AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0933530

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0933530 MtrunA17_Chr6g0449861 83.708 356 47 4 282 635 9 355 0.0 589
Msa0933530 MtrunA17_Chr6g0449861 57.593 349 84 6 1 286 8 355 1.93e-118 357
Msa0933530 MtrunA17_Chr6g0449851 84.444 315 19 3 2 286 1 315 0.0 528
Msa0933530 MtrunA17_Chr6g0449851 62.817 355 91 5 282 635 1 315 3.69e-146 426
Msa0933530 MtrunA17_Chr6g0457851 66.575 362 105 3 278 635 7 356 4.77e-165 476
Msa0933530 MtrunA17_Chr6g0457851 56.772 347 89 4 1 286 10 356 4.48e-121 363
Msa0933530 MtrunA17_Chr1g0212151 61.141 368 108 6 282 635 1 347 3.80e-137 404
Msa0933530 MtrunA17_Chr1g0212151 53.090 356 87 8 2 286 1 347 1.94e-107 328
Msa0933530 MtrunA17_Chr1g0212471 31.319 182 124 1 282 463 1 181 4.44e-28 111
Msa0933530 MtrunA17_Chr1g0212471 35.256 156 86 2 2 142 1 156 1.09e-23 99.0
Msa0933530 MtrunA17_Chr4g0059631 36.842 171 100 2 282 452 1 163 8.48e-28 112
Msa0933530 MtrunA17_Chr4g0059631 35.948 153 85 3 2 141 1 153 1.62e-23 100
Msa0933530 MtrunA17_Chr4g0022641 31.771 192 118 2 282 473 1 179 7.07e-25 107
Msa0933530 MtrunA17_Chr4g0022641 34.807 181 103 4 2 169 1 179 1.08e-24 106
Msa0933530 MtrunA17_Chr2g0303981 36.184 152 92 2 286 436 7 154 3.11e-24 100
Msa0933530 MtrunA17_Chr2g0303981 36.000 150 83 3 4 140 5 154 4.85e-22 94.4
Msa0933530 MtrunA17_Chr5g0432691 31.515 165 99 5 282 438 1 159 1.01e-14 72.4
Msa0933530 MtrunA17_Chr3g0107351 31.481 162 97 5 285 438 3 158 1.30e-14 72.0
Msa0933530 MtrunA17_Chr3g0107341 34.356 163 91 6 285 438 3 158 2.38e-14 71.2
Msa0933530 MtrunA17_Chr3g0107381 23.581 229 153 8 282 496 1 221 2.66e-14 72.8
Msa0933530 MtrunA17_Chr2g0283941 33.945 109 65 3 282 389 1 103 2.31e-13 70.5
Msa0933530 MtrunA17_Chr3g0107361 32.099 162 96 6 285 438 3 158 2.47e-13 68.2
Msa0933530 MtrunA17_Chr1g0197321 28.221 163 103 4 282 436 1 157 2.58e-13 68.2
Msa0933530 MtrunA17_Chr8g0380021 28.667 150 94 3 1 142 16 160 5.50e-13 69.3
Msa0933530 MtrunA17_Chr2g0284911 28.758 153 90 3 1 142 15 159 1.10e-12 68.6
Msa0933530 MtrunA17_Chr3g0107331 34.259 108 64 3 286 392 4 105 1.63e-12 65.9
Msa0933530 MtrunA17_Chr2g0279821 28.144 167 94 5 2 150 1 159 1.95e-12 67.4
Msa0933530 MtrunA17_Chr3g0134451 33.333 102 62 2 2 98 1 101 2.08e-12 68.6
Msa0933530 MtrunA17_Chr5g0420351 31.481 108 68 2 282 389 1 102 3.23e-12 65.1
Msa0933530 MtrunA17_Chr1g0197261 30.303 165 96 5 282 436 1 156 6.59e-12 63.9
Msa0933530 MtrunA17_Chr5g0425191 47.059 51 27 0 2 52 1 51 9.62e-12 62.0
Msa0933530 MtrunA17_Chr5g0404951 29.932 147 91 4 2 140 1 143 1.82e-11 64.7
Msa0933530 MtrunA17_Chr4g0061691 28.846 156 85 6 2 142 1 145 2.69e-11 63.9
Msa0933530 MtrunA17_Chr8g0351751 33.962 106 61 4 282 384 1 100 2.80e-11 64.3
Msa0933530 MtrunA17_Chr4g0014321 37.288 118 59 5 282 398 1 104 2.88e-11 63.9
Msa0933530 MtrunA17_Chr7g0246381 44.898 49 27 0 2 50 1 49 6.85e-11 58.5
Msa0933530 MtrunA17_Chr1g0173161 48.980 49 25 0 2 50 1 49 7.01e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0933530 AT5G55690.1 31.061 264 130 11 287 538 6 229 2.62e-21 94.7
Msa0933530 AT5G55690.1 38.710 124 56 2 2 112 1 117 2.71e-16 80.1
Msa0933530 AT5G55690.2 31.061 264 130 11 287 538 6 229 2.62e-21 94.7
Msa0933530 AT5G55690.2 38.710 124 56 2 2 112 1 117 2.71e-16 80.1
Msa0933530 AT5G58890.1 34.507 142 88 3 287 426 6 144 2.00e-16 80.9
Msa0933530 AT3G18650.1 35.556 135 73 5 297 425 31 157 6.34e-13 71.2
Msa0933530 AT3G18650.1 35.200 125 69 4 17 130 31 154 2.06e-11 66.6
Msa0933530 AT2G22630.1 55.102 49 22 0 2 50 1 49 4.47e-12 66.6
Msa0933530 AT2G22630.2 55.102 49 22 0 2 50 1 49 4.47e-12 66.6
Msa0933530 AT3G57230.1 27.152 151 92 6 2 142 1 143 5.16e-12 66.6
Msa0933530 AT3G57230.4 27.152 151 92 6 2 142 1 143 5.16e-12 66.6
Msa0933530 AT1G22590.2 29.193 161 103 4 282 437 1 155 5.46e-12 64.7
Msa0933530 AT4G09960.5 28.289 152 90 4 2 142 11 154 1.06e-11 65.9
Msa0933530 AT4G18960.1 28.758 153 90 4 1 142 16 160 1.09e-11 65.9
Msa0933530 AT4G09960.1 28.289 152 90 4 2 142 1 144 1.13e-11 65.5
Msa0933530 AT4G09960.6 28.289 152 90 4 2 142 2 145 1.15e-11 65.5
Msa0933530 AT4G37940.3 27.815 151 91 3 2 142 1 143 1.21e-11 64.3
Msa0933530 AT3G57390.3 46.667 75 32 2 2 70 1 73 1.34e-11 65.1
Msa0933530 AT4G09960.2 27.815 151 90 4 2 141 1 143 1.37e-11 65.1
Msa0933530 AT2G42830.1 26.797 153 93 3 1 142 15 159 1.65e-11 65.5
Msa0933530 AT3G58780.5 26.144 153 94 3 1 142 21 165 1.74e-11 65.5
Msa0933530 AT4G09960.3 28.105 153 91 4 1 142 26 170 1.83e-11 65.5
Msa0933530 AT4G37940.1 27.815 151 91 3 2 142 1 143 1.86e-11 64.7
Msa0933530 AT3G58780.1 26.144 153 94 3 1 142 15 159 1.91e-11 65.1
Msa0933530 AT2G42830.2 26.797 153 93 3 1 142 15 159 1.93e-11 65.1
Msa0933530 AT1G65330.1 25.263 285 156 13 286 564 4 237 2.39e-11 65.5
Msa0933530 AT3G05860.2 36.364 77 43 2 282 358 1 71 2.64e-11 63.9
Msa0933530 AT3G57390.1 46.667 75 32 2 2 70 1 73 2.71e-11 64.7
Msa0933530 AT3G05860.3 37.662 77 42 3 282 358 1 71 2.81e-11 64.7
Msa0933530 AT4G37940.4 28.188 149 89 3 2 140 1 141 2.99e-11 63.9
Msa0933530 AT3G57230.2 26.846 149 91 6 2 140 1 141 3.26e-11 62.0
Msa0933530 AT3G05860.1 37.662 77 42 3 282 358 1 71 3.73e-11 64.7
Msa0933530 AT5G23260.2 29.932 147 93 3 2 142 1 143 5.31e-11 63.9
