Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0936110 | XP_003607052.1 | 96.689 | 151 | 5 | 0 | 1 | 151 | 1 | 151 | 2.31e-104 | 305 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0936110 | sp|F4JZT3|ARR24_ARATH | 31.250 | 112 | 77 | 0 | 33 | 144 | 18 | 129 | 3.66e-16 | 73.6 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|---|---|
Msa0936110 | TR | Others |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0936110 | MtrunA17_Chr6g0451941 | 96.689 | 151 | 5 | 0 | 1 | 151 | 1 | 151 | 2.13e-108 | 305 |
Msa0936110 | MtrunA17_Chr7g0262351 | 33.628 | 113 | 74 | 1 | 25 | 137 | 14 | 125 | 1.94e-17 | 73.9 |
Msa0936110 | MtrunA17_Chr8g0364781 | 34.259 | 108 | 69 | 1 | 33 | 138 | 12 | 119 | 4.50e-15 | 67.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0936110 | AT5G26594.1 | 31.250 | 112 | 77 | 0 | 33 | 144 | 18 | 129 | 3.72e-17 | 73.6 |
Find 29 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTCTCTCGGGTCAAAGGTTT+TGG | 0.171590 | 6_3:-6738799 | None:intergenic |
TACCTCGGGTCCATTGATTA+TGG | 0.250485 | 6_3:-6738128 | None:intergenic |
AGCAATGCATTCATTGGATA+TGG | 0.328332 | 6_3:-6737953 | None:intergenic |
CATCATATGCTTGAATCAAT+AGG | 0.390164 | 6_3:+6738010 | Msa0936110:CDS |
TTTGATTTGCCCATAATCAA+TGG | 0.409566 | 6_3:+6738118 | Msa0936110:CDS |
GATCAAAATGTGCAAATGTT+TGG | 0.412226 | 6_3:+6738751 | Msa0936110:CDS |
CACTATGTGCAGGCTCTGTT+CGG | 0.424190 | 6_3:-6738036 | None:intergenic |
ACCTCGGGTCCATTGATTAT+GGG | 0.437317 | 6_3:-6738127 | None:intergenic |
TCTACTAGCAATGCATTCAT+TGG | 0.442738 | 6_3:-6737959 | None:intergenic |
GTGAGGCAGATGCGTGCAAT+GGG | 0.459873 | 6_3:+6738688 | Msa0936110:CDS |
CATATGATGCTCTAAGCGTC+TGG | 0.510351 | 6_3:-6737996 | None:intergenic |
TGATGAACACAAAACTCTCT+CGG | 0.519844 | 6_3:-6738813 | None:intergenic |
ACAAAACTCTCTCGGGTCAA+AGG | 0.520328 | 6_3:-6738805 | None:intergenic |
ATGAATGCATTGCTAGTAGA+TGG | 0.520529 | 6_3:+6737962 | Msa0936110:CDS |
GATGAACACAAAACTCTCTC+GGG | 0.532140 | 6_3:-6738812 | None:intergenic |
GGGATACAGACCAAGGTGGT+TGG | 0.534297 | 6_3:+6738709 | Msa0936110:CDS |
GCTTCTTGAGCACTATGTGC+AGG | 0.556886 | 6_3:-6738046 | None:intergenic |
AAGTTGCAATCAACAATGGA+TGG | 0.566106 | 6_3:+6737851 | None:intergenic |
GGTGAGGCAGATGCGTGCAA+TGG | 0.598157 | 6_3:+6738687 | Msa0936110:CDS |
TGTTAACATTCCAACCACCT+TGG | 0.598528 | 6_3:-6738719 | None:intergenic |
AACAATGGATGGAGGAACCA+CGG | 0.600766 | 6_3:+6737862 | None:intergenic |
