Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0941810 | KEH24833.1 | 60.300 | 267 | 40 | 5 | 48 | 250 | 113 | 377 | 1.20e-90 | 286 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0941810 | sp|Q94AY1|NADB_ARATH | 45.725 | 269 | 78 | 6 | 48 | 250 | 288 | 554 | 1.20e-61 | 208 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0941810 | TF | LOB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0941810 | MtrunA17_Chr6g0450691 | 60.300 | 267 | 40 | 5 | 48 | 250 | 325 | 589 | 2.94e-92 | 286 |
| Msa0941810 | MtrunA17_Chr6g0449311 | 76.471 | 51 | 12 | 0 | 1 | 51 | 1 | 51 | 4.56e-19 | 81.3 |
| Msa0941810 | MtrunA17_Chr4g0055441 | 70.213 | 47 | 14 | 0 | 5 | 51 | 34 | 80 | 1.51e-14 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0941810 | AT5G14760.1 | 45.725 | 269 | 78 | 6 | 48 | 250 | 288 | 554 | 1.22e-62 | 208 |
Find 61 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCAGAATGCATCAAATTTA+TGG | 0.176011 | 6_3:+15823412 | Msa0941810:CDS |
| GCCATAAATTTGATGCATTC+TGG | 0.247172 | 6_3:-15823413 | None:intergenic |
| TGCGACAGGATTTCATTCTT+TGG | 0.284336 | 6_3:-15823113 | None:intergenic |
| GCCAATGCTCATCGTTTGTT+TGG | 0.347008 | 6_3:+15821613 | Msa0941810:CDS |
| GGATTTCATTCTTTGGTTTG+TGG | 0.362481 | 6_3:-15823106 | None:intergenic |
| CTTTCAGATTTGTCTCTCCT+TGG | 0.374691 | 6_3:-15823248 | None:intergenic |
| GCTTCGACGTGTCTTCAATA+TGG | 0.375750 | 6_3:+15823149 | Msa0941810:CDS |
| GGGGATGATGGTGGCATCCT+TGG | 0.395928 | 6_3:+15822965 | Msa0941810:CDS |
| AATGAGCAGCTTGGAACAAC+GGG | 0.400274 | 6_3:-15823197 | None:intergenic |
| GACGTGTCTTCAATATGGTT+TGG | 0.409510 | 6_3:+15823154 | Msa0941810:CDS |
| TTCTGATATCTGAAGCTGTA+AGG | 0.436210 | 6_3:+15822944 | Msa0941810:intron |
| CAGCTTGGAACAACGGGGAT+TGG | 0.448874 | 6_3:-15823191 | None:intergenic |
| CTTTATCATCTTCACCATGT+TGG | 0.469925 | 6_3:-15821641 | None:intergenic |
| GAAAACGGCACCGTAGGTCT+TGG | 0.471271 | 6_3:-15823435 | None:intergenic |
| TGCCATTGCAATTCCATCTC+CGG | 0.480749 | 6_3:-15822630 | None:intergenic |
| CAAGGGGAGAGCTTGCTCCT+AGG | 0.485480 | 6_3:+15823012 | Msa0941810:CDS |
| TTGGTTTGTGGCTAATGTCA+AGG | 0.486188 | 6_3:-15823094 | None:intergenic |
| AAGGGGAGAGCTTGCTCCTA+GGG | 0.497573 | 6_3:+15823013 | Msa0941810:CDS |
| GTTTGGAGACATGCTTGACT+TGG | 0.498309 | 6_3:-15821739 | None:intergenic |
| AATTTGATGCATTCTGGTCG+AGG | 0.501302 | 6_3:-15823407 | None:intergenic |
| TCACAGGTTGCCACCGGAGA+TGG | 0.508054 | 6_3:+15822617 | Msa0941810:intron |
| GCATTACTTCCAAGTGAAAA+CGG | 0.512702 | 6_3:-15823450 | None:intergenic |
| AAGACACGTCGAAGCAATGT+TGG | 0.513821 | 6_3:-15823141 | None:intergenic |
| GGAGTTCATGCCGGGCTCCA+AGG | 0.519634 | 6_3:+15823231 | Msa0941810:CDS |
| ATTTGTCTCTCCTTGGAGCC+CGG | 0.520871 | 6_3:-15823241 | None:intergenic |
| CAATGTTGGGAAAGTGCGAC+AGG | 0.529138 | 6_3:-15823127 | None:intergenic |
| AGACACGTCGAAGCAATGTT+GGG | 0.531684 | 6_3:-15823140 | None:intergenic |
| CTGAAGCTGTAAGGGGATGA+TGG | 0.543812 | 6_3:+15822953 | Msa0941810:intron |
| ATGTGTGGAGGAGTTCATGC+CGG | 0.544045 | 6_3:+15823222 | Msa0941810:CDS |
| TTACTATCACAGGTTGCCAC+CGG | 0.545863 | 6_3:+15822611 | Msa0941810:intron |
| TCTGATATCTGAAGCTGTAA+GGG | 0.547002 | 6_3:+15822945 | Msa0941810:intron |
| TATCTGCGACTGCAGAATTG+AGG | 0.550213 | 6_3:+15823487 | Msa0941810:CDS |
| ACAATCAACTTACTCCATGT+TGG | 0.550639 | 6_3:-15822675 | None:intergenic |