Msa0933530 AT4G09960.4 28.105 153 91 4 1 142 95 239 6.63e-11 64.7
Msa0933530 AT5G20240.2 49.020 51 26 0 2 52 1 51 7.50e-11 61.2
Msa0933530 AT1G31640.1 30.000 110 69 3 285 393 3 105 8.06e-11 65.1
Msa0933530 AT5G23260.4 29.730 148 94 3 1 142 16 159 8.43e-11 63.5
Msa0933530 AT5G27960.1 27.742 155 105 3 286 439 3 151 8.66e-11 64.3
Msa0933530 AT3G58780.2 24.648 142 103 1 1 142 15 152 8.73e-11 63.2
Msa0933530 AT5G23260.3 33.333 99 60 1 2 94 1 99 8.94e-11 63.2
Msa0933530 AT1G77950.3 40.278 72 38 1 2 68 1 72 9.19e-11 63.2
Msa0933530 AT1G77950.2 40.278 72 38 1 2 68 1 72 9.19e-11 63.2
Msa0933530 AT1G77950.1 40.278 72 38 1 2 68 1 72 9.19e-11 63.2
Msa0933530 AT1G77950.4 40.278 72 38 1 2 68 1 72 9.19e-11 63.2
Msa0933530 AT3G58780.4 25.974 154 95 3 1 143 15 160 9.44e-11 63.5

Find 118 sgRNAs with CRISPR-Local

Find 322 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTTCTTCATATCGATTT+TGG 0.101762 6_3:+2011202 None:intergenic
TCCCATGAATATCTACTTTA+TGG 0.106807 6_3:-2011062 Msa0933530:CDS
GTGTCTTTCGGCCATGTTTC+AGG 0.186338 6_3:+2006707 None:intergenic
TCCCATGAACATCTACTTAA+TGG 0.215986 6_3:-2005903 Msa0933530:CDS
GATGAATCTTACAATTCTTT+TGG 0.252372 6_3:-2011584 Msa0933530:CDS
GTATTTCCATTGTAATAGTA+TGG 0.279464 6_3:+2005990 None:intergenic
TCTTGAACATCATAGGTCTT+AGG 0.310978 6_3:+2011692 None:intergenic
CCTTACTTGACCTCAAATTC+AGG 0.312584 6_3:-2011446 Msa0933530:CDS
ATCTTCCTAGATTTCTCCTT+TGG 0.315866 6_3:+2006851 None:intergenic
TATGCTAGAAGGAGATCTTC+TGG 0.319876 6_3:-2006429 Msa0933530:CDS
TTGAAGAATATTTGTATCAT+AGG 0.325130 6_3:+2005878 None:intergenic
AGGCTACTTCGTTCCATTCA+TGG 0.325169 6_3:+2010998 None:intergenic
ACTTTATGGATCCTATGATA+TGG 0.335816 6_3:-2011048 Msa0933530:CDS
CAACATATCCTTGGCCTTCA+AGG 0.352632 6_3:+2011795 None:intergenic
AAGCTCTCAACCTTCCCTTA+TGG 0.354140 6_3:-2011312 Msa0933530:intron
AATGAATCTTTCAATTCTCT+TGG 0.356712 6_3:-2006521 Msa0933530:CDS
TCAAGTAAGGAGAACTAATA+AGG 0.363002 6_3:+2011459 None:intergenic
AAAATATTCTTGAACATCAT+AGG 0.366937 6_3:+2006622 None:intergenic
GGGTCGTGGAAGAATATCTA+TGG 0.367126 6_3:-2011945 Msa0933530:CDS
GAGCTTTGTTCCAATTGAAT+TGG 0.369750 6_3:+2011329 None:intergenic
CTTCTACCATGTAGAGTCTA+AGG 0.376305 6_3:-2006150 Msa0933530:CDS
CTCTATGCTCCCAACTTTGA+AGG 0.376410 6_3:-2006746 Msa0933530:CDS
GAGGTTATTTGCTAGGATCT+TGG 0.377459 6_3:-2006486 Msa0933530:CDS
TACCCTTGGCCTTCAAAGTT+GGG 0.397006 6_3:+2006737 None:intergenic
AAAATATTCTTGAACATCAT+AGG 0.416188 6_3:+2011685 None:intergenic
TCCATGAGATTGAGGCTACT+TGG 0.419537 6_3:+2006338 None:intergenic
TATCCTTGGCCTTCAAGGTT+GGG 0.419769 6_3:+2011800 None:intergenic
CTGTATGCTCCCAACCTTGA+AGG 0.420817 6_3:-2011809 Msa0933530:CDS
CTAAAGATGAATATGCTAGA+AGG 0.421397 6_3:-2006440 Msa0933530:CDS
GTTACCAATGATCTCAAAAT+CGG 0.424316 6_3:-2006056 Msa0933530:CDS
TCATTCCAAAGGAGAAATCT+AGG 0.429671 6_3:-2006856 Msa0933530:CDS
TTGAATACTATCCATATCAT+AGG 0.430128 6_3:+2011037 None:intergenic
CTCTGTGCTCGGGAAACAAC+AGG 0.430671 6_3:+2006173 None:intergenic
AACATCAACATCACAAAGAA+TGG 0.436469 6_3:+2011841 None:intergenic
AAACTTCTCTTTGCGCACTT+TGG 0.438281 6_3:+2006565 None:intergenic
ATCCATAAAGTAGATATTCA+TGG 0.445056 6_3:+2011060 None:intergenic
TTAAAATCAATTTGCTTGCA+AGG 0.447756 6_3:+2006104 None:intergenic
ATACCCTTGGCCTTCAAAGT+TGG 0.453181 6_3:+2006736 None:intergenic
AGCATCAACATCACAAAGAA+TGG 0.454348 6_3:+2006778 None:intergenic
ACTATGACACAACAATTGAT+AGG 0.455411 6_3:-2011718 Msa0933530:CDS
ATCCATTAAGTAGATGTTCA+TGG 0.457427 6_3:+2005901 None:intergenic
TAAGTAGATGTTCATGGGAT+AGG 0.458812 6_3:+2005907 None:intergenic
ACTATAACACAACAATTGAT+AGG 0.461207 6_3:-2006655 Msa0933530:CDS
CTCTTGGACATGAACAATTG+AGG 0.461839 6_3:-2006505 Msa0933530:CDS
GGAGGAGTAGGCATAGCAAT+AGG 0.462020 6_3:+2011107 None:intergenic
ATCTATGGAACTCATTCAAA+AGG 0.463531 6_3:-2011930 Msa0933530:CDS
AACAATTGAGGTTATTTGCT+AGG 0.466918 6_3:-2006493 Msa0933530:CDS
TTTCAGGTTCAGCATACCCT+TGG 0.467005 6_3:+2006723 None:intergenic
CAACTGTTCAACTCCATGAA+TGG 0.470369 6_3:-2011011 Msa0933530:CDS
TTATCACAAATATTCATCAA+TGG 0.474002 6_3:+2011371 None:intergenic
ACTTGGATATGAGTCTAAGT+AGG 0.474927 6_3:+2006355 None:intergenic
AGCTCAAATGTTCAACTACA+TGG 0.476126 6_3:-2005856 Msa0933530:CDS
TTTCCATTGTAATAGTATGA+TGG 0.479664 6_3:+2011152 None:intergenic
ATATTGTGTTCATAGAAAAT+GGG 0.480214 6_3:-2011965 None:intergenic
TTAAGATGAAGTATCAAACT+TGG 0.482451 6_3:-2006544 Msa0933530:CDS
AAGCTCTCAACCCTCTCATA+TGG 0.482453 6_3:-2006225 Msa0933530:CDS
ATGCTAGAAGGAGATCTTCT+GGG 0.483728 6_3:-2006428 Msa0933530:CDS
CCTGAATTTGAGGTCAAGTA+AGG 0.484340 6_3:+2011446 None:intergenic
TAAGTGGCCAAAACCCTAAA+GGG 0.486281 6_3:+2006258 None:intergenic
AAAGTAGATATTCATGGGAT+AGG 0.486977 6_3:+2011066 None:intergenic
TTTCAGGTTCAACATATCCT+TGG 0.488478 6_3:+2011786 None:intergenic
TTATCACTAATATTCATCAA+TGG 0.491553 6_3:+2006284 None:intergenic
TAAAATCAATTTGCTTGCAA+GGG 0.492496 6_3:+2006105 None:intergenic
TCCAAGTAGCCTCAATCTCA+TGG 0.494395 6_3:-2006339 Msa0933530:CDS
TAACATTAGCATCAACATGA+TGG 0.501943 6_3:+2006075 None:intergenic
ATATCCTTGGCCTTCAAGGT+TGG 0.502086 6_3:+2011799 None:intergenic
GAAGTTGGTACCTGAATTTG+AGG 0.503776 6_3:+2011436 None:intergenic
CAAAATCGATATGAAGAAGA+AGG 0.504284 6_3:-2011201 Msa0933530:CDS