ATCTGCATTAGTTTCACATG+CGG | 0.612322 | 6_3:-6738849 | None:intergenic |
ACAATGGATGGAGGAACCAC+GGG | 0.635016 | 6_3:+6737863 | None:intergenic |
GCCCATAATCAATGGACCCG+AGG | 0.655096 | 6_3:+6738126 | Msa0936110:CDS |
GAGGAACCACGGGATATAAG+CGG | 0.658571 | 6_3:+6737873 | Msa0936110:CDS |
TTGCAATCAACAATGGATGG+AGG | 0.668830 | 6_3:+6737854 | None:intergenic |
TGCAATGGGGATACAGACCA+AGG | 0.690928 | 6_3:+6738702 | Msa0936110:CDS |
TGAGGCAGATGCGTGCAATG+GGG | 0.781176 | 6_3:+6738689 | Msa0936110:CDS |
AATGGGGATACAGACCAAGG+TGG | 0.794219 | 6_3:+6738705 | Msa0936110:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TAAATAAATTTTTGATACCT+CGG | - | chr6_3:6738146-6738165 | None:intergenic | 15.0% |
!!! | TAAATAAATTTTTGATACCT+CGG | - | chr6_3:6738146-6738165 | None:intergenic | 15.0% |
!!! | AAATAAATTTTTGATACCTC+GGG | - | chr6_3:6738145-6738164 | None:intergenic | 20.0% |
!!! | AAACTAGTTAGTTTAAAATG+TGG | - | chr6_3:6738202-6738221 | None:intergenic | 20.0% |
!! | AAGTTAATCTCATATTTAGA+CGG | + | chr6_3:6738248-6738267 | Msa0936110:intron | 20.0% |
!! | TTAAATTGACAACTCATTTA+TGG | - | chr6_3:6738597-6738616 | None:intergenic | 20.0% |
!!! | AAATAAATTTTTGATACCTC+GGG | - | chr6_3:6738145-6738164 | None:intergenic | 20.0% |
!!! | AAACTAGTTAGTTTAAAATG+TGG | - | chr6_3:6738202-6738221 | None:intergenic | 20.0% |
!! | AAGTTAATCTCATATTTAGA+CGG | + | chr6_3:6738248-6738267 | Msa0936110:intron | 20.0% |
!! | TTAAATTGACAACTCATTTA+TGG | - | chr6_3:6738597-6738616 | None:intergenic | 20.0% |
!!! | GGATCTATTTTGATCATATA+TGG | - | chr6_3:6738435-6738454 | None:intergenic | 25.0% |
!!! | TTCCTAATTACTTTTGTAGT+TGG | + | chr6_3:6738666-6738685 | Msa0936110:intron | 25.0% |
!!! | GGATCTATTTTGATCATATA+TGG | - | chr6_3:6738435-6738454 | None:intergenic | 25.0% |
!!! | TTCCTAATTACTTTTGTAGT+TGG | + | chr6_3:6738666-6738685 | Msa0936110:intron | 25.0% |
CATCATATGCTTGAATCAAT+AGG | + | chr6_3:6738010-6738029 | Msa0936110:CDS | 30.0% | |
!! | TTTGATTTGCCCATAATCAA+TGG | + | chr6_3:6738118-6738137 | Msa0936110:CDS | 30.0% |
TTAATCTCATATTTAGACGG+TGG | + | chr6_3:6738251-6738270 | Msa0936110:intron | 30.0% | |
TAATCTCATATTTAGACGGT+GGG | + | chr6_3:6738252-6738271 | Msa0936110:intron | 30.0% | |
TGAGATGAATTCTTATCAAC+TGG | + | chr6_3:6738378-6738397 | Msa0936110:intron | 30.0% | |
!!! | TCAACTGGACTATTTTTTGT+TGG | + | chr6_3:6738393-6738412 | Msa0936110:intron | 30.0% |
