGGTCAAGTA+AGG - chr6_3:1513600-1513619 None:intergenic 40.0%
CCTTACTTGACCTCAAATTC+AGG + chr6_3:1513597-1513616 Msa0933020:CDS 40.0%
!! GAAGTTGGTACCTGAATTTG+AGG - chr6_3:1513610-1513629 None:intergenic 40.0%
GGTATGCATGAGATTGAAGT+TGG - chr6_3:1513625-1513644 None:intergenic 40.0%
ATGCATACCAACATGTCTCA+AGG + chr6_3:1513636-1513655 Msa0933020:CDS 40.0%
TGCATACCAACATGTCTCAA+GGG + chr6_3:1513637-1513656 Msa0933020:CDS 40.0%
TGAATTGGCCAAAACCCTAT+GGG - chr6_3:1513702-1513721 None:intergenic 40.0%
TTGAATTGGCCAAAACCCTA+TGG - chr6_3:1513703-1513722 None:intergenic 40.0%
!! AGGGTTTTGGCCAATTCAAT+TGG + chr6_3:1513704-1513723 Msa0933020:CDS 40.0%
! GAGCTTTGTGCCAATTGAAT+TGG - chr6_3:1513717-1513736 None:intergenic 40.0%
! GTAATAGGAGCTTTGTGAAC+TGG - chr6_3:1513760-1513779 None:intergenic 40.0%
GCAAGCATATTGATGCTAAC+TGG + chr6_3:1513784-1513803 Msa0933020:intron 40.0%
! AGATTCTGAAAAGGAGGAGT+AGG - chr6_3:1513951-1513970 None:intergenic 40.0%
CAACTGTTCAACTCCATGAA+TGG + chr6_3:1514032-1514051 Msa0933020:CDS 40.0%
GTACATGCATATGGCAAAAG+GGG - chr6_3:1514370-1514389 None:intergenic 40.0%
! CTCCACATGTATCTAAAGTC+TGG - chr6_3:1514438-1514457 None:intergenic 40.0%
TGTTTACCCCCCTGTAATTT+GGG + chr6_3:1514512-1514531 Msa0933020:intron 40.0%
TGTTTACCCCCCTGTAATTT+GGG - chr6_3:1514512-1514531 None:intergenic 40.0%
!! GGAATTGCTAAGTATTGGCT+TGG - chr6_3:1516169-1516188 None:intergenic 40.0%
! ACGGCTTTGATTCCAATTAG+GGG - chr6_3:1516967-1516986 None:intergenic 40.0%
! TGAGCTTAGTTCAGTTGGTA+TGG + chr6_3:1517214-1517233 Msa0933020:intron 40.0%
!!! TTATTTTTTCGTGGTGGCCA+GGG - chr6_3:1517275-1517294 None:intergenic 40.0%
!!! ATTATTTTTTCGTGGTGGCC+AGG - chr6_3:1517276-1517295 None:intergenic 40.0%
! TATCTGAGGCTTCGATTTAG+AGG + chr6_3:1518049-1518068 Msa0933020:intron 40.0%
TATTAACTGTGTCTGCGTGT+CGG + chr6_3:1518326-1518345 Msa0933020:intron 40.0%
TGCTTATAATAGTGACCGGA+GGG - chr6_3:1518556-1518575 None:intergenic 40.0%
TTGCTTATAATAGTGACCGG+AGG - chr6_3:1518555-1518574 None:intergenic 40.0%
TTGCTTATAATAGTGACCGG+AGG + chr6_3:1518555-1518574 Msa0933020:intron 40.0%
TGCTTATAATAGTGACCGGA+GGG + chr6_3:1518556-1518575 Msa0933020:intron 40.0%
CTCCTAACCACTTGTTTAAG+GGG + chr6_3:1519095-1519114 Msa0933020:intron 40.0%
AACCCCTTAAACAAGTGGTT+AGG - chr6_3:1519100-1519119 None:intergenic 40.0%
AGTTCAACCCCTTAAACAAG+TGG - chr6_3:1519105-1519124 None:intergenic 40.0%
