AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0936790

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0936790 MtrunA17_Chr6g0452881 98.452 840 13 0 1 840 1 840 0.0 1709
Msa0936790 MtrunA17_Chr6g0452891 73.878 245 36 3 569 813 1 217 2.92e-120 362
Msa0936790 MtrunA17_Chr4g0037071 89.796 196 20 0 631 826 1 196 2.25e-113 345
Msa0936790 MtrunA17_Chr4g0037081 78.571 168 33 1 295 462 15 179 2.88e-81 259
Msa0936790 MtrunA17_Chr7g0265781 38.251 366 171 11 37 388 78 402 1.24e-60 223
Msa0936790 MtrunA17_Chr7g0265781 36.782 174 106 3 645 816 847 1018 9.17e-33 136
Msa0936790 MtrunA17_Chr1g0179281 38.503 374 170 14 40 394 80 412 1.07e-56 211
Msa0936790 MtrunA17_Chr1g0179281 35.632 174 106 4 645 814 838 1009 7.48e-31 130
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0936790 AT4G04885.1 45.455 869 363 20 1 840 22 808 0.0 635
Msa0936790 AT2G36480.2 36.490 359 176 11 41 379 88 414 4.21e-50 191
Msa0936790 AT2G36480.2 33.140 172 106 3 645 816 785 947 1.90e-25 114
Msa0936790 AT2G36480.1 36.490 359 176 11 41 379 88 414 4.21e-50 191
Msa0936790 AT2G36480.1 33.140 172 106 3 645 816 785 947 1.90e-25 114
Msa0936790 AT1G66500.1 35.326 368 157 16 496 821 68 396 5.55e-50 182
Msa0936790 AT5G43620.1 36.770 291 124 11 568 821 123 390 6.67e-46 170

Find 252 sgRNAs with CRISPR-Local

Find 470 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGATTATGGCCTAGTTAA+AGG 0.199059 6_3:+7729668 Msa0936790:CDS
GGAAAATTGAGAGAGAAATT+AGG 0.204170 6_3:-7726170 None:intergenic
CACATAATGCACATGTATTT+TGG 0.204278 6_3:-7731199 None:intergenic
CAGCGTCACAATTTACTTAT+AGG 0.223072 6_3:+7730446 Msa0936790:CDS
TCTATTTGTCTTACGTATCT+TGG 0.237116 6_3:-7728960 None:intergenic
CATCAATGCACCATTTATAT+TGG 0.241138 6_3:-7732409 None:intergenic
TGCCTATCAATTCCAATTCT+TGG 0.268993 6_3:-7729566 None:intergenic
AAGAGTTGTTTCCGATTCTT+TGG 0.278868 6_3:-7730549 None:intergenic
CCCCATCATGCTGTTGATTA+TGG 0.284990 6_3:+7729656 Msa0936790:CDS
AGCAGAAGCCCTCTCGTAAA+TGG 0.298225 6_3:+7731045 Msa0936790:CDS
TCAGTGTCAAGGGTGTTTCC+TGG 0.301890 6_3:+7730070 Msa0936790:CDS
GCTTACTGCCAGAAGTTTCT+TGG 0.305569 6_3:-7729847 None:intergenic
CCTATACATGTACATAATTT+AGG 0.307610 6_3:-7732169 None:intergenic
CCTGATGGTTGATTATTAAC+TGG 0.309564 6_3:-7728879 None:intergenic
TAGGCATATGCCCTCATATA+TGG 0.310130 6_3:+7729583 Msa0936790:CDS
GAAAATTGAGAGAGAAATTA+GGG 0.313585 6_3:-7726169 None:intergenic
GCATTGGCTGCAACAGTAAC+AGG 0.313592 6_3:-7730040 None:intergenic
TCTTTGACTGCCTTCTTCAT+AGG 0.318589 6_3:-7732020 None:intergenic
ATGCCTGTTGTTATTCCATT+AGG 0.320007 6_3:-7731296 None:intergenic
GGGGTGTGAAATTGAGAAAT+TGG 0.329039 6_3:-7726192 None:intergenic
GATTGGGATGAGGTGGCATC+TGG 0.331410 6_3:-7730630 None:intergenic
TGAACAATTTCTTCTGTTGA+AGG 0.331657 6_3:-7726326 None:intergenic
GATTCGAATGGATTCCTAAC+AGG 0.333615 6_3:-7730214 None:intergenic
CTGCATTTAGCATGAATAAT+GGG 0.336904 6_3:-7731338 None:intergenic
TGGGATGGAGCAGTAATTAC+TGG 0.337629 6_3:+7732318 Msa0936790:three_prime_UTR
AGATGAAGAGTTGGCTGTTC+CGG 0.339955 6_3:+7731166 Msa0936790:CDS
TCAAAAGCTGCAGGCAAAAC+TGG 0.340119 6_3:-7730121 None:intergenic
TGACGAACCTTCAGAGTATC+TGG 0.351247 6_3:-7730885 None:intergenic
CCACTGTAACTTATGAGTTT+CGG 0.352733 6_3:+7732081 Msa0936790:three_prime_UTR
TCTAGGAAGATTACCGTATA+AGG 0.356434 6_3:-7730925 None:intergenic
TCTGCTATGCGACATCTCTT+TGG 0.357635 6_3:+7728789 Msa0936790:CDS
TTATTCCATTAGGCGCATTA+AGG 0.358655 6_3:-7731286 None:intergenic
TTGAGAGAGAAATTAGGGTT+AGG 0.360280 6_3:-7726164 None:intergenic
CCTAAATTATGTACATGTAT+AGG 0.366794 6_3:+7732169 Msa0936790:three_prime_UTR
TATGGCCTAGTTAAAGGATT+AGG 0.367937 6_3:+7729674 Msa0936790:CDS
TCTGCATTTAGCATGAATAA+TGG 0.369592 6_3:-7731339 None:intergenic
CTATTTGTCTTACGTATCTT+GGG 0.379077 6_3:-7728959 None:intergenic
TGAGAGAGAAATTAGGGTTA+GGG 0.380815 6_3:-7726163 None:intergenic
GTTTCATCCTCACAGGTTGC+AGG 0.381654 6_3:+7729437 Msa0936790:intron
TGGGATGGAGCGTGTGGGCC+AGG 0.382563 6_3:-7730610 None:intergenic
TACGAGAGGGCTTCTGCTTA+CGG 0.385096 6_3:-7731040 None:intergenic
GTAAGGAACTGAAAATTTGC+AGG 0.385387 6_3:-7732242 None:intergenic
GGCATAACAGGTCGTACATT+TGG 0.386665 6_3:-7730511 None:intergenic
TAGGCATCAATTAGTGCTCT+TGG 0.388516 6_3:-7729809 None:intergenic
ATGACTCACAATGGTACTAT+TGG 0.398029 6_3:-7730245 None:intergenic
GGCTGTTGGCTTGGTACAAA+TGG 0.400747 6_3:-7730658 None:intergenic
CAGCTACCTAATCAGCTTCC+TGG 0.402588 6_3:+7730352 Msa0936790:CDS
TCTGCAATCAGTGCCTTATA+CGG 0.402883 6_3:+7730912 Msa0936790:CDS
TCTTCGTCACCACCAAGAAT+TGG 0.403612 6_3:+7729554 Msa0936790:CDS
ACGTGGAGCATGCACATTTA+CGG 0.404948 6_3:-7730155 None:intergenic
GCTGATTAGGTAGCTGATAC+AGG 0.407419 6_3:-7730345 None:intergenic
GTGACTGCTGTGCTCGTCTT+GGG 0.407489 6_3:-7730979 None:intergenic
AGAAACCGATAGTTGGTTGC+AGG 0.410939 6_3:-7730006 None:intergenic
CGCATAGCAGAATGTAAACT+TGG 0.411538 6_3:-7728777 None:intergenic
ATTGTTGTATCCAATATAAA+TGG 0.413298 6_3:+7732399 Msa0936790:three_prime_UTR
TAAATAGTCATCCATATATG+AGG 0.415667 6_3:-7729594 None:intergenic
GACAAAAGCCAAGAAACTTC+TGG 0.416293 6_3:+7729839 Msa0936790:CDS
GAAGATCTTCCAACCCTACT+TGG 0.416371 6_3:-7729536 None:intergenic
GGAGCGTGTGGGCCAGGTGG+AGG 0.420614 6_3:-7730604 None:intergenic
GACGGTGTTTGTACACTGTT+TGG 0.421276 6_3:-7730394 None:intergenic
AAAGAAAGAAGATGAAGAGT+TGG 0.422834 6_3:+7731157 Msa0936790:CDS
CGATTCTTTGGCCTGGCAAA+GGG 0.424806 6_3:-7730537 None:intergenic
AGAAGTATCGAACATATTCC+TGG 0.424947 6_3:-7728629 None:intergenic
TGTGACTGCTGTGCTCGTCT+TGG 0.427292 6_3:-7730980 None:intergenic
GGATTCTTCGATGGAAATAT+AGG 0.431337 6_3:-7730193 None:intergenic
CTTAGTGGTGCAGAGGCATT+GGG 0.433928 6_3:+7731089 Msa0936790:CDS
GACGTGGTTGTCCGTTACTA+AGG 0.434804 6_3:-7729781 None:intergenic
GGCAAAGGGAGAGGCATAAC+AGG 0.435149 6_3:-7730523 None:intergenic
ATCAGACCAGGAAGCTGATT+AGG 0.435569 6_3:-7730358 None:intergenic
GCTTCCTTCACTCTATCTCT+TGG 0.436037 6_3:+7728584 Msa0936790:CDS
GTATACCTTAATGCGCCTAA+TGG 0.441302 6_3:+7731281 Msa0936790:CDS
CCGATTCTTTGGCCTGGCAA+AGG 0.444884 6_3:-7730538 None:intergenic
CATCAGGCGTTAATTCCCTT+AGG 0.446704 6_3:+7728895 Msa0936790:CDS
AATCCTCGTTGGTCGATTCA+AGG 0.447934 6_3:+7726253 Msa0936790:CDS
GCCATAATCAACAGCATGAT+GGG 0.449248 6_3:-7729657 None:intergenic
GCTTAGTGGTGCAGAGGCAT+TGG 0.449928 6_3:+7731088 Msa0936790:CDS
ACTGTTGGAAATGCAAATTT+CGG 0.451845 6_3:+7729482 Msa0936790:CDS
TAAGTAAATTGTGACGCTGC+TGG 0.452433 6_3:-7730442 None:intergenic
AATCGACCAACGAGGATTGA+TGG 0.453327 6_3:-7726248 None:intergenic
TATAGTTTATTGCAGTCAAA+AGG 0.456065 6_3:+7732209 Msa0936790:three_prime_UTR
GCTCGTCTTGGGATTTGAAT+CGG 0.457134 6_3:-7730968 None:intergenic
GCCTTTGTTAGTTGAGCGGC+TGG 0.457470 6_3:+7729868 Msa0936790:CDS
GTTATGCCTCTCCCTTTGCC+AGG 0.459622 6_3:+7730526 Msa0936790:CDS
AGCCAATGAGATTACACCTT+GGG 0.459714 6_3:-7730719 None:intergenic
TGGAAATATAGGAGTTATGC+TGG 0.461860 6_3:-7730182 None:intergenic
TAACAGGTCGTACATTTGGC+AGG 0.462054 6_3:-7730507 None:intergenic
TCTTCCCTCCTTCTGTCTTA+CGG 0.462978 6_3:+7728826 Msa0936790:CDS
TTGGGAGCCGAATCAGCTCC+AGG 0.463136 6_3:+7731107 Msa0936790:CDS
TTCCATCGAAGAATCCTGTT+AGG 0.463431 6_3:+7730200 Msa0936790:CDS
GGGTGTGAAATTGAGAAATT+GGG 0.466361 6_3:-7726191 None:intergenic
CCAACAGTTGGCTGTTGGCT+TGG 0.468279 6_3:-7730667 None:intergenic
