AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0937560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0937560 MtrunA17_Chr6g0453451 95.597 159 7 0 1 159 1 159 2.37e-115 329
Msa0937560 MtrunA17_Chr4g0060931 77.778 144 32 0 15 158 12 155 1.40e-83 249
Msa0937560 MtrunA17_Chr3g0091921 72.727 154 42 0 5 158 1 154 3.16e-80 239
Msa0937560 MtrunA17_Chr7g0253011 70.068 147 40 1 15 157 12 158 2.45e-75 229
Msa0937560 MtrunA17_Chr6g0461661 71.622 148 40 1 13 158 11 158 1.17e-74 228
Msa0937560 MtrunA17_Chr6g0484441 76.154 130 31 0 20 149 5 134 1.62e-74 225
Msa0937560 MtrunA17_Chr2g0316971 73.050 141 36 1 20 158 23 163 3.46e-73 224
Msa0937560 MtrunA17_Chr7g0217721 68.831 154 47 1 2 154 1 154 4.53e-73 223
Msa0937560 MtrunA17_Chr7g0217711 68.966 145 45 0 2 146 1 145 1.65e-70 210
Msa0937560 MtrunA17_Chr1g0147421 69.853 136 38 2 20 152 27 162 5.96e-67 207
Msa0937560 MtrunA17_Chr3g0144271 63.253 166 54 4 1 159 1 166 5.19e-66 207
Msa0937560 MtrunA17_Chr3g0139331 71.318 129 35 1 20 146 11 139 6.18e-64 199
Msa0937560 MtrunA17_Chr2g0312321 63.043 138 47 2 19 155 10 144 3.34e-59 186
Msa0937560 MtrunA17_Chr2g0309891 55.844 154 54 2 20 159 6 159 5.49e-56 179
Msa0937560 MtrunA17_Chr3g0124761 61.364 132 50 1 17 148 4 134 2.06e-55 176
Msa0937560 MtrunA17_Chr8g0372121 60.769 130 48 1 20 146 6 135 1.64e-54 174
Msa0937560 MtrunA17_Chr7g0263931 58.219 146 54 2 5 148 1 141 1.98e-54 174
Msa0937560 MtrunA17_Chr7g0252971 58.394 137 48 1 20 147 8 144 2.24e-54 174
Msa0937560 MtrunA17_Chr4g0018391 60.769 130 48 1 20 146 7 136 2.27e-54 174
Msa0937560 MtrunA17_Chr4g0017921 63.359 131 45 1 20 147 8 138 2.98e-54 174
Msa0937560 MtrunA17_Chr4g0056541 60.769 130 48 1 20 146 7 136 4.20e-54 174
Msa0937560 MtrunA17_Chr5g0405211 60.000 130 49 1 20 146 8 137 9.19e-54 173
Msa0937560 MtrunA17_Chr8g0359921 56.643 143 62 0 17 159 11 153 1.15e-53 172
Msa0937560 MtrunA17_Chr5g0417791 60.630 127 50 0 19 145 2 128 2.02e-53 169
Msa0937560 MtrunA17_Chr4g0042561 58.955 134 55 0 12 145 1 134 2.37e-53 170
Msa0937560 MtrunA17_Chr5g0398971 61.069 131 47 2 20 146 7 137 3.24e-53 172
Msa0937560 MtrunA17_Chr2g0318081 59.848 132 53 0 17 148 13 144 4.80e-53 171
Msa0937560 MtrunA17_Chr2g0318101 55.970 134 57 1 16 147 11 144 1.86e-52 170
Msa0937560 MtrunA17_Chr1g0183741 55.970 134 57 1 15 146 5 138 1.90e-52 167
Msa0937560 MtrunA17_Chr6g0481091 59.231 130 51 1 20 147 6 135 3.08e-52 166
Msa0937560 MtrunA17_Chr2g0326361 57.664 137 56 1 14 148 8 144 3.34e-52 168
Msa0937560 MtrunA17_Chr5g0433781 57.746 142 53 2 20 154 6 147 3.81e-52 175
Msa0937560 MtrunA17_Chr2g0309331 56.429 140 57 2 12 147 2 141 4.09e-52 169
Msa0937560 MtrunA17_Chr8g0384721 61.069 131 50 1 18 148 5 134 5.40e-52 167
Msa0937560 MtrunA17_Chr8g0346001 55.396 139 59 1 12 147 7 145 8.88e-52 170
Msa0937560 MtrunA17_Chr4g0047841 58.915 129 51 1 19 145 14 142 1.09e-51 167
Msa0937560 MtrunA17_Chr3g0130731 59.091 132 53 1 17 148 4 134 1.41e-51 166
Msa0937560 MtrunA17_Chr3g0109821 60.000 130 50 1 20 147 6 135 4.47e-51 172
Msa0937560 MtrunA17_Chr7g0261411 57.364 129 53 1 20 146 10 138 5.59e-51 164
Msa0937560 MtrunA17_Chr1g0200561 52.740 146 66 1 2 144 1 146 1.38e-50 165
Msa0937560 MtrunA17_Chr7g0214071 53.901 141 60 3 12 150 7 144 5.48e-49 158
Msa0937560 MtrunA17_Chr5g0400461 56.934 137 50 2 20 147 6 142 5.27e-48 158
Msa0937560 MtrunA17_Chr6g0453131 58.594 128 52 1 19 145 14 141 1.31e-47 158