AGAGCAGCAAGACAAATGAA+AGG - chr6_3:1519439-1519458 None:intergenic 40.0%
! TGCACCTCTTTTGTGTCTTT+CGG - chr6_3:1519824-1519843 None:intergenic 40.0%
CTCTTGGACATGAACAATTG+AGG + chr6_3:1520011-1520030 Msa0933020:CDS 40.0%
! GAGGTTATTTGCTAGGATCT+TGG + chr6_3:1520030-1520049 Msa0933020:CDS 40.0%
TATGCTAGAAGGAGATCTTC+TGG + chr6_3:1520087-1520106 Msa0933020:CDS 40.0%
ATGCTAGAAGGAGATCTTCT+GGG + chr6_3:1520088-1520107 Msa0933020:CDS 40.0%
!!! TGTTGTTTTGCACGAGATTG+AGG - chr6_3:1520189-1520208 None:intergenic 40.0%
TAAGTGGCCAAAACCCTAAA+GGG - chr6_3:1520261-1520280 None:intergenic 40.0%
ATAAGTGGCCAAAACCCTAA+AGG - chr6_3:1520262-1520281 None:intergenic 40.0%
!! AGGGTTTTGGCCACTTATAT+CGG + chr6_3:1520264-1520283 Msa0933020:CDS 40.0%
GCAGTTGAAACCATATGAGA+GGG - chr6_3:1520304-1520323 None:intergenic 40.0%
TGCAGTTGAAACCATATGAG+AGG - chr6_3:1520305-1520324 None:intergenic 40.0%
CTTCTACCATGTAGAGTCTA+AGG + chr6_3:1520366-1520385 Msa0933020:CDS 40.0%
! GTTTGGAGCCTCTAGTTTAG+GGG + chr6_3:1512066-1512085 Msa0933020:intron 45.0%
CATATGCACCCCTAAACTAG+AGG - chr6_3:1512077-1512096 None:intergenic 45.0%
TTGGCTACAAGCAAGTGCTA+TGG + chr6_3:1512424-1512443 Msa0933020:intron 45.0%
TGGCTACAAGCAAGTGCTAT+GGG + chr6_3:1512425-1512444 Msa0933020:intron 45.0%
GGGTCGTGGAAGAATATCTA+TGG + chr6_3:1513098-1513117 Msa0933020:CDS 45.0%
! TATCCTTGGCCTTCAAGGTT+GGG - chr6_3:1513246-1513265 None:intergenic 45.0%
! ATATCCTTGGCCTTCAAGGT+TGG - chr6_3:1513247-1513266 None:intergenic 45.0%
! CAACATATCCTTGGCCTTCA+AGG - chr6_3:1513251-1513270 None:intergenic 45.0%
GCGAAAAGATGAATCGCACA+AGG + chr6_3:1513554-1513573 Msa0933020:CDS 45.0%
AAGCTCTCAACCTTCCCTTA+TGG + chr6_3:1513731-1513750 Msa0933020:CDS 45.0%
GAACTGGAAACCATAAGGGA+AGG - chr6_3:1513744-1513763 None:intergenic 45.0%
AGGCTACTTCGTTCCATTCA+TGG - chr6_3:1514048-1514067 None:intergenic 45.0%
ATTAATACAGGCCGAACGTC+AGG + chr6_3:1514405-1514424 Msa0933020:intron 45.0%
TTAATACAGGCCGAACGTCA+GGG + chr6_3:1514406-1514425 Msa0933020:intron 45.0%
GTGTTTACCCCCCTGTAATT+TGG + chr6_3:1514511-1514530 Msa0933020:intron 45.0%
AAACTCGCCCAAATTACAGG+GGG - chr6_3:1516004-1516023 None:intergenic 45.0%
GAAACTCGCCCAAATTACAG+GGG - chr6_3:1516003-1516022 None:intergenic 45.0%
CGAAACTCGCCCAAATTACA+GGG - chr6_3:1516002-1516021 None:intergenic 45.0%
