Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0936320 | sp|Q9LQZ7|BBX21_ARATH | 42.012 | 338 | 124 | 10 | 1 | 273 | 1 | 331 | 8.49e-71 | 224 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0936320 | B7FII1 | 96.703 | 273 | 9 | 0 | 1 | 273 | 1 | 273 | 0.0 | 552 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0936320 | TF | DBB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0936320 | MtrunA17_Chr1g0155811 | 96.703 | 273 | 9 | 0 | 1 | 273 | 1 | 273 | 0.0 | 552 |
| Msa0936320 | MtrunA17_Chr3g0142221 | 46.494 | 271 | 84 | 8 | 1 | 261 | 1 | 220 | 3.78e-66 | 205 |
| Msa0936320 | MtrunA17_Chr4g0035651 | 47.005 | 217 | 102 | 4 | 1 | 212 | 1 | 209 | 7.07e-62 | 194 |
| Msa0936320 | MtrunA17_Chr3g0145061 | 49.485 | 194 | 87 | 3 | 1 | 183 | 1 | 194 | 1.18e-59 | 189 |
| Msa0936320 | MtrunA17_Chr4g0033641 | 35.273 | 275 | 129 | 8 | 1 | 261 | 1 | 240 | 2.97e-41 | 142 |
| Msa0936320 | MtrunA17_Chr2g0329511 | 38.636 | 220 | 109 | 5 | 1 | 215 | 1 | 199 | 1.68e-38 | 135 |
| Msa0936320 | MtrunA17_Chr2g0314671 | 40.206 | 194 | 90 | 5 | 1 | 171 | 1 | 191 | 2.00e-37 | 134 |
| Msa0936320 | MtrunA17_Chr5g0405151 | 33.918 | 171 | 99 | 4 | 1 | 161 | 1 | 167 | 3.07e-23 | 93.6 |
| Msa0936320 | MtrunA17_Chr1g0150471 | 45.361 | 97 | 43 | 1 | 5 | 101 | 6 | 92 | 5.53e-23 | 95.9 |
| Msa0936320 | MtrunA17_Chr4g0072871 | 44.086 | 93 | 42 | 1 | 5 | 97 | 22 | 104 | 2.60e-20 | 89.4 |
| Msa0936320 | MtrunA17_Chr3g0136701 | 42.268 | 97 | 46 | 1 | 5 | 101 | 6 | 92 | 2.22e-18 | 82.8 |
| Msa0936320 | MtrunA17_Chr7g0220721 | 40.860 | 93 | 45 | 1 | 5 | 97 | 26 | 108 | 8.58e-18 | 82.4 |
| Msa0936320 | MtrunA17_Chr7g0268691 | 35.714 | 98 | 52 | 2 | 5 | 102 | 20 | 106 | 2.46e-13 | 69.3 |
| Msa0936320 | MtrunA17_Chr5g0429341 | 31.959 | 97 | 56 | 1 | 1 | 97 | 1 | 87 | 7.31e-13 | 68.2 |
| Msa0936320 | MtrunA17_Chr3g0120711 | 32.990 | 97 | 54 | 2 | 1 | 97 | 1 | 86 | 3.01e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0936320 | AT1G75540.1 | 42.012 | 338 | 124 | 10 | 1 | 273 | 1 | 331 | 8.63e-72 | 224 |
| Msa0936320 | AT4G39070.1 | 48.768 | 203 | 77 | 3 | 1 | 176 | 1 | 203 | 2.42e-53 | 174 |
| Msa0936320 | AT1G06040.1 | 36.691 | 278 | 129 | 9 | 1 | 261 | 1 | 248 | 4.05e-43 | 147 |
| Msa0936320 | AT1G06040.2 | 41.935 | 186 | 76 | 4 | 1 | 177 | 1 | 163 | 2.88e-40 | 138 |
| Msa0936320 | AT4G10240.1 | 43.125 | 160 | 78 | 3 | 1 | 155 | 1 | 152 | 8.45e-37 | 128 |
| Msa0936320 | AT2G31380.1 | 34.201 | 269 | 136 | 8 | 1 | 260 | 1 | 237 | 4.44e-36 | 129 |
| Msa0936320 | AT1G78600.1 | 45.890 | 146 | 74 | 3 | 1 | 146 | 1 | 141 | 5.72e-36 | 130 |
| Msa0936320 | AT1G78600.2 | 41.520 | 171 | 94 | 4 | 1 | 170 | 1 | 166 | 8.56e-36 | 130 |
| Msa0936320 | AT4G38960.1 | 45.714 | 105 | 53 | 2 | 1 | 105 | 1 | 101 | 9.11e-23 | 92.8 |
| Msa0936320 | AT4G38960.6 | 45.714 | 105 | 53 | 2 | 1 | 105 | 1 | 101 | 9.11e-23 | 92.8 |
| Msa0936320 | AT2G24790.1 | 42.857 | 112 | 54 | 1 | 5 | 116 | 8 | 109 | 1.18e-22 | 95.1 |