| CTGAAAGGCCTGTATGTAGC+GGG | 0.552017 | 6_3:+15823264 | Msa0941810:CDS |
| ACCAAACAAACGATGAGCAT+TGG | 0.553402 | 6_3:-15821614 | None:intergenic |
| TGATGGTGGCATCCTTGGAA+AGG | 0.553458 | 6_3:+15822970 | Msa0941810:CDS |
| CTACCTCACCCGCTACATAC+AGG | 0.558882 | 6_3:-15823272 | None:intergenic |
| TGTGTGGAGGAGTTCATGCC+GGG | 0.559044 | 6_3:+15823223 | Msa0941810:CDS |
| AAATTTATGGCCAAGACCTA+CGG | 0.571747 | 6_3:+15823425 | Msa0941810:CDS |
| TTTACTATGTTGGAATAGTG+AGG | 0.585874 | 6_3:+15823532 | Msa0941810:CDS |
| TGGAAATCACAGCTTGAGCT+CGG | 0.595418 | 6_3:-15822655 | None:intergenic |
| CACACATGTAATGAGCAGCT+TGG | 0.599627 | 6_3:-15823206 | None:intergenic |
| CACCGGAGATGGAATTGCAA+TGG | 0.601846 | 6_3:+15822628 | Msa0941810:CDS |
| CTGATATCTGAAGCTGTAAG+GGG | 0.603494 | 6_3:+15822946 | Msa0941810:intron |
| CTTCTTGCGACTACATCCCT+AGG | 0.603957 | 6_3:-15823029 | None:intergenic |
| ATAAAGTCGATTGATGATGA+TGG | 0.608054 | 6_3:+15821658 | Msa0941810:CDS |
| TCTCCCCTTGTATCATGCAA+AGG | 0.609506 | 6_3:-15822999 | None:intergenic |
| TAATGAGCAGCTTGGAACAA+CGG | 0.610779 | 6_3:-15823198 | None:intergenic |
| CAAGGAGAGACAAATCTGAA+AGG | 0.611847 | 6_3:+15823249 | Msa0941810:CDS |
| TTTGTTTGGTATTTCCAACA+TGG | 0.612102 | 6_3:+15821627 | Msa0941810:CDS |
| CAAGCTGCTCATTACATGTG+TGG | 0.612510 | 6_3:+15823207 | Msa0941810:CDS |
| TTTGCCTTTGCATGATACAA+GGG | 0.616124 | 6_3:+15822995 | Msa0941810:CDS |
| CCAAGTGAAAACGGCACCGT+AGG | 0.618506 | 6_3:-15823441 | None:intergenic |
| TTGCCTTTGCATGATACAAG+GGG | 0.621259 | 6_3:+15822996 | Msa0941810:CDS |
| CATTGCAATTCCATCTCCGG+TGG | 0.647326 | 6_3:-15822627 | None:intergenic |
| TCAAGCTGTGATTTCCAACA+TGG | 0.648712 | 6_3:+15822661 | Msa0941810:CDS |
| TCTGAAAGGCCTGTATGTAG+CGG | 0.649072 | 6_3:+15823263 | Msa0941810:CDS |
| GCTGCTCATTACATGTGTGG+AGG | 0.669706 | 6_3:+15823210 | Msa0941810:CDS |
| GAATAGTGAGGTCAACAATG+TGG | 0.686677 | 6_3:+15823544 | Msa0941810:CDS |
| ATGAGCAGCTTGGAACAACG+GGG | 0.763723 | 6_3:-15823196 | None:intergenic |
| AAGCTGTAAGGGGATGATGG+TGG | 0.769785 | 6_3:+15822956 | Msa0941810:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTATTTTTTTGAG+AGG | - | chr6_3:15821915-15821934 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTATTTTTTTGAG+AGG | - | chr6_3:15821915-15821934 | None:intergenic | 10.0% |
| !! | AAATAGAATTAAAAGATAAG+AGG | - | chr6_3:15821812-15821831 | None:intergenic | 15.0% |
| !! | TGATATTAAATACCTAAAAA+TGG | - | chr6_3:15821853-15821872 | None:intergenic | 15.0% |
| !!! | CTTTTTCTAAAAATCATTAT+CGG | + | chr6_3:15822854-15822873 | Msa0941810:intron | 15.0% |
| !! | AAATAGAATTAAAAGATAAG+AGG | - | chr6_3:15821812-15821831 | None:intergenic | 15.0% |
| !! | TGATATTAAATACCTAAAAA+TGG | - | chr6_3:15821853-15821872 | None:intergenic | 15.0% |
| !!! | CTTTTTCTAAAAATCATTAT+CGG | + | chr6_3:15822854-15822873 | Msa0941810:intron | 15.0% |
| !!! | TAAAGTTGAATTTGTTGAAA+AGG | - | chr6_3:15821769-15821788 | None:intergenic | 20.0% |
| !!! | TTTAATTCTATTTTTCTGCT+TGG | + | chr6_3:15821819-15821838 | Msa0941810:intron | 20.0% |
| !! | AAAAATAGAATAATCTAGCA+TGG | + | chr6_3:15821885-15821904 | Msa0941810:intron | 20.0% |
| !!! | CGATAATGATTTTTAGAAAA+AGG | - | chr6_3:15822856-15822875 | None:intergenic | 20.0% |
| !!! | TAAAGTTGAATTTGTTGAAA+AGG | - | chr6_3:15821769-15821788 | None:intergenic | 20.0% |
| !!! | TTTAATTCTATTTTTCTGCT+TGG | + | chr6_3:15821819-15821838 | Msa0941810:intron | 20.0% |