CCTGTAATTTGGGCGAGTTT+CGG + chr6_3:1514522-1514541 Msa0933020:intron 45.0%
CCTGTAATTTGGGCGAGTTT+CGG - chr6_3:1514522-1514541 None:intergenic 45.0%
CGAAACTCGCCCAAATTACA+GGG + chr6_3:1516002-1516021 Msa0933020:intron 45.0%
GAAACTCGCCCAAATTACAG+GGG + chr6_3:1516003-1516022 Msa0933020:intron 45.0%
AAACTCGCCCAAATTACAGG+GGG + chr6_3:1516004-1516023 Msa0933020:intron 45.0%
GTGTTTACCCCCCTGTAATT+TGG - chr6_3:1514511-1514530 None:intergenic 45.0%
GGGATTGAAAGTTGAGAGAG+AGG + chr6_3:1516277-1516296 Msa0933020:intron 45.0%
TTGAGAGAGAGGATGAGAAG+AGG + chr6_3:1516288-1516307 Msa0933020:intron 45.0%
TGAGAGAGAGGATGAGAAGA+GGG + chr6_3:1516289-1516308 Msa0933020:intron 45.0%
TCGTGATACGGATTCGAACT+CGG + chr6_3:1516418-1516437 Msa0933020:intron 45.0%
CATCGTGAGCTTAGTTCAGT+TGG + chr6_3:1517209-1517228 Msa0933020:intron 45.0%
GACTGCTTACCTATGAAGCA+TGG - chr6_3:1518391-1518410 None:intergenic 45.0%
CTCTATGCTCCCAACTTTGA+AGG + chr6_3:1519770-1519789 Msa0933020:CDS 45.0%
! TACCCTTGGCCTTCAAAGTT+GGG - chr6_3:1519782-1519801 None:intergenic 45.0%
! ATACCCTTGGCCTTCAAAGT+TGG - chr6_3:1519783-1519802 None:intergenic 45.0%
!! TTTCAGGTTCAGCATACCCT+TGG - chr6_3:1519796-1519815 None:intergenic 45.0%
GGTATGCTGAACCTGAAACA+TGG + chr6_3:1519798-1519817 Msa0933020:CDS 45.0%
ATGGCCGAAAGACACAAAAG+AGG + chr6_3:1519817-1519836 Msa0933020:CDS 45.0%
GAACTTCTCTTTGCGCACTT+TGG - chr6_3:1519954-1519973 None:intergenic 45.0%
!! GGGTTTTGGCCACTTATATC+GGG + chr6_3:1520265-1520284 Msa0933020:CDS 45.0%
! GAGCTTTGTCCCGATATAAG+TGG - chr6_3:1520277-1520296 None:intergenic 45.0%
AAGCTCTCAACCCTCTCATA+TGG + chr6_3:1520291-1520310 Msa0933020:CDS 45.0%
AAGCTCTCAACCTTCTCCTA+TGG + chr6_3:1520327-1520346 Msa0933020:CDS 45.0%
GACTCTACATGGTAGAAGCT+CGG - chr6_3:1520364-1520383 None:intergenic 45.0%
CTACCATGTAGAGTCTAAGG+CGG + chr6_3:1520369-1520388 Msa0933020:CDS 45.0%
! TACCATGTAGAGTCTAAGGC+GGG + chr6_3:1520370-1520389 Msa0933020:CDS 45.0%
GGAAGAGTAGGCATAGCAAT+GGG - chr6_3:1520571-1520590 None:intergenic 45.0%
AGGAAGAGTAGGCATAGCAA+TGG - chr6_3:1520572-1520591 None:intergenic 45.0%
GAGGTTGCACACTCCACTAA+TGG - chr6_3:1512035-1512054 None:intergenic 50.0%
! CTTCAAGGTTGGGAGCATAC+AGG - chr6_3:1513236-1513255 None:intergenic 50.0%
CTGTATGCTCCCAACCTTGA+AGG + chr6_3:1513234-1513253 Msa0933020:CDS 50.0%
TGATGCTAACTGGACCCATC+AGG + chr6_3:1513794-1513813 Msa0933020:intron 50.0%