| Msa0936320 | AT2G24790.2 | 42.857 | 112 | 54 | 1 | 5 | 116 | 8 | 109 | 1.51e-22 | 93.2 |
| Msa0936320 | AT2G21320.1 | 34.146 | 164 | 89 | 3 | 1 | 149 | 1 | 160 | 3.02e-22 | 90.9 |
| Msa0936320 | AT5G24930.1 | 42.268 | 97 | 46 | 1 | 5 | 101 | 6 | 92 | 2.70e-20 | 89.7 |
| Msa0936320 | AT3G02380.1 | 38.596 | 114 | 58 | 2 | 5 | 118 | 16 | 117 | 4.30e-18 | 83.2 |
| Msa0936320 | AT5G15840.1 | 36.134 | 119 | 64 | 2 | 5 | 123 | 20 | 126 | 8.64e-18 | 82.4 |
| Msa0936320 | AT5G15840.2 | 36.134 | 119 | 64 | 2 | 5 | 123 | 20 | 126 | 1.98e-17 | 80.5 |
| Msa0936320 | AT5G15850.1 | 38.333 | 120 | 59 | 2 | 5 | 124 | 12 | 116 | 3.39e-17 | 80.9 |
| Msa0936320 | AT5G57660.1 | 34.351 | 131 | 67 | 3 | 5 | 130 | 22 | 138 | 3.66e-15 | 74.7 |
| Msa0936320 | AT1G28050.1 | 35.644 | 101 | 55 | 1 | 2 | 102 | 6 | 96 | 1.09e-13 | 70.9 |
| Msa0936320 | AT2G33500.1 | 34.000 | 100 | 56 | 1 | 3 | 102 | 10 | 99 | 4.73e-13 | 68.9 |
| Msa0936320 | AT2G33500.2 | 34.000 | 100 | 56 | 1 | 3 | 102 | 10 | 99 | 5.08e-13 | 68.9 |
| Msa0936320 | AT2G47890.3 | 36.471 | 85 | 44 | 1 | 5 | 89 | 13 | 87 | 4.17e-12 | 65.5 |
| Msa0936320 | AT2G47890.2 | 36.471 | 85 | 44 | 1 | 5 | 89 | 13 | 87 | 4.80e-12 | 64.7 |
| Msa0936320 | AT2G47890.1 | 36.471 | 85 | 44 | 1 | 5 | 89 | 13 | 87 | 5.03e-12 | 65.5 |
| Msa0936320 | AT3G07650.3 | 33.721 | 86 | 47 | 1 | 1 | 86 | 1 | 76 | 3.39e-11 | 63.2 |
| Msa0936320 | AT3G07650.2 | 33.721 | 86 | 47 | 1 | 1 | 86 | 1 | 76 | 3.39e-11 | 63.2 |
| Msa0936320 | AT3G07650.4 | 33.721 | 86 | 47 | 1 | 1 | 86 | 1 | 76 | 3.39e-11 | 63.2 |
| Msa0936320 | AT3G07650.1 | 33.721 | 86 | 47 | 1 | 1 | 86 | 1 | 76 | 3.39e-11 | 63.2 |
| Msa0936320 | AT5G48250.1 | 33.721 | 86 | 47 | 1 | 1 | 86 | 1 | 76 | 7.69e-11 | 62.4 |
Find 58 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCTTTCCTAATAATAATA+TGG | 0.168130 | 6_3:+7006577 | Msa0936320:CDS |
| CAGATCCCCATATTATTATT+AGG | 0.251686 | 6_3:-7006584 | None:intergenic |
| TTCTTTCCTAATAATAATAT+GGG | 0.319425 | 6_3:+7006578 | Msa0936320:CDS |
| ATATCTTGTTCTCTTGGAAT+TGG | 0.322098 | 6_3:-7006774 | None:intergenic |
| GAGGGTGTTGTTTAGGAGTT+GGG | 0.330083 | 6_3:-7005714 | None:intergenic |
| AGAGGGTGTTGTTTAGGAGT+TGG | 0.337165 | 6_3:-7005715 | None:intergenic |
| TCGCAGAGAGGGTGTTGTTT+AGG | 0.344263 | 6_3:-7005721 | None:intergenic |
| CCATAGATATCTTGTTCTCT+TGG | 0.347739 | 6_3:-7006780 | None:intergenic |
| TACTCCTTCACCAACATCTA+TGG | 0.351518 | 6_3:+7006112 | Msa0936320:CDS |
| CTAATAATAATATGGGGATC+TGG | 0.357774 | 6_3:+7006585 | Msa0936320:CDS |
| CCAAGAGAACAAGATATCTA+TGG | 0.390568 | 6_3:+7006780 | Msa0936320:CDS |
| AAGAGCGAGACGGTGGTGTT+TGG | 0.393267 | 6_3:-7005686 | None:intergenic |
| GTTCTCTTGGAATTGGCAAC+AGG | 0.403208 | 6_3:-7006767 | None:intergenic |
| TTCATCTTCACAAATAATGA+TGG | 0.443338 | 6_3:+7006637 | Msa0936320:CDS |
| CCCTCTCTGCGATATTTGTC+AGG | 0.457199 | 6_3:+7005732 | Msa0936320:CDS |
| TGTTCCCTTTGCTTTCTCCA+AGG | 0.478253 | 6_3:+7006223 | Msa0936320:CDS |
| TAATAATAATATGGGGATCT+GGG | 0.485705 | 6_3:+7006586 | Msa0936320:CDS |