GATAACATTGCAAAAGAGAA+AGG 0.505631 6_3:-2011894 Msa0933530:CDS
ATGGTAGAAGCTCTGTGCTC+GGG 0.509126 6_3:+2006163 None:intergenic
GCTCCCAACTTTGAAGGCCA+AGG 0.509495 6_3:-2006740 Msa0933530:CDS
GAGCTTTGACCCGATATAAG+TGG 0.512541 6_3:+2006242 None:intergenic
TTGCCATCATACTATTACAA+TGG 0.513046 6_3:-2011155 Msa0933530:CDS
TTGTGAACTGGAAACCATAA+GGG 0.517232 6_3:+2011298 None:intergenic
ATAAGTGGCCAAAACCCTAA+AGG 0.517760 6_3:+2006257 None:intergenic
TTGAATTGGCCAAAACCCTA+AGG 0.530156 6_3:+2011343 None:intergenic
CATGGTAGAAGCTCTGTGCT+CGG 0.530303 6_3:+2006162 None:intergenic
TAAAGATGATGTATCCAACT+TGG 0.530838 6_3:-2011607 Msa0933530:CDS
CAAAATCGGTATGAAGAAGA+AGG 0.532914 6_3:-2006042 Msa0933530:CDS
CTTCAAGGTTGGGAGCATAC+AGG 0.533279 6_3:+2011810 None:intergenic
TTGGCACCATACTATTACAA+TGG 0.540050 6_3:-2005996 Msa0933530:CDS
GGAAGAGTAGGCATAGCAAT+GGG 0.540404 6_3:+2005948 None:intergenic
AGGTTTGCAAGATTCTGAAA+AGG 0.545328 6_3:+2011086 None:intergenic
CAAATGTTCAACTACATGGA+TGG 0.546493 6_3:-2005852 Msa0933530:CDS
TCCATAAAGTAGATATTCAT+GGG 0.546951 6_3:+2011061 None:intergenic
AGATTCTGAAAAGGAGGAGT+AGG 0.549609 6_3:+2011095 None:intergenic
CTTGGATATGAGTCTAAGTA+GGG 0.551448 6_3:+2006356 None:intergenic
TCCATTAAGTAGATGTTCAT+GGG 0.553962 6_3:+2005902 None:intergenic
ATGCATACCAACATGTCTCA+AGG 0.563493 6_3:-2011407 Msa0933530:CDS
TGCAGTTGAAACCATATGAG+AGG 0.566645 6_3:+2006214 None:intergenic
GGTATGCATGAGATTGAAGT+TGG 0.570442 6_3:+2011421 None:intergenic
TGTTCATAGAAAATGGGTCG+TGG 0.571043 6_3:-2011959 None:intergenic
TGTTCAACTACATGGATGGA+AGG 0.573547 6_3:-2005848 Msa0933530:CDS
AACATTAGCATCAACATGAT+GGG 0.577246 6_3:+2006076 None:intergenic
TGAATTGGCCAAAACCCTAA+GGG 0.580427 6_3:+2011344 None:intergenic
ACATTGCAAAAGAGAAAGGA+TGG 0.582137 6_3:-2011890 Msa0933530:CDS
TTGTAAGATTCATCCCAAGT+TGG 0.584895 6_3:+2011593 None:intergenic
ATCTGTGGAATTCATTCCAA+AGG 0.586943 6_3:-2006867 Msa0933530:CDS
CTCCCAACTTTGAAGGCCAA+GGG 0.588006 6_3:-2006739 Msa0933530:CDS
AAAGATGATGTATCCAACTT+GGG 0.588589 6_3:-2011606 Msa0933530:CDS
TACCATGTAGAGTCTAAGGC+GGG 0.596889 6_3:-2006146 Msa0933530:CDS
TCACTAATATTCATCAATGG+AGG 0.597003 6_3:+2006287 None:intergenic
GCTCCCAACCTTGAAGGCCA+AGG 0.597883 6_3:-2011803 Msa0933530:CDS
TTTACAAAGTGCGTAAAGAG+AGG 0.599078 6_3:-2011631 Msa0933530:CDS
TACCCGCCTTAGACTCTACA+TGG 0.600460 6_3:+2006144 None:intergenic
AGGTGCAAAGAATTCTTCAA+AGG 0.603453 6_3:-2006679 Msa0933530:CDS
TTTGCAAGATTCTGAAAAGG+AGG 0.605154 6_3:+2011089 None:intergenic
GCTCGGGAAACAACAGGAGA+AGG 0.605698 6_3:+2006179 None:intergenic
TGCATACCAACATGTCTCAA+GGG 0.610432 6_3:-2011406 Msa0933530:CDS
AGGAAGAGTAGGCATAGCAA+TGG 0.623758 6_3:+2005947 None:intergenic
GGGTCGTGGAAGAGTATCTG+TGG 0.635324 6_3:-2006882 Msa0933530:intron
GGTATGCTGAACCTGAAACA+TGG 0.642114 6_3:-2006718 Msa0933530:CDS
TGGTTTAATAAAGAAAGCAA+AGG 0.644031 6_3:-2011870 Msa0933530:CDS
CTACCATGTAGAGTCTAAGG+CGG 0.656223 6_3:-2006147 Msa0933530:CDS
ATGGCCGAAAGACACAAAAG+AGG 0.657999 6_3:-2006699 Msa0933530:CDS
GAACTGGAAACCATAAGGGA+AGG 0.661731 6_3:+2011302 None:intergenic
GCGAAAAGATGAATCGCACA+AGG 0.697271 6_3:-2011489 Msa0933530:CDS
GCAGTTGAAACCATATGAGA+GGG 0.704855 6_3:+2006215 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATATATATATATATATAT+GGG - chr6_3:2007004-2007023 Msa0933530:intron 0.0%
!! TTAATATATATATATATATA+GGG + chr6_3:2007798-2007817 None:intergenic 0.0%
!! ATTAATATATATATATATAT+AGG + chr6_3:2007799-2007818 None:intergenic 0.0%
!! TTTCTCAAAAATAAAAAAAT+GGG + chr6_3:2007106-2007125 None:intergenic 10.0%
!! AATTATTTAGATTAATTTCT+TGG + chr6_3:2008781-2008800 None:intergenic 10.0%
!!! TCACTTTTTTATATAATAAT+CGG - chr6_3:2008812-2008831 Msa0933530:intron 10.0%
!!! TTATTTTTTATTTCCTTTTT+TGG - chr6_3:2008997-2009016 Msa0933530:intron 10.0%
!! TAAAAAAACTTATATGTATA+TGG + chr6_3:2010191-2010210 None:intergenic 10.0%
!! GTAATTAAAAAGTAAATAAA+AGG + chr6_3:2010779-2010798 None:intergenic 10.0%
!! CAATAAACTAAACAAATAAA+TGG + chr6_3:2006897-2006916 None:intergenic 15.0%
!! CTTTCTCAAAAATAAAAAAA+TGG + chr6_3:2007107-2007126 None:intergenic 15.0%
!! TTAGCATTCTTAAAAAAAAT+AGG + chr6_3:2008216-2008235 None:intergenic 15.0%
!! AAAATAATCAATCAAATTGA+AGG + chr6_3:2008984-2009003 None:intergenic 15.0%
!!! TTCATTTTCATTATATATAG+TGG - chr6_3:2009084-2009103 Msa0933530:intron 15.0%
!! AAACAAAAATAAAATTATGC+TGG + chr6_3:2009231-2009250 None:intergenic 15.0%
!!! TTTTGTGTATTCAATAATTT+TGG - chr6_3:2009470-2009489 Msa0933530:intron 15.0%
!!! TTTGTGTATTCAATAATTTT+GGG - chr6_3:2009471-2009490 Msa0933530:intron 15.0%
!! CAAATTAAAAAAATTACGAA+AGG + chr6_3:2009501-2009520 None:intergenic 15.0%
!! AAAATATTCTTGAACATCAT+AGG + chr6_3:2006110-2006129 None:intergenic 20.0%
!!! TGATGTTCAAGAATATTTTA+AGG - chr6_3:2006111-2006130 Msa0933530:CDS 20.0%
!! TTATCACAAATATTCATCAA+TGG + chr6_3:2006424-2006443 None:intergenic 20.0%
!! CTTATACTAAAAAACTAGTA+TGG + chr6_3:2006836-2006855 None:intergenic 20.0%
!!! TTTGTTTAGTTTATTGAACT+AGG - chr6_3:2006901-2006920 Msa0933530:intron 20.0%
!!! TTGTTTAGTTTATTGAACTA+GGG - chr6_3:2006902-2006921 Msa0933530:intron 20.0%
!!! TTTTTTTTCTTGGTTTTAAG+TGG - chr6_3:2006931-2006950 Msa0933530:intron 20.0%
!! GTATTTATGTCAAAAGAAAA+AGG + chr6_3:2007084-2007103 None:intergenic 20.0%