GGAGGAGTAGGCATAGCAAT+AGG - chr6_3:1513939-1513958 None:intergenic 50.0%
TAATACAGGCCGAACGTCAG+GGG + chr6_3:1514407-1514426 Msa0933020:intron 50.0%
AACTCGCCCAAATTACAGGG+GGG - chr6_3:1516005-1516024 None:intergenic 50.0%
CCGAAACTCGCCCAAATTAC+AGG - chr6_3:1516001-1516020 None:intergenic 50.0%
! AGCGAATCTGCTGAGTTGGA+GGG - chr6_3:1515906-1515925 None:intergenic 50.0%
!! AGAGGGTTTTGTCATCGTCG+TGG - chr6_3:1515275-1515294 None:intergenic 50.0%
! AGCGAATCTGCTGAGTTGGA+GGG + chr6_3:1515906-1515925 Msa0933020:intron 50.0%
CCGAAACTCGCCCAAATTAC+AGG + chr6_3:1516001-1516020 Msa0933020:intron 50.0%
AACTCGCCCAAATTACAGGG+GGG + chr6_3:1516005-1516024 Msa0933020:intron 50.0%
! TGTGGAGCTTTAGCTCCACA+TGG + chr6_3:1516366-1516385 Msa0933020:intron 50.0%
CGTGATACGGATTCGAACTC+GGG + chr6_3:1516419-1516438 Msa0933020:intron 50.0%
ACACTCCGGTCTCAAGAGAA+AGG + chr6_3:1517331-1517350 Msa0933020:intron 50.0%
CACTCCGGTCTCAAGAGAAA+GGG + chr6_3:1517332-1517351 Msa0933020:intron 50.0%
ACACACACACATACTCCCTC+CGG - chr6_3:1518574-1518593 None:intergenic 50.0%
! CTCCCAACTTTGAAGGCCAA+GGG + chr6_3:1519777-1519796 Msa0933020:CDS 50.0%
GTGTCTTTCGGCCATGTTTC+AGG - chr6_3:1519812-1519831 None:intergenic 50.0%
TGCACGAGATTGAGGCTACT+TGG - chr6_3:1520181-1520200 None:intergenic 50.0%
TACCCGCCTTAGACTCTACA+TGG - chr6_3:1520375-1520394 None:intergenic 50.0%
! GAATCTGCTGAGTTGGAGGG+GGG - chr6_3:1515909-1515928 None:intergenic 55.0%
! CGAATCTGCTGAGTTGGAGG+GGG - chr6_3:1515908-1515927 None:intergenic 55.0%
! GCGAATCTGCTGAGTTGGAG+GGG - chr6_3:1515907-1515926 None:intergenic 55.0%
! CAGCGAATCTGCTGAGTTGG+AGG - chr6_3:1515905-1515924 None:intergenic 55.0%
CGTCAGCGAATCTGCTGAGT+TGG - chr6_3:1515902-1515921 None:intergenic 55.0%
ACTCAGCAGATTCGCTGACG+TGG + chr6_3:1514626-1514645 Msa0933020:intron 55.0%
ACTCAGCAGATTCGCTGACG+TGG - chr6_3:1514626-1514645 None:intergenic 55.0%
CGTCAGCGAATCTGCTGAGT+TGG + chr6_3:1515902-1515921 Msa0933020:intron 55.0%
! CAGCGAATCTGCTGAGTTGG+AGG + chr6_3:1515905-1515924 Msa0933020:intron 55.0%
! GCGAATCTGCTGAGTTGGAG+GGG + chr6_3:1515907-1515926 Msa0933020:intron 55.0%
! CGAATCTGCTGAGTTGGAGG+GGG + chr6_3:1515908-1515927 Msa0933020:intron 55.0%
! GAATCTGCTGAGTTGGAGGG+GGG + chr6_3:1515909-1515928 Msa0933020:intron 55.0%
!!! GGTGTGCTGCTGCTTTTGTG+TGG - chr6_3:1516243-1516262 None:intergenic 55.0%