| CATGATAGGTTTCTTCTCAC+TGG | 0.500831 | 6_3:+7005978 | Msa0936320:CDS |
| GATACATAAGGCGGCTTCAT+CGG | 0.502006 | 6_3:-7005623 | None:intergenic |
| CTTCCTTCTTCCATAGATGT+TGG | 0.505484 | 6_3:-7006122 | None:intergenic |
| GTGTTTGGAAGCGAGTTTGT+TGG | 0.511969 | 6_3:-7005671 | None:intergenic |
| AACTTACACAGAAACATGAT+AGG | 0.518542 | 6_3:+7005964 | Msa0936320:CDS |
| TCATCTTCACAAATAATGAT+GGG | 0.520250 | 6_3:+7006638 | Msa0936320:CDS |
| GGTGATGAATTGTTTAATGC+TGG | 0.521388 | 6_3:+7006533 | Msa0936320:CDS |
| GAAGATGAATATAGAGAAGT+TGG | 0.523305 | 6_3:-7006623 | None:intergenic |
| AAAGCAGCATCAACAAATCA+AGG | 0.524782 | 6_3:+7006696 | Msa0936320:CDS |
| CAGAGTGAGACAACAAAGAA+GGG | 0.529375 | 6_3:+7006662 | Msa0936320:CDS |
| GCAGAGTGAGACAACAAAGA+AGG | 0.531335 | 6_3:+7006661 | Msa0936320:CDS |
| AAATCATCAACTTGCCAACC+AGG | 0.534307 | 6_3:-7006185 | None:intergenic |
| GCATCAACAAATCAAGGTTG+AGG | 0.540346 | 6_3:+7006702 | Msa0936320:CDS |
| GACTTGGTAGTAGCTGAAGA+AGG | 0.541974 | 6_3:-7006050 | None:intergenic |
| AGAGAAGTTGGTGGTGCTTG+AGG | 0.543527 | 6_3:-7006611 | None:intergenic |
| CATCAACAAATCAAGGTTGA+GGG | 0.544246 | 6_3:+7006703 | Msa0936320:CDS |
| GTGGTCACAGTCGATACATA+AGG | 0.545496 | 6_3:-7005635 | None:intergenic |
| TCACCAACATCTATGGAAGA+AGG | 0.545672 | 6_3:+7006119 | Msa0936320:CDS |
| GTTTGTTGGCGTGGTGGACA+CGG | 0.549454 | 6_3:-7005657 | None:intergenic |
| AAAACCTTGGAGAAAGCAAA+GGG | 0.550319 | 6_3:-7006227 | None:intergenic |
| AGAAGGAACATGATTTGACT+TGG | 0.555327 | 6_3:-7006066 | None:intergenic |
| TACTTGATTGAGACTCTACC+TGG | 0.562410 | 6_3:+7006167 | Msa0936320:CDS |
| GAAAACCTTGGAGAAAGCAA+AGG | 0.575554 | 6_3:-7006228 | None:intergenic |
| TGATTGAGACTCTACCTGGT+TGG | 0.594734 | 6_3:+7006171 | Msa0936320:CDS |
| ACATCTATGGAAGAAGGAAG+TGG | 0.599359 | 6_3:+7006125 | Msa0936320:CDS |
| TCTTCCATAGATGTTGGTGA+AGG | 0.607403 | 6_3:-7006116 | None:intergenic |
| TGGAAGCGAGTTTGTTGGCG+TGG | 0.613525 | 6_3:-7005666 | None:intergenic |
| CCTGACAAATATCGCAGAGA+GGG | 0.617757 | 6_3:-7005732 | None:intergenic |
| ACATAAGGCGGCTTCATCGG+CGG | 0.633059 | 6_3:-7005620 | None:intergenic |
| AAGCGAGTTTGTTGGCGTGG+TGG | 0.633769 | 6_3:-7005663 | None:intergenic |
| TCTTTCCTAATAATAATATG+GGG | 0.635035 | 6_3:+7006579 | Msa0936320:CDS |
| CATCTTCACAAATAATGATG+GGG | 0.650089 | 6_3:+7006639 | Msa0936320:CDS |
| TCTATGGAAGAAGGAAGTGG+TGG | 0.656402 | 6_3:+7006128 | Msa0936320:CDS |
| GATGAATATAGAGAAGTTGG+TGG | 0.658413 | 6_3:-7006620 | None:intergenic |
| AGAGTGAGACAACAAAGAAG+GGG | 0.664318 | 6_3:+7006663 | Msa0936320:CDS |
| TTGGCAACAGGACTAATCTG+TGG | 0.670590 | 6_3:-7006755 | None:intergenic |
| TTGGGTTATGAAGAGCGAGA+CGG | 0.678930 | 6_3:-7005696 | None:intergenic |
| GGTTATGAAGAGCGAGACGG+TGG | 0.682697 | 6_3:-7005693 | None:intergenic |
| ACCTGACAAATATCGCAGAG+AGG | 0.707817 | 6_3:-7005733 | None:intergenic |
| GTCACAGTCGATACATAAGG+CGG | 0.712524 | 6_3:-7005632 | None:intergenic |