GATTGTTCATGCACAGGAAA+AGG 0.472985 6_3:-7730283 None:intergenic
GAATCTCCTCGACCAACTCA+TGG 0.475030 6_3:+7728924 Msa0936790:CDS
TGTGGGCCAGGTGGAGGTAA+AGG 0.475834 6_3:-7730598 None:intergenic
CTCTACCTAATCCTTTAACT+AGG 0.477129 6_3:-7729679 None:intergenic
TGGTACAAATGGACTAGGAT+TGG 0.478050 6_3:-7730647 None:intergenic
GGTGAAAGGTTAGACTCAAC+AGG 0.478337 6_3:+7729458 Msa0936790:CDS
TTGGCATTTATTGATTCGAA+TGG 0.478491 6_3:-7730226 None:intergenic
GGCCCAAGGTGTAATCTCAT+TGG 0.478710 6_3:+7730717 Msa0936790:CDS
TTGAACAATCTCATTGCTCA+TGG 0.479291 6_3:-7726216 None:intergenic
ACTTATAGGCCATCTTTGCC+AGG 0.479835 6_3:+7730460 Msa0936790:CDS
CCAGTTAATAATCAACCATC+AGG 0.481608 6_3:+7728879 Msa0936790:CDS
ATCAGGCGTTAATTCCCTTA+GGG 0.483589 6_3:+7728896 Msa0936790:CDS
GGCATCTGGGATGGAGCGTG+TGG 0.487332 6_3:-7730616 None:intergenic
CTTTGGCCTGGCAAAGGGAG+AGG 0.490850 6_3:-7730532 None:intergenic
GGATAGAAATGGTATGGATA+AGG 0.494929 6_3:+7729889 Msa0936790:CDS
CAACATCGTAATCATGCTAA+AGG 0.497052 6_3:+7726425 Msa0936790:CDS
GCGCCTAATGGAATAACAAC+AGG 0.497466 6_3:+7731293 Msa0936790:CDS
GGCATAGACAGGTCACAGTT+AGG 0.499248 6_3:+7731314 Msa0936790:CDS
TATTGTGAAGAATGTTGGCC+AGG 0.499257 6_3:+7728611 Msa0936790:CDS
TTAGACTCAACAGGAACTGT+TGG 0.499630 6_3:+7729467 Msa0936790:CDS
ATAGTAAGATCAGTGATGAT+AGG 0.500445 6_3:-7726392 None:intergenic
GGTACAAATGGACTAGGATT+GGG 0.500633 6_3:-7730646 None:intergenic
GGCCATAATCAACAGCATGA+TGG 0.502882 6_3:-7729658 None:intergenic
ACGGAGGAGTGGATGTATAG+AGG 0.502902 6_3:+7731254 Msa0936790:CDS
CTGAAGAGGAGGAGTTCGAT+TGG 0.502985 6_3:+7729936 Msa0936790:CDS
TGAATTCTTCAATTGTTCAA+AGG 0.503051 6_3:-7726063 None:intergenic
CCACAAGTTGTGCACTGTCT+AGG 0.505428 6_3:-7730942 None:intergenic
ATAGATTTCGTTACCTGTGA+AGG 0.506777 6_3:-7730751 None:intergenic
TCACTGTAAAACTCCTCAAA+AGG 0.506831 6_3:-7731227 None:intergenic
GGATGAGGTGGCATCTGGGA+TGG 0.507178 6_3:-7730625 None:intergenic
GGACCATGTCCTGGCAAAGA+TGG 0.508872 6_3:-7730469 None:intergenic
TGCGACATCTCTTTGGTACC+TGG 0.510544 6_3:+7728796 Msa0936790:CDS
TAATTTGATTAATTCACTCA+TGG 0.510613 6_3:+7730696 Msa0936790:CDS
TCTGATGAGAAACCGATAGT+TGG 0.513144 6_3:-7730013 None:intergenic
TAATCAATTTGTCCCAAGTA+GGG 0.514638 6_3:+7729523 Msa0936790:CDS
CCTTTGCCAGGCCAAAGAAT+CGG 0.515014 6_3:+7730538 Msa0936790:CDS
TATTTAGCTGACAATTCTAC+TGG 0.515482 6_3:+7729611 Msa0936790:CDS
GGATCCTTTGTAAATGCTCA+TGG 0.515592 6_3:-7732357 None:intergenic
CACCAAGAATTGGAATTGAT+AGG 0.516933 6_3:+7729564 Msa0936790:CDS
ATAAATGGTGCATTGATGAA+TGG 0.520360 6_3:+7732414 Msa0936790:three_prime_UTR
CAATTTGTCCCAAGTAGGGT+TGG 0.520932 6_3:+7729527 Msa0936790:CDS
AGGCCATCTTTGCCAGGACA+TGG 0.522510 6_3:+7730466 Msa0936790:CDS
TTGCGACCTTTACCTCCACC+TGG 0.523511 6_3:+7730592 Msa0936790:CDS
GGAGTTATGCTGGGAGGACG+TGG 0.523802 6_3:-7730172 None:intergenic
ATTCAAACAGTAAATGCTCA+TGG 0.523956 6_3:-7732378 None:intergenic
TTGTTTCCGATTCTTTGGCC+TGG 0.524049 6_3:-7730544 None:intergenic
AACAATCTCATTGCTCATGG+TGG 0.527409 6_3:-7726213 None:intergenic
GTGTTTGTACACTGTTTGGC+GGG 0.527616 6_3:-7730390 None:intergenic
AGAGCACTAATTGATGCCTA+TGG 0.528940 6_3:+7729812 Msa0936790:CDS
TGCCTCATTTCAAAAGCTGC+AGG 0.529200 6_3:-7730130 None:intergenic
CAAAATACATGTGCATTATG+TGG 0.529245 6_3:+7731200 Msa0936790:CDS
TTCCGACTATCACCAGAAAA+CGG 0.530968 6_3:-7729731 None:intergenic
GTTGAGCGGCTGGATAGAAA+TGG 0.532637 6_3:+7729878 Msa0936790:CDS
AAGGTCGCAAAGCTCCTCCC+TGG 0.535607 6_3:-7730579 None:intergenic
TGAAGAGGAGGAGTTCGATT+GGG 0.536389 6_3:+7729937 Msa0936790:CDS
CTATCAATTCCAATTCTTGG+TGG 0.538401 6_3:-7729563 None:intergenic
TAGATTTCGTTACCTGTGAA+GGG 0.539547 6_3:-7730750 None:intergenic
GAATAACAACAGGCATAGAC+AGG 0.540275 6_3:+7731303 Msa0936790:CDS
GGTTTCCTGCAACCAACTAT+CGG 0.543300 6_3:+7730001 Msa0936790:CDS
CCATCACAAAATCTTCAGAC+GGG 0.543390 6_3:-7731373 None:intergenic
GAGGAGATTCAGAAGCCCTA+AGG 0.544074 6_3:-7728911 None:intergenic
AGCACAGCAGTCACATGGAT+TGG 0.544101 6_3:+7730988 Msa0936790:CDS
AATATCCAACAGTTGGCTGT+TGG 0.544187 6_3:-7730672 None:intergenic
AAATTAGAATATCCAACAGT+TGG 0.545058 6_3:-7730679 None:intergenic
GGTGTTTGTACACTGTTTGG+CGG 0.545314 6_3:-7730391 None:intergenic
TTAATCAATTTGTCCCAAGT+AGG 0.545867 6_3:+7729522 Msa0936790:CDS
CTCATAGCAGGACCATGTCC+TGG 0.548016 6_3:-7730478 None:intergenic
GACAGTATTGTGAAGAATGT+TGG 0.548430 6_3:+7728606 Msa0936790:CDS
TGACACTGAAGAAGTTGCAT+TGG 0.548483 6_3:-7730056 None:intergenic
TGGCTTGGTACAAATGGACT+AGG 0.548518 6_3:-7730652 None:intergenic
GAGAAGAAGAGTTGAGTGAG+TGG 0.550334 6_3:+7729699 Msa0936790:CDS
GGCTAATCAAGCCCCTTCAC+AGG 0.551075 6_3:+7730738 Msa0936790:CDS
GCGGCTGGATAGAAATGGTA+TGG 0.551376 6_3:+7729883 Msa0936790:CDS
GTAGACCATGGTAGAAGTAA+TGG 0.552062 6_3:+7729980 Msa0936790:CDS
CCTCACAGGTTGCAGGTGAA+AGG 0.553428 6_3:+7729444 Msa0936790:intron
GGGATGGAGCAGTAATTACT+GGG 0.554304 6_3:+7732319 Msa0936790:three_prime_UTR
ATGCAACTTCTTCAGTGTCA+AGG 0.556856 6_3:+7730059 Msa0936790:CDS
GCATCTGGGATGGAGCGTGT+GGG 0.559981 6_3:-7730615 None:intergenic
ATCTTCCGTAAGACAGAAGG+AGG 0.562765 6_3:-7728831 None:intergenic
TTCCTAACAGGATTCTTCGA+TGG 0.563320 6_3:-7730202 None:intergenic
CTAAGGGAATTAACGCCTGA+TGG 0.563337 6_3:-7728894 None:intergenic
ATTGGGATGAGGTGGCATCT+GGG 0.564645 6_3:-7730629 None:intergenic
TGCAACTTCTTCAGTGTCAA+GGG 0.565136 6_3:+7730060 Msa0936790:CDS
CCAAGCCAACAGCCAACTGT+TGG 0.566173 6_3:+7730667 Msa0936790:CDS
TATTTGCAACCGTATTGTTG+AGG 0.569428 6_3:+7726460 Msa0936790:CDS
ATGCAGGGCACCTATGAAGA+AGG 0.570350 6_3:+7732010 Msa0936790:intron
TCCATCACAAAATCTTCAGA+CGG 0.571706 6_3:-7731374 None:intergenic
ACAATCTCATTGCTCATGGT+GGG 0.574651 6_3:-7726212 None:intergenic
TCAATATTTGAATTGAGACC+AGG 0.575901 6_3:-7730088 None:intergenic
CTACCATGGTCTACTACTGT+AGG 0.576123 6_3:-7729971 None:intergenic
ATTAATTCACTCATGGCCCA+AGG 0.576294 6_3:+7730703 Msa0936790:CDS
AAGATCTTCCAACCCTACTT+GGG 0.576601 6_3:-7729535 None:intergenic
GTAAGCCTTTGTTAGTTGAG+CGG 0.577243 6_3:+7729864 Msa0936790:CDS
AACAGGTCGTACATTTGGCA+GGG 0.583155 6_3:-7730506 None:intergenic
TAGCTGACAATTCTACTGGT+AGG 0.585559 6_3:+7729615 Msa0936790:CDS
CCTAGACAGTGCACAACTTG+TGG 0.586792 6_3:+7730942 Msa0936790:CDS
AATAGTACCATTGTGAGTCA+TGG 0.588735 6_3:+7730247 Msa0936790:CDS
ACAGGTCGTACATTTGGCAG+GGG 0.590048 6_3:-7730505 None:intergenic
GATGGAGCGTGTGGGCCAGG+TGG 0.590396 6_3:-7730607 None:intergenic
AGCAGTAATTACTGGGGACA+TGG 0.590558 6_3:+7732326 Msa0936790:three_prime_UTR
TGCAACGATTGTTCATGCAC+AGG 0.594090 6_3:-7730289 None:intergenic
GGACTAGGATTGGGATGAGG+TGG 0.594447 6_3:-7730637 None:intergenic
AATTACTGGGGACATGGCAA+AGG 0.594802 6_3:+7732332 Msa0936790:three_prime_UTR
AGACGAGCACAGCAGTCACA+TGG 0.599845 6_3:+7730983 Msa0936790:CDS
AGATTTCGTTACCTGTGAAG+GGG 0.600998 6_3:-7730749 None:intergenic
AGTGAGACGATGTGGCTTAG+TGG 0.601641 6_3:+7731074 Msa0936790:CDS
AATCTCCTCGACCAACTCAT+GGG 0.602277 6_3:+7728925 Msa0936790:CDS
GTTTGATCCAGATACTCTGA+AGG 0.602293 6_3:+7730878 Msa0936790:CDS
AGGAGATTCAGAAGCCCTAA+GGG 0.603089 6_3:-7728910 None:intergenic
TCAATCTTCCGTAAGACAGA+AGG 0.606789 6_3:-7728834 None:intergenic
CTCACAAACCATTTACGAGA+GGG 0.607148 6_3:-7731053 None:intergenic
GGAAACCATTACTTCTACCA+TGG 0.608961 6_3:-7729985 None:intergenic
