AlfalfaGEDB | Msa0934680

M. sativa cultivar zhongmu-4 / Msa0934680

KEGG: -
GO: -
PFAM: PF03195.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0934680	XP_013450912.1	76.923	156	17	3	2	156	65	202	1.90e-73	229

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0934680	A0A072U5L7	76.923	156	17	3	2	156	65	202	9.08e-74	229

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TFs/TRs:

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Gene ID	Type	Classification
Msa0934680	TF	LOB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0934680	MtrunA17_Chr6g0452671	76.923	156	17	3	2	156	65	202	1.75e-77	229
Msa0934680	MtrunA17_Chr6g0452661	38.342	193	80	6	2	169	64	242	6.79e-26	99.4
Msa0934680	MtrunA17_Chr5g0439111	36.957	184	75	7	4	161	66	234	1.57e-21	87.8
Msa0934680	MtrunA17_Chr4g0055441	42.400	125	45	4	2	126	57	154	1.69e-19	80.5
Msa0934680	MtrunA17_Chr6g0452691	45.918	98	43	2	3	97	65	155	6.37e-18	77.0
Msa0934680	MtrunA17_Chr6g0449311	51.685	89	38	2	2	88	28	113	4.67e-14	65.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 27 sgRNAs with CRISPR-Local

Find 40 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTTTGAAACTAATTCTA+TGG	0.254760	6_3:+4643593	Msa0934680:CDS
ACAAGGGTTATACAATTGAT+CGG	0.617732	6_3:+4643621	Msa0934680:CDS
ACAATGATCAATTGATAAGT+AGG	0.452504	6_3:-4643484	None:intergenic
ACATCAAGACATCCACCAAC+AGG	0.415425	6_3:-4643348	None:intergenic
AGGGTTATACAATTGATCGG+TGG	0.726517	6_3:+4643624	Msa0934680:CDS
ATGCGTGCTCAATTCCCTGT+TGG	0.627603	6_3:+4643333	Msa0934680:CDS
ATTCCATTGTGAAGAATTAT+TGG	0.152750	6_3:+4643695	Msa0934680:CDS
ATTCTTACTAGATCATTGTA+AGG	0.440710	6_3:+4643428	Msa0934680:CDS
CAAAATTTGTACTACCATTA+AGG	0.279065	6_3:-4643719	None:intergenic
CAATGATCAATTGATAAGTA+GGG	0.590328	6_3:-4643483	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GGGATGTCATAATAAGAATT+CGG	-	chr6_3:4643537-4643556	None:intergenic	30.0%
GGTTAATAGTAACATTACGA+GGG	-	chr6_3:4643557-4643576	None:intergenic	30.0%
TAATTCTATGGATGCAACAA+GGG	+	chr6_3:4643605-4643624	Msa0934680:CDS	30.0%
ACAAGGGTTATACAATTGAT+CGG	+	chr6_3:4643621-4643640	Msa0934680:CDS	30.0%
GAAGAATTATTGGACCTTAA+TGG	+	chr6_3:4643705-4643724	Msa0934680:CDS	30.0%
GGGTTAATAGTAACATTACG+AGG	-	chr6_3:4643558-4643577	None:intergenic	35.0%
CTAATTCTATGGATGCAACA+AGG	+	chr6_3:4643604-4643623	Msa0934680:CDS	35.0%
GGAAGAAAAATCCAACTTGA+TGG	+	chr6_3:4643659-4643678	Msa0934680:CDS	35.0%
GGTCCAATAATTCTTCACAA+TGG	-	chr6_3:4643701-4643720	None:intergenic	35.0%
TGCTGATAAAGTAGTAACTG+AGG	+	chr6_3:4643770-4643789	Msa0934680:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_3	gene	4643294	4643999	4643294	ID=Msa0934680;Name=Msa0934680
chr6_3	mRNA	4643294	4643999	4643294	ID=Msa0934680-mRNA-1;Parent=Msa0934680;Name=Msa0934680-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0\|0\|0\|0.5\|1\|1\|2\|0\|178
chr6_3	exon	4643294	4643791	4643294	ID=Msa0934680-mRNA-1:exon:1450;Parent=Msa0934680-mRNA-1
chr6_3	exon	4643961	4643999	4643961	ID=Msa0934680-mRNA-1:exon:1451;Parent=Msa0934680-mRNA-1
chr6_3	CDS	4643294	4643791	4643294	ID=Msa0934680-mRNA-1:cds;Parent=Msa0934680-mRNA-1
chr6_3	CDS	4643961	4643999	4643961	ID=Msa0934680-mRNA-1:cds;Parent=Msa0934680-mRNA-1

Gene Sequence

>Msa0934680

ATGAATGAAGCAATGAAATCAATTATTTTTGAGTCAGATATGCGTGCTCAATTCCCTGTTGGTGGATGTCTTGATGTTATTATGATGTATTATGGTATGATCAAACACTCTGAGCAAGAACTAAATTCTGTTAAATTCTTACTAGATCATTGTAAGGTAAATTACCCTTTGCAACAACAAAATCTTGAACCCTACTTATCAATTGATCATTGTTCCGCTCCTTCTAGTAGCACTCGAGTTCCGAATTCTTATTATGACATCCCTCGTAATGTTACTATTAACCCAATTGATACCAAACAAAACTTTGAAACTAATTCTATGGATGCAACAAGGGTTATACAATTGATCGGTGGTGGCAATGCAATGGAAGAAAAATCCAACTTGATGGTAACACAAGGATTATTCCATTGTGAAGAATTATTGGACCTTAATGGTAGTACAAATTTTGATTTAAGGGAAGAGGAGAAAATATCAGATGCTGATAAAGTAGTAACTGAGGTTTATAATTGTATTCAATATTCTGCATTTGTTTCATGA

Protein sequence

>Msa0934680

MNEAMKSIIFESDMRAQFPVGGCLDVIMMYYGMIKHSEQELNSVKFLLDHCKVNYPLQQQNLEPYLSIDHCSAPSSSTRVPNSYYDIPRNVTINPIDTKQNFETNSMDATRVIQLIGGGNAMEEKSNLMVTQGLFHCEELLDLNGSTNFDLREEEKISDADKVVTEVYNCIQYSAFVS*