| TGTTGGCGTGGTGGACACGG+TGG | 0.723732 | 6_3:-7005654 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCAATTATATTTAAACTT+AGG | - | chr6_3:7006476-7006495 | None:intergenic | 10.0% |
| !! | TAAGTTTAAATATAATTGAT+TGG | + | chr6_3:7006475-7006494 | Msa0936320:intron | 10.0% |
| !! | AATCAATTATATTTAAACTT+AGG | - | chr6_3:7006476-7006495 | None:intergenic | 10.0% |
| !! | TAAGTTTAAATATAATTGAT+TGG | + | chr6_3:7006475-7006494 | Msa0936320:intron | 10.0% |
| !! | ATTCTTTCCTAATAATAATA+TGG | + | chr6_3:7006577-7006596 | Msa0936320:CDS | 15.0% |
| !! | TTCTTTCCTAATAATAATAT+GGG | + | chr6_3:7006578-7006597 | Msa0936320:CDS | 15.0% |
| !! | ATTCTTTCCTAATAATAATA+TGG | + | chr6_3:7006577-7006596 | Msa0936320:CDS | 15.0% |
| !! | TTCTTTCCTAATAATAATAT+GGG | + | chr6_3:7006578-7006597 | Msa0936320:CDS | 15.0% |
| !! | ACAAAATATAAGAGAAAGTT+AGG | - | chr6_3:7005777-7005796 | None:intergenic | 20.0% |
| !! | TCTTTCCTAATAATAATATG+GGG | + | chr6_3:7006579-7006598 | Msa0936320:CDS | 20.0% |
| !! | ACAAAATATAAGAGAAAGTT+AGG | - | chr6_3:7005777-7005796 | None:intergenic | 20.0% |
| !! | TCTTTCCTAATAATAATATG+GGG | + | chr6_3:7006579-7006598 | Msa0936320:CDS | 20.0% |
| ! | TAATAATAATATGGGGATCT+GGG | + | chr6_3:7006586-7006605 | Msa0936320:CDS | 25.0% |
| ! | TTCATCTTCACAAATAATGA+TGG | + | chr6_3:7006637-7006656 | Msa0936320:CDS | 25.0% |
| ! | TCATCTTCACAAATAATGAT+GGG | + | chr6_3:7006638-7006657 | Msa0936320:CDS | 25.0% |
| ! | TAATAATAATATGGGGATCT+GGG | + | chr6_3:7006586-7006605 | Msa0936320:CDS | 25.0% |
| ! | TTCATCTTCACAAATAATGA+TGG | + | chr6_3:7006637-7006656 | Msa0936320:CDS | 25.0% |
| ! | TCATCTTCACAAATAATGAT+GGG | + | chr6_3:7006638-7006657 | Msa0936320:CDS | 25.0% |
| !!! | ATGTTGACTTTTTTTCCATG+TGG | + | chr6_3:7005856-7005875 | Msa0936320:intron | 30.0% |
| AACTTACACAGAAACATGAT+AGG | + | chr6_3:7005964-7005983 | Msa0936320:CDS | 30.0% | |
| ! | TTTTCAATCGAAGAAGAAGA+AGG | - | chr6_3:7006086-7006105 | None:intergenic | 30.0% |
| TAATATTGAGTAAGAGAGAG+AGG | - | chr6_3:7006264-7006283 | None:intergenic | 30.0% | |
| !! | TTGATTGGTTTGTTTGTGAT+TGG | + | chr6_3:7006490-7006509 | Msa0936320:intron | 30.0% |
| CAGATCCCCATATTATTATT+AGG | - | chr6_3:7006587-7006606 | None:intergenic | 30.0% | |
| CTAATAATAATATGGGGATC+TGG | + | chr6_3:7006585-7006604 | Msa0936320:CDS | 30.0% | |
| GAAGATGAATATAGAGAAGT+TGG | - | chr6_3:7006626-7006645 | None:intergenic | 30.0% | |
| CATCTTCACAAATAATGATG+GGG | + | chr6_3:7006639-7006658 | Msa0936320:CDS | 30.0% | |
| ATATCTTGTTCTCTTGGAAT+TGG | - | chr6_3:7006777-7006796 | None:intergenic | 30.0% | |
| !!! | ATGTTGACTTTTTTTCCATG+TGG | + | chr6_3:7005856-7005875 | Msa0936320:intron | 30.0% |
| AACTTACACAGAAACATGAT+AGG | + | chr6_3:7005964-7005983 | Msa0936320:CDS | 30.0% | |
| ! | TTTTCAATCGAAGAAGAAGA+AGG | - | chr6_3:7006086-7006105 | None:intergenic | 30.0% |
| TAATATTGAGTAAGAGAGAG+AGG | - | chr6_3:7006264-7006283 | None:intergenic | 30.0% | |
| !! | TTGATTGGTTTGTTTGTGAT+TGG | + | chr6_3:7006490-7006509 | Msa0936320:intron | 30.0% |