TCCAGCCGCTCAACTAACAA+AGG 0.610598 6_3:-7729869 None:intergenic
GCAGAATCTTCTGAAATACA+TGG 0.610774 6_3:+7732139 Msa0936790:three_prime_UTR
GGGTTAGATGAAATCAGACC+AGG 0.611439 6_3:-7730370 None:intergenic
GGAAATATAGGAGTTATGCT+GGG 0.611878 6_3:-7730181 None:intergenic
TTAACATGTATCCCATGAGT+TGG 0.613297 6_3:-7728936 None:intergenic
TGTGACGCTGCTGGATCCTG+AGG 0.613390 6_3:-7730433 None:intergenic
AACGTCGTGAAGAAGATCCT+CGG 0.613895 6_3:+7726288 Msa0936790:CDS
CCTCCACCATCAATCCTCGT+TGG 0.618578 6_3:+7726242 Msa0936790:CDS
TGTATCCCATGAGTTGGTCG+AGG 0.619165 6_3:-7728930 None:intergenic
AAAGCTGCAGGCAAAACTGG+TGG 0.620190 6_3:-7730118 None:intergenic
AAATAGTCATCCATATATGA+GGG 0.620923 6_3:-7729593 None:intergenic
ATGTACATAATTTAGGCAAG+AGG 0.623567 6_3:-7732162 None:intergenic
CGACCAACGAGGATTGATGG+TGG 0.625674 6_3:-7726245 None:intergenic
GACGCTGCTGGATCCTGAGG+TGG 0.626580 6_3:-7730430 None:intergenic
CCAACGAGGATTGATGGTGG+AGG 0.631737 6_3:-7726242 None:intergenic
ATGGCAGAATACTGAAGAGG+AGG 0.632607 6_3:+7729925 Msa0936790:CDS
TGCATTTAGCATGAATAATG+GGG 0.635399 6_3:-7731337 None:intergenic
ACAGTGATGAAACGGAGGAG+TGG 0.635697 6_3:+7731243 Msa0936790:CDS
CAATCTCATTGCTCATGGTG+GGG 0.637259 6_3:-7726211 None:intergenic
CGTCTTGGGATTTGAATCGG+AGG 0.638892 6_3:-7730965 None:intergenic
CTGTCCAAGAGATAGAGTGA+AGG 0.641585 6_3:-7728588 None:intergenic
AATGGACTAGGATTGGGATG+AGG 0.642770 6_3:-7730640 None:intergenic
GTTGGCTGTTCCGGCCGACG+AGG 0.646045 6_3:+7731175 Msa0936790:CDS
CCGAAACTCATAAGTTACAG+TGG 0.652773 6_3:-7732081 None:intergenic
TGTCTTACGGAAGATTGACG+TGG 0.654293 6_3:+7728839 Msa0936790:CDS
ATAAGGTTATGACAACATCA+TGG 0.656509 6_3:+7729906 Msa0936790:CDS
AATTAGACCATGACTCACAA+TGG 0.658655 6_3:-7730254 None:intergenic
ATAAACTATAGATGTTACAC+AGG 0.660062 6_3:-7732196 None:intergenic
CTGCAGGCAAAACTGGTGGA+CGG 0.660560 6_3:-7730114 None:intergenic
ATGACATATAGCCTTAGTAA+CGG 0.660592 6_3:+7729770 Msa0936790:CDS
TAGCCAATGAGATTACACCT+TGG 0.661273 6_3:-7730720 None:intergenic
GATGTGGCTTAGTGGTGCAG+AGG 0.663497 6_3:+7731082 Msa0936790:CDS
ATCATGGCAGAATACTGAAG+AGG 0.665757 6_3:+7729922 Msa0936790:CDS
TAACCTACTTCGGGTAGACG+CGG 0.669168 6_3:-7728654 None:intergenic
CATCACAAAATCTTCAGACG+GGG 0.674739 6_3:-7731372 None:intergenic
CCATAATCAACAGCATGATG+GGG 0.676024 6_3:-7729656 None:intergenic
CAGGTCGTACATTTGGCAGG+GGG 0.677425 6_3:-7730504 None:intergenic
ACTCACAAACCATTTACGAG+AGG 0.681960 6_3:-7731054 None:intergenic
GGATCCATGAGCATTTACAA+AGG 0.684536 6_3:+7732353 Msa0936790:three_prime_UTR
GTGCATGAACAATCGTTGCA+CGG 0.685001 6_3:+7730292 Msa0936790:CDS
AGTCCTACAGTAGTAGACCA+TGG 0.699248 6_3:+7729968 Msa0936790:CDS
GGTTGCGAATTTCTCAACCG+AGG 0.700396 6_3:-7726305 None:intergenic
GCAGTCAAAGAAAACGAATG+CGG 0.700511 6_3:+7732032 Msa0936790:CDS
GGTTTGTGAGTGAGACGATG+TGG 0.720083 6_3:+7731066 Msa0936790:CDS
TCTTCCGTAAGACAGAAGGA+GGG 0.728444 6_3:-7728830 None:intergenic
AATATAGGAGTTATGCTGGG+AGG 0.735215 6_3:-7730178 None:intergenic
GGATGGAGCAGTAATTACTG+GGG 0.757111 6_3:+7732320 Msa0936790:three_prime_UTR
TTTGCCAACTGAGACCACTG+AGG 0.763418 6_3:+7731133 Msa0936790:CDS
AAGCCTTGAATCGACCAACG+AGG 0.765396 6_3:-7726256 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGATTAATAATTGTTTATT+TGG + chr6_3:7726708-7726727 Msa0936790:intron 10.0%
!! TGATTAATAATTGTTTATTT+GGG + chr6_3:7726709-7726728 Msa0936790:intron 10.0%
!! ATAATTTCGTTTAATAATAA+TGG + chr6_3:7727176-7727195 Msa0936790:intron 10.0%
!! TAATTTCGTTTAATAATAAT+GGG + chr6_3:7727177-7727196 Msa0936790:intron 10.0%
!! ATATAATATAATTACAAAGT+TGG - chr6_3:7730835-7730854 None:intergenic 10.0%
!! TGTAATTATATTATATTTGT+AGG + chr6_3:7730839-7730858 Msa0936790:intron 10.0%
!!! ACAATTTTAAAAGATTTTTT+GGG - chr6_3:7732278-7732297 None:intergenic 10.0%
!! TAAAAAATCAAATAGAACAA+TGG - chr6_3:7726585-7726604 None:intergenic 15.0%
!! AATTTCGTTTAATAATAATG+GGG + chr6_3:7727178-7727197 Msa0936790:intron 15.0%
!! ACAAAATAACATATTAACAT+AGG - chr6_3:7727698-7727717 None:intergenic 15.0%
!! TATTTATAGAAAATGATAAG+TGG - chr6_3:7727968-7727987 None:intergenic 15.0%
!! AAATGAAATAGAAAAGAAAA+AGG - chr6_3:7728450-7728469 None:intergenic 15.0%
!! ATAACAGAATTAAATCATTT+AGG - chr6_3:7728698-7728717 None:intergenic 15.0%
!!! AAATATTTTAATTTCTGTTG+AGG + chr6_3:7729258-7729277 Msa0936790:intron 15.0%
!!! CAATTTTAAAAGATTTTTTG+GGG - chr6_3:7732277-7732296 None:intergenic 15.0%
!!! GACAATTTTAAAAGATTTTT+TGG - chr6_3:7732279-7732298 None:intergenic 15.0%
!!! ATTTCTTTTACATTATTTCT+GGG + chr6_3:7732299-7732318 Msa0936790:three_prime_UTR 15.0%
!!! GAATTTTGTTTATTGCTATT+CGG + chr6_3:7726611-7726630 Msa0936790:intron 20.0%
!!! TTTTAGTTCATTTCATTTGA+TGG + chr6_3:7726651-7726670 Msa0936790:intron 20.0%
!!! TTTAGTTCATTTCATTTGAT+GGG + chr6_3:7726652-7726671 Msa0936790:intron 20.0%
!! ATAATTGTTTATTTGGGAAT+TGG + chr6_3:7726715-7726734 Msa0936790:intron 20.0%
!!! AGTACTTAAAAATCGATTTT+TGG + chr6_3:7727096-7727115 Msa0936790:intron 20.0%
!!! TTTAATAATAATGGGGTTTA+TGG + chr6_3:7727185-7727204 Msa0936790:intron 20.0%
!! CAAAATCATTCAATTTATTC+AGG - chr6_3:7727568-7727587 None:intergenic 20.0%
!!! CTGAATAAATTGAATGATTT+TGG + chr6_3:7727566-7727585 Msa0936790:intron 20.0%
!! CTCTTCTTATTAAGTTTATA+CGG + chr6_3:7728139-7728158 Msa0936790:intron 20.0%
!! TCTTCTTATTAAGTTTATAC+GGG + chr6_3:7728140-7728159 Msa0936790:intron 20.0%
!! AAATAAGTTTGATTCTTTGT+TGG + chr6_3:7728186-7728205 Msa0936790:intron 20.0%
!! CCTGAAAAAAAATAAACAAT+TGG - chr6_3:7728548-7728567 None:intergenic 20.0%
!!! CCAATTGTTTATTTTTTTTC+AGG + chr6_3:7728545-7728564 Msa0936790:intron 20.0%
!! TAATTTGATTAATTCACTCA+TGG + chr6_3:7730696-7730715 Msa0936790:CDS 20.0%
!!! TTATATTTGTAGGATTTTGT+TGG + chr6_3:7730849-7730868 Msa0936790:intron 20.0%
!!! TTATTTTTTTACTTTCCCAA+TGG + chr6_3:7731628-7731647 Msa0936790:intron 20.0%
!!! CATTTCTTTTACATTATTTC+TGG + chr6_3:7732298-7732317 Msa0936790:three_prime_UTR 20.0%
!! ATTGTTGTATCCAATATAAA+TGG + chr6_3:7732399-7732418 Msa0936790:three_prime_UTR 20.0%
! TGAATTCTTCAATTGTTCAA+AGG - chr6_3:7726066-7726085 None:intergenic 25.0%
!!! AAACATTAAGGGTTTTGAAA+CGG - chr6_3:7726122-7726141 None:intergenic 25.0%
! GAAAATTGAGAGAGAAATTA+GGG - chr6_3:7726172-7726191 None:intergenic 25.0%
! AAACAAAAACCTCAACAATA+CGG - chr6_3:7726472-7726491 None:intergenic 25.0%
! ATAACTCTTAATCTGAACAA+TGG - chr6_3:7726523-7726542 None:intergenic 25.0%
! AAGAATTGAATTCACAACAA+TGG - chr6_3:7726555-7726574 None:intergenic 25.0%
! TGAAAATGATAAGGATTACA+TGG + chr6_3:7726804-7726823 Msa0936790:intron 25.0%
!! TTGATAACATTGTTAACAGA+TGG + chr6_3:7727026-7727045 Msa0936790:intron 25.0%
! TAAGTACTCAATTGTGTTAA+TGG - chr6_3:7727084-7727103 None:intergenic 25.0%
! ACTAACTATTTCACTTTCAT+TGG - chr6_3:7727124-7727143 None:intergenic 25.0%
! TGAAATAGTTAGTGTATCAA+TGG + chr6_3:7727131-7727150 Msa0936790:intron 25.0%
! ATAATAGGAATTAGGAATTC+AGG + chr6_3:7727220-7727239 Msa0936790:intron 25.0%
! ACAAACATTTCATCTGAAAA+GGG + chr6_3:7727337-7727356 Msa0936790:intron 25.0%
! GAAATAAATGAGAATGAACA+AGG + chr6_3:7727518-7727537 Msa0936790:intron 25.0%
! GAAATATATATGAAGTAAGC+TGG - chr6_3:7727672-7727691 None:intergenic 25.0%
! CGTATAAACTTAATAAGAAG+AGG - chr6_3:7728141-7728160 None:intergenic 25.0%
!! GAATCAAACTTATTTCTCAT+TGG - chr6_3:7728181-7728200 None:intergenic 25.0%