| !! | AAAAATAGAATAATCTAGCA+TGG | + | chr6_3:15821885-15821904 | Msa0941810:intron | 20.0% |
| !!! | CGATAATGATTTTTAGAAAA+AGG | - | chr6_3:15822856-15822875 | None:intergenic | 20.0% |
| !!! | GAAGTTGATTATTTTTGAGT+CGG | + | chr6_3:15821699-15821718 | Msa0941810:CDS | 25.0% |
| !!! | TTGGCTTATTTTCCATTTTT+AGG | + | chr6_3:15821838-15821857 | Msa0941810:intron | 25.0% |
| ! | ATTATTGAGTAATCATCAAG+TGG | + | chr6_3:15821976-15821995 | Msa0941810:intron | 25.0% |
| !! | AATGACAAAATCAAAGTGTT+CGG | - | chr6_3:15822276-15822295 | None:intergenic | 25.0% |
| ! | TAAAAATGCCATATTTGCAT+TGG | + | chr6_3:15822386-15822405 | Msa0941810:intron | 25.0% |
| ! | TATAATGACCAATGCAAATA+TGG | - | chr6_3:15822397-15822416 | None:intergenic | 25.0% |
| ! | ATTTGTATCTTACGATTCAT+AGG | + | chr6_3:15822416-15822435 | Msa0941810:intron | 25.0% |
| ! | AAAAATGAACCATCTTGTTA+TGG | + | chr6_3:15822497-15822516 | Msa0941810:intron | 25.0% |
| !!! | AGAATTTACTTTTCTATTCG+AGG | - | chr6_3:15822708-15822727 | None:intergenic | 25.0% |
| !! | TCTATCATGTTTTACTATGT+TGG | + | chr6_3:15823522-15823541 | Msa0941810:CDS | 25.0% |
| !!! | GAAGTTGATTATTTTTGAGT+CGG | + | chr6_3:15821699-15821718 | Msa0941810:CDS | 25.0% |
| !!! | TTGGCTTATTTTCCATTTTT+AGG | + | chr6_3:15821838-15821857 | Msa0941810:intron | 25.0% |
| ! | ATTATTGAGTAATCATCAAG+TGG | + | chr6_3:15821976-15821995 | Msa0941810:intron | 25.0% |
| !! | AATGACAAAATCAAAGTGTT+CGG | - | chr6_3:15822276-15822295 | None:intergenic | 25.0% |
| ! | TAAAAATGCCATATTTGCAT+TGG | + | chr6_3:15822386-15822405 | Msa0941810:intron | 25.0% |
| ! | TATAATGACCAATGCAAATA+TGG | - | chr6_3:15822397-15822416 | None:intergenic | 25.0% |
| ! | ATTTGTATCTTACGATTCAT+AGG | + | chr6_3:15822416-15822435 | Msa0941810:intron | 25.0% |
| ! | AAAAATGAACCATCTTGTTA+TGG | + | chr6_3:15822497-15822516 | Msa0941810:intron | 25.0% |
| !!! | AGAATTTACTTTTCTATTCG+AGG | - | chr6_3:15822708-15822727 | None:intergenic | 25.0% |
| !! | TCTATCATGTTTTACTATGT+TGG | + | chr6_3:15823522-15823541 | Msa0941810:CDS | 25.0% |
| TTTGTTTGGTATTTCCAACA+TGG | + | chr6_3:15821627-15821646 | Msa0941810:CDS | 30.0% | |
| !! | ATAAAGTCGATTGATGATGA+TGG | + | chr6_3:15821658-15821677 | Msa0941810:CDS | 30.0% |
| AATGAATCACTACCTAAACT+TGG | + | chr6_3:15822195-15822214 | Msa0941810:intron | 30.0% | |
| ! | ACTTGAATCTTGAACTTTTG+AGG | + | chr6_3:15822305-15822324 | Msa0941810:intron | 30.0% |
| !! | CAGTTTTATCATATCAAGCA+TGG | - | chr6_3:15822477-15822496 | None:intergenic | 30.0% |
| ATTCCATTAGTGAAGGAATA+AGG | + | chr6_3:15822758-15822777 | Msa0941810:intron | 30.0% | |
| TATCCTTATTCCTTCACTAA+TGG | - | chr6_3:15822764-15822783 | None:intergenic | 30.0% | |
| ACCAGAATGCATCAAATTTA+TGG | + | chr6_3:15823412-15823431 | Msa0941810:CDS | 30.0% | |
| TTTACTATGTTGGAATAGTG+AGG | + | chr6_3:15823532-15823551 | Msa0941810:CDS | 30.0% | |
| TTTGTTTGGTATTTCCAACA+TGG | + | chr6_3:15821627-15821646 | Msa0941810:CDS | 30.0% | |
| !! | ATAAAGTCGATTGATGATGA+TGG | + | chr6_3:15821658-15821677 | Msa0941810:CDS | 30.0% |
| AATGAATCACTACCTAAACT+TGG | + | chr6_3:15822195-15822214 | Msa0941810:intron | 30.0% | |
| ! | ACTTGAATCTTGAACTTTTG+AGG | + | chr6_3:15822305-15822324 | Msa0941810:intron | 30.0% |
| !! | CAGTTTTATCATATCAAGCA+TGG | - | chr6_3:15822477-15822496 | None:intergenic | 30.0% |
| ATTCCATTAGTGAAGGAATA+AGG | + | chr6_3:15822758-15822777 | Msa0941810:intron | 30.0% | |