| CAGATCCCCATATTATTATT+AGG | - | chr6_3:7006587-7006606 | None:intergenic | 30.0% | |
| CTAATAATAATATGGGGATC+TGG | + | chr6_3:7006585-7006604 | Msa0936320:CDS | 30.0% | |
| GAAGATGAATATAGAGAAGT+TGG | - | chr6_3:7006626-7006645 | None:intergenic | 30.0% | |
| CATCTTCACAAATAATGATG+GGG | + | chr6_3:7006639-7006658 | Msa0936320:CDS | 30.0% | |
| ATATCTTGTTCTCTTGGAAT+TGG | - | chr6_3:7006777-7006796 | None:intergenic | 30.0% | |
| ! | TTTTGTTGCATACATCACAC+TGG | - | chr6_3:7005579-7005598 | None:intergenic | 35.0% |
| !!! | TGACTTTTTTTCCATGTGGT+AGG | + | chr6_3:7005860-7005879 | Msa0936320:intron | 35.0% |
| AGAAGGAACATGATTTGACT+TGG | - | chr6_3:7006069-7006088 | None:intergenic | 35.0% | |
| AAAACCTTGGAGAAAGCAAA+GGG | - | chr6_3:7006230-7006249 | None:intergenic | 35.0% | |
| GGTAGAAAATAGGAAAACCT+TGG | - | chr6_3:7006243-7006262 | None:intergenic | 35.0% | |
| AAGAGAGAGAGGTAGAAAAT+AGG | - | chr6_3:7006253-7006272 | None:intergenic | 35.0% | |
| CATAATCTACAAAGCTCTCT+GGG | + | chr6_3:7006419-7006438 | Msa0936320:intron | 35.0% | |
| ATAATCTACAAAGCTCTCTG+GGG | + | chr6_3:7006420-7006439 | Msa0936320:intron | 35.0% | |
| GGTGATGAATTGTTTAATGC+TGG | + | chr6_3:7006533-7006552 | Msa0936320:CDS | 35.0% | |
| GATGAATATAGAGAAGTTGG+TGG | - | chr6_3:7006623-7006642 | None:intergenic | 35.0% | |
| AAAGCAGCATCAACAAATCA+AGG | + | chr6_3:7006696-7006715 | Msa0936320:CDS | 35.0% | |
| CATCAACAAATCAAGGTTGA+GGG | + | chr6_3:7006703-7006722 | Msa0936320:CDS | 35.0% | |
| CCATAGATATCTTGTTCTCT+TGG | - | chr6_3:7006783-7006802 | None:intergenic | 35.0% | |
| CCAAGAGAACAAGATATCTA+TGG | + | chr6_3:7006780-7006799 | Msa0936320:CDS | 35.0% | |
| ! | TTTTGTTGCATACATCACAC+TGG | - | chr6_3:7005579-7005598 | None:intergenic | 35.0% |
| !!! | TGACTTTTTTTCCATGTGGT+AGG | + | chr6_3:7005860-7005879 | Msa0936320:intron | 35.0% |
| AGAAGGAACATGATTTGACT+TGG | - | chr6_3:7006069-7006088 | None:intergenic | 35.0% | |
| AAAACCTTGGAGAAAGCAAA+GGG | - | chr6_3:7006230-7006249 | None:intergenic | 35.0% | |
| GGTAGAAAATAGGAAAACCT+TGG | - | chr6_3:7006243-7006262 | None:intergenic | 35.0% | |
| AAGAGAGAGAGGTAGAAAAT+AGG | - | chr6_3:7006253-7006272 | None:intergenic | 35.0% | |
| CATAATCTACAAAGCTCTCT+GGG | + | chr6_3:7006419-7006438 | Msa0936320:intron | 35.0% | |
| ATAATCTACAAAGCTCTCTG+GGG | + | chr6_3:7006420-7006439 | Msa0936320:intron | 35.0% | |
| GGTGATGAATTGTTTAATGC+TGG | + | chr6_3:7006533-7006552 | Msa0936320:CDS | 35.0% | |
| GATGAATATAGAGAAGTTGG+TGG | - | chr6_3:7006623-7006642 | None:intergenic | 35.0% | |
| AAAGCAGCATCAACAAATCA+AGG | + | chr6_3:7006696-7006715 | Msa0936320:CDS | 35.0% | |
| CATCAACAAATCAAGGTTGA+GGG | + | chr6_3:7006703-7006722 | Msa0936320:CDS | 35.0% | |
| CCATAGATATCTTGTTCTCT+TGG | - | chr6_3:7006783-7006802 | None:intergenic | 35.0% | |
| CCAAGAGAACAAGATATCTA+TGG | + | chr6_3:7006780-7006799 | Msa0936320:CDS | 35.0% | |
| CATGATAGGTTTCTTCTCAC+TGG | + | chr6_3:7005978-7005997 | Msa0936320:CDS | 40.0% | |