! TTTGTTGGAAAAATCATACA+GGG + chr6_3:7728201-7728220 Msa0936790:intron 25.0%
! CTAAAATCAAAATTGATACG+AGG - chr6_3:7728258-7728277 None:intergenic 25.0%
! ACTTTGTAAGAATTGGTTAA+AGG + chr6_3:7728304-7728323 Msa0936790:intron 25.0%
! TAAGAATTGGTTAAAGGATT+CGG + chr6_3:7728310-7728329 Msa0936790:intron 25.0%
! AAATTACAATAACCTACTTC+GGG - chr6_3:7728666-7728685 None:intergenic 25.0%
! CAAATTACAATAACCTACTT+CGG - chr6_3:7728667-7728686 None:intergenic 25.0%
!! GTACTCCTTACAAAATATTT+TGG + chr6_3:7729033-7729052 Msa0936790:intron 25.0%
!!! TCCTTACAAAATATTTTGGA+TGG + chr6_3:7729037-7729056 Msa0936790:intron 25.0%
!! TCCATCCAAAATATTTTGTA+AGG - chr6_3:7729041-7729060 None:intergenic 25.0%
! ATTTAGTTGCGGATTTAATA+AGG + chr6_3:7729071-7729090 Msa0936790:intron 25.0%
! AAATAGTCATCCATATATGA+GGG - chr6_3:7729596-7729615 None:intergenic 25.0%
! TAAATAGTCATCCATATATG+AGG - chr6_3:7729597-7729616 None:intergenic 25.0%
! AAATTAGAATATCCAACAGT+TGG - chr6_3:7730682-7730701 None:intergenic 25.0%
! GAAAAAATATAGTTCAATGC+TGG - chr6_3:7731480-7731499 None:intergenic 25.0%
!! GAATAAATCTAGTTTAATGC+TGG - chr6_3:7731602-7731621 None:intergenic 25.0%
! ATGTGCAATTTACGATATAA+TGG - chr6_3:7731736-7731755 None:intergenic 25.0%
!! ATATCGTAAATTGCACATTT+TGG + chr6_3:7731738-7731757 Msa0936790:intron 25.0%
! CCTATACATGTACATAATTT+AGG - chr6_3:7732172-7732191 None:intergenic 25.0%
! CCTAAATTATGTACATGTAT+AGG + chr6_3:7732169-7732188 Msa0936790:three_prime_UTR 25.0%
! ATAAACTATAGATGTTACAC+AGG - chr6_3:7732199-7732218 None:intergenic 25.0%
! TATAGTTTATTGCAGTCAAA+AGG + chr6_3:7732209-7732228 Msa0936790:three_prime_UTR 25.0%
GGAAAATTGAGAGAGAAATT+AGG - chr6_3:7726173-7726192 None:intergenic 30.0%
TGAACAATTTCTTCTGTTGA+AGG - chr6_3:7726329-7726348 None:intergenic 30.0%
ATAGTAAGATCAGTGATGAT+AGG - chr6_3:7726395-7726414 None:intergenic 30.0%
! TGGTGTGGAATTTTACAAAA+GGG - chr6_3:7726503-7726522 None:intergenic 30.0%
! ATGGTGTGGAATTTTACAAA+AGG - chr6_3:7726504-7726523 None:intergenic 30.0%
! TTTGTTTATTGCTATTCGGT+AGG + chr6_3:7726615-7726634 Msa0936790:intron 30.0%
TTAAACCAATTAGTAGCATC+TGG + chr6_3:7726776-7726795 Msa0936790:intron 30.0%
TAAACCAATTAGTAGCATCT+GGG + chr6_3:7726777-7726796 Msa0936790:intron 30.0%
ATGTTATCAATCACAAATCG+CGG - chr6_3:7727016-7727035 None:intergenic 30.0%
AATAGTTAGTGTATCAATGG+TGG + chr6_3:7727134-7727153 Msa0936790:intron 30.0%
ATTCCTATTATATCCACCAT+AGG - chr6_3:7727211-7727230 None:intergenic 30.0%
! TGGTGGATATAATAGGAATT+AGG + chr6_3:7727212-7727231 Msa0936790:intron 30.0%
GACAAACATTTCATCTGAAA+AGG + chr6_3:7727336-7727355 Msa0936790:intron 30.0%
! GCTGAAATGATTAAGTCTTT+TGG + chr6_3:7727379-7727398 Msa0936790:intron 30.0%
ACTTGCTTGGAGTAAATATT+AGG + chr6_3:7727602-7727621 Msa0936790:intron 30.0%
TACTTATGCTAGAAGATTGT+TGG + chr6_3:7727784-7727803 Msa0936790:intron 30.0%
ACTTATGCTAGAAGATTGTT+GGG + chr6_3:7727785-7727804 Msa0936790:intron 30.0%
GGATTGAAAATTGGCATTAT+AGG - chr6_3:7727991-7728010 None:intergenic 30.0%
GTAGTAAGAGGATTGAAAAT+TGG - chr6_3:7728000-7728019 None:intergenic 30.0%
AAAGTGTGTTATGTAGTAAG+AGG - chr6_3:7728012-7728031 None:intergenic 30.0%
TGCTTTATCTTTGTCAACAT+TGG + chr6_3:7728066-7728085 Msa0936790:intron 30.0%
CTTTGTTGGAAAAATCATAC+AGG + chr6_3:7728200-7728219 Msa0936790:intron 30.0%
ATCAAAATTGATACGAGGTT+AGG - chr6_3:7728253-7728272 None:intergenic 30.0%
ATTTATCGTCACTAATCTCT+GGG + chr6_3:7728280-7728299 Msa0936790:intron 30.0%
CTATTTGTCTTACGTATCTT+GGG - chr6_3:7728962-7728981 None:intergenic 30.0%
TCTATTTGTCTTACGTATCT+TGG - chr6_3:7728963-7728982 None:intergenic 30.0%
GGATTTAATAAGGATGTGTT+TGG + chr6_3:7729081-7729100 Msa0936790:intron 30.0%
ACAAAAATCACATTGAGTTC+TGG - chr6_3:7729166-7729185 None:intergenic 30.0%
! AGAACTCAATGTGATTTTTG+TGG + chr6_3:7729165-7729184 Msa0936790:intron 30.0%
CTATTTCCTTGTATTCAGTA+AGG + chr6_3:7729312-7729331 Msa0936790:intron 30.0%
ACTGTTGGAAATGCAAATTT+CGG + chr6_3:7729482-7729501 Msa0936790:CDS 30.0%
TTAATCAATTTGTCCCAAGT+AGG + chr6_3:7729522-7729541 Msa0936790:CDS 30.0%
TAATCAATTTGTCCCAAGTA+GGG + chr6_3:7729523-7729542 Msa0936790:CDS 30.0%
TATTTAGCTGACAATTCTAC+TGG + chr6_3:7729611-7729630 Msa0936790:CDS 30.0%
! ATGACATATAGCCTTAGTAA+CGG + chr6_3:7729770-7729789 Msa0936790:CDS 30.0%
ATAAGGTTATGACAACATCA+TGG + chr6_3:7729906-7729925 Msa0936790:CDS 30.0%
TCAATATTTGAATTGAGACC+AGG - chr6_3:7730091-7730110 None:intergenic 30.0%
!! TTGGCATTTATTGATTCGAA+TGG - chr6_3:7730229-7730248 None:intergenic 30.0%
! AAACAACTCTTTTCATTTCC+AGG + chr6_3:7730561-7730580 Msa0936790:CDS 30.0%
! AACAACTCTTTTCATTTCCA+GGG + chr6_3:7730562-7730581 Msa0936790:CDS 30.0%
GTCAAAAATGGAAGGAAAAT+GGG - chr6_3:7730801-7730820 None:intergenic 30.0%
AGTCAAAAATGGAAGGAAAA+TGG - chr6_3:7730802-7730821 None:intergenic 30.0%
AAAGAAAGAAGATGAAGAGT+TGG + chr6_3:7731157-7731176 Msa0936790:CDS 30.0%
! CACATAATGCACATGTATTT+TGG - chr6_3:7731202-7731221 None:intergenic 30.0%
CAAAATACATGTGCATTATG+TGG + chr6_3:7731200-7731219 Msa0936790:CDS 30.0%
TGCATTTAGCATGAATAATG+GGG - chr6_3:7731340-7731359 None:intergenic 30.0%
CTGCATTTAGCATGAATAAT+GGG - chr6_3:7731341-7731360 None:intergenic 30.0%
TCTGCATTTAGCATGAATAA+TGG - chr6_3:7731342-7731361 None:intergenic 30.0%
! CAAAAACACGTTTTACCATT+GGG - chr6_3:7731646-7731665 None:intergenic 30.0%
! CAATGGTAAAACGTGTTTTT+GGG + chr6_3:7731645-7731664 Msa0936790:intron 30.0%
!! AATGGTAAAACGTGTTTTTG+GGG + chr6_3:7731646-7731665 Msa0936790:intron 30.0%
TTTGCAAAACATGACATAGA+AGG - chr6_3:7731801-7731820 None:intergenic 30.0%
! TATGTCATGTTTTGCAAATG+TGG + chr6_3:7731803-7731822 Msa0936790:intron 30.0%
! TTTTGCAAATGTGGATATCA+TGG + chr6_3:7731812-7731831 Msa0936790:intron 30.0%
GAAGTTAGCAGTGATTAAAT+AGG - chr6_3:7731918-7731937 None:intergenic 30.0%
TAAGTTACAGTGGACAAAAA+TGG - chr6_3:7732074-7732093 None:intergenic 30.0%
ATGTACATAATTTAGGCAAG+AGG - chr6_3:7732165-7732184 None:intergenic 30.0%
!!! CTTTTACATTATTTCTGGGA+TGG + chr6_3:7732303-7732322 Msa0936790:three_prime_UTR 30.0%
ATTCAAACAGTAAATGCTCA+TGG - chr6_3:7732381-7732400 None:intergenic 30.0%
CATCAATGCACCATTTATAT+TGG - chr6_3:7732412-7732431 None:intergenic 30.0%
! ATAAATGGTGCATTGATGAA+TGG + chr6_3:7732414-7732433 Msa0936790:three_prime_UTR 30.0%
GGGGGAAAATGAAACATTAA+GGG - chr6_3:7726133-7726152 None:intergenic 35.0%
TGGGGGAAAATGAAACATTA+AGG - chr6_3:7726134-7726153 None:intergenic 35.0%
!!! AGGGTTAGGGTTTTGAATTT+GGG - chr6_3:7726153-7726172 None:intergenic 35.0%
!!! TAGGGTTAGGGTTTTGAATT+TGG - chr6_3:7726154-7726173 None:intergenic 35.0%
TGAGAGAGAAATTAGGGTTA+GGG - chr6_3:7726166-7726185 None:intergenic 35.0%
TTGAGAGAGAAATTAGGGTT+AGG - chr6_3:7726167-7726186 None:intergenic 35.0%
GGGTGTGAAATTGAGAAATT+GGG - chr6_3:7726194-7726213 None:intergenic 35.0%
TTGAACAATCTCATTGCTCA+TGG - chr6_3:7726219-7726238 None:intergenic 35.0%
CAACATCGTAATCATGCTAA+AGG + chr6_3:7726425-7726444 Msa0936790:CDS 35.0%
TATTTGCAACCGTATTGTTG+AGG + chr6_3:7726460-7726479 Msa0936790:CDS 35.0%
! GTGTGGAATTTTACAAAAGG+GGG - chr6_3:7726501-7726520 None:intergenic 35.0%
! GGTGTGGAATTTTACAAAAG+GGG - chr6_3:7726502-7726521 None:intergenic 35.0%
TCTTAATCTGAACAATGGTG+TGG - chr6_3:7726518-7726537 None:intergenic 35.0%
CTGGGCAATTGAAAATGATA+AGG + chr6_3:7726795-7726814 Msa0936790:intron 35.0%