Msa0937560 MtrunA17_Chr3g0128151 62.205 127 46 1 20 144 22 148 2.77e-47 161
Msa0937560 MtrunA17_Chr5g0417001 59.524 126 49 1 22 145 16 141 6.08e-47 156
Msa0937560 MtrunA17_Chr8g0361731 56.716 134 54 2 16 145 8 141 1.15e-46 156
Msa0937560 MtrunA17_Chr5g0428991 59.375 128 50 1 19 144 24 151 1.70e-46 159
Msa0937560 MtrunA17_Chr4g0054791 53.571 140 60 2 16 150 2 141 3.84e-46 152
Msa0937560 MtrunA17_Chr3g0128111 57.258 124 51 1 23 144 45 168 1.22e-44 147
Msa0937560 MtrunA17_Chr3g0113001 72.917 96 25 1 65 159 10 105 1.45e-44 148
Msa0937560 MtrunA17_Chr4g0076731 57.600 125 52 1 22 145 56 180 8.71e-44 149
Msa0937560 MtrunA17_Chr1g0201021 53.125 128 58 1 22 147 21 148 9.19e-44 151
Msa0937560 MtrunA17_Chr3g0130101 52.344 128 59 1 22 147 9 136 3.64e-43 146
Msa0937560 MtrunA17_Chr1g0197351 55.556 126 54 1 20 143 42 167 8.89e-43 147
Msa0937560 MtrunA17_Chr8g0364791 51.145 131 62 1 19 147 5 135 3.33e-42 145
Msa0937560 MtrunA17_Chr5g0442771 54.331 127 55 1 22 145 20 146 3.89e-42 142
Msa0937560 MtrunA17_Chr2g0311651 52.143 140 59 4 12 145 15 152 5.04e-42 142
Msa0937560 MtrunA17_Chr4g0038751 51.128 133 62 1 22 151 17 149 5.95e-42 141
Msa0937560 MtrunA17_Chr8g0384201 49.618 131 64 1 19 147 5 135 6.42e-42 145
Msa0937560 MtrunA17_Chr1g0197361 52.713 129 58 2 22 147 10 138 1.97e-41 145
Msa0937560 MtrunA17_Chr2g0311661 51.429 140 60 4 12 145 14 151 7.22e-41 138
Msa0937560 MtrunA17_Chr3g0092671 54.264 129 56 2 22 147 7 135 7.91e-41 143
Msa0937560 MtrunA17_Chr8g0345671 51.515 132 58 4 18 144 9 139 1.06e-37 132
Msa0937560 MtrunA17_Chr8g0385991 43.885 139 74 2 20 156 14 150 2.46e-37 127
Msa0937560 MtrunA17_Chr3g0131911 48.092 131 62 2 19 145 13 141 8.52e-37 126
Msa0937560 MtrunA17_Chr3g0113031 72.500 80 21 1 81 159 1 80 5.33e-35 122
Msa0937560 MtrunA17_Chr8g0345691 48.462 130 61 4 20 144 12 140 4.70e-34 123
Msa0937560 MtrunA17_Chr4g0026141 45.455 132 64 4 20 144 5 135 4.15e-32 115
Msa0937560 MtrunA17_Chr8g0345711 46.617 133 59 5 20 144 12 140 1.86e-31 111
Msa0937560 MtrunA17_Chr2g0321741 52.041 98 46 1 51 147 23 120 2.47e-31 115
Msa0937560 MtrunA17_Chr2g0321631 45.038 131 65 3 21 144 5 135 8.46e-31 111
Msa0937560 MtrunA17_Chr8g0345701 44.444 144 58 6 20 144 7 147 2.29e-30 108
Msa0937560 MtrunA17_Chr8g0345731 45.255 137 68 5 20 149 24 160 5.19e-30 107
Msa0937560 MtrunA17_Chr7g0266701 41.667 132 70 4 20 144 4 135 1.54e-26 100
Msa0937560 MtrunA17_Chr4g0050701 40.625 128 66 2 20 145 11 130 1.59e-26 99.0
Msa0937560 MtrunA17_Chr8g0345721 36.145 166 68 5 23 151 38 202 5.26e-26 98.2
Msa0937560 MtrunA17_Chr7g0243371 51.250 80 37 1 73 150 17 96 2.62e-24 91.3
Msa0937560 MtrunA17_Chr3g0113011 59.420 69 28 0 2 70 1 69 1.68e-23 87.8
Msa0937560 MtrunA17_Chr8g0345741 41.803 122 59 5 31 144 2 119 3.11e-23 89.4
Msa0937560 MtrunA17_Chr3g0113041 58.462 65 27 0 2 66 1 65 2.80e-21 82.0
Msa0937560 MtrunA17_Chr8g0384351 38.519 135 67 4 14 148 4 122 1.16e-20 83.6
Msa0937560 MtrunA17_Chr7g0251661 32.374 139 88 5 14 149 4 139 7.55e-19 78.2
Msa0937560 MtrunA17_Chr7g0251651 32.168 143 91 5 4 143 2 141 7.03e-18 76.6
Msa0937560 MtrunA17_Chr7g0251671 32.639 144 83 6 11 149 5 139 4.38e-16 71.2
Msa0937560 MtrunA17_Chr3g0130321 36.496 137 75 5 16 148 3 131 1.87e-15 70.5
Msa0937560 MtrunA17_Chr4g0046431 34.266 143 75 5 20 145 68 208 8.87e-15 70.1
Msa0937560 MtrunA17_Chr8g0367761 34.266 143 75 5 20 145 68 208 1.98e-14 68.6
Msa0937560 MtrunA17_Chr2g0282871 32.867 143 77 5 20 145 53 193 3.39e-14 68.2