ATCCTTTGTCATCAACTTTA+TGG | + | chr6_3:6738451-6738470 | Msa0936110:intron | 30.0% | |
!! | TACCATAAAGTTGATGACAA+AGG | - | chr6_3:6738456-6738475 | None:intergenic | 30.0% |
ATTTATGGACTTGGATTTGA+CGG | - | chr6_3:6738582-6738601 | None:intergenic | 30.0% | |
CACCAACTACAAAAGTAATT+AGG | - | chr6_3:6738671-6738690 | None:intergenic | 30.0% | |
!! | AATTACTTTTGTAGTTGGTG+AGG | + | chr6_3:6738671-6738690 | Msa0936110:intron | 30.0% |
GATCAAAATGTGCAAATGTT+TGG | + | chr6_3:6738751-6738770 | Msa0936110:CDS | 30.0% | |
CATCATATGCTTGAATCAAT+AGG | + | chr6_3:6738010-6738029 | Msa0936110:CDS | 30.0% | |
!! | TTTGATTTGCCCATAATCAA+TGG | + | chr6_3:6738118-6738137 | Msa0936110:CDS | 30.0% |
TTAATCTCATATTTAGACGG+TGG | + | chr6_3:6738251-6738270 | Msa0936110:intron | 30.0% | |
TAATCTCATATTTAGACGGT+GGG | + | chr6_3:6738252-6738271 | Msa0936110:intron | 30.0% | |
TGAGATGAATTCTTATCAAC+TGG | + | chr6_3:6738378-6738397 | Msa0936110:intron | 30.0% | |
!!! | TCAACTGGACTATTTTTTGT+TGG | + | chr6_3:6738393-6738412 | Msa0936110:intron | 30.0% |
ATCCTTTGTCATCAACTTTA+TGG | + | chr6_3:6738451-6738470 | Msa0936110:intron | 30.0% | |
!! | TACCATAAAGTTGATGACAA+AGG | - | chr6_3:6738456-6738475 | None:intergenic | 30.0% |
ATTTATGGACTTGGATTTGA+CGG | - | chr6_3:6738582-6738601 | None:intergenic | 30.0% | |
CACCAACTACAAAAGTAATT+AGG | - | chr6_3:6738671-6738690 | None:intergenic | 30.0% | |
!! | AATTACTTTTGTAGTTGGTG+AGG | + | chr6_3:6738671-6738690 | Msa0936110:intron | 30.0% |
GATCAAAATGTGCAAATGTT+TGG | + | chr6_3:6738751-6738770 | Msa0936110:CDS | 30.0% | |
!!! | ATCCACATTTTTTTCTCCTC+TGG | - | chr6_3:6737908-6737927 | None:intergenic | 35.0% |
AGCAATGCATTCATTGGATA+TGG | - | chr6_3:6737956-6737975 | None:intergenic | 35.0% | |
TCTACTAGCAATGCATTCAT+TGG | - | chr6_3:6737962-6737981 | None:intergenic | 35.0% | |
ATGAATGCATTGCTAGTAGA+TGG | + | chr6_3:6737962-6737981 | Msa0936110:CDS | 35.0% | |
TCTCACGTATTTCTTTGTTC+TGG | - | chr6_3:6738290-6738309 | None:intergenic | 35.0% | |
TGAGACTCATATTTAGACAC+TGG | + | chr6_3:6738305-6738324 | Msa0936110:intron | 35.0% | |
TATCTCATAGCTGAACTATC+TGG | - | chr6_3:6738488-6738507 | None:intergenic | 35.0% | |
AATCAAACAACCTCACTTGA+TGG | + | chr6_3:6738526-6738545 | Msa0936110:intron | 35.0% | |
TGACAACTCATTTATGGACT+TGG | - | chr6_3:6738591-6738610 | None:intergenic | 35.0% | |
TGATGAACACAAAACTCTCT+CGG | - | chr6_3:6738816-6738835 | None:intergenic | 35.0% | |