!!! TTATTTTTGAGAAAGACAAA+AGG - chr6_3:2007112-2007131 Msa0933530:intron 20.0%
!! GAAGAACAAAAAAAAAAAAG+AGG + chr6_3:2007186-2007205 None:intergenic 20.0%
!!! TGATTTGTTATTAACAATGA+GGG + chr6_3:2007264-2007283 None:intergenic 20.0%
!!! TTGATTTGTTATTAACAATG+AGG + chr6_3:2007265-2007284 None:intergenic 20.0%
!! ACTACAAATAATACTTTGAT+GGG + chr6_3:2007404-2007423 None:intergenic 20.0%
!! AACTACAAATAATACTTTGA+TGG + chr6_3:2007405-2007424 None:intergenic 20.0%
!!! GTTTTATTATTGTTCTGATT+TGG - chr6_3:2007422-2007441 Msa0933530:intron 20.0%
!! CAAAATCAAATTAATTTCGT+TGG + chr6_3:2007478-2007497 None:intergenic 20.0%
!! TTTCCCAAAAAAACAAAAAA+TGG - chr6_3:2007695-2007714 Msa0933530:intron 20.0%
!! TTCCCAAAAAAACAAAAAAT+GGG - chr6_3:2007696-2007715 Msa0933530:intron 20.0%
!!! AACCCATTTTTTGTTTTTTT+GGG + chr6_3:2007701-2007720 None:intergenic 20.0%
!!! AAACCCATTTTTTGTTTTTT+TGG + chr6_3:2007702-2007721 None:intergenic 20.0%
!!! GTTTTTTAGTCTAAAACAAA+AGG - chr6_3:2007718-2007737 Msa0933530:intron 20.0%
!! ACAAAGATAATCTTAATCTT+TGG + chr6_3:2007911-2007930 None:intergenic 20.0%
!!! TTTTTTTTTTGTTAACTCTC+CGG - chr6_3:2008702-2008721 Msa0933530:intron 20.0%
!! TACTTTACATATTGAAACTT+TGG + chr6_3:2008754-2008773 None:intergenic 20.0%
!! AAGTTTCAATATGTAAAGTA+TGG - chr6_3:2008754-2008773 Msa0933530:intron 20.0%
!!! AGTATTCGATTGTTTTTTAA+TGG + chr6_3:2008895-2008914 None:intergenic 20.0%
!! CTAAAAGAAATGAAAATGAA+TGG + chr6_3:2009023-2009042 None:intergenic 20.0%
!! GAAAATAACATCTAAATTAG+AGG - chr6_3:2009108-2009127 Msa0933530:intron 20.0%
!! ACATAATTCAATGTAATTAC+AGG + chr6_3:2009670-2009689 None:intergenic 20.0%
!! TAACAATGATTAATCAATGT+CGG - chr6_3:2010273-2010292 Msa0933530:intron 20.0%
!! GTCTAATATTATTATGAGTT+GGG + chr6_3:2010472-2010491 None:intergenic 20.0%
!! AGTCTAATATTATTATGAGT+TGG + chr6_3:2010473-2010492 None:intergenic 20.0%
!! TGAATGTACACAAAATTAAA+TGG + chr6_3:2010666-2010685 None:intergenic 20.0%
!! AAAATATTCTTGAACATCAT+AGG + chr6_3:2006110-2006129 None:intergenic 20.0%
!!! TTCAAGAATATTTTAACGAA+AGG - chr6_3:2011179-2011198 Msa0933530:CDS 20.0%
!! TTATCACTAATATTCATCAA+TGG + chr6_3:2011511-2011530 None:intergenic 20.0%
!! AGTTGAAAATGATAAAAACT+TGG - chr6_3:2011777-2011796 Msa0933530:intron 20.0%
!! TTGAAGAATATTTGTATCAT+AGG + chr6_3:2011917-2011936 None:intergenic 20.0%
! TGGTTTAATAAAGAAAGCAA+AGG - chr6_3:2005922-2005941 Msa0933530:CDS 25.0%
!!! TTCAAGAATATTTTAAGGAG+AGG - chr6_3:2006116-2006135 Msa0933530:CDS 25.0%
!! GATGAATCTTACAATTCTTT+TGG - chr6_3:2006208-2006227 Msa0933530:CDS 25.0%
! ATTTGTGATAAAAATCCCTT+AGG - chr6_3:2006433-2006452 Msa0933530:CDS 25.0%
! TTTGTGATAAAAATCCCTTA+GGG - chr6_3:2006434-2006453 Msa0933530:CDS 25.0%
!!! TTCTTCTTCATATCGATTTT+GGG + chr6_3:2006592-2006611 None:intergenic 25.0%
! TTTCCATTGTAATAGTATGA+TGG + chr6_3:2006643-2006662 None:intergenic 25.0%
! TCCATAAAGTAGATATTCAT+GGG + chr6_3:2006734-2006753 None:intergenic 25.0%
! ATCCATAAAGTAGATATTCA+TGG + chr6_3:2006735-2006754 None:intergenic 25.0%
! TTGAATACTATCCATATCAT+AGG + chr6_3:2006758-2006777 None:intergenic 25.0%
! TCTATATTAGTACATGCATA+TGG + chr6_3:2007836-2007855 None:intergenic 25.0%
!!! GTATGTGAGTTTAATTTTAG+TGG - chr6_3:2007866-2007885 Msa0933530:intron 25.0%
!! GATTATCTTTGTTTATGTCA+CGG - chr6_3:2007919-2007938 Msa0933530:intron 25.0%
! TCACAACATATTTCTCTATT+TGG - chr6_3:2008081-2008100 Msa0933530:intron 25.0%
! CACAACATATTTCTCTATTT+GGG - chr6_3:2008082-2008101 Msa0933530:intron 25.0%
! TTCTTAAAGAAATGAACATC+TGG - chr6_3:2008158-2008177 Msa0933530:intron 25.0%
!!! AGTTTTAACCTTTTGAAAGT+CGG + chr6_3:2008249-2008268 None:intergenic 25.0%
! ACTTTCAAAAGGTTAAAACT+TGG - chr6_3:2008249-2008268 Msa0933530:intron 25.0%
! AGACTTTGTCAAAAAGTTTA+AGG + chr6_3:2008315-2008334 None:intergenic 25.0%
!!! TTTTAGAAGTTTTCTTTCGT+TGG - chr6_3:2008475-2008494 Msa0933530:intron 25.0%
! ATTGAAACTTTGGATTATCA+CGG + chr6_3:2008744-2008763 None:intergenic 25.0%
!!! ATCGATTTTTATGGTAACAA+TGG + chr6_3:2008867-2008886 None:intergenic 25.0%
!!! ATGGATTCAATCGATTTTTA+TGG + chr6_3:2008876-2008895 None:intergenic 25.0%
! ATAATCAATCAAATTGAAGG+TGG + chr6_3:2008981-2009000 None:intergenic 25.0%
! TGAAAATGAATCTCTCAAAA+AGG + chr6_3:2009074-2009093 None:intergenic 25.0%
! GTAAAAGAAGAAGAAAAACA+AGG - chr6_3:2009178-2009197 Msa0933530:intron 25.0%
! GTAAAATTTCTCTCATAGTT+AGG - chr6_3:2009324-2009343 Msa0933530:intron 25.0%
! CATAGTTAGGATTAAATACT+AGG - chr6_3:2009337-2009356 Msa0933530:intron 25.0%
! CACAAACACTTCTTAAATTA+GGG - chr6_3:2009599-2009618 Msa0933530:intron 25.0%
! TGTATATATCCATGTTTCAT+AGG - chr6_3:2009765-2009784 Msa0933530:intron 25.0%
!!! TTCTTTTTCGGTGAATAAAA+AGG + chr6_3:2010153-2010172 None:intergenic 25.0%
!!! AACTTGTAGTTCTAGAAAAT+TGG - chr6_3:2010298-2010317 Msa0933530:intron 25.0%
! ATACCAAATATATCATACCA+TGG - chr6_3:2010852-2010871 Msa0933530:intron 25.0%
! ATACCATGGTATGATATATT+TGG + chr6_3:2010858-2010877 None:intergenic 25.0%
! GTATTGCAAAAAAGAAAGAT+TGG - chr6_3:2010965-2010984 Msa0933530:intron 25.0%
! ACTATAACACAACAATTGAT+AGG - chr6_3:2011137-2011156 Msa0933530:CDS 25.0%
!! TTAAGATGAAGTATCAAACT+TGG - chr6_3:2011248-2011267 Msa0933530:intron 25.0%