Msa0937560 MtrunA17_Chr4g0040541 32.867 143 78 4 20 145 48 189 6.54e-14 67.4
Msa0937560 MtrunA17_Chr8g0389661 34.000 150 73 6 20 145 47 194 6.46e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0937560 AT3G29035.1 78.912 147 31 0 12 158 16 162 1.64e-86 256
Msa0937560 AT5G61430.1 79.167 144 30 0 15 158 11 154 3.08e-84 251
Msa0937560 AT5G39610.1 77.551 147 33 0 12 158 12 158 4.78e-84 249
Msa0937560 AT5G07680.1 76.027 146 35 0 13 158 10 155 9.33e-82 244
Msa0937560 AT5G07680.2 77.143 140 32 0 19 158 2 141 1.61e-79 238
Msa0937560 AT5G18270.1 74.497 149 37 1 11 158 12 160 6.68e-79 237
Msa0937560 AT5G18270.2 73.826 149 38 1 11 158 12 160 1.26e-78 236
Msa0937560 AT3G04060.1 75.694 144 34 1 16 158 16 159 2.78e-76 231
Msa0937560 AT3G18400.1 80.315 127 25 0 20 146 5 131 4.42e-75 227
Msa0937560 AT5G53950.1 74.468 141 34 1 20 158 17 157 2.21e-74 227
Msa0937560 AT3G15170.1 70.922 141 39 1 20 158 20 160 1.06e-69 213
Msa0937560 AT1G76420.1 62.500 160 56 2 1 156 1 160 5.76e-68 209
Msa0937560 AT2G24430.2 63.514 148 52 1 5 150 1 148 1.31e-65 202
Msa0937560 AT2G24430.1 63.514 148 52 1 5 150 1 148 1.31e-65 202
Msa0937560 AT3G12977.1 56.552 145 62 1 2 146 1 144 2.01e-58 183
Msa0937560 AT1G56010.2 60.145 138 54 1 19 155 18 155 1.09e-57 183
Msa0937560 AT3G04070.2 55.629 151 58 2 12 155 2 150 1.05e-55 178
Msa0937560 AT3G04070.1 55.629 151 58 2 12 155 2 150 1.53e-55 178
Msa0937560 AT1G01720.1 61.654 133 50 1 16 148 3 134 7.11e-55 174
Msa0937560 AT4G10350.1 62.879 132 46 1 20 148 9 140 1.93e-54 175
Msa0937560 AT1G33280.1 62.121 132 47 1 20 148 8 139 3.58e-54 173
Msa0937560 AT4G27410.2 61.240 129 50 0 17 145 11 139 7.24e-54 172
Msa0937560 AT4G36160.1 59.259 135 52 1 15 146 5 139 1.01e-53 174
Msa0937560 AT4G36160.3 59.259 135 52 1 15 146 5 139 1.01e-53 174
Msa0937560 AT4G36160.2 59.259 135 52 1 15 146 9 143 1.20e-53 174
Msa0937560 AT3G17730.1 60.000 130 50 1 20 147 6 135 3.05e-53 169
Msa0937560 AT1G12260.2 61.538 130 47 1 20 146 7 136 3.30e-53 172
Msa0937560 AT2G18060.3 57.246 138 56 1 12 146 1 138 4.39e-53 172
Msa0937560 AT2G18060.1 57.246 138 56 1 12 146 1 138 4.39e-53 172
Msa0937560 AT5G62380.2 60.000 130 49 1 20 146 7 136 5.47e-53 171
Msa0937560 AT5G62380.1 60.000 130 49 1 20 146 7 136 5.47e-53 171
Msa0937560 AT5G66300.1 55.172 145 57 2 12 153 4 143 5.82e-53 170
Msa0937560 AT1G12260.1 61.538 130 47 1 20 146 7 136 7.30e-53 172
Msa0937560 AT2G46770.1 54.110 146 64 1 5 147 1 146 1.14e-52 171
Msa0937560 AT1G77450.1 58.394 137 56 1 12 148 2 137 1.58e-52 167
Msa0937560 AT1G62700.1 59.398 133 51 1 19 148 6 138 3.20e-52 171
Msa0937560 AT1G62700.2 59.398 133 51 1 19 148 6 138 3.20e-52 171
Msa0937560 AT1G71930.2 56.061 132 55 1 20 148 9 140 5.62e-52 168
Msa0937560 AT1G71930.1 56.061 132 55 1 20 148 9 140 5.62e-52 168
Msa0937560 AT1G69490.1 54.745 137 62 0 12 148 1 137 6.47e-52 166
Msa0937560 AT3G03200.1 61.832 131 48 1 20 148 6 136 1.05e-51 171
Msa0937560 AT3G61910.1 53.191 141 63 1 11 148 2 142 1.21e-51 167
Msa0937560 AT1G61110.1 58.462 130 53 1 19 147 15 144 1.98e-51 167
Msa0937560 AT3G15500.1 59.690 129 52 0 17 145 11 139 2.08e-51 166
Msa0937560 AT3G10490.1 60.938 128 48 1 20 145 27 154 2.65e-51 164
Msa0937560 AT1G65910.1 59.231 130 51 1 20 147 6 135 3.93e-51 172
Msa0937560 AT2G33480.2 54.861 144 61 2 5 148 1 140 4.13e-51 164
Msa0937560 AT2G33480.1 54.861 144 61 2 5 148 1 140 4.22e-51 164