| TACTCCTTCACCAACATCTA+TGG | + | chr6_3:7006112-7006131 | Msa0936320:CDS | 40.0% | |
| ! | TCTTCCATAGATGTTGGTGA+AGG | - | chr6_3:7006119-7006138 | None:intergenic | 40.0% |
| TCACCAACATCTATGGAAGA+AGG | + | chr6_3:7006119-7006138 | Msa0936320:CDS | 40.0% | |
| CTTCCTTCTTCCATAGATGT+TGG | - | chr6_3:7006125-7006144 | None:intergenic | 40.0% | |
| ACATCTATGGAAGAAGGAAG+TGG | + | chr6_3:7006125-7006144 | Msa0936320:CDS | 40.0% | |
| TACTTGATTGAGACTCTACC+TGG | + | chr6_3:7006167-7006186 | Msa0936320:CDS | 40.0% | |
| AAATCATCAACTTGCCAACC+AGG | - | chr6_3:7006188-7006207 | None:intergenic | 40.0% | |
| GAAAACCTTGGAGAAAGCAA+AGG | - | chr6_3:7006231-7006250 | None:intergenic | 40.0% | |
| AAATTCAGCTGATAGAGCCT+CGG | + | chr6_3:7006392-7006411 | Msa0936320:intron | 40.0% | |
| ! | CCAGAGAGCTTTGTAGATTA+TGG | - | chr6_3:7006421-7006440 | None:intergenic | 40.0% |
| CCATAATCTACAAAGCTCTC+TGG | + | chr6_3:7006418-7006437 | Msa0936320:intron | 40.0% | |
| ! | GGTTTGTTTGTGATTGGATC+TGG | + | chr6_3:7006496-7006515 | Msa0936320:intron | 40.0% |
| GATCTGGTGTATGAAATGCA+GGG | + | chr6_3:7006512-7006531 | Msa0936320:intron | 40.0% | |
| CAGAGTGAGACAACAAAGAA+GGG | + | chr6_3:7006662-7006681 | Msa0936320:CDS | 40.0% | |
| AGAGTGAGACAACAAAGAAG+GGG | + | chr6_3:7006663-7006682 | Msa0936320:CDS | 40.0% | |
| GCATCAACAAATCAAGGTTG+AGG | + | chr6_3:7006702-7006721 | Msa0936320:CDS | 40.0% | |
| CATGATAGGTTTCTTCTCAC+TGG | + | chr6_3:7005978-7005997 | Msa0936320:CDS | 40.0% | |
| TACTCCTTCACCAACATCTA+TGG | + | chr6_3:7006112-7006131 | Msa0936320:CDS | 40.0% | |
| ! | TCTTCCATAGATGTTGGTGA+AGG | - | chr6_3:7006119-7006138 | None:intergenic | 40.0% |
| TCACCAACATCTATGGAAGA+AGG | + | chr6_3:7006119-7006138 | Msa0936320:CDS | 40.0% | |
| CTTCCTTCTTCCATAGATGT+TGG | - | chr6_3:7006125-7006144 | None:intergenic | 40.0% | |
| ACATCTATGGAAGAAGGAAG+TGG | + | chr6_3:7006125-7006144 | Msa0936320:CDS | 40.0% | |
| TACTTGATTGAGACTCTACC+TGG | + | chr6_3:7006167-7006186 | Msa0936320:CDS | 40.0% | |
| AAATCATCAACTTGCCAACC+AGG | - | chr6_3:7006188-7006207 | None:intergenic | 40.0% | |
| GAAAACCTTGGAGAAAGCAA+AGG | - | chr6_3:7006231-7006250 | None:intergenic | 40.0% | |
| AAATTCAGCTGATAGAGCCT+CGG | + | chr6_3:7006392-7006411 | Msa0936320:intron | 40.0% | |
| ! | CCAGAGAGCTTTGTAGATTA+TGG | - | chr6_3:7006421-7006440 | None:intergenic | 40.0% |
| CCATAATCTACAAAGCTCTC+TGG | + | chr6_3:7006418-7006437 | Msa0936320:intron | 40.0% | |
| ! | GGTTTGTTTGTGATTGGATC+TGG | + | chr6_3:7006496-7006515 | Msa0936320:intron | 40.0% |
| GATCTGGTGTATGAAATGCA+GGG | + | chr6_3:7006512-7006531 | Msa0936320:intron | 40.0% | |
| CAGAGTGAGACAACAAAGAA+GGG | + | chr6_3:7006662-7006681 | Msa0936320:CDS | 40.0% | |
| AGAGTGAGACAACAAAGAAG+GGG | + | chr6_3:7006663-7006682 | Msa0936320:CDS | 40.0% | |
| GCATCAACAAATCAAGGTTG+AGG | + | chr6_3:7006702-7006721 | Msa0936320:CDS | 40.0% | |
| GATACATAAGGCGGCTTCAT+CGG | - | chr6_3:7005626-7005645 | None:intergenic | 45.0% | |