!! | AGAGTTTTGTGTTCATCACT+GGG | + | chr6_3:6738818-6738837 | Msa0936110:CDS | 35.0% |
!!! | ATCCACATTTTTTTCTCCTC+TGG | - | chr6_3:6737908-6737927 | None:intergenic | 35.0% |
AGCAATGCATTCATTGGATA+TGG | - | chr6_3:6737956-6737975 | None:intergenic | 35.0% | |
TCTACTAGCAATGCATTCAT+TGG | - | chr6_3:6737962-6737981 | None:intergenic | 35.0% | |
ATGAATGCATTGCTAGTAGA+TGG | + | chr6_3:6737962-6737981 | Msa0936110:CDS | 35.0% | |
TCTCACGTATTTCTTTGTTC+TGG | - | chr6_3:6738290-6738309 | None:intergenic | 35.0% | |
TGAGACTCATATTTAGACAC+TGG | + | chr6_3:6738305-6738324 | Msa0936110:intron | 35.0% | |
TATCTCATAGCTGAACTATC+TGG | - | chr6_3:6738488-6738507 | None:intergenic | 35.0% | |
AATCAAACAACCTCACTTGA+TGG | + | chr6_3:6738526-6738545 | Msa0936110:intron | 35.0% | |
TGACAACTCATTTATGGACT+TGG | - | chr6_3:6738591-6738610 | None:intergenic | 35.0% | |
TGATGAACACAAAACTCTCT+CGG | - | chr6_3:6738816-6738835 | None:intergenic | 35.0% | |
!! | AGAGTTTTGTGTTCATCACT+GGG | + | chr6_3:6738818-6738837 | Msa0936110:CDS | 35.0% |
AGCCAGAGGAGAAAAAAATG+TGG | + | chr6_3:6737903-6737922 | Msa0936110:CDS | 40.0% | |
! | GCGATGCAAATTTTGTTGAC+TGG | + | chr6_3:6738067-6738086 | Msa0936110:CDS | 40.0% |
ATATTTAGACGGTGGGTCTT+TGG | + | chr6_3:6738259-6738278 | Msa0936110:intron | 40.0% | |
TATTTAGACGGTGGGTCTTT+GGG | + | chr6_3:6738260-6738279 | Msa0936110:intron | 40.0% | |
GACTCATATTTAGACACTGG+CGG | + | chr6_3:6738308-6738327 | Msa0936110:intron | 40.0% | |
TGTTAACATTCCAACCACCT+TGG | - | chr6_3:6738722-6738741 | None:intergenic | 40.0% | |
GATGAACACAAAACTCTCTC+GGG | - | chr6_3:6738815-6738834 | None:intergenic | 40.0% | |
!! | GAGAGTTTTGTGTTCATCAC+TGG | + | chr6_3:6738817-6738836 | Msa0936110:CDS | 40.0% |
AGCCAGAGGAGAAAAAAATG+TGG | + | chr6_3:6737903-6737922 | Msa0936110:CDS | 40.0% | |
! | GCGATGCAAATTTTGTTGAC+TGG | + | chr6_3:6738067-6738086 | Msa0936110:CDS | 40.0% |
ATATTTAGACGGTGGGTCTT+TGG | + | chr6_3:6738259-6738278 | Msa0936110:intron | 40.0% | |
TATTTAGACGGTGGGTCTTT+GGG | + | chr6_3:6738260-6738279 | Msa0936110:intron | 40.0% | |
GACTCATATTTAGACACTGG+CGG | + | chr6_3:6738308-6738327 | Msa0936110:intron | 40.0% | |
TGTTAACATTCCAACCACCT+TGG | - | chr6_3:6738722-6738741 | None:intergenic | 40.0% | |
GATGAACACAAAACTCTCTC+GGG | - | chr6_3:6738815-6738834 | None:intergenic | 40.0% | |
!! | GAGAGTTTTGTGTTCATCAC+TGG | + | chr6_3:6738817-6738836 | Msa0936110:CDS | 40.0% |