| TATCCTTATTCCTTCACTAA+TGG | - | chr6_3:15822764-15822783 | None:intergenic | 30.0% | |
| ACCAGAATGCATCAAATTTA+TGG | + | chr6_3:15823412-15823431 | Msa0941810:CDS | 30.0% | |
| TTTACTATGTTGGAATAGTG+AGG | + | chr6_3:15823532-15823551 | Msa0941810:CDS | 30.0% | |
| CTTTATCATCTTCACCATGT+TGG | - | chr6_3:15821644-15821663 | None:intergenic | 35.0% | |
| TTTGTTGAAAAGGCCATGTT+TGG | - | chr6_3:15821759-15821778 | None:intergenic | 35.0% | |
| !! | TCAAGTATCGACACTACAAA+GGG | - | chr6_3:15822011-15822030 | None:intergenic | 35.0% |
| !! | ATCAAGTATCGACACTACAA+AGG | - | chr6_3:15822012-15822031 | None:intergenic | 35.0% |
| AACAACAACAAAAAAGTCGC+TGG | - | chr6_3:15822226-15822245 | None:intergenic | 35.0% | |
| ATGCAACAACCATAACAAGA+TGG | - | chr6_3:15822509-15822528 | None:intergenic | 35.0% | |
| !! | GACATGCTTTTTACTATCAC+AGG | + | chr6_3:15822601-15822620 | Msa0941810:intron | 35.0% |
| ACAATCAACTTACTCCATGT+TGG | - | chr6_3:15822678-15822697 | None:intergenic | 35.0% | |
| AGTGCTTATTCCATTAGTGA+AGG | + | chr6_3:15822751-15822770 | Msa0941810:intron | 35.0% | |
| ATCAGAAATGCATTATCCCT+AGG | - | chr6_3:15822931-15822950 | None:intergenic | 35.0% | |
| ! | TTCTGATATCTGAAGCTGTA+AGG | + | chr6_3:15822944-15822963 | Msa0941810:intron | 35.0% |
| ! | TCTGATATCTGAAGCTGTAA+GGG | + | chr6_3:15822945-15822964 | Msa0941810:intron | 35.0% |
| ! | TTTTGCCTTTGCATGATACA+AGG | + | chr6_3:15822994-15823013 | Msa0941810:CDS | 35.0% |
| TTTGCCTTTGCATGATACAA+GGG | + | chr6_3:15822995-15823014 | Msa0941810:CDS | 35.0% | |
| !!! | TTTCGTTGCGCTTTTTAAGT+TGG | - | chr6_3:15823064-15823083 | None:intergenic | 35.0% |
| !! | GGATTTCATTCTTTGGTTTG+TGG | - | chr6_3:15823109-15823128 | None:intergenic | 35.0% |
| GCCATAAATTTGATGCATTC+TGG | - | chr6_3:15823416-15823435 | None:intergenic | 35.0% | |
| AAATTTATGGCCAAGACCTA+CGG | + | chr6_3:15823425-15823444 | Msa0941810:CDS | 35.0% | |
| GCATTACTTCCAAGTGAAAA+CGG | - | chr6_3:15823453-15823472 | None:intergenic | 35.0% | |
| ! | CGCAGATAATATTTTGTCGA+TGG | - | chr6_3:15823475-15823494 | None:intergenic | 35.0% |
| CTTTATCATCTTCACCATGT+TGG | - | chr6_3:15821644-15821663 | None:intergenic | 35.0% | |
| TTTGTTGAAAAGGCCATGTT+TGG | - | chr6_3:15821759-15821778 | None:intergenic | 35.0% | |
| !! | TCAAGTATCGACACTACAAA+GGG | - | chr6_3:15822011-15822030 | None:intergenic | 35.0% |
| !! | ATCAAGTATCGACACTACAA+AGG | - | chr6_3:15822012-15822031 | None:intergenic | 35.0% |
| AACAACAACAAAAAAGTCGC+TGG | - | chr6_3:15822226-15822245 | None:intergenic | 35.0% | |
| ATGCAACAACCATAACAAGA+TGG | - | chr6_3:15822509-15822528 | None:intergenic | 35.0% | |
| !! | GACATGCTTTTTACTATCAC+AGG | + | chr6_3:15822601-15822620 | Msa0941810:intron | 35.0% |
| ACAATCAACTTACTCCATGT+TGG | - | chr6_3:15822678-15822697 | None:intergenic | 35.0% | |
| AGTGCTTATTCCATTAGTGA+AGG | + | chr6_3:15822751-15822770 | Msa0941810:intron | 35.0% | |
| ATCAGAAATGCATTATCCCT+AGG | - | chr6_3:15822931-15822950 | None:intergenic | 35.0% | |
| ! | TTCTGATATCTGAAGCTGTA+AGG | + | chr6_3:15822944-15822963 | Msa0941810:intron | 35.0% |
| ! | TCTGATATCTGAAGCTGTAA+GGG | + | chr6_3:15822945-15822964 | Msa0941810:intron | 35.0% |
| ! | TTTTGCCTTTGCATGATACA+AGG | + | chr6_3:15822994-15823013 | Msa0941810:CDS | 35.0% |
| TTTGCCTTTGCATGATACAA+GGG | + | chr6_3:15822995-15823014 | Msa0941810:CDS | 35.0% | |