TTAAACGAAATTATGAGCCC+TGG - chr6_3:7727170-7727189 None:intergenic 35.0%
! ATATGAGTTACCTGGGTTTT+AGG + chr6_3:7727483-7727502 Msa0936790:intron 35.0%
AACATTAGCGTATACTTGCT+TGG + chr6_3:7727589-7727608 Msa0936790:intron 35.0%
TTTAGACAAGCTGTTAACCA+AGG + chr6_3:7727756-7727775 Msa0936790:intron 35.0%
ATGTCATCTAACTGACTGTT+AGG + chr6_3:7727819-7727838 Msa0936790:intron 35.0%
CGAACTGGTAAGAATATGTT+AGG - chr6_3:7727923-7727942 None:intergenic 35.0%
! GAAAATGATAAGTGGTGATG+AGG - chr6_3:7727960-7727979 None:intergenic 35.0%
! AGGGACTCTTACAAAAGTAT+TGG + chr6_3:7728220-7728239 Msa0936790:intron 35.0%
GATTTATCGTCACTAATCTC+TGG + chr6_3:7728279-7728298 Msa0936790:intron 35.0%
TCTGGGAACTTTGTAAGAAT+TGG + chr6_3:7728297-7728316 Msa0936790:intron 35.0%
! GCATGATGAGTTATGTGTTT+TGG - chr6_3:7728370-7728389 None:intergenic 35.0%
ATTGGAGACCATACAAATAG+CGG - chr6_3:7728530-7728549 None:intergenic 35.0%
GACAGTATTGTGAAGAATGT+TGG + chr6_3:7728606-7728625 Msa0936790:CDS 35.0%
!! AGAAGTATCGAACATATTCC+TGG - chr6_3:7728632-7728651 None:intergenic 35.0%
! TATAGTTCTATTGTCTGCCT+AGG + chr6_3:7728725-7728744 Msa0936790:intron 35.0%
CCTGATGGTTGATTATTAAC+TGG - chr6_3:7728882-7728901 None:intergenic 35.0%
CCAGTTAATAATCAACCATC+AGG + chr6_3:7728879-7728898 Msa0936790:CDS 35.0%
TTAACATGTATCCCATGAGT+TGG - chr6_3:7728939-7728958 None:intergenic 35.0%
! GTAAGGAGTACAGATTTGAA+GGG - chr6_3:7729024-7729043 None:intergenic 35.0%
! TGTAAGGAGTACAGATTTGA+AGG - chr6_3:7729025-7729044 None:intergenic 35.0%
AACTGCATCTCATTTAGTTG+CGG + chr6_3:7729060-7729079 Msa0936790:intron 35.0%
CAAAGTCCTTACTGAATACA+AGG - chr6_3:7729321-7729340 None:intergenic 35.0%
GACTTTGTTCTACATGAAAC+TGG + chr6_3:7729334-7729353 Msa0936790:intron 35.0%
CTATCAATTCCAATTCTTGG+TGG - chr6_3:7729566-7729585 None:intergenic 35.0%
CACCAAGAATTGGAATTGAT+AGG + chr6_3:7729564-7729583 Msa0936790:CDS 35.0%
TGCCTATCAATTCCAATTCT+TGG - chr6_3:7729569-7729588 None:intergenic 35.0%
GTTGATTATGGCCTAGTTAA+AGG + chr6_3:7729668-7729687 Msa0936790:CDS 35.0%
TATGGCCTAGTTAAAGGATT+AGG + chr6_3:7729674-7729693 Msa0936790:CDS 35.0%
CTCTACCTAATCCTTTAACT+AGG - chr6_3:7729682-7729701 None:intergenic 35.0%
GGATAGAAATGGTATGGATA+AGG + chr6_3:7729889-7729908 Msa0936790:CDS 35.0%
GGAAATATAGGAGTTATGCT+GGG - chr6_3:7730184-7730203 None:intergenic 35.0%
TGGAAATATAGGAGTTATGC+TGG - chr6_3:7730185-7730204 None:intergenic 35.0%
GGATTCTTCGATGGAAATAT+AGG - chr6_3:7730196-7730215 None:intergenic 35.0%
ATGACTCACAATGGTACTAT+TGG - chr6_3:7730248-7730267 None:intergenic 35.0%
AATAGTACCATTGTGAGTCA+TGG + chr6_3:7730247-7730266 Msa0936790:CDS 35.0%
AATTAGACCATGACTCACAA+TGG - chr6_3:7730257-7730276 None:intergenic 35.0%
CAGCGTCACAATTTACTTAT+AGG + chr6_3:7730446-7730465 Msa0936790:CDS 35.0%
! AAGAGTTGTTTCCGATTCTT+TGG - chr6_3:7730552-7730571 None:intergenic 35.0%
TAGATTTCGTTACCTGTGAA+GGG - chr6_3:7730753-7730772 None:intergenic 35.0%
ATAGATTTCGTTACCTGTGA+AGG - chr6_3:7730754-7730773 None:intergenic 35.0%
TCTAGGAAGATTACCGTATA+AGG - chr6_3:7730928-7730947 None:intergenic 35.0%
!! GCTTACGGTTTTTAGACATA+CGG - chr6_3:7731028-7731047 None:intergenic 35.0%
! ATCTTCTTTCTTTTCCTCAG+TGG - chr6_3:7731150-7731169 None:intergenic 35.0%
! ATTATGTGGAGAACCTTTTG+AGG + chr6_3:7731214-7731233 Msa0936790:CDS 35.0%
TCACTGTAAAACTCCTCAAA+AGG - chr6_3:7731230-7731249 None:intergenic 35.0%
! GGAGTTTTACAGTGATGAAA+CGG + chr6_3:7731235-7731254 Msa0936790:CDS 35.0%
TTATTCCATTAGGCGCATTA+AGG - chr6_3:7731289-7731308 None:intergenic 35.0%
! ATGCCTGTTGTTATTCCATT+AGG - chr6_3:7731299-7731318 None:intergenic 35.0%
TCCATCACAAAATCTTCAGA+CGG - chr6_3:7731377-7731396 None:intergenic 35.0%
!!! AAGATTTTGTGATGGACGAA+GGG + chr6_3:7731381-7731400 Msa0936790:CDS 35.0%
! CCAAAAACACGTTTTACCAT+TGG - chr6_3:7731647-7731666 None:intergenic 35.0%
! CCAATGGTAAAACGTGTTTT+TGG + chr6_3:7731644-7731663 Msa0936790:intron 35.0%
!!! ATGGTAAAACGTGTTTTTGG+GGG + chr6_3:7731647-7731666 Msa0936790:intron 35.0%
TCACAATAGATTGCAACACT+AGG + chr6_3:7731836-7731855 Msa0936790:intron 35.0%
CCACTGTAACTTATGAGTTT+CGG + chr6_3:7732081-7732100 Msa0936790:three_prime_UTR 35.0%
!! GCAGAATCTTCTGAAATACA+TGG + chr6_3:7732139-7732158 Msa0936790:three_prime_UTR 35.0%
GTAAGGAACTGAAAATTTGC+AGG - chr6_3:7732245-7732264 None:intergenic 35.0%
!!! AGATTTTTTGGGGACAGTAA+AGG - chr6_3:7732267-7732286 None:intergenic 35.0%
!!! GGTTAGGGTTTTGAATTTGG+GGG - chr6_3:7726151-7726170 None:intergenic 40.0%
!!! GGGTTAGGGTTTTGAATTTG+GGG - chr6_3:7726152-7726171 None:intergenic 40.0%
GGGGTGTGAAATTGAGAAAT+TGG - chr6_3:7726195-7726214 None:intergenic 40.0%
ACAATCTCATTGCTCATGGT+GGG - chr6_3:7726215-7726234 None:intergenic 40.0%
AACAATCTCATTGCTCATGG+TGG - chr6_3:7726216-7726235 None:intergenic 40.0%
!! TTTGATGGGTGTCACAGTTT+TGG + chr6_3:7726666-7726685 Msa0936790:intron 40.0%
ATTGCCCAGATGCTACTAAT+TGG - chr6_3:7726784-7726803 None:intergenic 40.0%
TGAACGATGCTGTCAAATAC+CGG + chr6_3:7726858-7726877 Msa0936790:intron 40.0%
CAATCACAAATCGCGGAAAA+CGG - chr6_3:7727009-7727028 None:intergenic 40.0%
!! AATGGTGGATTATAGAAGCC+AGG + chr6_3:7727149-7727168 Msa0936790:intron 40.0%
!! ATGGTGGATTATAGAAGCCA+GGG + chr6_3:7727150-7727169 Msa0936790:intron 40.0%
! ATAATGGGGTTTATGGCCTA+TGG + chr6_3:7727192-7727211 Msa0936790:intron 40.0%
!! TGGCCTATGGTGGATATAAT+AGG + chr6_3:7727205-7727224 Msa0936790:intron 40.0%
TTAGGAATTCAGGACGATGA+TGG + chr6_3:7727230-7727249 Msa0936790:intron 40.0%
TACTGTATTCCAACTTGAGC+AGG - chr6_3:7727408-7727427 None:intergenic 40.0%
GATGATAAGCTGTGAGGATT+TGG - chr6_3:7727433-7727452 None:intergenic 40.0%
AACTCAGATGATAAGCTGTG+AGG - chr6_3:7727439-7727458 None:intergenic 40.0%
TGCGTGTTATATGAGTTACC+TGG + chr6_3:7727475-7727494 Msa0936790:intron 40.0%
GCGTGTTATATGAGTTACCT+GGG + chr6_3:7727476-7727495 Msa0936790:intron 40.0%
CTAGCATAAGTACACAACCT+TGG - chr6_3:7727776-7727795 None:intergenic 40.0%
ACATGCCACTAAGTTTAGTG+TGG + chr6_3:7728405-7728424 Msa0936790:intron 40.0%
AGTCTCCACACTAAACTTAG+TGG - chr6_3:7728413-7728432 None:intergenic 40.0%
ACTAAGTTTAGTGTGGAGAC+TGG + chr6_3:7728412-7728431 Msa0936790:intron 40.0%
TCGAATCTCCGCTATTTGTA+TGG + chr6_3:7728519-7728538 Msa0936790:intron 40.0%
TATTGTGAAGAATGTTGGCC+AGG + chr6_3:7728611-7728630 Msa0936790:CDS 40.0%
CGCATAGCAGAATGTAAACT+TGG - chr6_3:7728780-7728799 None:intergenic 40.0%
TCAATCTTCCGTAAGACAGA+AGG - chr6_3:7728837-7728856 None:intergenic 40.0%
ATCAGGCGTTAATTCCCTTA+GGG + chr6_3:7728896-7728915 Msa0936790:CDS 40.0%
AAGAGTTCTCTGTTGCTAGA+GGG - chr6_3:7729381-7729400 None:intergenic 40.0%
GATGTATTCTGACAGTGTGT+TGG + chr6_3:7729415-7729434 Msa0936790:intron 40.0%
TTAGACTCAACAGGAACTGT+TGG + chr6_3:7729467-7729486 Msa0936790:CDS 40.0%
AAGATCTTCCAACCCTACTT+GGG - chr6_3:7729538-7729557 None:intergenic 40.0%
TAGGCATATGCCCTCATATA+TGG + chr6_3:7729583-7729602 Msa0936790:CDS 40.0%
TAGCTGACAATTCTACTGGT+AGG + chr6_3:7729615-7729634 Msa0936790:CDS 40.0%
CCATAATCAACAGCATGATG+GGG - chr6_3:7729659-7729678 None:intergenic 40.0%
GCCATAATCAACAGCATGAT+GGG - chr6_3:7729660-7729679 None:intergenic 40.0%
TTCCGACTATCACCAGAAAA+CGG - chr6_3:7729734-7729753 None:intergenic 40.0%
TAGGCATCAATTAGTGCTCT+TGG - chr6_3:7729812-7729831 None:intergenic 40.0%
! AGAGCACTAATTGATGCCTA+TGG + chr6_3:7729812-7729831 Msa0936790:CDS 40.0%
