AlfalfaGEDB | Msa0943900

M. sativa cultivar zhongmu-4 / Msa0943900

KEGG: K09422
GO: GO:0000003 GO:0000976 GO:0000977 GO:0000978 GO:0000981 GO:0000987 GO:0000988 GO:0000989 GO:0001012 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0001935 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0006970 GO:0007275 GO:0008150 GO:0008283 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009741 GO:0009751 GO:0009753 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035670 GO:0040008 GO:0042221 GO:0042493 GO:0042742 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0046686 GO:0046983 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048532 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048585 GO:0048586 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050673 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051093 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051302 GO:0051704 GO:0051707 GO:0051716 GO:0051782 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071396 GO:0071407 GO:0071495 GO:0080050 GO:0080060 GO:0080090 GO:0080113 GO:0090567 GO:0097159 GO:0097305 GO:0098542 GO:0099402 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:1904961 GO:1990837 GO:2000022 GO:2000026 GO:2000028 GO:2000031 GO:2000112 GO:2000241 GO:2000242 GO:2001023 GO:2001038 GO:2001141
PFAM: PF13921.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0943900	sp\|Q5NBM8\|CSA_ORYSJ	69.048	84	23	1	95	175	45	128	2.83e-33	126

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0943900	A0A072UI90	94.186	86	5	0	171	256	262	347	2.15e-44	162
Msa0943900	A0A072UI90	97.059	170	5	0	1	170	1	170	4.51e-114	340

Showing 1 to 2 of 2 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0943900	TF	MYB-related

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0943900	MtrunA17_Chr6g0460671	97.059	170	5	0	1	170	1	170	8.68e-118	340
Msa0943900	MtrunA17_Chr6g0460671	94.186	86	5	0	171	256	262	347	4.14e-48	162
Msa0943900	MtrunA17_Chr5g0417621	56.364	110	45	1	61	170	99	205	3.01e-35	130
Msa0943900	MtrunA17_Chr4g0042501	69.620	79	24	0	92	170	98	176	9.35e-35	129
Msa0943900	MtrunA17_Chr7g0254261	56.667	120	46	1	57	170	41	160	1.47e-34	127
Msa0943900	MtrunA17_Chr6g0480581	72.222	72	20	0	99	170	4	75	1.68e-33	121
Msa0943900	MtrunA17_Chr6g0460661	55.140	107	28	2	64	170	1	87	2.97e-31	113
Msa0943900	MtrunA17_Chr3g0125801	67.949	78	25	0	93	170	10	87	2.80e-30	114
Msa0943900	MtrunA17_Chr4g0008551	56.164	73	32	0	98	170	37	109	1.11e-24	100
Msa0943900	MtrunA17_Chr4g0053431	56.164	73	32	0	98	170	4	76	5.83e-24	97.4

Showing 1 to 10 of 76 entries

Previous1 2 3 4 5…8Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0943900	AT1G17950.1	72.222	72	20	0	99	170	5	76	5.14e-34	123
Msa0943900	AT1G69560.1	73.611	72	19	0	99	170	107	178	2.22e-33	124
Msa0943900	AT1G69560.2	73.611	72	19	0	99	170	123	194	2.54e-33	124
Msa0943900	AT1G26780.1	73.611	72	19	0	99	170	98	169	7.03e-33	121
Msa0943900	AT5G17800.1	69.231	78	24	0	93	170	87	164	2.07e-32	121
Msa0943900	AT1G26780.2	73.611	72	19	0	99	170	98	169	2.20e-32	122
Msa0943900	AT3G29020.1	63.636	77	28	0	94	170	60	136	8.19e-30	112
Msa0943900	AT1G73410.1	73.611	72	19	0	99	170	6	77	8.46e-30	112
Msa0943900	AT1G73410.2	73.611	72	19	0	99	170	6	77	9.78e-30	111
Msa0943900	AT4G33450.1	61.728	81	30	1	91	170	10	90	1.56e-29	112

Showing 1 to 10 of 104 entries

Previous1 2 3 4 5…11Next

Find 56 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCTGCTCTATTGATTCT+AGG	0.313747	6_3:-20020834	None:intergenic
AAATGTGAGAGATAAGATTA+AGG	0.412885	6_3:+20021802	Msa0943900:CDS
AACACCAAGCTTTCCATTAG+AGG	0.318928	6_3:+20020203	Msa0943900:CDS
AACATTGCTGAACAAATACA+TGG	0.572771	6_3:+20020296	Msa0943900:CDS
AACTTGAACAATGATGGTTA+TGG	0.426752	6_3:+20019939	Msa0943900:CDS
AAGAAGGAAGTGGAGATGGA+AGG	0.512851	6_3:-20019989	None:intergenic
AAGGAAGAAAATGAGAAATT+TGG	0.160898	6_3:+20020179	Msa0943900:CDS
AAGGGAAAAGTTGCAGATTA+AGG	0.276686	6_3:+20020793	Msa0943900:intron
AAGGTAGAAGTAGGGGACTA+TGG	0.428911	6_3:+20021617	Msa0943900:CDS
AGAAAGAAAGGTAGAAGTAG+GGG	0.536632	6_3:+20021610	Msa0943900:CDS

