AlfalfaGEDB | Msa0936900

M. sativa cultivar zhongmu-4 / Msa0936900

KEGG: K14400
GO: GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005849 GO:0006139 GO:0006351 GO:0006353 GO:0006366 GO:0006369 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009909 GO:0009911 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0019899 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0046483 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:2000026 GO:2000241 GO:2000243
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0936900	PNY17575.1	69.922	512	87	10	15	464	250	756	0.0	677

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0936900	sp\|Q0WPF2\|PCFS4_ARATH	41.129	496	221	13	30	463	303	789	4.68e-102	325

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa0936900	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0936900	MtrunA17_Chr6g0452881	70.980	510	88	7	15	464	304	813	0.0	671
Msa0936900	MtrunA17_Chr6g0452891	78.571	238	19	4	238	464	1	217	2.20e-127	368
Msa0936900	MtrunA17_Chr4g0037071	78.689	183	38	1	283	464	1	183	5.49e-96	289
Msa0936900	MtrunA17_Chr4g0037081	62.500	168	23	4	6	135	15	180	4.06e-56	184
Msa0936900	MtrunA17_Chr7g0265781	35.407	209	117	8	266	464	815	1015	1.53e-30	125
Msa0936900	MtrunA17_Chr1g0179281	34.302	172	106	4	298	464	839	1008	1.91e-28	119

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0936900	AT4G04885.1	41.129	496	221	13	30	463	303	789	4.76e-103	325
Msa0936900	AT1G66500.1	46.512	172	71	4	300	462	227	386	1.58e-45	164
Msa0936900	AT5G43620.1	37.818	275	112	12	232	462	121	380	1.41e-44	161
Msa0936900	AT2G36480.2	33.533	167	101	4	297	462	785	942	1.36e-22	101
Msa0936900	AT2G36480.1	33.533	167	101	4	297	462	785	942	1.36e-22	101

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Find 124 sgRNAs with CRISPR-Local

Find 297 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGATGAAGAATTTGT+TGG	0.465853	6_3:-7832216	None:intergenic
AAACGAAGAAGATGCTTGCC+CGG	0.536006	6_3:+7832184	None:intergenic
AAAGTTGCTGGCAAAACTGG+TGG	0.566107	6_3:-7832516	None:intergenic
AAATCAGAATATCCAACAGT+TGG	0.561830	6_3:-7833005	None:intergenic
AATACTACCACTGTGAGTCA+TGG	0.609522	6_3:+7832633	Msa0936900:CDS
AATATCCAACAGTTGGCTGT+TGG	0.553559	6_3:-7832998	None:intergenic
AATTAGACCATGACTCACAG+TGG	0.751691	6_3:-7832640	None:intergenic
AATTTGTTGGTATTTCTCTC+CGG	0.460995	6_3:-7832203	None:intergenic
ACAAGACCAGGTAGATGATT+AGG	0.495683	6_3:-7832735	None:intergenic
ACACTTGCTGCAACAGTAGC+AGG	0.463181	6_3:-7832438	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAAAAGCCAAGAAACTTTA+TGG	+	chr6_3:7832340-7832359	Msa0936900:CDS	30.0%
TCAATATTAGAATTCAGACC+AGG	-	chr6_3:7832489-7832508	None:intergenic	30.0%
AAATCAGAATATCCAACAGT+TGG	-	chr6_3:7833008-7833027	None:intergenic	30.0%
TCTAGGAAAATCACCATATA+AGG	-	chr6_3:7833249-7833268	None:intergenic	30.0%
CAAAATACATGTGCATTATG+TGG	+	chr6_3:7833518-7833537	Msa0936900:CDS	30.0%
GTATATCTTAATGTGCCTAA+TGG	+	chr6_3:7833599-7833618	Msa0936900:CDS	30.0%
CTGCATTTAGCATGAATAAT+AGG	-	chr6_3:7833659-7833678	None:intergenic	30.0%
TATATCGCAAAATCTTCAGA+CGG	-	chr6_3:7833695-7833714	None:intergenic	30.0%
AGAAAAGCCAAGAAACTTTA+TGG	+	chr6_3:7832340-7832359	Msa0936900:CDS	30.0%
TCAATATTAGAATTCAGACC+AGG	-	chr6_3:7832489-7832508	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_3	gene	7832195	7833722	7832195	ID=Msa0936900;Name=Msa0936900
chr6_3	mRNA	7832195	7833722	7832195	ID=Msa0936900-mRNA-1;Parent=Msa0936900;Name=Msa0936900-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0\|1\|0.5\|1\|1\|1\|2\|37\|464
chr6_3	exon	7832195	7833085	7832195	ID=Msa0936900-mRNA-1:exon:2582;Parent=Msa0936900-mRNA-1
chr6_3	exon	7833182	7833722	7833182	ID=Msa0936900-mRNA-1:exon:2583;Parent=Msa0936900-mRNA-1
chr6_3	CDS	7832195	7833085	7832195	ID=Msa0936900-mRNA-1:cds;Parent=Msa0936900-mRNA-1
chr6_3	CDS	7833182	7833685	7833182	ID=Msa0936900-mRNA-1:cds;Parent=Msa0936900-mRNA-1
chr6_3	three_prime_UTR	7833686	7833722	7833686	ID=Msa0936900-mRNA-1:three_prime_utr;Parent=Msa0936900-mRNA-1