Msa0937560 AT1G33060.1 60.769 130 49 1 20 147 24 153 4.36e-51 172
Msa0937560 AT5G61430.2 83.333 90 15 0 69 158 2 91 4.64e-51 164
Msa0937560 AT1G33060.2 60.769 130 49 1 20 147 24 153 5.10e-51 172
Msa0937560 AT1G32770.1 53.741 147 65 1 5 148 1 147 6.46e-51 166
Msa0937560 AT5G17260.1 60.305 131 50 1 20 148 6 136 7.63e-51 169
Msa0937560 AT5G08790.1 56.738 141 60 1 17 157 4 143 8.25e-51 164
Msa0937560 AT1G52890.1 59.690 129 52 0 17 145 11 139 9.85e-51 165
Msa0937560 AT5G39820.1 57.143 147 58 3 1 145 4 147 1.89e-50 164
Msa0937560 AT4G35580.1 62.205 127 46 1 20 144 9 135 2.15e-50 168
Msa0937560 AT4G35580.3 62.205 127 46 1 20 144 9 135 2.78e-50 169
Msa0937560 AT4G35580.2 62.205 127 46 1 20 144 9 135 2.79e-50 169
Msa0937560 AT5G46590.2 58.088 136 54 2 20 152 6 141 3.33e-50 162
Msa0937560 AT5G46590.1 58.088 136 54 2 20 152 6 141 4.14e-50 162
Msa0937560 AT3G10490.2 60.938 128 48 1 20 145 27 154 5.86e-50 166
Msa0937560 AT5G04410.1 60.000 130 50 1 20 147 9 138 6.85e-50 168
Msa0937560 AT3G10480.1 60.938 128 48 1 20 145 27 154 9.21e-50 166
Msa0937560 AT3G10480.2 60.938 128 48 1 20 145 27 154 1.00e-49 165
Msa0937560 AT3G10500.1 59.231 130 51 1 20 147 9 138 1.04e-49 167
Msa0937560 AT1G79580.3 53.793 145 63 2 8 148 5 149 1.22e-49 163
Msa0937560 AT1G79580.5 53.793 145 63 2 8 148 5 149 1.22e-49 163
Msa0937560 AT1G79580.4 53.793 145 63 2 8 148 5 149 1.22e-49 163
Msa0937560 AT1G79580.2 53.793 145 63 2 8 148 5 149 1.22e-49 163
Msa0937560 AT1G79580.1 53.793 145 63 2 8 148 5 149 1.22e-49 163
Msa0937560 AT4G27410.3 54.110 146 50 1 17 145 11 156 2.02e-49 161
Msa0937560 AT1G54330.1 61.719 128 47 1 20 145 6 133 2.40e-49 160
Msa0937560 AT1G26870.1 57.554 139 55 2 10 144 4 142 8.28e-49 162
Msa0937560 AT4G28530.1 53.425 146 50 2 19 146 9 154 1.18e-48 160
Msa0937560 AT5G63790.1 58.333 132 54 1 17 148 47 177 1.27e-48 159
Msa0937560 AT5G63790.2 58.333 132 54 1 17 148 57 187 1.51e-48 159
Msa0937560 AT4G17980.1 57.576 132 52 2 20 147 6 137 6.54e-48 156
Msa0937560 AT2G43000.1 50.340 147 72 1 13 158 10 156 1.16e-47 155
Msa0937560 AT4G17980.2 57.576 132 52 2 20 147 6 137 1.34e-47 156
Msa0937560 AT5G13180.1 56.154 130 52 3 18 145 12 138 5.40e-47 153
Msa0937560 AT3G15510.1 55.645 124 53 1 24 145 21 144 1.65e-46 155
Msa0937560 AT2G02450.1 58.400 125 51 1 22 145 53 177 9.77e-45 151
Msa0937560 AT2G02450.2 58.400 125 51 1 22 145 53 177 1.23e-44 151
Msa0937560 AT3G12910.1 53.147 143 60 4 8 145 10 150 2.20e-44 148
Msa0937560 AT1G34180.3 51.562 128 60 1 22 147 18 145 1.27e-43 149
Msa0937560 AT3G10480.3 48.447 161 48 1 20 145 27 187 1.53e-43 150
Msa0937560 AT2G17040.1 51.880 133 61 1 22 151 8 140 1.59e-43 145
Msa0937560 AT5G24590.2 54.930 142 56 3 20 153 13 154 3.06e-43 148
Msa0937560 AT3G49530.2 55.072 138 58 3 20 153 13 150 4.36e-43 147
Msa0937560 AT1G34180.1 51.562 128 60 1 22 147 18 145 4.75e-43 150
Msa0937560 AT1G52880.1 54.688 128 54 1 24 147 21 148 5.67e-43 145
Msa0937560 AT5G09330.5 49.624 133 65 1 17 147 3 135 6.22e-43 148
Msa0937560 AT5G09330.2 49.624 133 65 1 17 147 3 135 6.22e-43 148
Msa0937560 AT5G09330.4 49.624 133 65 1 17 147 3 135 6.22e-43 148
Msa0937560 AT5G09330.3 49.624 133 65 1 17 147 3 135 6.22e-43 148
Msa0937560 AT5G09330.1 49.624 133 65 1 17 147 3 135 6.22e-43 148
Msa0937560 AT3G49530.1 55.072 138 58 3 20 153 13 150 9.56e-43 147
Msa0937560 AT5G64060.1 48.120 133 67 1 17 147 3 135 1.03e-42 145