!! | TTTTTGCCGCTTATATCCCG+TGG | - | chr6_3:6737882-6737901 | None:intergenic | 45.0% |
TAAGCGGCAAAAAAAGCCAG+AGG | + | chr6_3:6737889-6737908 | Msa0936110:CDS | 45.0% | |
! | CATATGATGCTCTAAGCGTC+TGG | - | chr6_3:6737999-6738018 | None:intergenic | 45.0% |
! | ACCTCGGGTCCATTGATTAT+GGG | - | chr6_3:6738130-6738149 | None:intergenic | 45.0% |
! | TACCTCGGGTCCATTGATTA+TGG | - | chr6_3:6738131-6738150 | None:intergenic | 45.0% |
GGTATCCTCATACTGACGAT+GGG | + | chr6_3:6738329-6738348 | Msa0936110:intron | 45.0% | |
TGAAACCCATCGTCAGTATG+AGG | - | chr6_3:6738337-6738356 | None:intergenic | 45.0% | |
! | CAAGTTGACTCCATCAAGTG+AGG | - | chr6_3:6738539-6738558 | None:intergenic | 45.0% |
! | TCTCTCGGGTCAAAGGTTTT+GGG | - | chr6_3:6738801-6738820 | None:intergenic | 45.0% |
ACAAAACTCTCTCGGGTCAA+AGG | - | chr6_3:6738808-6738827 | None:intergenic | 45.0% | |
!! | TTTTTGCCGCTTATATCCCG+TGG | - | chr6_3:6737882-6737901 | None:intergenic | 45.0% |
TAAGCGGCAAAAAAAGCCAG+AGG | + | chr6_3:6737889-6737908 | Msa0936110:CDS | 45.0% | |
! | CATATGATGCTCTAAGCGTC+TGG | - | chr6_3:6737999-6738018 | None:intergenic | 45.0% |
! | ACCTCGGGTCCATTGATTAT+GGG | - | chr6_3:6738130-6738149 | None:intergenic | 45.0% |
! | TACCTCGGGTCCATTGATTA+TGG | - | chr6_3:6738131-6738150 | None:intergenic | 45.0% |
GGTATCCTCATACTGACGAT+GGG | + | chr6_3:6738329-6738348 | Msa0936110:intron | 45.0% | |
TGAAACCCATCGTCAGTATG+AGG | - | chr6_3:6738337-6738356 | None:intergenic | 45.0% | |
! | CAAGTTGACTCCATCAAGTG+AGG | - | chr6_3:6738539-6738558 | None:intergenic | 45.0% |
! | TCTCTCGGGTCAAAGGTTTT+GGG | - | chr6_3:6738801-6738820 | None:intergenic | 45.0% |
ACAAAACTCTCTCGGGTCAA+AGG | - | chr6_3:6738808-6738827 | None:intergenic | 45.0% | |
GAGGAACCACGGGATATAAG+CGG | + | chr6_3:6737873-6737892 | Msa0936110:CDS | 50.0% | |
CACTATGTGCAGGCTCTGTT+CGG | - | chr6_3:6738039-6738058 | None:intergenic | 50.0% | |
GCTTCTTGAGCACTATGTGC+AGG | - | chr6_3:6738049-6738068 | None:intergenic | 50.0% | |
CGGTATCCTCATACTGACGA+TGG | + | chr6_3:6738328-6738347 | Msa0936110:intron | 50.0% | |
TGCAATGGGGATACAGACCA+AGG | + | chr6_3:6738702-6738721 | Msa0936110:CDS | 50.0% | |
AATGGGGATACAGACCAAGG+TGG | + | chr6_3:6738705-6738724 | Msa0936110:CDS | 50.0% | |
! | CTCTCGGGTCAAAGGTTTTG+GGG | - | chr6_3:6738800-6738819 | None:intergenic | 50.0% |
! | CTCTCTCGGGTCAAAGGTTT+TGG | - | chr6_3:6738802-6738821 | None:intergenic | 50.0% |