| !!! | TTTCGTTGCGCTTTTTAAGT+TGG | - | chr6_3:15823064-15823083 | None:intergenic | 35.0% |
| !! | GGATTTCATTCTTTGGTTTG+TGG | - | chr6_3:15823109-15823128 | None:intergenic | 35.0% |
| GCCATAAATTTGATGCATTC+TGG | - | chr6_3:15823416-15823435 | None:intergenic | 35.0% | |
| AAATTTATGGCCAAGACCTA+CGG | + | chr6_3:15823425-15823444 | Msa0941810:CDS | 35.0% | |
| GCATTACTTCCAAGTGAAAA+CGG | - | chr6_3:15823453-15823472 | None:intergenic | 35.0% | |
| ! | CGCAGATAATATTTTGTCGA+TGG | - | chr6_3:15823475-15823494 | None:intergenic | 35.0% |
| ACCAAACAAACGATGAGCAT+TGG | - | chr6_3:15821617-15821636 | None:intergenic | 40.0% | |
| AATGCAGTTTGACTGCATTC+TGG | + | chr6_3:15821952-15821971 | Msa0941810:intron | 40.0% | |
| !! | AGTGTCGATACTTGATAGCA+TGG | + | chr6_3:15822016-15822035 | Msa0941810:intron | 40.0% |
| GCTGTATCACTTGTATTGCA+TGG | + | chr6_3:15822554-15822573 | Msa0941810:intron | 40.0% | |
| TCAAGCTGTGATTTCCAACA+TGG | + | chr6_3:15822661-15822680 | Msa0941810:CDS | 40.0% | |
| CTAAAAATCATTATCGGCGC+AGG | + | chr6_3:15822860-15822879 | Msa0941810:intron | 40.0% | |
| AAATGCATTATCCCTAGGCT+CGG | - | chr6_3:15822926-15822945 | None:intergenic | 40.0% | |
| ! | CTGATATCTGAAGCTGTAAG+GGG | + | chr6_3:15822946-15822965 | Msa0941810:intron | 40.0% |
| CAAAGGCAAAAACCTTTCCA+AGG | - | chr6_3:15822985-15823004 | None:intergenic | 40.0% | |
| TTGCCTTTGCATGATACAAG+GGG | + | chr6_3:15822996-15823015 | Msa0941810:CDS | 40.0% | |
| !! | TTGGTTTGTGGCTAATGTCA+AGG | - | chr6_3:15823097-15823116 | None:intergenic | 40.0% |
| TGCGACAGGATTTCATTCTT+TGG | - | chr6_3:15823116-15823135 | None:intergenic | 40.0% | |
| GACGTGTCTTCAATATGGTT+TGG | + | chr6_3:15823154-15823173 | Msa0941810:CDS | 40.0% | |
| TAATGAGCAGCTTGGAACAA+CGG | - | chr6_3:15823201-15823220 | None:intergenic | 40.0% | |
| CTTTCAGATTTGTCTCTCCT+TGG | - | chr6_3:15823251-15823270 | None:intergenic | 40.0% | |
| CAAGGAGAGACAAATCTGAA+AGG | + | chr6_3:15823249-15823268 | Msa0941810:CDS | 40.0% | |
| TCTATTTGCTCCATGTAGAC+TGG | - | chr6_3:15823304-15823323 | None:intergenic | 40.0% | |
| AATTTGATGCATTCTGGTCG+AGG | - | chr6_3:15823410-15823429 | None:intergenic | 40.0% | |
| GAATAGTGAGGTCAACAATG+TGG | + | chr6_3:15823544-15823563 | Msa0941810:CDS | 40.0% | |
| ACCAAACAAACGATGAGCAT+TGG | - | chr6_3:15821617-15821636 | None:intergenic | 40.0% | |
| AATGCAGTTTGACTGCATTC+TGG | + | chr6_3:15821952-15821971 | Msa0941810:intron | 40.0% | |
| !! | AGTGTCGATACTTGATAGCA+TGG | + | chr6_3:15822016-15822035 | Msa0941810:intron | 40.0% |
| GCTGTATCACTTGTATTGCA+TGG | + | chr6_3:15822554-15822573 | Msa0941810:intron | 40.0% | |
| TCAAGCTGTGATTTCCAACA+TGG | + | chr6_3:15822661-15822680 | Msa0941810:CDS | 40.0% | |
| CTAAAAATCATTATCGGCGC+AGG | + | chr6_3:15822860-15822879 | Msa0941810:intron | 40.0% | |
| AAATGCATTATCCCTAGGCT+CGG | - | chr6_3:15822926-15822945 | None:intergenic | 40.0% | |
| ! | CTGATATCTGAAGCTGTAAG+GGG | + | chr6_3:15822946-15822965 | Msa0941810:intron | 40.0% |
| CAAAGGCAAAAACCTTTCCA+AGG | - | chr6_3:15822985-15823004 | None:intergenic | 40.0% | |
| TTGCCTTTGCATGATACAAG+GGG | + | chr6_3:15822996-15823015 | Msa0941810:CDS | 40.0% | |
| !! | TTGGTTTGTGGCTAATGTCA+AGG | - | chr6_3:15823097-15823116 | None:intergenic | 40.0% |
| TGCGACAGGATTTCATTCTT+TGG | - | chr6_3:15823116-15823135 | None:intergenic | 40.0% | |
| GACGTGTCTTCAATATGGTT+TGG | + | chr6_3:15823154-15823173 | Msa0941810:CDS | 40.0% | |