! AATGAATCTTTCAATTCTCT+TGG - chr6_3:2011271-2011290 Msa0933530:intron 25.0%
! ATTAGTGATAAAAACCCTTT+AGG - chr6_3:2011520-2011539 Msa0933530:CDS 25.0%
! TTAGTGATAAAAACCCTTTA+GGG - chr6_3:2011521-2011540 Msa0933530:CDS 25.0%
!! TAAAATCAATTTGCTTGCAA+GGG + chr6_3:2011690-2011709 None:intergenic 25.0%
!! TTAAAATCAATTTGCTTGCA+AGG + chr6_3:2011691-2011710 None:intergenic 25.0%
!!! GCAAGCAAATTGATTTTAAT+TGG - chr6_3:2011692-2011711 Msa0933530:CDS 25.0%
! GTATTTCCATTGTAATAGTA+TGG + chr6_3:2011805-2011824 None:intergenic 25.0%
!!! AGGTTTGAAAGATTTTGAAA+AGG + chr6_3:2011868-2011887 None:intergenic 25.0%
ATCTATGGAACTCATTCAAA+AGG - chr6_3:2005862-2005881 Msa0933530:CDS 30.0%
GATAACATTGCAAAAGAGAA+AGG - chr6_3:2005898-2005917 Msa0933530:CDS 30.0%
AACATCAACATCACAAAGAA+TGG + chr6_3:2005954-2005973 None:intergenic 30.0%
ACTATGACACAACAATTGAT+AGG - chr6_3:2006074-2006093 Msa0933530:CDS 30.0%
TAAAGATGATGTATCCAACT+TGG - chr6_3:2006185-2006204 Msa0933530:CDS 30.0%
AAAGATGATGTATCCAACTT+GGG - chr6_3:2006186-2006205 Msa0933530:CDS 30.0%
AACAATTGAGGTCATTTGTT+AGG - chr6_3:2006236-2006255 Msa0933530:CDS 30.0%
TCAAGTAAGGAGAACTAATA+AGG + chr6_3:2006336-2006355 None:intergenic 30.0%
! ATAAAAATCCCTTAGGGTTT+TGG - chr6_3:2006440-2006459 Msa0933530:CDS 30.0%
AACATTAGCATTAACCTGAT+GGG + chr6_3:2006560-2006579 None:intergenic 30.0%
TAACATTAGCATTAACCTGA+TGG + chr6_3:2006561-2006580 None:intergenic 30.0%
!!! CTTCTTCTTCATATCGATTT+TGG + chr6_3:2006593-2006612 None:intergenic 30.0%
CAAAATCGATATGAAGAAGA+AGG - chr6_3:2006591-2006610 Msa0933530:CDS 30.0%
TTGCCATCATACTATTACAA+TGG - chr6_3:2006637-2006656 Msa0933530:CDS 30.0%
AAAGTAGATATTCATGGGAT+AGG + chr6_3:2006729-2006748 None:intergenic 30.0%
TCCCATGAATATCTACTTTA+TGG - chr6_3:2006730-2006749 Msa0933530:CDS 30.0%
ACTTTATGGATCCTATGATA+TGG - chr6_3:2006744-2006763 Msa0933530:CDS 30.0%
TTTAAGTGGAACAAATAGCT+TGG - chr6_3:2006945-2006964 Msa0933530:intron 30.0%
TTTGAGAAAGACAAAAGGAA+AGG - chr6_3:2007117-2007136 Msa0933530:intron 30.0%
AAAAAGGGATGAAGAACAAA+AGG + chr6_3:2007236-2007255 None:intergenic 30.0%
ACAATGAGGGAATGAAAAAA+GGG + chr6_3:2007251-2007270 None:intergenic 30.0%
AACAATGAGGGAATGAAAAA+AGG + chr6_3:2007252-2007271 None:intergenic 30.0%
AGAATTGAAAGAGAGAATGA+AGG + chr6_3:2007338-2007357 None:intergenic 30.0%
CAAATTAATTTCGTTGGACT+GGG + chr6_3:2007472-2007491 None:intergenic 30.0%
TCAAATTAATTTCGTTGGAC+TGG + chr6_3:2007473-2007492 None:intergenic 30.0%
GACAGTAGCAAAAACAATTA+AGG - chr6_3:2007570-2007589 Msa0933530:intron 30.0%
!! TACTTTTTGAGCTTCTTGTT+GGG + chr6_3:2007612-2007631 None:intergenic 30.0%
TTTGGGAAAGACAATAGTAA+GGG + chr6_3:2007684-2007703 None:intergenic 30.0%
!! TTTTGGGAAAGACAATAGTA+AGG + chr6_3:2007685-2007704 None:intergenic 30.0%
TATGTCACGGAACAAATATT+CGG - chr6_3:2007932-2007951 Msa0933530:intron 30.0%
TGGGTTATTAACTAGTAACA+TGG - chr6_3:2008101-2008120 Msa0933530:intron 30.0%
!! GTTTTAACCTTTTGAAAGTC+GGG + chr6_3:2008248-2008267 None:intergenic 30.0%
! TACAGCTTTGATTCCAATTA+GGG + chr6_3:2008381-2008400 None:intergenic 30.0%
! TTACAGCTTTGATTCCAATT+AGG + chr6_3:2008382-2008401 None:intergenic 30.0%
ATTCTTGCCCAATTTACAAT+AGG + chr6_3:2008958-2008977 None:intergenic 30.0%
TGAAAATGAATGGCCAAAAA+AGG + chr6_3:2009013-2009032 None:intergenic 30.0%
AGGATTAAATACTAGGTTCA+AGG - chr6_3:2009344-2009363 Msa0933530:intron 30.0%
GAGATTATGCATTTCATTGA+TGG + chr6_3:2009385-2009404 None:intergenic 30.0%
! TTGCAAAAATAGCTTTTGAG+AGG - chr6_3:2009521-2009540 Msa0933530:intron 30.0%
!! TAAGAAGTGTTTGTGCTTTA+TGG + chr6_3:2009594-2009613 None:intergenic 30.0%
GCACAAACACTTCTTAAATT+AGG - chr6_3:2009598-2009617 Msa0933530:intron 30.0%
ATGGATATATACACGAACAT+CGG + chr6_3:2009758-2009777 None:intergenic 30.0%
! TAAAAGCTCGACTTCTTTTT+CGG + chr6_3:2010165-2010184 None:intergenic 30.0%
! TCTTTTTGTCAGCATCATAA+TGG - chr6_3:2010223-2010242 Msa0933530:intron 30.0%
!!! GAAGTTTTTTCATATGCAAG+AGG - chr6_3:2010338-2010357 Msa0933530:intron 30.0%
AACTCCTAACTACTTGTTTA+AGG - chr6_3:2010370-2010389 Msa0933530:intron 30.0%
ACTCCTAACTACTTGTTTAA+GGG - chr6_3:2010371-2010390 Msa0933530:intron 30.0%
TGGATTTGAACAAGTAGTAA+GGG + chr6_3:2010405-2010424 None:intergenic 30.0%
ATGGATTTGAACAAGTAGTA+AGG + chr6_3:2010406-2010425 None:intergenic 30.0%
TCTCTGCATCTAACAAATAA+TGG + chr6_3:2010425-2010444 None:intergenic 30.0%
! TATTTGTTAGATGCAGAGAT+TGG - chr6_3:2010426-2010445 Msa0933530:intron 30.0%
TTGGGACACTAAAGATATAT+AGG + chr6_3:2010454-2010473 None:intergenic 30.0%
TATAATGCCTTAGTAGCTAT+AGG - chr6_3:2010549-2010568 Msa0933530:intron 30.0%
AAATCATCCTATAGCTACTA+AGG + chr6_3:2010559-2010578 None:intergenic 30.0%
ATAATCATGTGTTCATACCA+TGG + chr6_3:2010872-2010891 None:intergenic 30.0%
TGGTTTGATGAAAAAAGTTG+AGG - chr6_3:2010985-2011004 Msa0933530:intron 30.0%
AACAATTGAGGTTATTTGCT+AGG - chr6_3:2011299-2011318 Msa0933530:intron 30.0%
CTAAAGATGAATATGCTAGA+AGG - chr6_3:2011352-2011371 Msa0933530:CDS 30.0%
TCACTAATATTCATCAATGG+AGG + chr6_3:2011508-2011527 None:intergenic 30.0%
!!! ATAAAAACCCTTTAGGGTTT+TGG - chr6_3:2011527-2011546 Msa0933530:CDS 30.0%
AACATTAGCATCAACATGAT+GGG + chr6_3:2011719-2011738 None:intergenic 30.0%
TAACATTAGCATCAACATGA+TGG + chr6_3:2011720-2011739 None:intergenic 30.0%