Showing 1 to 10 of 56 entries

Previous1 2 3 4 5 6Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TCACTAAACTTGAACAATGA+TGG	+	chr6_3:20019933-20019952	Msa0943900:CDS	30.0%
AACTTGAACAATGATGGTTA+TGG	+	chr6_3:20019939-20019958	Msa0943900:CDS	30.0%
GAAAGTTCAAAATACCCTTT+GGG	+	chr6_3:20020057-20020076	Msa0943900:CDS	30.0%
AACATTGCTGAACAAATACA+TGG	+	chr6_3:20020296-20020315	Msa0943900:CDS	30.0%
TGAACAAATACATGGAAGAT+CGG	+	chr6_3:20020304-20020323	Msa0943900:CDS	30.0%
ATACACTTCATGGTAACAAA+TGG	+	chr6_3:20020892-20020911	Msa0943900:intron	30.0%
TAGCTTTCTCTTTCTTGAAA+TGG	-	chr6_3:20021015-20021034	None:intergenic	30.0%
TAGCTACATTATTCTTTCCT+GGG	-	chr6_3:20021049-20021068	None:intergenic	30.0%
GTTGAGTTAGATTCATCAAA+CGG	-	chr6_3:20021092-20021111	None:intergenic	30.0%
CATACTCATTTGTGAATCAT+AGG	-	chr6_3:20021162-20021181	None:intergenic	30.0%

Showing 1 to 10 of 230 entries

Previous1 2 3 4 5…23Next

Chromosome	Type	Strat	End	Strand	Name
chr6_3	gene	20019927	20021862	20019927	ID=Msa0943900;Name=Msa0943900
chr6_3	mRNA	20019927	20021862	20019927	ID=Msa0943900-mRNA-1;Parent=Msa0943900;Name=Msa0943900-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0\|0\|0\|1\|1\|1\|3\|0\|256
chr6_3	exon	20019927	20020326	20019927	ID=Msa0943900-mRNA-1:exon:6000;Parent=Msa0943900-mRNA-1
chr6_3	exon	20020796	20020903	20020796	ID=Msa0943900-mRNA-1:exon:6001;Parent=Msa0943900-mRNA-1
chr6_3	exon	20021600	20021862	20021600	ID=Msa0943900-mRNA-1:exon:6002;Parent=Msa0943900-mRNA-1
chr6_3	CDS	20019927	20020326	20019927	ID=Msa0943900-mRNA-1:cds;Parent=Msa0943900-mRNA-1
chr6_3	CDS	20020796	20020903	20020796	ID=Msa0943900-mRNA-1:cds;Parent=Msa0943900-mRNA-1
chr6_3	CDS	20021600	20021862	20021600	ID=Msa0943900-mRNA-1:cds;Parent=Msa0943900-mRNA-1

Gene Sequence

>Msa0943900

ATGAGTTCACTAAACTTGAACAATGATGGTTATGGTTTCTCTTTGGACTTGAATATTTCTTCCCTTCCATCTCCACTTCCTTCTTCATCTTCTACTCCTCTTTTGGGTCATATTGGTAACAATGAGTCTGGAAAGTTCAAAATACCCTTTGGGATTTCTAACCCTTCAGTGATCCATCCTAATGAGAGCATGGTCAAAAATAATAAAGGGAATTTTGGGGATGAGAGAAAGAACTTGTCAATGAAAGTTGACAAGGAAGAAAATGAGAAATTTGGGAACACCAAGCTTTCCATTAGAGGTCATTGGAGACCATCTGAAGATGCTAAGCTTAAAAAACTTGTTGATGAATTTGGTCCTCACAATTGGAACAACATTGCTGAACAAATACATGGAAGATCGGGGAAAAGTTGCAGATTAAGGTGGTGTAATCAGCTAGATCCTAGAATCAATAGAGCAGCTTTTAGTGAGGAAGAAGAGGAGAAGCTTTTGCATGCTCATACACTTCATGGCTTACTTATAGAAAGAAAGGTAGAAGTAGGGGACTATGGTTTTGCCAGAATTTGCAGTGCAATGAGAGGTTGTTCTCAAGGTCACATGGGAAAGCTTAAGAGTGTGGACCAATCCAATCATTCATATTCAAACTCAGAAGTTTCAGTATCTGAGTCAGTTGCAACAAACATGAACAATGAATCAATTTTGGGAGAAAGTGAAAATGTGAGAGATAAGATTAAGGTGTCATTTATTGACTTTCTTGGAGTAGGTGATACATAG

Protein sequence

>Msa0943900

MSSLNLNNDGYGFSLDLNISSLPSPLPSSSSTPLLGHIGNNESGKFKIPFGISNPSVIHPNESMVKNNKGNFGDERKNLSMKVDKEENEKFGNTKLSIRGHWRPSEDAKLKKLVDEFGPHNWNNIAEQIHGRSGKSCRLRWCNQLDPRINRAAFSEEEEEKLLHAHTLHGLLIERKVEVGDYGFARICSAMRGCSQGHMGKLKSVDQSNHSYSNSEVSVSESVATNMNNESILGESENVRDKIKVSFIDFLGVGDT*