AlfalfaGEDB | Msa0941810

M. sativa cultivar zhongmu-4 / Msa0941810

KEGG: K00278
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009165 GO:0009435 GO:0009507 GO:0009536 GO:0009987 GO:0018130 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019637 GO:0019674 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046496 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072524 GO:0072525 GO:0090407 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576
PFAM: PF03195.17

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0941810	KEH24833.1	60.300	267	40	5	48	250	113	377	1.20e-90	286

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0941810	sp\|Q94AY1\|NADB_ARATH	45.725	269	78	6	48	250	288	554	1.20e-61	208

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0941810	TF	LOB

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0941810	MtrunA17_Chr6g0450691	60.300	267	40	5	48	250	325	589	2.94e-92	286
Msa0941810	MtrunA17_Chr6g0449311	76.471	51	12	0	1	51	1	51	4.56e-19	81.3
Msa0941810	MtrunA17_Chr4g0055441	70.213	47	14	0	5	51	34	80	1.51e-14	69.7

Showing 1 to 3 of 3 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0941810	AT5G14760.1	45.725	269	78	6	48	250	288	554	1.22e-62	208

Showing 1 to 1 of 1 entries

Previous1Next

Find 61 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTTATGGCCAAGACCTA+CGG	0.571747	6_3:+15823425	Msa0941810:CDS
AAGACACGTCGAAGCAATGT+TGG	0.513821	6_3:-15823141	None:intergenic
AAGCTGTAAGGGGATGATGG+TGG	0.769785	6_3:+15822956	Msa0941810:intron
AAGGGGAGAGCTTGCTCCTA+GGG	0.497573	6_3:+15823013	Msa0941810:CDS
AATGAGCAGCTTGGAACAAC+GGG	0.400274	6_3:-15823197	None:intergenic
AATTTGATGCATTCTGGTCG+AGG	0.501302	6_3:-15823407	None:intergenic
ACAATCAACTTACTCCATGT+TGG	0.550639	6_3:-15822675	None:intergenic
ACCAAACAAACGATGAGCAT+TGG	0.553402	6_3:-15821614	None:intergenic
ACCAGAATGCATCAAATTTA+TGG	0.176011	6_3:+15823412	Msa0941810:CDS
AGACACGTCGAAGCAATGTT+GGG	0.531684	6_3:-15823140	None:intergenic

Showing 1 to 10 of 61 entries

Previous1 2 3 4 5 6 7Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TTTGTTTGGTATTTCCAACA+TGG	+	chr6_3:15821627-15821646	Msa0941810:CDS	30.0%
AATGAATCACTACCTAAACT+TGG	+	chr6_3:15822195-15822214	Msa0941810:intron	30.0%
ATTCCATTAGTGAAGGAATA+AGG	+	chr6_3:15822758-15822777	Msa0941810:intron	30.0%
TATCCTTATTCCTTCACTAA+TGG	-	chr6_3:15822764-15822783	None:intergenic	30.0%
ACCAGAATGCATCAAATTTA+TGG	+	chr6_3:15823412-15823431	Msa0941810:CDS	30.0%
TTTACTATGTTGGAATAGTG+AGG	+	chr6_3:15823532-15823551	Msa0941810:CDS	30.0%
TTTGTTTGGTATTTCCAACA+TGG	+	chr6_3:15821627-15821646	Msa0941810:CDS	30.0%
AATGAATCACTACCTAAACT+TGG	+	chr6_3:15822195-15822214	Msa0941810:intron	30.0%
ATTCCATTAGTGAAGGAATA+AGG	+	chr6_3:15822758-15822777	Msa0941810:intron	30.0%
TATCCTTATTCCTTCACTAA+TGG	-	chr6_3:15822764-15822783	None:intergenic	30.0%