GTTACCAATGATCTCAAAAT+CGG - chr6_3:2011736-2011755 Msa0933530:CDS 30.0%
!! AGATTTTGAAAAGGAAGAGT+AGG + chr6_3:2011859-2011878 None:intergenic 30.0%
TCCATTAAGTAGATGTTCAT+GGG + chr6_3:2011893-2011912 None:intergenic 30.0%
ATCCATTAAGTAGATGTTCA+TGG + chr6_3:2011894-2011913 None:intergenic 30.0%
ACATTGCAAAAGAGAAAGGA+TGG - chr6_3:2005902-2005921 Msa0933530:CDS 35.0%
!! TTTCAGGTTCAACATATCCT+TGG + chr6_3:2006009-2006028 None:intergenic 35.0%
GATATGTTGAACCTGAAACA+TGG - chr6_3:2006011-2006030 Msa0933530:CDS 35.0%
TCTTGAACATCATAGGTCTT+AGG + chr6_3:2006103-2006122 None:intergenic 35.0%
TTTACAAAGTGCGTAAAGAG+AGG - chr6_3:2006161-2006180 Msa0933530:CDS 35.0%
TTGTAAGATTCATCCCAAGT+TGG + chr6_3:2006202-2006221 None:intergenic 35.0%
! CTTTTGGATACGAACAATTG+AGG - chr6_3:2006224-2006243 Msa0933530:CDS 35.0%
!! GAGGTCATTTGTTAGGTTTT+TGG - chr6_3:2006243-2006262 Msa0933530:CDS 35.0%
! AATTTTCCCTTGAGACATGT+TGG + chr6_3:2006395-2006414 None:intergenic 35.0%
!! GAGCTTTGTTCCAATTGAAT+TGG + chr6_3:2006466-2006485 None:intergenic 35.0%
TTGTGAACTGGAAACCATAA+GGG + chr6_3:2006497-2006516 None:intergenic 35.0%
TTTGTGAACTGGAAACCATA+AGG + chr6_3:2006498-2006517 None:intergenic 35.0%
AATATGCTTGCAAGGGTAAT+AGG + chr6_3:2006524-2006543 None:intergenic 35.0%
TAGCATCAATATGCTTGCAA+GGG + chr6_3:2006531-2006550 None:intergenic 35.0%
TTAGCATCAATATGCTTGCA+AGG + chr6_3:2006532-2006551 None:intergenic 35.0%
! TTTGCAAGATTCTGAAAAGG+AGG + chr6_3:2006706-2006725 None:intergenic 35.0%
! AGGTTTGCAAGATTCTGAAA+AGG + chr6_3:2006709-2006728 None:intergenic 35.0%
! ATGGATGTCTAAAGCATTAC+AGG + chr6_3:2006817-2006836 None:intergenic 35.0%
!!! AGGGTGACGATTTTTTTTCT+TGG - chr6_3:2006921-2006940 Msa0933530:intron 35.0%
AGACCTTCATGAAAATGAGT+GGG + chr6_3:2007757-2007776 None:intergenic 35.0%
TAGACCTTCATGAAAATGAG+TGG + chr6_3:2007756-2007775 None:intergenic 35.0%
!!! CATGAAGGTCTATTTTAGCA+AGG - chr6_3:2007054-2007073 Msa0933530:intron 35.0%
!! ACTTTTTGAGCTTCTTGTTG+GGG + chr6_3:2007611-2007630 None:intergenic 35.0%
!!! CTACTTTTTGAGCTTCTTGT+TGG + chr6_3:2007613-2007632 None:intergenic 35.0%
!!! CATGAAGGTCTATTTTAGCA+AGG + chr6_3:2007054-2007073 None:intergenic 35.0%
TAGACCTTCATGAAAATGAG+TGG - chr6_3:2007756-2007775 Msa0933530:intron 35.0%
AGACCTTCATGAAAATGAGT+GGG - chr6_3:2007757-2007776 Msa0933530:intron 35.0%
AGTACATGCATATGGCAAAA+GGG + chr6_3:2007828-2007847 None:intergenic 35.0%
TAGTACATGCATATGGCAAA+AGG + chr6_3:2007829-2007848 None:intergenic 35.0%
TAACTAGACACAATGCCATA+TGG - chr6_3:2008048-2008067 Msa0933530:intron 35.0%
TGTGATGATACTGAACCATA+TGG + chr6_3:2008066-2008085 None:intergenic 35.0%
AGTTATACCCGACTTTCAAA+AGG - chr6_3:2008238-2008257 Msa0933530:intron 35.0%
! AACCTATTTTCACCCCTAAT+TGG - chr6_3:2008365-2008384 Msa0933530:intron 35.0%
TTCCAATTAGGGGTGAAAAT+AGG + chr6_3:2008370-2008389 None:intergenic 35.0%
! ACAGCTTTGATTCCAATTAG+GGG + chr6_3:2008380-2008399 None:intergenic 35.0%
ATCACGTGCCTATTGTAAAT+TGG - chr6_3:2008947-2008966 Msa0933530:intron 35.0%
TCACGTGCCTATTGTAAATT+GGG - chr6_3:2008948-2008967 Msa0933530:intron 35.0%
!! TTGAGTGTTGATACTATCTG+AGG - chr6_3:2009413-2009432 Msa0933530:intron 35.0%
! TATCTGAGGCTTTGATTTAG+AGG - chr6_3:2009427-2009446 Msa0933530:intron 35.0%
CTGCTTAGACAATAGAAAGA+TGG + chr6_3:2009571-2009590 None:intergenic 35.0%
! CTTCTTAAATTAGGGTGTCT+CGG - chr6_3:2009607-2009626 Msa0933530:intron 35.0%
TATCTTGTCAGTATTTGCGT+TGG + chr6_3:2009647-2009666 None:intergenic 35.0%
CTCCTAACTACTTGTTTAAG+GGG - chr6_3:2010372-2010391 Msa0933530:intron 35.0%
AACCCCTTAAACAAGTAGTT+AGG + chr6_3:2010377-2010396 None:intergenic 35.0%
TAGAGTTGTCAAGTTCTCAA+AGG + chr6_3:2010499-2010518 None:intergenic 35.0%
TATATTGTGTTCGCAGCAAA+TGG - chr6_3:2010889-2010908 Msa0933530:intron 35.0%
ATATTGTGTTCGCAGCAAAT+GGG - chr6_3:2010890-2010909 Msa0933530:intron 35.0%
ATCTGTGGAATTCATTCCAA+AGG - chr6_3:2010925-2010944 Msa0933530:intron 35.0%
TCATTCCAAAGGAGAAATCT+AGG - chr6_3:2010936-2010955 Msa0933530:intron 35.0%
ATCTTCCTAGATTTCTCCTT+TGG + chr6_3:2010944-2010963 None:intergenic 35.0%
AGCATCAACATCACAAAGAA+TGG + chr6_3:2011017-2011036 None:intergenic 35.0%
AGGTGCAAAGAATTCTTCAA+AGG - chr6_3:2006050-2006069 Msa0933530:CDS 35.0%
CTTGGATATGAGTCTAAGTA+GGG + chr6_3:2011439-2011458 None:intergenic 35.0%
ACTTGGATATGAGTCTAAGT+AGG + chr6_3:2011440-2011459 None:intergenic 35.0%
!!! TGTTGTTTTCCATGAGATTG+AGG + chr6_3:2011465-2011484 None:intergenic 35.0%
!!! CATACCGATTTTGAGATCAT+TGG + chr6_3:2011743-2011762 None:intergenic 35.0%
CAAAATCGGTATGAAGAAGA+AGG - chr6_3:2011750-2011769 Msa0933530:intron 35.0%
TTGGCACCATACTATTACAA+TGG - chr6_3:2011796-2011815 Msa0933530:intron 35.0%
TAAGTAGATGTTCATGGGAT+AGG + chr6_3:2011888-2011907 None:intergenic 35.0%
TCCCATGAACATCTACTTAA+TGG - chr6_3:2011889-2011908 Msa0933530:CDS 35.0%
AGCTCAAATGTTCAACTACA+TGG - chr6_3:2011936-2011955 Msa0933530:CDS 35.0%
CAAATGTTCAACTACATGGA+TGG - chr6_3:2011940-2011959 Msa0933530:CDS 35.0%
TTGTCTTTAGGCCATGTTTC+AGG + chr6_3:2006025-2006044 None:intergenic 40.0%
ATGGCCTAAAGACAAAAGAG+AGG - chr6_3:2006030-2006049 Msa0933530:CDS 40.0%
! TGCACCTCTCTTTTGTCTTT+AGG + chr6_3:2006037-2006056 None:intergenic 40.0%
! CCTGAATTTGAGGTCAAGTA+AGG + chr6_3:2006349-2006368 None:intergenic 40.0%