Gene Sequence

>Msa0936900

ATGCTTGCCCGGAGAGAAATACCAACAAATTCTTCATCAGTTTTCTCACACTTTCCGCGAAAAAGATGTTTCGATGAGTTCAGCTATCTCAGCAACGGACAACCTCGTCAAAATCCAAGAGCTCTAATTGATGCCTATGGTAGCGAGAAAAGCCAAGAAACTTTATGGAAGAATACCGAAGAGGAGGAGTTCAATTGGAAAGATATGATTCCGACAACAACTATTGGTTTCTCATCAGAAAAGCCTGCTACTGTTGCAGCAAGTGTAACGTCTTCAGTGTCAAGGGCGTTTCCTGGTCTGAATTCTAATATTGAGTATCGTCCACCAGTTTTGCCAGCAACTTTTGAAATGAGGCCCTCCGTAAATGTGCATGCTCCACGTCCTCCTATATATCCATCGAAGATTCCTGTTAGGAATCCGTTCGAATCAATAAATGCTAATACTACCACTGTGAGTCATGGTCTAATTAATAAACCTATTCTTGTGCATGAACGTGGCGTTGAGAACAATGATATCAGTAAAAGAAACTTGCATCAGTTGCCTAATCATCTACCTGGTCTTGTTACATCTAACCCGCCAAACAGTGGTCAAACACCGCCATTCCAGTTTTTTCCATCTCAGGATCCAGCAGCGTCGCAATTTACTTACAGGACCTCTTTGCCAGGACATGGTGCTGCTATAAATAACCAGTTGCCAAATATACGACCTGTTATGCCACTCCCTTTGCGACCTTTACCTCCAGCTGGTCCACCTGCTCTACCCCAGATTCTACCTCATCCGAATCCTGGTCCTAATGTGTCAAGCCAACAGCCAACTGTTGGATATTCTGATTTGATTAGTTCACTCATGGCCCAAGGTGTTATCTCATTGGATAATCAAGCCCCTGCGGAGGATTTTATTGGCCTTGAGTTTGATCCAGATATTCTCAAGGTTCGTCATGAATCGGTAATCCGGGCCTTATATGGTGATTTTCCTAGACAGTGCACAACTTGTGGCCTCCGATTCAAATCCAAAGATGAGCACAGCAGTCACATGGATTGGCATGTGACTAAGAACCGTATGTCTAAAAACTGTAAGCAGAAGCCCTCTCGCAAGTGGTTTGTGAGTGAGACGATGTGGCTTAAAGGTGCAGAGACATTGGGAGTTAAGTCAGCTCCAGGTTTTTTGCCAACCGAGACCACCGAAGAAAAGAAAGATGAAGAATTTGCAGTTCCTGCTGACAAGGACCAAAATACATGTGCATTATGTGGAGAACCTTTTGACGTGTTTTACAGTGATGAAACGGAGGATTGGATGTGTAGAGGAGCTGTATATCTTAATGTGCCTAATGGAATAACAACAGGCACAGACAGGTCTCAGTTAGGCCCTATTATTCATGCTAAATGCAGATCTTAA

Protein sequence

>Msa0936900

MLARREIPTNSSSVFSHFPRKRCFDEFSYLSNGQPRQNPRALIDAYGSEKSQETLWKNTEEEEFNWKDMIPTTTIGFSSEKPATVAASVTSSVSRAFPGLNSNIEYRPPVLPATFEMRPSVNVHAPRPPIYPSKIPVRNPFESINANTTTVSHGLINKPILVHERGVENNDISKRNLHQLPNHLPGLVTSNPPNSGQTPPFQFFPSQDPAASQFTYRTSLPGHGAAINNQLPNIRPVMPLPLRPLPPAGPPALPQILPHPNPGPNVSSQQPTVGYSDLISSLMAQGVISLDNQAPAEDFIGLEFDPDILKVRHESVIRALYGDFPRQCTTCGLRFKSKDEHSSHMDWHVTKNRMSKNCKQKPSRKWFVSETMWLKGAETLGVKSAPGFLPTETTEEKKDEEFAVPADKDQNTCALCGEPFDVFYSDETEDWMCRGAVYLNVPNGITTGTDRSQLGPIIHAKCRS*