Msa0937560 AT1G34190.1 50.781 128 61 1 22 147 18 145 1.23e-42 149
Msa0937560 AT2G27300.1 50.400 125 61 1 20 143 14 138 3.56e-42 143
Msa0937560 AT1G34180.4 47.143 140 60 1 22 147 18 157 1.99e-41 144
Msa0937560 AT1G32510.1 50.704 142 61 2 20 152 6 147 4.60e-41 139
Msa0937560 AT1G34180.2 47.143 140 60 1 22 147 18 157 7.26e-41 144
Msa0937560 AT1G32870.2 52.985 134 59 2 14 145 4 135 4.98e-39 138
Msa0937560 AT1G32870.1 52.985 134 59 2 14 145 4 135 5.10e-39 138
Msa0937560 AT5G22290.1 49.593 123 61 1 22 143 23 145 6.11e-39 135
Msa0937560 AT1G32870.3 52.985 134 59 2 14 145 40 171 8.56e-39 138
Msa0937560 AT3G44290.2 48.780 123 62 1 22 143 16 138 1.02e-37 129
Msa0937560 AT5G04395.1 46.154 143 61 2 19 145 27 169 2.01e-37 127
Msa0937560 AT3G44290.1 48.780 123 62 1 22 143 16 138 6.69e-37 129
Msa0937560 AT1G56010.1 64.368 87 31 0 69 155 2 88 2.63e-36 126
Msa0937560 AT3G12977.2 67.949 78 25 0 69 146 14 91 1.84e-35 123
Msa0937560 AT4G10350.2 71.053 76 22 0 73 148 18 93 7.27e-34 120
Msa0937560 AT4G28530.2 48.062 129 49 2 19 129 9 137 5.40e-32 116
Msa0937560 AT2G33480.3 63.158 76 28 0 73 148 8 83 3.48e-31 111
Msa0937560 AT3G44350.1 40.278 144 80 3 19 156 4 147 5.90e-28 102
Msa0937560 AT3G44350.2 40.278 144 80 3 19 156 4 147 2.95e-27 102
Msa0937560 AT4G01550.1 44.186 129 66 3 23 145 7 135 3.45e-27 105
Msa0937560 AT1G02230.1 43.077 130 64 5 21 143 4 130 1.84e-26 102
Msa0937560 AT4G01520.1 39.394 132 73 4 21 145 5 136 1.84e-26 101
Msa0937560 AT5G22380.1 41.176 136 73 4 19 147 4 139 3.72e-26 99.4
Msa0937560 AT5G64530.2 40.769 130 63 3 20 147 3 120 6.92e-26 96.7
Msa0937560 AT4G01540.2 40.769 130 70 4 23 145 7 136 1.30e-25 101
Msa0937560 AT4G01540.4 41.985 131 67 5 23 145 7 136 1.41e-25 100
Msa0937560 AT4G01540.1 40.769 130 70 4 23 145 7 136 2.05e-25 100
Msa0937560 AT5G64530.1 40.769 130 63 3 20 147 3 120 2.09e-25 96.3
Msa0937560 AT4G01540.3 41.985 131 67 5 23 145 7 136 2.36e-25 100
Msa0937560 AT3G04420.2 39.231 130 75 2 18 143 1 130 3.86e-25 98.2
Msa0937560 AT3G04420.1 39.231 130 75 2 18 143 1 130 6.24e-25 98.2
Msa0937560 AT3G10490.4 75.472 53 13 0 93 145 2 54 7.14e-23 92.8
Msa0937560 AT3G10490.3 75.472 53 13 0 93 145 2 54 7.14e-23 92.8
Msa0937560 AT1G02250.1 40.000 140 72 5 21 153 4 138 2.01e-22 92.0
Msa0937560 AT1G02220.1 37.692 130 74 3 18 143 1 127 5.47e-21 88.2
Msa0937560 AT1G01010.1 35.507 138 71 5 23 146 6 139 9.05e-21 87.8
Msa0937560 AT2G18060.2 71.429 49 14 0 98 146 2 50 3.37e-20 84.7
Msa0937560 AT2G43000.2 47.436 78 41 0 81 158 1 78 6.68e-20 82.4
Msa0937560 AT5G14000.2 35.659 129 79 2 19 145 14 140 1.08e-18 78.2
Msa0937560 AT5G14000.1 35.659 129 79 2 19 145 14 140 3.23e-18 78.2
Msa0937560 AT5G50820.1 37.226 137 60 7 20 145 17 138 6.37e-18 77.0
Msa0937560 AT3G56530.1 31.159 138 92 2 14 148 46 183 7.23e-18 79.0
Msa0937560 AT5G22290.2 62.222 45 17 0 99 143 2 46 5.26e-15 70.1
Msa0937560 AT3G55210.1 29.655 145 88 3 18 148 9 153 2.41e-13 66.2
Msa0937560 AT5G14490.4 31.469 143 80 4 20 145 55 196 1.64e-12 64.3
Msa0937560 AT5G14490.1 31.469 143 80 4 20 145 58 199 1.70e-12 64.3
Msa0937560 AT5G14490.2 31.469 143 80 4 20 145 55 196 1.78e-12 63.9
Msa0937560 AT5G14490.3 31.469 143 80 4 20 145 58 199 2.26e-12 63.9
Msa0937560 AT3G04430.1 31.298 131 78 3 26 144 6 136 3.39e-12 62.0
Msa0937560 AT4G29230.3 34.437 151 72 6 20 145 48 196 4.32e-12 63.2
Msa0937560 AT5G56620.3 32.026 153 76 4 20 145 43 194 4.48e-12 63.2