| TAATGAGCAGCTTGGAACAA+CGG | - | chr6_3:15823201-15823220 | None:intergenic | 40.0% | |
| CTTTCAGATTTGTCTCTCCT+TGG | - | chr6_3:15823251-15823270 | None:intergenic | 40.0% | |
| CAAGGAGAGACAAATCTGAA+AGG | + | chr6_3:15823249-15823268 | Msa0941810:CDS | 40.0% | |
| TCTATTTGCTCCATGTAGAC+TGG | - | chr6_3:15823304-15823323 | None:intergenic | 40.0% | |
| AATTTGATGCATTCTGGTCG+AGG | - | chr6_3:15823410-15823429 | None:intergenic | 40.0% | |
| GAATAGTGAGGTCAACAATG+TGG | + | chr6_3:15823544-15823563 | Msa0941810:CDS | 40.0% | |
| GCCAATGCTCATCGTTTGTT+TGG | + | chr6_3:15821613-15821632 | Msa0941810:CDS | 45.0% | |
| GTTTGGAGACATGCTTGACT+TGG | - | chr6_3:15821742-15821761 | None:intergenic | 45.0% | |
| GTCAAGCATGTCTCCAAACA+TGG | + | chr6_3:15821743-15821762 | Msa0941810:intron | 45.0% | |
| ! | TCGCTGGCTATACCAAGTTT+AGG | - | chr6_3:15822210-15822229 | None:intergenic | 45.0% |
| TTACTATCACAGGTTGCCAC+CGG | + | chr6_3:15822611-15822630 | Msa0941810:intron | 45.0% | |
| TGCCATTGCAATTCCATCTC+CGG | - | chr6_3:15822633-15822652 | None:intergenic | 45.0% | |
| TGGAAATCACAGCTTGAGCT+CGG | - | chr6_3:15822658-15822677 | None:intergenic | 45.0% | |
| GGTTTAACAGCTAACGCAGT+CGG | - | chr6_3:15822901-15822920 | None:intergenic | 45.0% | |
| TGTTAAACCAACCGAGCCTA+GGG | + | chr6_3:15822912-15822931 | Msa0941810:intron | 45.0% | |
| TCTCCCCTTGTATCATGCAA+AGG | - | chr6_3:15823002-15823021 | None:intergenic | 45.0% | |
| AGACACGTCGAAGCAATGTT+GGG | - | chr6_3:15823143-15823162 | None:intergenic | 45.0% | |
| AAGACACGTCGAAGCAATGT+TGG | - | chr6_3:15823144-15823163 | None:intergenic | 45.0% | |
| GCTTCGACGTGTCTTCAATA+TGG | + | chr6_3:15823149-15823168 | Msa0941810:CDS | 45.0% | |
| AATGAGCAGCTTGGAACAAC+GGG | - | chr6_3:15823200-15823219 | None:intergenic | 45.0% | |
| CACACATGTAATGAGCAGCT+TGG | - | chr6_3:15823209-15823228 | None:intergenic | 45.0% | |
| CAAGCTGCTCATTACATGTG+TGG | + | chr6_3:15823207-15823226 | Msa0941810:CDS | 45.0% | |
| TCTGAAAGGCCTGTATGTAG+CGG | + | chr6_3:15823263-15823282 | Msa0941810:CDS | 45.0% | |
| GTAGCATGTACCAGTCTACA+TGG | + | chr6_3:15823291-15823310 | Msa0941810:intron | 45.0% | |
| TATCTGCGACTGCAGAATTG+AGG | + | chr6_3:15823487-15823506 | Msa0941810:CDS | 45.0% | |
| GCCAATGCTCATCGTTTGTT+TGG | + | chr6_3:15821613-15821632 | Msa0941810:CDS | 45.0% | |
| GTTTGGAGACATGCTTGACT+TGG | - | chr6_3:15821742-15821761 | None:intergenic | 45.0% | |
| GTCAAGCATGTCTCCAAACA+TGG | + | chr6_3:15821743-15821762 | Msa0941810:intron | 45.0% | |
| ! | TCGCTGGCTATACCAAGTTT+AGG | - | chr6_3:15822210-15822229 | None:intergenic | 45.0% |
| TTACTATCACAGGTTGCCAC+CGG | + | chr6_3:15822611-15822630 | Msa0941810:intron | 45.0% | |
| TGCCATTGCAATTCCATCTC+CGG | - | chr6_3:15822633-15822652 | None:intergenic | 45.0% | |
| TGGAAATCACAGCTTGAGCT+CGG | - | chr6_3:15822658-15822677 | None:intergenic | 45.0% | |
| GGTTTAACAGCTAACGCAGT+CGG | - | chr6_3:15822901-15822920 | None:intergenic | 45.0% | |
| TGTTAAACCAACCGAGCCTA+GGG | + | chr6_3:15822912-15822931 | Msa0941810:intron | 45.0% | |
| TCTCCCCTTGTATCATGCAA+AGG | - | chr6_3:15823002-15823021 | None:intergenic | 45.0% | |
| AGACACGTCGAAGCAATGTT+GGG | - | chr6_3:15823143-15823162 | None:intergenic | 45.0% | |
| AAGACACGTCGAAGCAATGT+TGG | - | chr6_3:15823144-15823163 | None:intergenic | 45.0% | |
| GCTTCGACGTGTCTTCAATA+TGG | + | chr6_3:15823149-15823168 | Msa0941810:CDS | 45.0% | |