!! GGATGCACATTGGTGCCATG+TGG - chr6_3:1516384-1516403 None:intergenic 55.0%
CGAATCCGTATCACGACGTC+CGG - chr6_3:1516414-1516433 None:intergenic 55.0%
! AAGGTCTGGGGTTCAAACCC+TGG + chr6_3:1517255-1517274 Msa0933020:intron 55.0%
CGGTCCCTTTCTCTTGAGAC+CGG - chr6_3:1517339-1517358 None:intergenic 55.0%
GGAGAGACACAGTGTGTGAG+AGG + chr6_3:1517736-1517755 Msa0933020:intron 55.0%
TGTTCGCAGCAAATGGGTCG+TGG + chr6_3:1519620-1519639 Msa0933020:intron 55.0%
!! GGGTCGTGGAAGAGTATCTG+TGG + chr6_3:1519634-1519653 Msa0933020:intron 55.0%
! GCTCCCAACTTTGAAGGCCA+AGG + chr6_3:1519776-1519795 Msa0933020:CDS 55.0%
!! ATGGTAGAAGCTCGGTGCTC+GGG - chr6_3:1520356-1520375 None:intergenic 55.0%
!! CATGGTAGAAGCTCGGTGCT+CGG - chr6_3:1520357-1520376 None:intergenic 55.0%
GCTCCCAACCTTGAAGGCCA+AGG + chr6_3:1513240-1513259 Msa0933020:CDS 60.0%
GCTCGGGAAGCCATAGGAGA+AGG - chr6_3:1520340-1520359 None:intergenic 60.0%
TACAGGCCGAACGTCAGGGG+CGG + chr6_3:1514410-1514429 Msa0933020:intron 65.0%
CTGGATCCGCCCCTGACGTT+CGG - chr6_3:1514419-1514438 None:intergenic 65.0%
!!! GAGGGGGGAGGGGTGTTTTC+CGG - chr6_3:1515924-1515943 None:intergenic 65.0%
! TGCTGAGTTGGAGGGGGGAG+GGG - chr6_3:1515914-1515933 None:intergenic 65.0%
! CTGCTGAGTTGGAGGGGGGA+GGG - chr6_3:1515913-1515932 None:intergenic 65.0%
! TCTGCTGAGTTGGAGGGGGG+AGG - chr6_3:1515912-1515931 None:intergenic 65.0%
!! TTCGCTGACGTGGCGCTGAC+AGG + chr6_3:1514636-1514655 Msa0933020:intron 65.0%
!! TCGCTGACGTGGCGCTGACA+GGG + chr6_3:1514637-1514656 Msa0933020:intron 65.0%
! GCGCTGACAGGACGCTGACT+TGG - chr6_3:1515880-1515899 None:intergenic 65.0%
!! TTCGCTGACGTGGCGCTGAC+AGG - chr6_3:1514636-1514655 None:intergenic 65.0%
! TCTGCTGAGTTGGAGGGGGG+AGG + chr6_3:1515912-1515931 Msa0933020:intron 65.0%
! CTGCTGAGTTGGAGGGGGGA+GGG + chr6_3:1515913-1515932 Msa0933020:intron 65.0%
! TGCTGAGTTGGAGGGGGGAG+GGG + chr6_3:1515914-1515933 Msa0933020:intron 65.0%
!!! GAGGGGGGAGGGGTGTTTTC+CGG + chr6_3:1515924-1515943 Msa0933020:intron 65.0%
CAATGTGCATCCGCCCCTGC+CGG + chr6_3:1516392-1516411 Msa0933020:intron 65.0%
CGTATCACGACGTCCGGCAG+GGG - chr6_3:1516408-1516427 None:intergenic 65.0%
CCGTATCACGACGTCCGGCA+GGG - chr6_3:1516409-1516428 None:intergenic 65.0%
CCCTGCCGGACGTCGTGATA+CGG + chr6_3:1516406-1516425 Msa0933020:intron 65.0%
TCCGTATCACGACGTCCGGC+AGG - chr6_3:1516410-1516429 None:intergenic 65.0%
!! CTCGGTGCTCGGGAAGCCAT+AGG - chr6_3:1520346-1520365 None:intergenic 65.0%