Msa0937560 AT5G56620.2 32.026 153 76 4 20 145 43 194 5.01e-12 63.2
Msa0937560 AT5G56620.1 32.026 153 76 4 20 145 43 194 6.37e-12 62.8
Msa0937560 AT3G01600.1 31.944 144 78 5 20 145 55 196 1.43e-11 61.6
Msa0937560 AT4G29230.2 34.437 151 72 6 20 145 47 195 1.50e-11 61.6
Msa0937560 AT4G29230.1 34.437 151 72 6 20 145 48 196 1.52e-11 61.6
Msa0937560 AT1G25580.1 30.935 139 79 4 20 145 58 192 6.49e-11 59.7

Find 28 sgRNAs with CRISPR-Local

Find 88 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAATTGCCACCTGGATTT+AGG 0.205368 6_3:-8971231 Msa0937560:CDS
AAAACTCACCATAGCTCTTT+TGG 0.230831 6_3:+8970550 None:intergenic
CAACAGGTCTAAGGACAAAT+AGG 0.280592 6_3:-8970754 Msa0937560:CDS
TATAGAGAGAAGATACTAAT+TGG 0.287773 6_3:-8970683 Msa0937560:CDS
TTGTGTAGGGAGGGCCAATA+TGG 0.306694 6_3:-8970822 Msa0937560:intron
GAAAATATCCAACAGGTCTA+AGG 0.349499 6_3:-8970763 Msa0937560:CDS
GGGCCACAAGTGCTGGATAT+TGG 0.352195 6_3:-8970733 Msa0937560:CDS
CTATTTGTCCTTAGACCTGT+TGG 0.388363 6_3:+8970755 None:intergenic
ACAAATAGGGCCACAAGTGC+TGG 0.406967 6_3:-8970740 Msa0937560:CDS
AAGAATACGTGTCTTCTAAT+CGG 0.437819 6_3:+8970585 None:intergenic
AACAGGTCTAAGGACAAATA+GGG 0.472940 6_3:-8970753 Msa0937560:CDS
CTTCCAATATCCAGCACTTG+TGG 0.473141 6_3:+8970730 None:intergenic
GCTGGATATTGGAAGGCAAC+AGG 0.474169 6_3:-8970722 Msa0937560:CDS
TTTGAACAAGTGTGAACCTT+GGG 0.484109 6_3:-8971116 Msa0937560:CDS
GAGGGCCAATATGGGTGAAA+AGG 0.519049 6_3:-8970813 Msa0937560:CDS
AGGGACAGAAAATATCCAAC+AGG 0.520947 6_3:-8970770 Msa0937560:CDS
GTTATGAGTTCTTCATCTGT+TGG 0.527445 6_3:+8971202 None:intergenic
ATTAATTATGATGGATGCAA+TGG 0.548436 6_3:-8971290 None:intergenic
TACAAAGGAAGAGCTCCTAA+AGG 0.554352 6_3:-8970638 Msa0937560:CDS
TGTGTAGGGAGGGCCAATAT+GGG 0.558995 6_3:-8970821 Msa0937560:intron
GTTGGATGAAACCTAAATCC+AGG 0.563929 6_3:+8971220 None:intergenic
GTTCAAATCAGCTTTACCAA+TGG 0.567084 6_3:+8971132 None:intergenic
AAATGTATCCAAAAGAGCTA+TGG 0.569420 6_3:-8970558 None:intergenic
CACAAGTGCTGGATATTGGA+AGG 0.578271 6_3:-8970729 Msa0937560:CDS
ATTTGAACAAGTGTGAACCT+TGG 0.620030 6_3:-8971117 Msa0937560:CDS
TACTTACAAGGCAAATCCCA+AGG 0.621454 6_3:+8971100 None:intergenic
CCAATATGGGTGAAAAGGAG+TGG 0.638048 6_3:-8970808 Msa0937560:CDS
GGATGAAACCTAAATCCAGG+TGG 0.732405 6_3:+8971223 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTAAGAGAAAAAAAAA+TGG + chr6_3:8970790-8970809 None:intergenic 10.0%
!!! TTTTTTAAGAGAAAAAAAAA+TGG + chr6_3:8970790-8970809 None:intergenic 10.0%
!!! TATTTTTTCTTAATTGTGTA+GGG - chr6_3:8971007-8971026 Msa0937560:intron 15.0%
!!! TATTTTTTCTTAATTGTGTA+GGG - chr6_3:8971007-8971026 Msa0937560:intron 15.0%
!! AGAAAAAAAAATGGAATCAA+TGG + chr6_3:8970781-8970800 None:intergenic 20.0%
!!! TTAGTATCGAGTTTTTAAAT+CGG - chr6_3:8970812-8970831 Msa0937560:CDS 20.0%
!!! CTATTTTTTCTTAATTGTGT+AGG - chr6_3:8971006-8971025 Msa0937560:intron 20.0%
!! TAAAGGTGAAAAAACAAATT+GGG - chr6_3:8971221-8971240 Msa0937560:CDS 20.0%
!! AGAAAAAAAAATGGAATCAA+TGG + chr6_3:8970781-8970800 None:intergenic 20.0%
!!! TTAGTATCGAGTTTTTAAAT+CGG - chr6_3:8970812-8970831 Msa0937560:CDS 20.0%
!!! CTATTTTTTCTTAATTGTGT+AGG - chr6_3:8971006-8971025 Msa0937560:intron 20.0%
!! TAAAGGTGAAAAAACAAATT+GGG - chr6_3:8971221-8971240 Msa0937560:CDS 20.0%
!!! TATTAAGAACTTTTTGAGAG+AGG + chr6_3:8970672-8970691 None:intergenic 25.0%
! AATGAGAAGAAATACTTACA+AGG + chr6_3:8970757-8970776 None:intergenic 25.0%
! TATAGAGAGAAGATACTAAT+TGG - chr6_3:8971159-8971178 Msa0937560:CDS 25.0%