| AATGAGCAGCTTGGAACAAC+GGG | - | chr6_3:15823200-15823219 | None:intergenic | 45.0% | |
| CACACATGTAATGAGCAGCT+TGG | - | chr6_3:15823209-15823228 | None:intergenic | 45.0% | |
| CAAGCTGCTCATTACATGTG+TGG | + | chr6_3:15823207-15823226 | Msa0941810:CDS | 45.0% | |
| TCTGAAAGGCCTGTATGTAG+CGG | + | chr6_3:15823263-15823282 | Msa0941810:CDS | 45.0% | |
| GTAGCATGTACCAGTCTACA+TGG | + | chr6_3:15823291-15823310 | Msa0941810:intron | 45.0% | |
| TATCTGCGACTGCAGAATTG+AGG | + | chr6_3:15823487-15823506 | Msa0941810:CDS | 45.0% | |
| CATTGCAATTCCATCTCCGG+TGG | - | chr6_3:15822630-15822649 | None:intergenic | 50.0% | |
| CACCGGAGATGGAATTGCAA+TGG | + | chr6_3:15822628-15822647 | Msa0941810:CDS | 50.0% | |
| TAACAGCTAACGCAGTCGGA+TGG | - | chr6_3:15822897-15822916 | None:intergenic | 50.0% | |
| CTGTTAAACCAACCGAGCCT+AGG | + | chr6_3:15822911-15822930 | Msa0941810:intron | 50.0% | |
| CTGAAGCTGTAAGGGGATGA+TGG | + | chr6_3:15822953-15822972 | Msa0941810:intron | 50.0% | |
| ! | AAGCTGTAAGGGGATGATGG+TGG | + | chr6_3:15822956-15822975 | Msa0941810:intron | 50.0% |
| !! | TGATGGTGGCATCCTTGGAA+AGG | + | chr6_3:15822970-15822989 | Msa0941810:CDS | 50.0% |
| CTTCTTGCGACTACATCCCT+AGG | - | chr6_3:15823032-15823051 | None:intergenic | 50.0% | |
| ! | CAATGTTGGGAAAGTGCGAC+AGG | - | chr6_3:15823130-15823149 | None:intergenic | 50.0% |
| ATGAGCAGCTTGGAACAACG+GGG | - | chr6_3:15823199-15823218 | None:intergenic | 50.0% | |
| GCTGCTCATTACATGTGTGG+AGG | + | chr6_3:15823210-15823229 | Msa0941810:CDS | 50.0% | |
| ATGTGTGGAGGAGTTCATGC+CGG | + | chr6_3:15823222-15823241 | Msa0941810:CDS | 50.0% | |
| ATTTGTCTCTCCTTGGAGCC+CGG | - | chr6_3:15823244-15823263 | None:intergenic | 50.0% | |
| CTGAAAGGCCTGTATGTAGC+GGG | + | chr6_3:15823264-15823283 | Msa0941810:CDS | 50.0% | |
| AGCTAGCAACTCATTGCTCG+AGG | + | chr6_3:15823326-15823345 | Msa0941810:intron | 50.0% | |
| CATTGCAATTCCATCTCCGG+TGG | - | chr6_3:15822630-15822649 | None:intergenic | 50.0% | |
| CACCGGAGATGGAATTGCAA+TGG | + | chr6_3:15822628-15822647 | Msa0941810:CDS | 50.0% | |
| TAACAGCTAACGCAGTCGGA+TGG | - | chr6_3:15822897-15822916 | None:intergenic | 50.0% | |
| CTGTTAAACCAACCGAGCCT+AGG | + | chr6_3:15822911-15822930 | Msa0941810:intron | 50.0% | |
| CTGAAGCTGTAAGGGGATGA+TGG | + | chr6_3:15822953-15822972 | Msa0941810:intron | 50.0% | |
| ! | AAGCTGTAAGGGGATGATGG+TGG | + | chr6_3:15822956-15822975 | Msa0941810:intron | 50.0% |
| !! | TGATGGTGGCATCCTTGGAA+AGG | + | chr6_3:15822970-15822989 | Msa0941810:CDS | 50.0% |
| CTTCTTGCGACTACATCCCT+AGG | - | chr6_3:15823032-15823051 | None:intergenic | 50.0% | |
| ! | CAATGTTGGGAAAGTGCGAC+AGG | - | chr6_3:15823130-15823149 | None:intergenic | 50.0% |
| ATGAGCAGCTTGGAACAACG+GGG | - | chr6_3:15823199-15823218 | None:intergenic | 50.0% | |
| GCTGCTCATTACATGTGTGG+AGG | + | chr6_3:15823210-15823229 | Msa0941810:CDS | 50.0% | |
| ATGTGTGGAGGAGTTCATGC+CGG | + | chr6_3:15823222-15823241 | Msa0941810:CDS | 50.0% | |
| ATTTGTCTCTCCTTGGAGCC+CGG | - | chr6_3:15823244-15823263 | None:intergenic | 50.0% | |
| CTGAAAGGCCTGTATGTAGC+GGG | + | chr6_3:15823264-15823283 | Msa0941810:CDS | 50.0% | |
| AGCTAGCAACTCATTGCTCG+AGG | + | chr6_3:15823326-15823345 | Msa0941810:intron | 50.0% | |
| ! | GCATTATCCCTAGGCTCGGT+TGG | - | chr6_3:15822922-15822941 | None:intergenic | 55.0% |