| GTCACAGTCGATACATAAGG+CGG | - | chr6_3:7005635-7005654 | None:intergenic | 45.0% | |
| GTGGTCACAGTCGATACATA+AGG | - | chr6_3:7005638-7005657 | None:intergenic | 45.0% | |
| GTGTTTGGAAGCGAGTTTGT+TGG | - | chr6_3:7005674-7005693 | None:intergenic | 45.0% | |
| TTGGGTTATGAAGAGCGAGA+CGG | - | chr6_3:7005699-7005718 | None:intergenic | 45.0% | |
| !! | GAGGGTGTTGTTTAGGAGTT+GGG | - | chr6_3:7005717-7005736 | None:intergenic | 45.0% |
| !! | AGAGGGTGTTGTTTAGGAGT+TGG | - | chr6_3:7005718-7005737 | None:intergenic | 45.0% |
| CCTGACAAATATCGCAGAGA+GGG | - | chr6_3:7005735-7005754 | None:intergenic | 45.0% | |
| ACCTGACAAATATCGCAGAG+AGG | - | chr6_3:7005736-7005755 | None:intergenic | 45.0% | |
| ! | GACTTGGTAGTAGCTGAAGA+AGG | - | chr6_3:7006053-7006072 | None:intergenic | 45.0% |
| TCTATGGAAGAAGGAAGTGG+TGG | + | chr6_3:7006128-7006147 | Msa0936320:CDS | 45.0% | |
| TGATTGAGACTCTACCTGGT+TGG | + | chr6_3:7006171-7006190 | Msa0936320:CDS | 45.0% | |
| TGTTCCCTTTGCTTTCTCCA+AGG | + | chr6_3:7006223-7006242 | Msa0936320:CDS | 45.0% | |
| TTTGTAGATTATGGCGACCG+AGG | - | chr6_3:7006412-7006431 | None:intergenic | 45.0% | |
| GGATCTGGTGTATGAAATGC+AGG | + | chr6_3:7006511-7006530 | Msa0936320:intron | 45.0% | |
| GCAGAGTGAGACAACAAAGA+AGG | + | chr6_3:7006661-7006680 | Msa0936320:CDS | 45.0% | |
| TTGGCAACAGGACTAATCTG+TGG | - | chr6_3:7006758-7006777 | None:intergenic | 45.0% | |
| GTTCTCTTGGAATTGGCAAC+AGG | - | chr6_3:7006770-7006789 | None:intergenic | 45.0% | |
| GATACATAAGGCGGCTTCAT+CGG | - | chr6_3:7005626-7005645 | None:intergenic | 45.0% | |
| GTCACAGTCGATACATAAGG+CGG | - | chr6_3:7005635-7005654 | None:intergenic | 45.0% | |
| GTGGTCACAGTCGATACATA+AGG | - | chr6_3:7005638-7005657 | None:intergenic | 45.0% | |
| GTGTTTGGAAGCGAGTTTGT+TGG | - | chr6_3:7005674-7005693 | None:intergenic | 45.0% | |
| TTGGGTTATGAAGAGCGAGA+CGG | - | chr6_3:7005699-7005718 | None:intergenic | 45.0% | |
| !! | GAGGGTGTTGTTTAGGAGTT+GGG | - | chr6_3:7005717-7005736 | None:intergenic | 45.0% |
| !! | AGAGGGTGTTGTTTAGGAGT+TGG | - | chr6_3:7005718-7005737 | None:intergenic | 45.0% |
| CCTGACAAATATCGCAGAGA+GGG | - | chr6_3:7005735-7005754 | None:intergenic | 45.0% | |
| ACCTGACAAATATCGCAGAG+AGG | - | chr6_3:7005736-7005755 | None:intergenic | 45.0% | |
| ! | GACTTGGTAGTAGCTGAAGA+AGG | - | chr6_3:7006053-7006072 | None:intergenic | 45.0% |
| TCTATGGAAGAAGGAAGTGG+TGG | + | chr6_3:7006128-7006147 | Msa0936320:CDS | 45.0% | |
| TGATTGAGACTCTACCTGGT+TGG | + | chr6_3:7006171-7006190 | Msa0936320:CDS | 45.0% | |
| TGTTCCCTTTGCTTTCTCCA+AGG | + | chr6_3:7006223-7006242 | Msa0936320:CDS | 45.0% | |
| TTTGTAGATTATGGCGACCG+AGG | - | chr6_3:7006412-7006431 | None:intergenic | 45.0% | |
| GGATCTGGTGTATGAAATGC+AGG | + | chr6_3:7006511-7006530 | Msa0936320:intron | 45.0% | |
| GCAGAGTGAGACAACAAAGA+AGG | + | chr6_3:7006661-7006680 | Msa0936320:CDS | 45.0% | |
| TTGGCAACAGGACTAATCTG+TGG | - | chr6_3:7006758-7006777 | None:intergenic | 45.0% | |