!!! AAAACACTTGTTTTCTACAA+AGG - chr6_3:8971189-8971208 Msa0937560:CDS 25.0%
!!! CAATTTGTTTTTTCACCTTT+AGG + chr6_3:8971222-8971241 None:intergenic 25.0%
! CTAAAGGTGAAAAAACAAAT+TGG - chr6_3:8971220-8971239 Msa0937560:CDS 25.0%
!!! TATTAAGAACTTTTTGAGAG+AGG + chr6_3:8970672-8970691 None:intergenic 25.0%
! AATGAGAAGAAATACTTACA+AGG + chr6_3:8970757-8970776 None:intergenic 25.0%
! TATAGAGAGAAGATACTAAT+TGG - chr6_3:8971159-8971178 Msa0937560:CDS 25.0%
!!! AAAACACTTGTTTTCTACAA+AGG - chr6_3:8971189-8971208 Msa0937560:CDS 25.0%
!!! CAATTTGTTTTTTCACCTTT+AGG + chr6_3:8971222-8971241 None:intergenic 25.0%
! CTAAAGGTGAAAAAACAAAT+TGG - chr6_3:8971220-8971239 Msa0937560:CDS 25.0%
! TTTTTCTTAATTGTGTAGGG+AGG - chr6_3:8971010-8971029 Msa0937560:intron 30.0%
! TTTTCTTAATTGTGTAGGGA+GGG - chr6_3:8971011-8971030 Msa0937560:intron 30.0%
AAGAATACGTGTCTTCTAAT+CGG + chr6_3:8971260-8971279 None:intergenic 30.0%
! TTTTTCTTAATTGTGTAGGG+AGG - chr6_3:8971010-8971029 Msa0937560:intron 30.0%
! TTTTCTTAATTGTGTAGGGA+GGG - chr6_3:8971011-8971030 Msa0937560:intron 30.0%
AAGAATACGTGTCTTCTAAT+CGG + chr6_3:8971260-8971279 None:intergenic 30.0%
GAAAAATTTGAATTGCCACC+TGG - chr6_3:8970604-8970623 Msa0937560:CDS 35.0%
GTTATGAGTTCTTCATCTGT+TGG + chr6_3:8970643-8970662 None:intergenic 35.0%
! TCTTTTTGTGCTATAGCCAT+TGG - chr6_3:8970694-8970713 Msa0937560:CDS 35.0%
GTTCAAATCAGCTTTACCAA+TGG + chr6_3:8970713-8970732 None:intergenic 35.0%
ATTTGAACAAGTGTGAACCT+TGG - chr6_3:8970725-8970744 Msa0937560:CDS 35.0%
TTTGAACAAGTGTGAACCTT+GGG - chr6_3:8970726-8970745 Msa0937560:CDS 35.0%
!!! AGTGGTATTTTTTCTGTGTG+AGG - chr6_3:8971052-8971071 Msa0937560:intron 35.0%
!!! GTGGTATTTTTTCTGTGTGA+GGG - chr6_3:8971053-8971072 Msa0937560:intron 35.0%
GAAAATATCCAACAGGTCTA+AGG - chr6_3:8971079-8971098 Msa0937560:intron 35.0%
AACAGGTCTAAGGACAAATA+GGG - chr6_3:8971089-8971108 Msa0937560:intron 35.0%
GAAAAATTTGAATTGCCACC+TGG - chr6_3:8970604-8970623 Msa0937560:CDS 35.0%
GTTATGAGTTCTTCATCTGT+TGG + chr6_3:8970643-8970662 None:intergenic 35.0%
! TCTTTTTGTGCTATAGCCAT+TGG - chr6_3:8970694-8970713 Msa0937560:CDS 35.0%
GTTCAAATCAGCTTTACCAA+TGG + chr6_3:8970713-8970732 None:intergenic 35.0%
ATTTGAACAAGTGTGAACCT+TGG - chr6_3:8970725-8970744 Msa0937560:CDS 35.0%
TTTGAACAAGTGTGAACCTT+GGG - chr6_3:8970726-8970745 Msa0937560:CDS 35.0%
!!! AGTGGTATTTTTTCTGTGTG+AGG - chr6_3:8971052-8971071 Msa0937560:intron 35.0%
!!! GTGGTATTTTTTCTGTGTGA+GGG - chr6_3:8971053-8971072 Msa0937560:intron 35.0%
GAAAATATCCAACAGGTCTA+AGG - chr6_3:8971079-8971098 Msa0937560:intron 35.0%
AACAGGTCTAAGGACAAATA+GGG - chr6_3:8971089-8971108 Msa0937560:intron 35.0%
TTGAATTGCCACCTGGATTT+AGG - chr6_3:8970611-8970630 Msa0937560:CDS 40.0%
GTTGGATGAAACCTAAATCC+AGG + chr6_3:8970625-8970644 None:intergenic 40.0%
TACTTACAAGGCAAATCCCA+AGG + chr6_3:8970745-8970764 None:intergenic 40.0%
AGGGACAGAAAATATCCAAC+AGG - chr6_3:8971072-8971091 Msa0937560:intron 40.0%
CTATTTGTCCTTAGACCTGT+TGG + chr6_3:8971090-8971109 None:intergenic 40.0%
CAACAGGTCTAAGGACAAAT+AGG - chr6_3:8971088-8971107 Msa0937560:intron 40.0%
TACAAAGGAAGAGCTCCTAA+AGG - chr6_3:8971204-8971223 Msa0937560:CDS 40.0%
TTGAATTGCCACCTGGATTT+AGG - chr6_3:8970611-8970630 Msa0937560:CDS 40.0%
GTTGGATGAAACCTAAATCC+AGG + chr6_3:8970625-8970644 None:intergenic 40.0%
TACTTACAAGGCAAATCCCA+AGG + chr6_3:8970745-8970764 None:intergenic 40.0%