!! TTGGCTTTTGTCACTACCAT+AGG - chr6_3:7729831-7729850 None:intergenic 40.0%
GACAAAAGCCAAGAAACTTC+TGG + chr6_3:7729839-7729858 Msa0936790:CDS 40.0%
GTAAGCCTTTGTTAGTTGAG+CGG + chr6_3:7729864-7729883 Msa0936790:CDS 40.0%
ATCATGGCAGAATACTGAAG+AGG + chr6_3:7729922-7729941 Msa0936790:CDS 40.0%
GTAGACCATGGTAGAAGTAA+TGG + chr6_3:7729980-7729999 Msa0936790:CDS 40.0%
GGAAACCATTACTTCTACCA+TGG - chr6_3:7729988-7730007 None:intergenic 40.0%
TGACACTGAAGAAGTTGCAT+TGG - chr6_3:7730059-7730078 None:intergenic 40.0%
ATGCAACTTCTTCAGTGTCA+AGG + chr6_3:7730059-7730078 Msa0936790:CDS 40.0%
TGCAACTTCTTCAGTGTCAA+GGG + chr6_3:7730060-7730079 Msa0936790:CDS 40.0%
AATATAGGAGTTATGCTGGG+AGG - chr6_3:7730181-7730200 None:intergenic 40.0%
TTCCATCGAAGAATCCTGTT+AGG + chr6_3:7730200-7730219 Msa0936790:CDS 40.0%
TTCCTAACAGGATTCTTCGA+TGG - chr6_3:7730205-7730224 None:intergenic 40.0%
! GATTCGAATGGATTCCTAAC+AGG - chr6_3:7730217-7730236 None:intergenic 40.0%
GATTGTTCATGCACAGGAAA+AGG - chr6_3:7730286-7730305 None:intergenic 40.0%
GGTGGAAAAAACTGGAATGA+CGG - chr6_3:7730415-7730434 None:intergenic 40.0%
!!! ATTCCAGTTTTTTCCACCTC+AGG + chr6_3:7730417-7730436 Msa0936790:CDS 40.0%
TAAGTAAATTGTGACGCTGC+TGG - chr6_3:7730445-7730464 None:intergenic 40.0%
! AACTCTTTTCATTTCCAGGG+AGG + chr6_3:7730565-7730584 Msa0936790:CDS 40.0%
!! GGTACAAATGGACTAGGATT+GGG - chr6_3:7730649-7730668 None:intergenic 40.0%
!! TGGTACAAATGGACTAGGAT+TGG - chr6_3:7730650-7730669 None:intergenic 40.0%
AATATCCAACAGTTGGCTGT+TGG - chr6_3:7730675-7730694 None:intergenic 40.0%
ATTAATTCACTCATGGCCCA+AGG + chr6_3:7730703-7730722 Msa0936790:CDS 40.0%
AGCCAATGAGATTACACCTT+GGG - chr6_3:7730722-7730741 None:intergenic 40.0%
TAGCCAATGAGATTACACCT+TGG - chr6_3:7730723-7730742 None:intergenic 40.0%
AGATTTCGTTACCTGTGAAG+GGG - chr6_3:7730752-7730771 None:intergenic 40.0%
GCAAGCAAGTCAAAAATGGA+AGG - chr6_3:7730809-7730828 None:intergenic 40.0%
GTTCGCAAGCAAGTCAAAAA+TGG - chr6_3:7730813-7730832 None:intergenic 40.0%
GTTTGATCCAGATACTCTGA+AGG + chr6_3:7730878-7730897 Msa0936790:CDS 40.0%
TCTGCAATCAGTGCCTTATA+CGG + chr6_3:7730912-7730931 Msa0936790:CDS 40.0%
CTCACAAACCATTTACGAGA+GGG - chr6_3:7731056-7731075 None:intergenic 40.0%
ACTCACAAACCATTTACGAG+AGG - chr6_3:7731057-7731076 None:intergenic 40.0%
CAAAAAACCTGGAGCTGATT+CGG - chr6_3:7731117-7731136 None:intergenic 40.0%
!!! ACATGTATTTTGGTCCTCGT+CGG - chr6_3:7731192-7731211 None:intergenic 40.0%
! GTTTTACAGTGATGAAACGG+AGG + chr6_3:7731238-7731257 Msa0936790:CDS 40.0%
GTATACCTTAATGCGCCTAA+TGG + chr6_3:7731281-7731300 Msa0936790:CDS 40.0%
GAATAACAACAGGCATAGAC+AGG + chr6_3:7731303-7731322 Msa0936790:CDS 40.0%
CATCACAAAATCTTCAGACG+GGG - chr6_3:7731375-7731394 None:intergenic 40.0%
CCATCACAAAATCTTCAGAC+GGG - chr6_3:7731376-7731395 None:intergenic 40.0%
!!! GAAGATTTTGTGATGGACGA+AGG + chr6_3:7731380-7731399 Msa0936790:CDS 40.0%
!!! AGATTTTGTGATGGACGAAG+GGG + chr6_3:7731382-7731401 Msa0936790:CDS 40.0%
ATAACATGACTGCCGAATTC+TGG - chr6_3:7731679-7731698 None:intergenic 40.0%
! CGGCAGTCATGTTATTCTTT+TGG + chr6_3:7731684-7731703 Msa0936790:intron 40.0%
GCAAAACATGACATAGAAGG+CGG - chr6_3:7731798-7731817 None:intergenic 40.0%
TGCTTGAAAAACATCAGCAC+TGG - chr6_3:7731958-7731977 None:intergenic 40.0%
TTGTTTCCCTCTTTCTATGC+AGG + chr6_3:7731994-7732013 Msa0936790:intron 40.0%
TGTTTCCCTCTTTCTATGCA+GGG + chr6_3:7731995-7732014 Msa0936790:intron 40.0%
TCTTTGACTGCCTTCTTCAT+AGG - chr6_3:7732023-7732042 None:intergenic 40.0%
GCAGTCAAAGAAAACGAATG+CGG + chr6_3:7732032-7732051 Msa0936790:CDS 40.0%
CCGAAACTCATAAGTTACAG+TGG - chr6_3:7732084-7732103 None:intergenic 40.0%
!! TTTTGGGGACAGTAAAGGTA+AGG - chr6_3:7732262-7732281 None:intergenic 40.0%
GGATCCATGAGCATTTACAA+AGG + chr6_3:7732353-7732372 Msa0936790:three_prime_UTR 40.0%
GGATCCTTTGTAAATGCTCA+TGG - chr6_3:7732360-7732379 None:intergenic 40.0%
CAATCTCATTGCTCATGGTG+GGG - chr6_3:7726214-7726233 None:intergenic 45.0%
AATCGACCAACGAGGATTGA+TGG - chr6_3:7726251-7726270 None:intergenic 45.0%
! AATCCTCGTTGGTCGATTCA+AGG + chr6_3:7726253-7726272 Msa0936790:CDS 45.0%
AACGTCGTGAAGAAGATCCT+CGG + chr6_3:7726288-7726307 Msa0936790:CDS 45.0%
! AAATACCGGCTATAGCGTAG+CGG + chr6_3:7726872-7726891 Msa0936790:intron 45.0%
AAATTCCGCTACGCTATAGC+CGG - chr6_3:7726880-7726899 None:intergenic 45.0%
! CTATGCTACAGTGCTGCTAT+AGG - chr6_3:7726968-7726987 None:intergenic 45.0%
ATAGCAGCACTGTAGCATAG+AGG + chr6_3:7726968-7726987 Msa0936790:intron 45.0%
ACAACCATGTTGTACTGCCT+TGG + chr6_3:7727258-7727277 Msa0936790:intron 45.0%
GTGTTGTCAAATTGCCACCA+AGG - chr6_3:7727278-7727297 None:intergenic 45.0%
! TTTTGGCAACCTGCTCAAGT+TGG + chr6_3:7727396-7727415 Msa0936790:intron 45.0%
CTACAAGCAACCTAAAACCC+AGG - chr6_3:7727496-7727515 None:intergenic 45.0%
! CTAGAAGATTGTTGGGTTGC+TGG + chr6_3:7727792-7727811 Msa0936790:intron 45.0%
GTCAACATTGGCAATCTCAG+AGG + chr6_3:7728078-7728097 Msa0936790:intron 45.0%
AAGTTTAGTGTGGAGACTGG+AGG + chr6_3:7728415-7728434 Msa0936790:intron 45.0%
GCTTCCTTCACTCTATCTCT+TGG + chr6_3:7728584-7728603 Msa0936790:CDS 45.0%
CTGTCCAAGAGATAGAGTGA+AGG - chr6_3:7728591-7728610 None:intergenic 45.0%
TCTGCTATGCGACATCTCTT+TGG + chr6_3:7728789-7728808 Msa0936790:CDS 45.0%
TCTTCCCTCCTTCTGTCTTA+CGG + chr6_3:7728826-7728845 Msa0936790:CDS 45.0%
TCTTCCGTAAGACAGAAGGA+GGG - chr6_3:7728833-7728852 None:intergenic 45.0%
ATCTTCCGTAAGACAGAAGG+AGG - chr6_3:7728834-7728853 None:intergenic 45.0%
TGTCTTACGGAAGATTGACG+TGG + chr6_3:7728839-7728858 Msa0936790:CDS 45.0%
CTAAGGGAATTAACGCCTGA+TGG - chr6_3:7728897-7728916 None:intergenic 45.0%
CATCAGGCGTTAATTCCCTT+AGG + chr6_3:7728895-7728914 Msa0936790:CDS 45.0%
AGGAGATTCAGAAGCCCTAA+GGG - chr6_3:7728913-7728932 None:intergenic 45.0%
AATCTCCTCGACCAACTCAT+GGG + chr6_3:7728925-7728944 Msa0936790:CDS 45.0%
CAAGAGTTCTCTGTTGCTAG+AGG - chr6_3:7729382-7729401 None:intergenic 45.0%
!! TGTGTTGGTTTCATCCTCAC+AGG + chr6_3:7729430-7729449 Msa0936790:intron 45.0%
GGTGAAAGGTTAGACTCAAC+AGG + chr6_3:7729458-7729477 Msa0936790:CDS 45.0%
CAATTTGTCCCAAGTAGGGT+TGG + chr6_3:7729527-7729546 Msa0936790:CDS 45.0%
GAAGATCTTCCAACCCTACT+TGG - chr6_3:7729539-7729558 None:intergenic 45.0%
TCTTCGTCACCACCAAGAAT+TGG + chr6_3:7729554-7729573 Msa0936790:CDS 45.0%
! CCCCATCATGCTGTTGATTA+TGG + chr6_3:7729656-7729675 Msa0936790:CDS 45.0%
GGCCATAATCAACAGCATGA+TGG - chr6_3:7729661-7729680 None:intergenic 45.0%
GAGAAGAAGAGTTGAGTGAG+TGG + chr6_3:7729699-7729718 Msa0936790:CDS 45.0%
!! AGCCGTTTTCTGGTGATAGT+CGG + chr6_3:7729729-7729748 Msa0936790:CDS 45.0%
!! AGTGCTCTTGGATTTTGACG+TGG - chr6_3:7729800-7729819 None:intergenic 45.0%
GCTTACTGCCAGAAGTTTCT+TGG - chr6_3:7729850-7729869 None:intergenic 45.0%
ATGGCAGAATACTGAAGAGG+AGG + chr6_3:7729925-7729944 Msa0936790:CDS 45.0%
TGAAGAGGAGGAGTTCGATT+GGG + chr6_3:7729937-7729956 Msa0936790:CDS 45.0%
AGTCCTACAGTAGTAGACCA+TGG + chr6_3:7729968-7729987 Msa0936790:CDS 45.0%
CTACCATGGTCTACTACTGT+AGG - chr6_3:7729974-7729993 None:intergenic 45.0%
GGTTTCCTGCAACCAACTAT+CGG + chr6_3:7730001-7730020 Msa0936790:CDS 45.0%
TCAAAAGCTGCAGGCAAAAC+TGG - chr6_3:7730124-7730143 None:intergenic 45.0%
!!! TGCCTGCAGCTTTTGAAATG+AGG + chr6_3:7730128-7730147 Msa0936790:CDS 45.0%
TGCCTCATTTCAAAAGCTGC+AGG - chr6_3:7730133-7730152 None:intergenic 45.0%