CCTTACTTGACCTCAAATTC+AGG - chr6_3:2006346-2006365 Msa0933530:CDS 40.0%
!! GAAGTTGGTACCTGAATTTG+AGG + chr6_3:2006359-2006378 None:intergenic 40.0%
GGTATGCATGAGATTGAAGT+TGG + chr6_3:2006374-2006393 None:intergenic 40.0%
ATGCATACCAACATGTCTCA+AGG - chr6_3:2006385-2006404 Msa0933530:CDS 40.0%
TGCATACCAACATGTCTCAA+GGG - chr6_3:2006386-2006405 Msa0933530:CDS 40.0%
TGAATTGGCCAAAACCCTAA+GGG + chr6_3:2006451-2006470 None:intergenic 40.0%
TTGAATTGGCCAAAACCCTA+AGG + chr6_3:2006452-2006471 None:intergenic 40.0%
!! AGGGTTTTGGCCAATTCAAT+TGG - chr6_3:2006453-2006472 Msa0933530:CDS 40.0%
! GTAATAGGAGCTTTGTGAAC+TGG + chr6_3:2006509-2006528 None:intergenic 40.0%
GCAAGCATATTGATGCTAAC+TGG - chr6_3:2006533-2006552 Msa0933530:CDS 40.0%
! AGATTCTGAAAAGGAGGAGT+AGG + chr6_3:2006700-2006719 None:intergenic 40.0%
CAACTGTTCAACTCCATGAA+TGG - chr6_3:2006781-2006800 Msa0933530:CDS 40.0%
! AGACCCACTCATTTTCATGA+AGG - chr6_3:2007039-2007058 Msa0933530:intron 40.0%
GGATGAAGAACAAAAGGTCA+CGG + chr6_3:2007230-2007249 None:intergenic 40.0%
GAACAAAAACACACCAACCA+AGG - chr6_3:2007527-2007546 Msa0933530:intron 40.0%
CAATTAAGGAAGAGAACCAG+CGG - chr6_3:2007584-2007603 Msa0933530:intron 40.0%
AATTAAGGAAGAGAACCAGC+GGG - chr6_3:2007585-2007604 Msa0933530:intron 40.0%
! AGACCCACTCATTTTCATGA+AGG + chr6_3:2007039-2007058 None:intergenic 40.0%
GTACATGCATATGGCAAAAG+GGG + chr6_3:2007827-2007846 None:intergenic 40.0%
! TCTCTCTCTCTGTCTCTTTT+TGG + chr6_3:2008512-2008531 None:intergenic 40.0%
TATTAACTGTGTCTGCGTGT+CGG - chr6_3:2009703-2009722 Msa0933530:intron 40.0%
GACTGCTTACCTATGAAACA+TGG + chr6_3:2009777-2009796 None:intergenic 40.0%
AGAGCAGCAAGACAAATGAA+AGG + chr6_3:2010710-2010729 None:intergenic 40.0%
! TGCACCTCTTTTGTGTCTTT+CGG + chr6_3:2011100-2011119 None:intergenic 40.0%
AAACTTCTCTTTGCGCACTT+TGG + chr6_3:2011230-2011249 None:intergenic 40.0%
CTCTTGGACATGAACAATTG+AGG - chr6_3:2011287-2011306 Msa0933530:intron 40.0%
! GAGGTTATTTGCTAGGATCT+TGG - chr6_3:2011306-2011325 Msa0933530:intron 40.0%
TATGCTAGAAGGAGATCTTC+TGG - chr6_3:2011363-2011382 Msa0933530:CDS 40.0%
ATGCTAGAAGGAGATCTTCT+GGG - chr6_3:2011364-2011383 Msa0933530:CDS 40.0%
TAAGTGGCCAAAACCCTAAA+GGG + chr6_3:2011537-2011556 None:intergenic 40.0%
ATAAGTGGCCAAAACCCTAA+AGG + chr6_3:2011538-2011557 None:intergenic 40.0%
!! AGGGTTTTGGCCACTTATAT+CGG - chr6_3:2011540-2011559 Msa0933530:intron 40.0%
GCAGTTGAAACCATATGAGA+GGG + chr6_3:2011580-2011599 None:intergenic 40.0%
TGCAGTTGAAACCATATGAG+AGG + chr6_3:2011581-2011600 None:intergenic 40.0%
CTTCTACCATGTAGAGTCTA+AGG - chr6_3:2011642-2011661 Msa0933530:CDS 40.0%
TGTTCAACTACATGGATGGA+AGG - chr6_3:2011944-2011963 Msa0933530:CDS 40.0%
GGGTCGTGGAAGAATATCTA+TGG - chr6_3:2005847-2005866 Msa0933530:CDS 45.0%
! TATCCTTGGCCTTCAAGGTT+GGG + chr6_3:2005995-2006014 None:intergenic 45.0%
! ATATCCTTGGCCTTCAAGGT+TGG + chr6_3:2005996-2006015 None:intergenic 45.0%
! CAACATATCCTTGGCCTTCA+AGG + chr6_3:2006000-2006019 None:intergenic 45.0%
GCGAAAAGATGAATCGCACA+AGG - chr6_3:2006303-2006322 Msa0933530:CDS 45.0%
AAGCTCTCAACCTTCCCTTA+TGG - chr6_3:2006480-2006499 Msa0933530:CDS 45.0%
GAACTGGAAACCATAAGGGA+AGG + chr6_3:2006493-2006512 None:intergenic 45.0%
AGGCTACTTCGTTCCATTCA+TGG + chr6_3:2006797-2006816 None:intergenic 45.0%
TTCTCTCAATTCACGCTCCT+TGG + chr6_3:2007547-2007566 None:intergenic 45.0%
CTCTATGCTCCCAACTTTGA+AGG - chr6_3:2011046-2011065 Msa0933530:CDS 45.0%
! TACCCTTGGCCTTCAAAGTT+GGG + chr6_3:2011058-2011077 None:intergenic 45.0%
! ATACCCTTGGCCTTCAAAGT+TGG + chr6_3:2011059-2011078 None:intergenic 45.0%
!! TTTCAGGTTCAGCATACCCT+TGG + chr6_3:2011072-2011091 None:intergenic 45.0%
GGTATGCTGAACCTGAAACA+TGG - chr6_3:2011074-2011093 Msa0933530:CDS 45.0%
ATGGCCGAAAGACACAAAAG+AGG - chr6_3:2011093-2011112 Msa0933530:CDS 45.0%
TCCAAGTAGCCTCAATCTCA+TGG - chr6_3:2011453-2011472 Msa0933530:CDS 45.0%
TCCATGAGATTGAGGCTACT+TGG + chr6_3:2011457-2011476 None:intergenic 45.0%
!! GGGTTTTGGCCACTTATATC+GGG - chr6_3:2011541-2011560 Msa0933530:intron 45.0%
! GAGCTTTGACCCGATATAAG+TGG + chr6_3:2011553-2011572 None:intergenic 45.0%
AAGCTCTCAACCCTCTCATA+TGG - chr6_3:2011567-2011586 Msa0933530:intron 45.0%
CTACCATGTAGAGTCTAAGG+CGG - chr6_3:2011645-2011664 Msa0933530:CDS 45.0%
! TACCATGTAGAGTCTAAGGC+GGG - chr6_3:2011646-2011665 Msa0933530:CDS 45.0%
GGAAGAGTAGGCATAGCAAT+GGG + chr6_3:2011847-2011866 None:intergenic 45.0%
AGGAAGAGTAGGCATAGCAA+TGG + chr6_3:2011848-2011867 None:intergenic 45.0%
!! GTTATATATATATATATATA+TGG - chr6_3:2007003-2007022 Msa0933530:intron 5.0%
!! TATATATATATATATATATG+GGG - chr6_3:2007005-2007024 Msa0933530:intron 5.0%
!! AAATAAAAATAATCATTTAA+AGG - chr6_3:2007642-2007661 Msa0933530:intron 5.0%
!! TAATATATATATATATATAG+GGG + chr6_3:2007797-2007816 None:intergenic 5.0%
! CTTCAAGGTTGGGAGCATAC+AGG + chr6_3:2005985-2006004 None:intergenic 50.0%
CTGTATGCTCCCAACCTTGA+AGG - chr6_3:2005983-2006002 Msa0933530:CDS 50.0%
TGATGCTAACTGGACCCATC+AGG - chr6_3:2006543-2006562 Msa0933530:CDS 50.0%
GGAGGAGTAGGCATAGCAAT+AGG + chr6_3:2006688-2006707 None:intergenic 50.0%
CTCAATTCACGCTCCTTGGT+TGG + chr6_3:2007543-2007562 None:intergenic 50.0%
ACTCTCCGGTCTCAAGAGAA+AGG - chr6_3:2008716-2008735 Msa0933530:intron 50.0%