!! GCGCTGACAGGGCGCTGACT+TGG + chr6_3:1514648-1514667 Msa0933020:intron 70.0%
CGGCAGGGGCGGATGCACAT+TGG - chr6_3:1516394-1516413 None:intergenic 70.0%
ATCACGACGTCCGGCAGGGG+CGG - chr6_3:1516405-1516424 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 1511564 1520615 1511564 ID=Msa0933020;Name=Msa0933020
chr6_3 mRNA 1511564 1520615 1511564 ID=Msa0933020-mRNA-1;Parent=Msa0933020;Name=Msa0933020-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|0.55|0.5|0.44|9|0|617
chr6_3 exon 1511564 1511567 1511564 ID=Msa0933020-mRNA-1:exon:547;Parent=Msa0933020-mRNA-1
chr6_3 exon 1511740 1511747 1511740 ID=Msa0933020-mRNA-1:exon:548;Parent=Msa0933020-mRNA-1
chr6_3 exon 1511825 1511832 1511825 ID=Msa0933020-mRNA-1:exon:549;Parent=Msa0933020-mRNA-1
chr6_3 exon 1512002 1512008 1512002 ID=Msa0933020-mRNA-1:exon:550;Parent=Msa0933020-mRNA-1
chr6_3 exon 1513093 1513266 1513093 ID=Msa0933020-mRNA-1:exon:551;Parent=Msa0933020-mRNA-1
chr6_3 exon 1513303 1513496 1513303 ID=Msa0933020-mRNA-1:exon:552;Parent=Msa0933020-mRNA-1
chr6_3 exon 1513509 1513752 1513509 ID=Msa0933020-mRNA-1:exon:553;Parent=Msa0933020-mRNA-1
chr6_3 exon 1513816 1514060 1513816 ID=Msa0933020-mRNA-1:exon:554;Parent=Msa0933020-mRNA-1
chr6_3 exon 1519646 1520615 1519646 ID=Msa0933020-mRNA-1:exon:555;Parent=Msa0933020-mRNA-1
chr6_3 CDS 1511564 1511567 1511564 ID=Msa0933020-mRNA-1:cds;Parent=Msa0933020-mRNA-1
chr6_3 CDS 1511740 1511747 1511740 ID=Msa0933020-mRNA-1:cds;Parent=Msa0933020-mRNA-1
chr6_3 CDS 1511825 1511832 1511825 ID=Msa0933020-mRNA-1:cds;Parent=Msa0933020-mRNA-1
chr6_3 CDS 1512002 1512008 1512002 ID=Msa0933020-mRNA-1:cds;Parent=Msa0933020-mRNA-1
chr6_3 CDS 1513093 1513266 1513093 ID=Msa0933020-mRNA-1:cds;Parent=Msa0933020-mRNA-1
chr6_3 CDS 1513303 1513496 1513303 ID=Msa0933020-mRNA-1:cds;Parent=Msa0933020-mRNA-1
chr6_3 CDS 1513509 1513752 1513509 ID=Msa0933020-mRNA-1:cds;Parent=Msa0933020-mRNA-1
chr6_3 CDS 1513816 1514060 1513816 ID=Msa0933020-mRNA-1:cds;Parent=Msa0933020-mRNA-1
chr6_3 CDS 1519646 1520615 1519646 ID=Msa0933020-mRNA-1:cds;Parent=Msa0933020-mRNA-1
Gene Sequence

>Msa0933020