ACGTGGAGCATGCACATTTA+CGG - chr6_3:7730158-7730177 None:intergenic 45.0%
TGCAACGATTGTTCATGCAC+AGG - chr6_3:7730292-7730311 None:intergenic 45.0%
GTGCATGAACAATCGTTGCA+CGG + chr6_3:7730292-7730311 Msa0936790:CDS 45.0%
GCTGATTAGGTAGCTGATAC+AGG - chr6_3:7730348-7730367 None:intergenic 45.0%
ATCAGACCAGGAAGCTGATT+AGG - chr6_3:7730361-7730380 None:intergenic 45.0%
GGGTTAGATGAAATCAGACC+AGG - chr6_3:7730373-7730392 None:intergenic 45.0%
GTGTTTGTACACTGTTTGGC+GGG - chr6_3:7730393-7730412 None:intergenic 45.0%
GGTGTTTGTACACTGTTTGG+CGG - chr6_3:7730394-7730413 None:intergenic 45.0%
GACGGTGTTTGTACACTGTT+TGG - chr6_3:7730397-7730416 None:intergenic 45.0%
GATCCTGAGGTGGAAAAAAC+TGG - chr6_3:7730423-7730442 None:intergenic 45.0%
ACTTATAGGCCATCTTTGCC+AGG + chr6_3:7730460-7730479 Msa0936790:CDS 45.0%
AACAGGTCGTACATTTGGCA+GGG - chr6_3:7730509-7730528 None:intergenic 45.0%
TAACAGGTCGTACATTTGGC+AGG - chr6_3:7730510-7730529 None:intergenic 45.0%
GGCATAACAGGTCGTACATT+TGG - chr6_3:7730514-7730533 None:intergenic 45.0%
TTGTTTCCGATTCTTTGGCC+TGG - chr6_3:7730547-7730566 None:intergenic 45.0%
!! AATGGACTAGGATTGGGATG+AGG - chr6_3:7730643-7730662 None:intergenic 45.0%
!! TGGCTTGGTACAAATGGACT+AGG - chr6_3:7730655-7730674 None:intergenic 45.0%
! TGACGAACCTTCAGAGTATC+TGG - chr6_3:7730888-7730907 None:intergenic 45.0%
GCTCGTCTTGGGATTTGAAT+CGG - chr6_3:7730971-7730990 None:intergenic 45.0%
GTCTCAGTTGGCAAAAAACC+TGG - chr6_3:7731128-7731147 None:intergenic 45.0%
! TTTTCCTCAGTGGTCTCAGT+TGG - chr6_3:7731140-7731159 None:intergenic 45.0%
AGATGAAGAGTTGGCTGTTC+CGG + chr6_3:7731166-7731185 Msa0936790:CDS 45.0%
GCGCCTAATGGAATAACAAC+AGG + chr6_3:7731293-7731312 Msa0936790:CDS 45.0%
! CCCGTCTGAAGATTTTGTGA+TGG + chr6_3:7731373-7731392 Msa0936790:CDS 45.0%
AAACATGACATAGAAGGCGG+CGG - chr6_3:7731795-7731814 None:intergenic 45.0%
ATAGATTGCAACACTAGGCG+TGG + chr6_3:7731841-7731860 Msa0936790:intron 45.0%
TGGGATGGAGCAGTAATTAC+TGG + chr6_3:7732318-7732337 Msa0936790:three_prime_UTR 45.0%
GGGATGGAGCAGTAATTACT+GGG + chr6_3:7732319-7732338 Msa0936790:three_prime_UTR 45.0%
GGATGGAGCAGTAATTACTG+GGG + chr6_3:7732320-7732339 Msa0936790:three_prime_UTR 45.0%
AGCAGTAATTACTGGGGACA+TGG + chr6_3:7732326-7732345 Msa0936790:three_prime_UTR 45.0%
AATTACTGGGGACATGGCAA+AGG + chr6_3:7732332-7732351 Msa0936790:three_prime_UTR 45.0%
!!! ATAATATATCTAATTTTTAA+AGG + chr6_3:7727308-7727327 Msa0936790:intron 5.0%
!! ATTTAAAAAAAAAAAAACTT+AGG - chr6_3:7730777-7730796 None:intergenic 5.0%
AAGCCTTGAATCGACCAACG+AGG - chr6_3:7726259-7726278 None:intergenic 50.0%
GGTTGCGAATTTCTCAACCG+AGG - chr6_3:7726308-7726327 None:intergenic 50.0%
TCACAAATCGCGGAAAACGG+TGG - chr6_3:7727006-7727025 None:intergenic 50.0%
ATGGGGTTTATGGCCTATGG+TGG + chr6_3:7727195-7727214 Msa0936790:intron 50.0%
ACCATGTTGTACTGCCTTGG+TGG + chr6_3:7727261-7727280 Msa0936790:intron 50.0%
! GATAAGTGGTGATGAGGCCT+GGG - chr6_3:7727954-7727973 None:intergenic 50.0%
! TGATAAGTGGTGATGAGGCC+TGG - chr6_3:7727955-7727974 None:intergenic 50.0%
TAACCTACTTCGGGTAGACG+CGG - chr6_3:7728657-7728676 None:intergenic 50.0%
GTATGCCACGCAGAAAACCT+AGG - chr6_3:7728745-7728764 None:intergenic 50.0%
TGCGACATCTCTTTGGTACC+TGG + chr6_3:7728796-7728815 Msa0936790:CDS 50.0%
! AGGAGGGAAGACTTTTGACC+AGG - chr6_3:7728817-7728836 None:intergenic 50.0%
GAGGAGATTCAGAAGCCCTA+AGG - chr6_3:7728914-7728933 None:intergenic 50.0%
GAATCTCCTCGACCAACTCA+TGG + chr6_3:7728924-7728943 Msa0936790:CDS 50.0%
!! TGTATCCCATGAGTTGGTCG+AGG - chr6_3:7728933-7728952 None:intergenic 50.0%
GTTTCATCCTCACAGGTTGC+AGG + chr6_3:7729437-7729456 Msa0936790:intron 50.0%
GACGTGGTTGTCCGTTACTA+AGG - chr6_3:7729784-7729803 None:intergenic 50.0%
TCCAGCCGCTCAACTAACAA+AGG - chr6_3:7729872-7729891 None:intergenic 50.0%
GTTGAGCGGCTGGATAGAAA+TGG + chr6_3:7729878-7729897 Msa0936790:CDS 50.0%
GCGGCTGGATAGAAATGGTA+TGG + chr6_3:7729883-7729902 Msa0936790:CDS 50.0%
CTGAAGAGGAGGAGTTCGAT+TGG + chr6_3:7729936-7729955 Msa0936790:CDS 50.0%
!! GCATTGGCTGCAACAGTAAC+AGG - chr6_3:7730043-7730062 None:intergenic 50.0%
!! TCAGTGTCAAGGGTGTTTCC+TGG + chr6_3:7730070-7730089 Msa0936790:CDS 50.0%
AAAGCTGCAGGCAAAACTGG+TGG - chr6_3:7730121-7730140 None:intergenic 50.0%
CAGCTACCTAATCAGCTTCC+TGG + chr6_3:7730352-7730371 Msa0936790:CDS 50.0%
ACAGGTCGTACATTTGGCAG+GGG - chr6_3:7730508-7730527 None:intergenic 50.0%
CGATTCTTTGGCCTGGCAAA+GGG - chr6_3:7730540-7730559 None:intergenic 50.0%
CCTTTGCCAGGCCAAAGAAT+CGG + chr6_3:7730538-7730557 Msa0936790:CDS 50.0%
ATTGGGATGAGGTGGCATCT+GGG - chr6_3:7730632-7730651 None:intergenic 50.0%
!! GGCTGTTGGCTTGGTACAAA+TGG - chr6_3:7730661-7730680 None:intergenic 50.0%
GGCCCAAGGTGTAATCTCAT+TGG + chr6_3:7730717-7730736 Msa0936790:CDS 50.0%
CCACAAGTTGTGCACTGTCT+AGG - chr6_3:7730945-7730964 None:intergenic 50.0%
CCTAGACAGTGCACAACTTG+TGG + chr6_3:7730942-7730961 Msa0936790:CDS 50.0%
CGTCTTGGGATTTGAATCGG+AGG - chr6_3:7730968-7730987 None:intergenic 50.0%
AGCACAGCAGTCACATGGAT+TGG + chr6_3:7730988-7731007 Msa0936790:CDS 50.0%
TACGAGAGGGCTTCTGCTTA+CGG - chr6_3:7731043-7731062 None:intergenic 50.0%
AGCAGAAGCCCTCTCGTAAA+TGG + chr6_3:7731045-7731064 Msa0936790:CDS 50.0%
GGTTTGTGAGTGAGACGATG+TGG + chr6_3:7731066-7731085 Msa0936790:CDS 50.0%
AGTGAGACGATGTGGCTTAG+TGG + chr6_3:7731074-7731093 Msa0936790:CDS 50.0%
!! CTTAGTGGTGCAGAGGCATT+GGG + chr6_3:7731089-7731108 Msa0936790:CDS 50.0%
TTTGCCAACTGAGACCACTG+AGG + chr6_3:7731133-7731152 Msa0936790:CDS 50.0%
ACAGTGATGAAACGGAGGAG+TGG + chr6_3:7731243-7731262 Msa0936790:CDS 50.0%
ACGGAGGAGTGGATGTATAG+AGG + chr6_3:7731254-7731273 Msa0936790:CDS 50.0%
GGCATAGACAGGTCACAGTT+AGG + chr6_3:7731314-7731333 Msa0936790:CDS 50.0%
TGGGGGAGAGATCCAGAATT+CGG + chr6_3:7731664-7731683 Msa0936790:intron 50.0%
AGGTGCCCTGCATAGAAAGA+GGG - chr6_3:7732003-7732022 None:intergenic 50.0%
TAGGTGCCCTGCATAGAAAG+AGG - chr6_3:7732004-7732023 None:intergenic 50.0%
! ATGCAGGGCACCTATGAAGA+AGG + chr6_3:7732010-7732029 Msa0936790:intron 50.0%
!! CCAACGAGGATTGATGGTGG+AGG - chr6_3:7726245-7726264 None:intergenic 55.0%
CCTCCACCATCAATCCTCGT+TGG + chr6_3:7726242-7726261 Msa0936790:CDS 55.0%
CGACCAACGAGGATTGATGG+TGG - chr6_3:7726248-7726267 None:intergenic 55.0%
GCCACCAAGGCAGTACAACA+TGG - chr6_3:7727265-7727284 None:intergenic 55.0%
! GTCTGCCTAGGTTTTCTGCG+TGG + chr6_3:7728737-7728756 Msa0936790:intron 55.0%
CCTTTCACCTGCAACCTGTG+AGG - chr6_3:7729447-7729466 None:intergenic 55.0%
CCTCACAGGTTGCAGGTGAA+AGG + chr6_3:7729444-7729463 Msa0936790:intron 55.0%
!! TGGTCGCGAAAGCCGTTTTC+TGG + chr6_3:7729719-7729738 Msa0936790:CDS 55.0%
GCCTTTGTTAGTTGAGCGGC+TGG + chr6_3:7729868-7729887 Msa0936790:CDS 55.0%
CTGCAGGCAAAACTGGTGGA+CGG - chr6_3:7730117-7730136 None:intergenic 55.0%
AGGCCATCTTTGCCAGGACA+TGG + chr6_3:7730466-7730485 Msa0936790:CDS 55.0%
GGACCATGTCCTGGCAAAGA+TGG - chr6_3:7730472-7730491 None:intergenic 55.0%
CTCATAGCAGGACCATGTCC+TGG - chr6_3:7730481-7730500 None:intergenic 55.0%
CAGGTCGTACATTTGGCAGG+GGG - chr6_3:7730507-7730526 None:intergenic 55.0%
! GGCAAAGGGAGAGGCATAAC+AGG - chr6_3:7730526-7730545 None:intergenic 55.0%
GTTATGCCTCTCCCTTTGCC+AGG + chr6_3:7730526-7730545 Msa0936790:CDS 55.0%
CCGATTCTTTGGCCTGGCAA+AGG - chr6_3:7730541-7730560 None:intergenic 55.0%