AGGGACAGAAAATATCCAAC+AGG - chr6_3:8971072-8971091 Msa0937560:intron 40.0%
CTATTTGTCCTTAGACCTGT+TGG + chr6_3:8971090-8971109 None:intergenic 40.0%
CAACAGGTCTAAGGACAAAT+AGG - chr6_3:8971088-8971107 Msa0937560:intron 40.0%
TACAAAGGAAGAGCTCCTAA+AGG - chr6_3:8971204-8971223 Msa0937560:CDS 40.0%
GGATGAAACCTAAATCCAGG+TGG + chr6_3:8970622-8970641 None:intergenic 45.0%
GGTATGCAATCGTGACATCA+AGG - chr6_3:8970833-8970852 Msa0937560:intron 45.0%
! CCACTCCTTTTCACCCATAT+TGG + chr6_3:8971037-8971056 None:intergenic 45.0%
CCAATATGGGTGAAAAGGAG+TGG - chr6_3:8971034-8971053 Msa0937560:intron 45.0%
CTTCCAATATCCAGCACTTG+TGG + chr6_3:8971115-8971134 None:intergenic 45.0%
!! CACAAGTGCTGGATATTGGA+AGG - chr6_3:8971113-8971132 Msa0937560:CDS 45.0%
GGATGAAACCTAAATCCAGG+TGG + chr6_3:8970622-8970641 None:intergenic 45.0%
GGTATGCAATCGTGACATCA+AGG - chr6_3:8970833-8970852 Msa0937560:intron 45.0%
! CCACTCCTTTTCACCCATAT+TGG + chr6_3:8971037-8971056 None:intergenic 45.0%
CCAATATGGGTGAAAAGGAG+TGG - chr6_3:8971034-8971053 Msa0937560:intron 45.0%
CTTCCAATATCCAGCACTTG+TGG + chr6_3:8971115-8971134 None:intergenic 45.0%
!! CACAAGTGCTGGATATTGGA+AGG - chr6_3:8971113-8971132 Msa0937560:CDS 45.0%
TTGTGTAGGGAGGGCCAATA+TGG - chr6_3:8971020-8971039 Msa0937560:intron 50.0%
TGTGTAGGGAGGGCCAATAT+GGG - chr6_3:8971021-8971040 Msa0937560:intron 50.0%
GAGGGCCAATATGGGTGAAA+AGG - chr6_3:8971029-8971048 Msa0937560:intron 50.0%
ACAAATAGGGCCACAAGTGC+TGG - chr6_3:8971102-8971121 Msa0937560:intron 50.0%
GCTGGATATTGGAAGGCAAC+AGG - chr6_3:8971120-8971139 Msa0937560:CDS 50.0%
TTGTGTAGGGAGGGCCAATA+TGG - chr6_3:8971020-8971039 Msa0937560:intron 50.0%
TGTGTAGGGAGGGCCAATAT+GGG - chr6_3:8971021-8971040 Msa0937560:intron 50.0%
GAGGGCCAATATGGGTGAAA+AGG - chr6_3:8971029-8971048 Msa0937560:intron 50.0%
ACAAATAGGGCCACAAGTGC+TGG - chr6_3:8971102-8971121 Msa0937560:intron 50.0%
GCTGGATATTGGAAGGCAAC+AGG - chr6_3:8971120-8971139 Msa0937560:CDS 50.0%
!! GGGCCACAAGTGCTGGATAT+TGG - chr6_3:8971109-8971128 Msa0937560:CDS 55.0%
!! GGGCCACAAGTGCTGGATAT+TGG - chr6_3:8971109-8971128 Msa0937560:CDS 55.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 8970559 8971305 8970559 ID=Msa0937560;Name=Msa0937560
chr6_3 mRNA 8970559 8971305 8970559 ID=Msa0937560-mRNA-1;Parent=Msa0937560;Name=Msa0937560-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0|0|1|1|1|2|0|159
chr6_3 exon 8971107 8971305 8971107 ID=Msa0937560-mRNA-1:exon:2876;Parent=Msa0937560-mRNA-1
chr6_3 exon 8970559 8970836 8970559 ID=Msa0937560-mRNA-1:exon:2875;Parent=Msa0937560-mRNA-1
chr6_3 CDS 8971107 8971305 8971107 ID=Msa0937560-mRNA-1:cds;Parent=Msa0937560-mRNA-1
chr6_3 CDS 8970559 8970836 8970559 ID=Msa0937560-mRNA-1:cds;Parent=Msa0937560-mRNA-1
Gene Sequence

>Msa0937560

ATGATGGATGCAATGGAGAAAAATTCAAGAAATGTTGAGAGTGATGAAAAATTTGAATTGCCACCTGGATTTAGGTTTCATCCAACAGATGAAGAACTCATAACTCATTACCTCTCTCAAAAAGTTCTTAATAATTCTTTTTGTGCTATAGCCATTGGTAAAGCTGATTTGAACAAGTGTGAACCTTGGGATTTGCCTTGGAGGGCCAATATGGGTGAAAAGGAGTGGTATTTTTTCTGTGTGAGGGACAGAAAATATCCAACAGGTCTAAGGACAAATAGGGCCACAAGTGCTGGATATTGGAAGGCAACAGGTAAAGACAAAGAGATATATAGAGAGAAGATACTAATTGGAATGAAGAAAACACTTGTTTTCTACAAAGGAAGAGCTCCTAAAGGTGAAAAAACAAATTGGGTCATGCATGAATACCGATTAGAAGACACGTATTCTTTGCAAAATGTATCCAAAAGAGCTATG
Protein sequence

>Msa0937560

MMDAMEKNSRNVESDEKFELPPGFRFHPTDEELITHYLSQKVLNNSFCAIAIGKADLNKCEPWDLPWRANMGEKEWYFFCVRDRKYPTGLRTNRATSAGYWKATGKDKEIYREKILIGMKKTLVFYKGRAPKGEKTNWVMHEYRLEDTYSLQNVSKRAM