ATGGTGAATATATTTCACAAATTCGAGAAAATGGGTCGTGGAAGAATATCTATGGAACTCATTCAAAAGGAGAGATCTAGAAAGATAACATTGCAAAAGAGAAAGGATGGTTTAATAAAGAAAGCAAAGGAATTTTCCATTCTTTGTGATGTTGATGTTTGTTTGATCCTGTATGCTCCCAACCTTGAAGGCCAAGGATATGTGCAAAGAATTCTTCAAAATTACTATGACACAACAATTGATAGGCGTCCTAAGACCTATGATGTTCAAGAATATTTTAAGGAGAGGATGAAAAAAGTTGAATTAGAGATTTACAATGTGCGTAAAGAGAGGTTAAAGATGATGTATCCAACTTGGGATGAATCTTACAATTCTTTTGGATACGAACAATTGAGGTTTTTGGATTCTAAGCTTGACGCATGTGATCAAAAGATGAATATGCGAAAAGATGAATCGCACAAGGTCAATAACCTTATTAGTTCTCCTTACTTGACCTCAAATTCAGGTACCAACTTCAATCTCATGCATACCAACATGTCTCAAGGGAAAATTTACTCTCCATTGATGAATATTTGTGATAAAAATCCCATAGGGTTTTGGCCAATTCAATTGGCACAAAGCTCTCAACCTTCCCTTATGGTTAATGCTAATGTTATGTATGATCCCAAAATCGATATGAAGAAGAAGGATGAAGCTGAAAATGATAAAAACTTGCCATCATACTATTACAATGGAAATGCAATGATAATGCAATCATATCCTATTGCTATGCCTACTCCTCCTTTTCAGAATCTTGCAAACCTATCCCATGAATATCTACTTTATGGATCCTATGATATGGATAGTATTCAAGCTCAACTGTTCAACTCCATGAATGGAACGAAAGTATCTGTGGAATTCATTCCAAAGGAGAAATCTAGGAAGATAGTATTGCAAAAGAGAAAGATTGGTTTGATGAAAAAAGTTGAGGAACTTTCCATTCTTTGTGATGTTGATGCTTGTGTGATTCTCTATGCTCCCAACTTTGAAGGCCAAGGGTATGCTGAACCTGAAACATGGCCGAAAGACACAAAAGAGGTGCAAAGAATTCTTCAAAGGTACTATAACACAACAATTGATAGGCGTCTTAAGACCTATGATGTTCAAGAATATTTTAACGAAAGGATGAAAAAAGTTGAATTTGAGATTTCCAAAGTGCGCAAAGAGAAGTTCAAGATGAAGTATCAAACTTGGGATGAATCTTTCAATTCTCTTGGACATGAACAATTGAGGTTATTTGCTAGGATCTTGGATTCTAAGCTTGATGCATGCAATCTAAAGATGAATATGCTAGAAGGAGATCTTCTGGGAAAATCAATAGCTCTTGAGACAAACAAGATTGATAATCTTAATAGTTCTCCCTACTTAGACTCAAATCCAAGTAGCCTCAATCTCGTGCAAAACAACATGTCTCAAGCACACATTTATCCTCCATTGATGAATATTAGTGATAAAAACCCTTTAGGGTTTTGGCCACTTATATCGGGACAAAGCTCTCAACCCTCTCATATGGTTTCAACTGCACAAAGCTCTCAACCTTCTCCTATGGCTTCCCGAGCACCGAGCTTCTACCATGTAGAGTCTAAGGCGGGTAGATATGCACAATCTTACCCTTGCAAGCAGATTGATTTTAATTGGACCCATCATGTTGATGCTAATGTTACCAATGATCTCAAAATCAGTATGAAGAAGAAGGATGAAGATGAAAATGATAAAAACTTGGCACCATACTATTACAATGGAAATACAATGATAATGCAATCATATCCCATTGCTATGCCTACTCTTCCTTTTCAAAATCTTTCAAACCTATGA

Protein sequence

>Msa0933020

MVNIFHKFEKMGRGRISMELIQKERSRKITLQKRKDGLIKKAKEFSILCDVDVCLILYAPNLEGQGYVQRILQNYYDTTIDRRPKTYDVQEYFKERMKKVELEIYNVRKERLKMMYPTWDESYNSFGYEQLRFLDSKLDACDQKMNMRKDESHKVNNLISSPYLTSNSGTNFNLMHTNMSQGKIYSPLMNICDKNPIGFWPIQLAQSSQPSLMVNANVMYDPKIDMKKKDEAENDKNLPSYYYNGNAMIMQSYPIAMPTPPFQNLANLSHEYLLYGSYDMDSIQAQLFNSMNGTKVSVEFIPKEKSRKIVLQKRKIGLMKKVEELSILCDVDACVILYAPNFEGQGYAEPETWPKDTKEVQRILQRYYNTTIDRRLKTYDVQEYFNERMKKVEFEISKVRKEKFKMKYQTWDESFNSLGHEQLRLFARILDSKLDACNLKMNMLEGDLLGKSIALETNKIDNLNSSPYLDSNPSSLNLVQNNMSQAHIYPPLMNISDKNPLGFWPLISGQSSQPSHMVSTAQSSQPSPMASRAPSFYHVESKAGRYAQSYPCKQIDFNWTHHVDANVTNDLKISMKKKDEDENDKNLAPYYYNGNTMIMQSYPIAMPTLPFQNLSNL*