TTGCGACCTTTACCTCCACC+TGG + chr6_3:7730592-7730611 Msa0936790:CDS 55.0%
GATTGGGATGAGGTGGCATC+TGG - chr6_3:7730633-7730652 None:intergenic 55.0%
GGACTAGGATTGGGATGAGG+TGG - chr6_3:7730640-7730659 None:intergenic 55.0%
! CCAACAGTTGGCTGTTGGCT+TGG - chr6_3:7730670-7730689 None:intergenic 55.0%
CCAAGCCAACAGCCAACTGT+TGG + chr6_3:7730667-7730686 Msa0936790:CDS 55.0%
GGCTAATCAAGCCCCTTCAC+AGG + chr6_3:7730738-7730757 Msa0936790:CDS 55.0%
GTGACTGCTGTGCTCGTCTT+GGG - chr6_3:7730982-7731001 None:intergenic 55.0%
TGTGACTGCTGTGCTCGTCT+TGG - chr6_3:7730983-7731002 None:intergenic 55.0%
AGACGAGCACAGCAGTCACA+TGG + chr6_3:7730983-7731002 Msa0936790:CDS 55.0%
GATGTGGCTTAGTGGTGCAG+AGG + chr6_3:7731082-7731101 Msa0936790:CDS 55.0%
! GCTTAGTGGTGCAGAGGCAT+TGG + chr6_3:7731088-7731107 Msa0936790:CDS 55.0%
!!! GTATTTTGGTCCTCGTCGGC+CGG - chr6_3:7731188-7731207 None:intergenic 55.0%
ACCAGTTCGCGTTCTCTCCC+AGG + chr6_3:7727934-7727953 Msa0936790:intron 60.0%
TCACCGCGTCTACCCGAAGT+AGG + chr6_3:7728651-7728670 Msa0936790:intron 60.0%
GGAGTTATGCTGGGAGGACG+TGG - chr6_3:7730175-7730194 None:intergenic 60.0%
TGTGACGCTGCTGGATCCTG+AGG - chr6_3:7730436-7730455 None:intergenic 60.0%
GGCAGGGGGTTACTCATAGC+AGG - chr6_3:7730493-7730512 None:intergenic 60.0%
CTTTGGCCTGGCAAAGGGAG+AGG - chr6_3:7730535-7730554 None:intergenic 60.0%
AAGGTCGCAAAGCTCCTCCC+TGG - chr6_3:7730582-7730601 None:intergenic 60.0%
TGTGGGCCAGGTGGAGGTAA+AGG - chr6_3:7730601-7730620 None:intergenic 60.0%
! GCATCTGGGATGGAGCGTGT+GGG - chr6_3:7730618-7730637 None:intergenic 60.0%
GGATGAGGTGGCATCTGGGA+TGG - chr6_3:7730628-7730647 None:intergenic 60.0%
TTGGGAGCCGAATCAGCTCC+AGG + chr6_3:7731107-7731126 Msa0936790:CDS 60.0%
GCCTGGGAGAGAACGCGAAC+TGG - chr6_3:7727938-7727957 None:intergenic 65.0%
GACGCTGCTGGATCCTGAGG+TGG - chr6_3:7730433-7730452 None:intergenic 65.0%
! GGCATCTGGGATGGAGCGTG+TGG - chr6_3:7730619-7730638 None:intergenic 65.0%
GATGGAGCGTGTGGGCCAGG+TGG - chr6_3:7730610-7730629 None:intergenic 70.0%
TGGGATGGAGCGTGTGGGCC+AGG - chr6_3:7730613-7730632 None:intergenic 70.0%
GTTGGCTGTTCCGGCCGACG+AGG + chr6_3:7731175-7731194 Msa0936790:CDS 70.0%
GGAGCGTGTGGGCCAGGTGG+AGG - chr6_3:7730607-7730626 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 7726028 7732452 7726028 ID=Msa0936790;Name=Msa0936790
chr6_3 mRNA 7726028 7732452 7726028 ID=Msa0936790-mRNA-1;Parent=Msa0936790;Name=Msa0936790-mRNA-1;_AED=0.09;_eAED=0.09;_QI=190|1|1|1|1|1|6|392|840
chr6_3 exon 7726028 7726481 7726028 ID=Msa0936790-mRNA-1:exon:2550;Parent=Msa0936790-mRNA-1
chr6_3 exon 7728567 7728668 7728567 ID=Msa0936790-mRNA-1:exon:2551;Parent=Msa0936790-mRNA-1
chr6_3 exon 7728747 7729007 7728747 ID=Msa0936790-mRNA-1:exon:2552;Parent=Msa0936790-mRNA-1
chr6_3 exon 7729452 7730759 7729452 ID=Msa0936790-mRNA-1:exon:2553;Parent=Msa0936790-mRNA-1
chr6_3 exon 7730861 7731403 7730861 ID=Msa0936790-mRNA-1:exon:2554;Parent=Msa0936790-mRNA-1
chr6_3 exon 7732016 7732452 7732016 ID=Msa0936790-mRNA-1:exon:2555;Parent=Msa0936790-mRNA-1
chr6_3 five_prime_UTR 7726028 7726217 7726028 ID=Msa0936790-mRNA-1:five_prime_utr;Parent=Msa0936790-mRNA-1
chr6_3 CDS 7726218 7726481 7726218 ID=Msa0936790-mRNA-1:cds;Parent=Msa0936790-mRNA-1
chr6_3 CDS 7728567 7728668 7728567 ID=Msa0936790-mRNA-1:cds;Parent=Msa0936790-mRNA-1
chr6_3 CDS 7728747 7729007 7728747 ID=Msa0936790-mRNA-1:cds;Parent=Msa0936790-mRNA-1
chr6_3 CDS 7729452 7730759 7729452 ID=Msa0936790-mRNA-1:cds;Parent=Msa0936790-mRNA-1
chr6_3 CDS 7730861 7731403 7730861 ID=Msa0936790-mRNA-1:cds;Parent=Msa0936790-mRNA-1
chr6_3 CDS 7732016 7732060 7732016 ID=Msa0936790-mRNA-1:cds;Parent=Msa0936790-mRNA-1
chr6_3 three_prime_UTR 7732061 7732452 7732061 ID=Msa0936790-mRNA-1:three_prime_utr;Parent=Msa0936790-mRNA-1
Gene Sequence

>Msa0936790

ATGAGCAATGAGATTGTTCAAAAGCCTCCACCATCAATCCTCGTTGGTCGATTCAAGGCTTTGTTGAATCAACGTCGTGAAGAAGATCCTCGGTTGAGAAATTCGCAACCTTCAACAGAAGAAATTGTTCAGATTTACGAGCTTTTGTTGTCTGAACTCACGTGTAATGTTAAACCTATCATCACTGATCTTACTATCATTGCTGAACAACATCGTAATCATGCTAAAGGAATCGCTTTTGCTATTTGCAACCGTATTGTTGAGGTGTCTGCAGATCAAAAGCTTCCTTCACTCTATCTCTTGGACAGTATTGTGAAGAATGTTGGCCAGGAATATGTTCGATACTTCTCACCGCGTCTACCCGAAGTTTTCTGCGTGGCATACAGACAAGTTGATCCAAGTTTACATTCTGCTATGCGACATCTCTTTGGTACCTGGTCAAAAGTCTTCCCTCCTTCTGTCTTACGGAAGATTGACGTGGAATTGCAATTTTCTAAACCAGTTAATAATCAACCATCAGGCGTTAATTCCCTTAGGGCTTCTGAATCTCCTCGACCAACTCATGGGATACATGTTAACCCAAGATACGTAAGACAAATAGAACACTCTACTTCAGTTATTGATAGTGTTGCAGGTGAAAGGTTAGACTCAACAGGAACTGTTGGAAATGCAAATTTCGGTCTTCTTGCTAGTAAGATTAATCAATTTGTCCCAAGTAGGGTTGGAAGATCTTCGTCACCACCAAGAATTGGAATTGATAGGCATATGCCCTCATATATGGATGACTATTTAGCTGACAATTCTACTGGTAGGACAGTTGAGAGAGAATCTCCCCATCATGCTGTTGATTATGGCCTAGTTAAAGGATTAGGTAGAGAAGAAGAGTTGAGTGAGTGGTCGCGAAAGCCGTTTTCTGGTGATAGTCGGAAGAGATTTCAAACTTCTATGACATATAGCCTTAGTAACGGACAACCACGTCAAAATCCAAGAGCACTAATTGATGCCTATGGTAGTGACAAAAGCCAAGAAACTTCTGGCAGTAAGCCTTTGTTAGTTGAGCGGCTGGATAGAAATGGTATGGATAAGGTTATGACAACATCATGGCAGAATACTGAAGAGGAGGAGTTCGATTGGGAAGATATGAGTCCTACAGTAGTAGACCATGGTAGAAGTAATGGTTTCCTGCAACCAACTATCGGTTTCTCATCAGAAAAGCCTGTTACTGTTGCAGCCAATGCAACTTCTTCAGTGTCAAGGGTGTTTCCTGGTCTCAATTCAAATATTGAGTACCGTCCACCAGTTTTGCCTGCAGCTTTTGAAATGAGGCACTCCGTAAATGTGCATGCTCCACGTCCTCCCAGCATAACTCCTATATTTCCATCGAAGAATCCTGTTAGGAATCCATTCGAATCAATAAATGCCAATAGTACCATTGTGAGTCATGGTCTAATTAATAGACCTTTTCCTGTGCATGAACAATCGTTGCACGGTGTTGAGAACAATGATATCAATAAAAGAAACCTGTATCAGCTACCTAATCAGCTTCCTGGTCTGATTTCATCTAACCCGCCAAACAGTGTACAAACACCGTCATTCCAGTTTTTTCCACCTCAGGATCCAGCAGCGTCACAATTTACTTATAGGCCATCTTTGCCAGGACATGGTCCTGCTATGAGTAACCCCCTGCCAAATGTACGACCTGTTATGCCTCTCCCTTTGCCAGGCCAAAGAATCGGAAACAACTCTTTTCATTTCCAGGGAGGAGCTTTGCGACCTTTACCTCCACCTGGCCCACACGCTCCATCCCAGATGCCACCTCATCCCAATCCTAGTCCATTTGTACCAAGCCAACAGCCAACTGTTGGATATTCTAATTTGATTAATTCACTCATGGCCCAAGGTGTAATCTCATTGGCTAATCAAGCCCCTTCACAGGATTTTGTTGGCATTGAGTTTGATCCAGATACTCTGAAGGTTCGTCATGAATCTGCAATCAGTGCCTTATACGGTAATCTTCCTAGACAGTGCACAACTTGTGGCCTCCGATTCAAATCCCAAGACGAGCACAGCAGTCACATGGATTGGCATGTGACTAAGAACCGTATGTCTAAAAACCGTAAGCAGAAGCCCTCTCGTAAATGGTTTGTGAGTGAGACGATGTGGCTTAGTGGTGCAGAGGCATTGGGAGCCGAATCAGCTCCAGGTTTTTTGCCAACTGAGACCACTGAGGAAAAGAAAGAAGATGAAGAGTTGGCTGTTCCGGCCGACGAGGACCAAAATACATGTGCATTATGTGGAGAACCTTTTGAGGAGTTTTACAGTGATGAAACGGAGGAGTGGATGTATAGAGGAGCTGTATACCTTAATGCGCCTAATGGAATAACAACAGGCATAGACAGGTCACAGTTAGGCCCCATTATTCATGCTAAATGCAGATCTGAATCTACCCCGTCTGAAGATTTTGTGATGGACGAAGGGGGCACCTATGAAGAAGGCAGTCAAAGAAAACGAATGCGGAGCTGA
Protein sequence

>Msa0936790

MSNEIVQKPPPSILVGRFKALLNQRREEDPRLRNSQPSTEEIVQIYELLLSELTCNVKPIITDLTIIAEQHRNHAKGIAFAICNRIVEVSADQKLPSLYLLDSIVKNVGQEYVRYFSPRLPEVFCVAYRQVDPSLHSAMRHLFGTWSKVFPPSVLRKIDVELQFSKPVNNQPSGVNSLRASESPRPTHGIHVNPRYVRQIEHSTSVIDSVAGERLDSTGTVGNANFGLLASKINQFVPSRVGRSSSPPRIGIDRHMPSYMDDYLADNSTGRTVERESPHHAVDYGLVKGLGREEELSEWSRKPFSGDSRKRFQTSMTYSLSNGQPRQNPRALIDAYGSDKSQETSGSKPLLVERLDRNGMDKVMTTSWQNTEEEEFDWEDMSPTVVDHGRSNGFLQPTIGFSSEKPVTVAANATSSVSRVFPGLNSNIEYRPPVLPAAFEMRHSVNVHAPRPPSITPIFPSKNPVRNPFESINANSTIVSHGLINRPFPVHEQSLHGVENNDINKRNLYQLPNQLPGLISSNPPNSVQTPSFQFFPPQDPAASQFTYRPSLPGHGPAMSNPLPNVRPVMPLPLPGQRIGNNSFHFQGGALRPLPPPGPHAPSQMPPHPNPSPFVPSQQPTVGYSNLINSLMAQGVISLANQAPSQDFVGIEFDPDTLKVRHESAISALYGNLPRQCTTCGLRFKSQDEHSSHMDWHVTKNRMSKNRKQKPSRKWFVSETMWLSGAEALGAESAPGFLPTETTEEKKEDEELAVPADEDQNTCALCGEPFEEFYSDETEEWMYRGAVYLNAPNGITTGIDRSQLGPIIHAKCRSESTPSEDFVMDEGGTYEEGSQRKRMRS*