| ! | AAGGGGAGAGCTTGCTCCTA+GGG | + | chr6_3:15823013-15823032 | Msa0941810:CDS | 55.0% |
| CAGCTTGGAACAACGGGGAT+TGG | - | chr6_3:15823194-15823213 | None:intergenic | 55.0% | |
| TGTGTGGAGGAGTTCATGCC+GGG | + | chr6_3:15823223-15823242 | Msa0941810:CDS | 55.0% | |
| CTACCTCACCCGCTACATAC+AGG | - | chr6_3:15823275-15823294 | None:intergenic | 55.0% | |
| GAAAACGGCACCGTAGGTCT+TGG | - | chr6_3:15823438-15823457 | None:intergenic | 55.0% | |
| CCAAGTGAAAACGGCACCGT+AGG | - | chr6_3:15823444-15823463 | None:intergenic | 55.0% | |
| !!! | CCTACGGTGCCGTTTTCACT+TGG | + | chr6_3:15823441-15823460 | Msa0941810:CDS | 55.0% |
| ! | GCATTATCCCTAGGCTCGGT+TGG | - | chr6_3:15822922-15822941 | None:intergenic | 55.0% |
| ! | AAGGGGAGAGCTTGCTCCTA+GGG | + | chr6_3:15823013-15823032 | Msa0941810:CDS | 55.0% |
| CAGCTTGGAACAACGGGGAT+TGG | - | chr6_3:15823194-15823213 | None:intergenic | 55.0% | |
| TGTGTGGAGGAGTTCATGCC+GGG | + | chr6_3:15823223-15823242 | Msa0941810:CDS | 55.0% | |
| CTACCTCACCCGCTACATAC+AGG | - | chr6_3:15823275-15823294 | None:intergenic | 55.0% | |
| GAAAACGGCACCGTAGGTCT+TGG | - | chr6_3:15823438-15823457 | None:intergenic | 55.0% | |
| CCAAGTGAAAACGGCACCGT+AGG | - | chr6_3:15823444-15823463 | None:intergenic | 55.0% | |
| !!! | CCTACGGTGCCGTTTTCACT+TGG | + | chr6_3:15823441-15823460 | Msa0941810:CDS | 55.0% |
| TCACAGGTTGCCACCGGAGA+TGG | + | chr6_3:15822617-15822636 | Msa0941810:intron | 60.0% | |
| !! | GGGGATGATGGTGGCATCCT+TGG | + | chr6_3:15822965-15822984 | Msa0941810:CDS | 60.0% |
| ! | CAAGGGGAGAGCTTGCTCCT+AGG | + | chr6_3:15823012-15823031 | Msa0941810:CDS | 60.0% |
| !! | AGGCCTGTATGTAGCGGGTG+AGG | + | chr6_3:15823269-15823288 | Msa0941810:intron | 60.0% |
| TCACAGGTTGCCACCGGAGA+TGG | + | chr6_3:15822617-15822636 | Msa0941810:intron | 60.0% | |
| !! | GGGGATGATGGTGGCATCCT+TGG | + | chr6_3:15822965-15822984 | Msa0941810:CDS | 60.0% |
| ! | CAAGGGGAGAGCTTGCTCCT+AGG | + | chr6_3:15823012-15823031 | Msa0941810:CDS | 60.0% |
| !! | AGGCCTGTATGTAGCGGGTG+AGG | + | chr6_3:15823269-15823288 | Msa0941810:intron | 60.0% |
| GGAGTTCATGCCGGGCTCCA+AGG | + | chr6_3:15823231-15823250 | Msa0941810:CDS | 65.0% | |
| GGAGTTCATGCCGGGCTCCA+AGG | + | chr6_3:15823231-15823250 | Msa0941810:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 15821607 | 15823653 | 15821607 | ID=Msa0941810;Name=Msa0941810 |
| chr6_3 | mRNA | 15821607 | 15823653 | 15821607 | ID=Msa0941810-mRNA-1;Parent=Msa0941810;Name=Msa0941810-mRNA-1;_AED=0.26;_eAED=0.36;_QI=0|0|0|0.75|1|1|4|0|271 |
| chr6_3 | exon | 15821607 | 15821747 | 15821607 | ID=Msa0941810-mRNA-1:exon:4869;Parent=Msa0941810-mRNA-1 |
| chr6_3 | exon | 15822623 | 15822684 | 15822623 | ID=Msa0941810-mRNA-1:exon:4870;Parent=Msa0941810-mRNA-1 |
| chr6_3 | exon | 15822959 | 15823285 | 15822959 | ID=Msa0941810-mRNA-1:exon:4871;Parent=Msa0941810-mRNA-1 |
| chr6_3 | exon | 15823368 | 15823653 | 15823368 | ID=Msa0941810-mRNA-1:exon:4872;Parent=Msa0941810-mRNA-1 |
| chr6_3 | CDS | 15821607 | 15821747 | 15821607 | ID=Msa0941810-mRNA-1:cds;Parent=Msa0941810-mRNA-1 |
| chr6_3 | CDS | 15822623 | 15822684 | 15822623 | ID=Msa0941810-mRNA-1:cds;Parent=Msa0941810-mRNA-1 |
| chr6_3 | CDS | 15822959 | 15823285 | 15822959 | ID=Msa0941810-mRNA-1:cds;Parent=Msa0941810-mRNA-1 |
| chr6_3 | CDS | 15823368 | 15823653 | 15823368 | ID=Msa0941810-mRNA-1:cds;Parent=Msa0941810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