Showing 1 to 10 of 226 entries

Previous1 2 3 4 5…23Next

Chromosome	Type	Strat	End	Strand	Name
chr6_3	gene	15821607	15823653	15821607	ID=Msa0941810;Name=Msa0941810
chr6_3	mRNA	15821607	15823653	15821607	ID=Msa0941810-mRNA-1;Parent=Msa0941810;Name=Msa0941810-mRNA-1;_AED=0.26;_eAED=0.36;_QI=0\|0\|0\|0.75\|1\|1\|4\|0\|271
chr6_3	exon	15821607	15821747	15821607	ID=Msa0941810-mRNA-1:exon:4869;Parent=Msa0941810-mRNA-1
chr6_3	exon	15822623	15822684	15822623	ID=Msa0941810-mRNA-1:exon:4870;Parent=Msa0941810-mRNA-1
chr6_3	exon	15822959	15823285	15822959	ID=Msa0941810-mRNA-1:exon:4871;Parent=Msa0941810-mRNA-1
chr6_3	exon	15823368	15823653	15823368	ID=Msa0941810-mRNA-1:exon:4872;Parent=Msa0941810-mRNA-1
chr6_3	CDS	15821607	15821747	15821607	ID=Msa0941810-mRNA-1:cds;Parent=Msa0941810-mRNA-1
chr6_3	CDS	15822623	15822684	15822623	ID=Msa0941810-mRNA-1:cds;Parent=Msa0941810-mRNA-1
chr6_3	CDS	15822959	15823285	15822959	ID=Msa0941810-mRNA-1:cds;Parent=Msa0941810-mRNA-1
chr6_3	CDS	15823368	15823653	15823368	ID=Msa0941810-mRNA-1:cds;Parent=Msa0941810-mRNA-1

Gene Sequence

>Msa0941810

ATGCTCGCCAATGCTCATCGTTTGTTTGGTATTTCCAACATGGTGAAGATGATAAAGTCGATTGATGATGATGGTCATAAAGATGACGCAATGAAGTTGATTATTTTTGAGTCGGATATGTGTGCAAGATTTCCAAGTCAAGTTGCCACCGGAGATGGAATTGCAATGGCACACCGAGCTCAAGCTGTGATTTCCAACATGGACTGTAAGGGGATGATGGTGGCATCCTTGGAAAGGTTTTTGCCTTTGCATGATACAAGGGGAGAGCTTGCTCCTAGGGATGTAGTCGCAAGAAGTATAAACGACCAACTTAAAAAGCGCAACGAAAAGTACATGCTCCTTGACATTAGCCACAAACCAAAGAATGAAATCCTGTCGCACTTTCCCAACATTGCTTCGACGTGTCTTCAATATGGTTTGGACATAACACGTCATCCAATCCCCGTTGTTCCAAGCTGCTCATTACATGTGTGGAGGAGTTCATGCCGGGCTCCAAGGAGAGACAAATCTGAAAGGCCTGTATGTAGCGGAGCTGTTCAGTCGTCAGTTGATCAAATGAAGAGCTCTAGCCTCGACCAGAATGCATCAAATTTATGGCCAAGACCTACGGTGCCGTTTTCACTTGGAAGTAATGCCATCGACAAAATATTATCTGCGACTGCAGAATTGAGGAAAGAACTGCAATCTATCATGTTTTACTATGTTGGAATAGTGAGGTCAACAATGTGGTTAGAAACAGCTGATAGAAAGCACTTATTTTCACTTTACGCAAACAATCACAGTAACAAAACACACTCTCAAAAGTTTTTTTTATAG

Protein sequence

>Msa0941810

MLANAHRLFGISNMVKMIKSIDDDGHKDDAMKLIIFESDMCARFPSQVATGDGIAMAHRAQAVISNMDCKGMMVASLERFLPLHDTRGELAPRDVVARSINDQLKKRNEKYMLLDISHKPKNEILSHFPNIASTCLQYGLDITRHPIPVVPSCSLHVWRSSCRAPRRDKSERPVCSGAVQSSVDQMKSSSLDQNASNLWPRPTVPFSLGSNAIDKILSATAELRKELQSIMFYYVGIVRSTMWLETADRKHLFSLYANNHSNKTHSQKFFL*