CTCTCCGGTCTCAAGAGAAA+GGG - chr6_3:2008717-2008736 Msa0933530:intron 50.0%
TAGAGGAGAGACACAGTGTG+TGG - chr6_3:2009125-2009144 Msa0933530:intron 50.0%
AGAGGAGAGACACAGTGTGT+GGG - chr6_3:2009126-2009145 Msa0933530:intron 50.0%
! CTCCCAACTTTGAAGGCCAA+GGG - chr6_3:2011053-2011072 Msa0933530:CDS 50.0%
GTGTCTTTCGGCCATGTTTC+AGG + chr6_3:2011088-2011107 None:intergenic 50.0%
ATGGTAGAAGCTCTGTGCTC+GGG + chr6_3:2011632-2011651 None:intergenic 50.0%
CATGGTAGAAGCTCTGTGCT+CGG + chr6_3:2011633-2011652 None:intergenic 50.0%
TACCCGCCTTAGACTCTACA+TGG + chr6_3:2011651-2011670 None:intergenic 50.0%
CGGTCCCTTTCTCTTGAGAC+CGG + chr6_3:2008724-2008743 None:intergenic 55.0%
TGTTCGCAGCAAATGGGTCG+TGG - chr6_3:2010896-2010915 Msa0933530:intron 55.0%
!! GGGTCGTGGAAGAGTATCTG+TGG - chr6_3:2010910-2010929 Msa0933530:intron 55.0%
! GCTCCCAACTTTGAAGGCCA+AGG - chr6_3:2011052-2011071 Msa0933530:CDS 55.0%
GCTCGGGAAACAACAGGAGA+AGG + chr6_3:2011616-2011635 None:intergenic 55.0%
CTCTGTGCTCGGGAAACAAC+AGG + chr6_3:2011622-2011641 None:intergenic 55.0%
GCTCCCAACCTTGAAGGCCA+AGG - chr6_3:2005989-2006008 Msa0933530:CDS 60.0%
GGAGAGACACAGTGTGTGGG+AGG - chr6_3:2009129-2009148 Msa0933530:intron 60.0%
! CTGTGTCTGCGTGTCGGTGT+CGG - chr6_3:2009709-2009728 Msa0933530:intron 60.0%
AGCTTCTTGTTGGGGCCCGC+TGG + chr6_3:2007603-2007622 None:intergenic 65.0%
!! TGTCTGCGTGTCGGTGTCGG+TGG - chr6_3:2009712-2009731 Msa0933530:intron 65.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 2005842 2011972 2005842 ID=Msa0933530;Name=Msa0933530
chr6_3 mRNA 2005842 2011972 2005842 ID=Msa0933530-mRNA-1;Parent=Msa0933530;Name=Msa0933530-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|0|0|5|0|635
chr6_3 exon 2011799 2011972 2011799 ID=Msa0933530-mRNA-1:exon:841;Parent=Msa0933530-mRNA-1
chr6_3 exon 2011569 2011762 2011569 ID=Msa0933530-mRNA-1:exon:840;Parent=Msa0933530-mRNA-1
chr6_3 exon 2011313 2011556 2011313 ID=Msa0933530-mRNA-1:exon:839;Parent=Msa0933530-mRNA-1
chr6_3 exon 2011005 2011249 2011005 ID=Msa0933530-mRNA-1:exon:838;Parent=Msa0933530-mRNA-1
chr6_3 exon 2005842 2006892 2005842 ID=Msa0933530-mRNA-1:exon:837;Parent=Msa0933530-mRNA-1
chr6_3 CDS 2011799 2011972 2011799 ID=Msa0933530-mRNA-1:cds;Parent=Msa0933530-mRNA-1
chr6_3 CDS 2011569 2011762 2011569 ID=Msa0933530-mRNA-1:cds;Parent=Msa0933530-mRNA-1
chr6_3 CDS 2011313 2011556 2011313 ID=Msa0933530-mRNA-1:cds;Parent=Msa0933530-mRNA-1
chr6_3 CDS 2011005 2011249 2011005 ID=Msa0933530-mRNA-1:cds;Parent=Msa0933530-mRNA-1
chr6_3 CDS 2005842 2006892 2005842 ID=Msa0933530-mRNA-1:cds;Parent=Msa0933530-mRNA-1
Gene Sequence

>Msa0933530

AAAATGGGTCGTGGAAGAATATCTATGGAACTCATTCAAAAGGAGAGATCTAGAAAGATAACATTGCAAAAGAGAAAGGATGGTTTAATAAAGAAAGCAAAGGAATTTTCCATTCTTTGTGATGTTGATGTTTGTTTGATCCTGTATGCTCCCAACCTTGAAGGCCAAGGATATGTGCAAAGAATTCTTCAAAATTACTATGACACAACAATTGATAGGCGTCCTAAGACCTATGATGTTCAAGAATATTTTAAGGAGAGGATGAAAAAAGTTGAATTAGAGATTTACAAAGTGCGTAAAGAGAGGTTAAAGATGATGTATCCAACTTGGGATGAATCTTACAATTCTTTTGGATACGAACAATTGAGGTTTTTGGATTCTAAGCTTGACGCATGTGATCAAAAGATGAATATGCGAAAAGATGAATCGCACAAGGTCAATAACCTTATTAGTTCTCCTTACTTGACCTCAAATTCAGGTACCAACTTCAATCTCATGCATACCAACATGTCTCAAGGGAAAATTTACTCTCCATTGATGAATATTTGTGATAAAAATCCCTTAGGGTTTTGGCCAATTCAATTGGAACAAAGCTCTCAACCTTCCCTTATGGTTAATGCTAATGTTATGTATGATCCCAAAATCGATATGAAGAAGAAGGATGAAGCAGAAAATGATAAAAACTTGCCATCATACTATTACAATGGAAATGCAATGATAATGCAATCATATCCTATTGCTATGCCTACTCCTCCTTTTCAGAATCTTGCAAACCTATCCCATGAATATCTACTTTATGGATCCTATGATATGGATAGTATTCAAGCTCAACTGTTCAACTCCATGAATGGAACGAAAGTATCTGTGGAATTCATTCCAAAGGAGAAATCTAGGAAGATAGTATTGCAAAAAAGAAAGATTGGTTTGATGAAAAAAGTTGAGGAACTTTCCATTCTTTGTGATGTTGATGCTTGTGTGATTCTCTATGCTCCCAACTTTGAAGGCCAAGGGTATGCTGAACCTGAAACATGGCCGAAAGACACAAAAGAGGTGCAAAGAATTCTTCAAAGGTACTATAACACAACAATTGATAGGCGTCTTAAGACCTATGATGTTCAAGAATATTTTAACGAAAGGATGAAAAAAGTTGAATTTGAGATTTCCAAAGTGCGCAAAGAGAAGTTTAAGATGAAGTATCAAACTTGGAATGAATCTTTCAATTCTCTTGGACATGAACAATTGAGGTTATTTGCTAGGATCTTGGATTCTAAGCTTGATGCATGCAATCTAAAGATGAATATGCTAGAAGGAGATCTTCTGGGAAAATCAATAGCTCTTGAGACAAACAAGATTGATAATCTTAATAGTTCTCCCTACTTAGACTCATATCCAAGTAGCCTCAATCTCATGGAAAACAACATGTCTCAAGCACACATTTATCCTCCATTGATGAATATTAGTGATAAAAACCCTTTAGGGTTTTGGCCACTTATATCGGGTCAAAGCTCTCAACCCTCTCATATGGTTTCAACTGCACAAAGCTCTCAACCTTCTCCTGTTGTTTCCCGAGCACAGAGCTTCTACCATGTAGAGTCTAAGGCGGGTATATATGCACAGTCTTACCCTTGCAAGCAAATTGATTTTAATTGGACCCATCATGTTGATGCTAATGTTACCAATGATCTCAAAATCGGTATGAAGAAGAAGGATGAAGTTGAAAATGATAAAAACTTGGCACCATACTATTACAATGGAAATACAATGACAATGCAATCATATCCCATTGCTATGCCTACTCTTCCTTTTCAAAATCTTTCAAACCTATCCCATGAACATCTACTTAATGGATCCTATGATACAAATATTCTTCAAGCTCAAATGTTCAACTACATGGATGGAAGGAAGTAG
Protein sequence

>Msa0933530

KMGRGRISMELIQKERSRKITLQKRKDGLIKKAKEFSILCDVDVCLILYAPNLEGQGYVQRILQNYYDTTIDRRPKTYDVQEYFKERMKKVELEIYKVRKERLKMMYPTWDESYNSFGYEQLRFLDSKLDACDQKMNMRKDESHKVNNLISSPYLTSNSGTNFNLMHTNMSQGKIYSPLMNICDKNPLGFWPIQLEQSSQPSLMVNANVMYDPKIDMKKKDEAENDKNLPSYYYNGNAMIMQSYPIAMPTPPFQNLANLSHEYLLYGSYDMDSIQAQLFNSMNGTKVSVEFIPKEKSRKIVLQKRKIGLMKKVEELSILCDVDACVILYAPNFEGQGYAEPETWPKDTKEVQRILQRYYNTTIDRRLKTYDVQEYFNERMKKVEFEISKVRKEKFKMKYQTWNESFNSLGHEQLRLFARILDSKLDACNLKMNMLEGDLLGKSIALETNKIDNLNSSPYLDSYPSSLNLMENNMSQAHIYPPLMNISDKNPLGFWPLISGQSSQPSHMVSTAQSSQPSPVVSRAQSFYHVESKAGIYAQSYPCKQIDFNWTHHVDANVTNDLKIGMKKKDEVENDKNLAPYYYNGNTMTMQSYPIAMPTLPFQNLSNLSHEHLLNGSYDTNILQAQMFNYMDGRK*