GAGGAACCACGGGATATAAG+CGG | + | chr6_3:6737873-6737892 | Msa0936110:CDS | 50.0% | |
CACTATGTGCAGGCTCTGTT+CGG | - | chr6_3:6738039-6738058 | None:intergenic | 50.0% | |
GCTTCTTGAGCACTATGTGC+AGG | - | chr6_3:6738049-6738068 | None:intergenic | 50.0% | |
CGGTATCCTCATACTGACGA+TGG | + | chr6_3:6738328-6738347 | Msa0936110:intron | 50.0% | |
TGCAATGGGGATACAGACCA+AGG | + | chr6_3:6738702-6738721 | Msa0936110:CDS | 50.0% | |
AATGGGGATACAGACCAAGG+TGG | + | chr6_3:6738705-6738724 | Msa0936110:CDS | 50.0% | |
! | CTCTCGGGTCAAAGGTTTTG+GGG | - | chr6_3:6738800-6738819 | None:intergenic | 50.0% |
! | CTCTCTCGGGTCAAAGGTTT+TGG | - | chr6_3:6738802-6738821 | None:intergenic | 50.0% |
GCCCATAATCAATGGACCCG+AGG | + | chr6_3:6738126-6738145 | Msa0936110:CDS | 55.0% | |
GTGAGGCAGATGCGTGCAAT+GGG | + | chr6_3:6738688-6738707 | Msa0936110:CDS | 55.0% | |
TGAGGCAGATGCGTGCAATG+GGG | + | chr6_3:6738689-6738708 | Msa0936110:CDS | 55.0% | |
GGGATACAGACCAAGGTGGT+TGG | + | chr6_3:6738709-6738728 | Msa0936110:CDS | 55.0% | |
!!! | GGTCAAAGGTTTTGGGGTGC+TGG | - | chr6_3:6738794-6738813 | None:intergenic | 55.0% |
GCCCATAATCAATGGACCCG+AGG | + | chr6_3:6738126-6738145 | Msa0936110:CDS | 55.0% | |
GTGAGGCAGATGCGTGCAAT+GGG | + | chr6_3:6738688-6738707 | Msa0936110:CDS | 55.0% | |
TGAGGCAGATGCGTGCAATG+GGG | + | chr6_3:6738689-6738708 | Msa0936110:CDS | 55.0% | |
GGGATACAGACCAAGGTGGT+TGG | + | chr6_3:6738709-6738728 | Msa0936110:CDS | 55.0% | |
!!! | GGTCAAAGGTTTTGGGGTGC+TGG | - | chr6_3:6738794-6738813 | None:intergenic | 55.0% |
GGTGAGGCAGATGCGTGCAA+TGG | + | chr6_3:6738687-6738706 | Msa0936110:CDS | 60.0% | |
GGTGAGGCAGATGCGTGCAA+TGG | + | chr6_3:6738687-6738706 | Msa0936110:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6_3 | gene | 6737866 | 6738858 | 6737866 | ID=Msa0936110;Name=Msa0936110 |
chr6_3 | mRNA | 6737866 | 6738858 | 6737866 | ID=Msa0936110-mRNA-1;Parent=Msa0936110;Name=Msa0936110-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|151 |
chr6_3 | exon | 6737866 | 6738147 | 6737866 | ID=Msa0936110-mRNA-1:exon:2135;Parent=Msa0936110-mRNA-1 |
chr6_3 | exon | 6738685 | 6738858 | 6738685 | ID=Msa0936110-mRNA-1:exon:2136;Parent=Msa0936110-mRNA-1 |
chr6_3 | CDS | 6737866 | 6738147 | 6737866 | ID=Msa0936110-mRNA-1:cds;Parent=Msa0936110-mRNA-1 |
chr6_3 | CDS | 6738685 | 6738858 | 6738685 | ID=Msa0936110-mRNA-1:cds;Parent=Msa0936110-mRNA-1 |
Gene Sequence |
Protein sequence |