| GTTCTCTTGGAATTGGCAAC+AGG | - | chr6_3:7006770-7006789 | None:intergenic | 45.0% | |
| !! | TCGCAGAGAGGGTGTTGTTT+AGG | - | chr6_3:7005724-7005743 | None:intergenic | 50.0% |
| CCCTCTCTGCGATATTTGTC+AGG | + | chr6_3:7005732-7005751 | Msa0936320:CDS | 50.0% | |
| AGCTCTTCTCTCCTACCACA+TGG | - | chr6_3:7005874-7005893 | None:intergenic | 50.0% | |
| !! | AGAGAAGTTGGTGGTGCTTG+AGG | - | chr6_3:7006614-7006633 | None:intergenic | 50.0% |
| !! | TCGCAGAGAGGGTGTTGTTT+AGG | - | chr6_3:7005724-7005743 | None:intergenic | 50.0% |
| CCCTCTCTGCGATATTTGTC+AGG | + | chr6_3:7005732-7005751 | Msa0936320:CDS | 50.0% | |
| AGCTCTTCTCTCCTACCACA+TGG | - | chr6_3:7005874-7005893 | None:intergenic | 50.0% | |
| !! | AGAGAAGTTGGTGGTGCTTG+AGG | - | chr6_3:7006614-7006633 | None:intergenic | 50.0% |
| ACATAAGGCGGCTTCATCGG+CGG | - | chr6_3:7005623-7005642 | None:intergenic | 55.0% | |
| !! | GTTTGTTGGCGTGGTGGACA+CGG | - | chr6_3:7005660-7005679 | None:intergenic | 55.0% |
| !! | AAGCGAGTTTGTTGGCGTGG+TGG | - | chr6_3:7005666-7005685 | None:intergenic | 55.0% |
| !! | TGGAAGCGAGTTTGTTGGCG+TGG | - | chr6_3:7005669-7005688 | None:intergenic | 55.0% |
| AAGAGCGAGACGGTGGTGTT+TGG | - | chr6_3:7005689-7005708 | None:intergenic | 55.0% | |
| GGTTATGAAGAGCGAGACGG+TGG | - | chr6_3:7005696-7005715 | None:intergenic | 55.0% | |
| ACATAAGGCGGCTTCATCGG+CGG | - | chr6_3:7005623-7005642 | None:intergenic | 55.0% | |
| !! | GTTTGTTGGCGTGGTGGACA+CGG | - | chr6_3:7005660-7005679 | None:intergenic | 55.0% |
| !! | AAGCGAGTTTGTTGGCGTGG+TGG | - | chr6_3:7005666-7005685 | None:intergenic | 55.0% |
| !! | TGGAAGCGAGTTTGTTGGCG+TGG | - | chr6_3:7005669-7005688 | None:intergenic | 55.0% |
| AAGAGCGAGACGGTGGTGTT+TGG | - | chr6_3:7005689-7005708 | None:intergenic | 55.0% | |
| GGTTATGAAGAGCGAGACGG+TGG | - | chr6_3:7005696-7005715 | None:intergenic | 55.0% | |
| !! | TGTTGGCGTGGTGGACACGG+TGG | - | chr6_3:7005657-7005676 | None:intergenic | 65.0% |
| !! | TGTTGGCGTGGTGGACACGG+TGG | - | chr6_3:7005657-7005676 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 7005568 | 7006805 | 7005568 | ID=Msa0936320;Name=Msa0936320 |
| chr6_3 | mRNA | 7005568 | 7006805 | 7005568 | ID=Msa0936320-mRNA-1;Parent=Msa0936320;Name=Msa0936320-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|0|0|1|1|1|3|0|273 |
| chr6_3 | exon | 7005568 | 7005753 | 7005568 | ID=Msa0936320-mRNA-1:exon:2284;Parent=Msa0936320-mRNA-1 |
| chr6_3 | exon | 7005882 | 7006244 | 7005882 | ID=Msa0936320-mRNA-1:exon:2285;Parent=Msa0936320-mRNA-1 |
| chr6_3 | exon | 7006533 | 7006805 | 7006533 | ID=Msa0936320-mRNA-1:exon:2286;Parent=Msa0936320-mRNA-1 |
| chr6_3 | CDS | 7005568 | 7005753 | 7005568 | ID=Msa0936320-mRNA-1:cds;Parent=Msa0936320-mRNA-1 |
| chr6_3 | CDS | 7005882 | 7006244 | 7005882 | ID=Msa0936320-mRNA-1:cds;Parent=Msa0936320-mRNA-1 |
| chr6_3 | CDS | 7006533 | 7006805 | 7006533 | ID=Msa0936320-mRNA-1:cds;Parent=Msa0936320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
