Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0943910 | sp|Q8GY25|WOX12_ARATH | 50.355 | 282 | 100 | 6 | 26 | 296 | 15 | 267 | 9.77e-71 | 223 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0943910 | A0A072U832 | 94.946 | 277 | 13 | 1 | 24 | 299 | 24 | 300 | 5.24e-141 | 409 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0943910 | TF | HB-WOX |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0943910 | MtrunA17_Chr6g0460691 | 94.946 | 277 | 13 | 1 | 24 | 299 | 24 | 300 | 1.01e-144 | 409 |
| Msa0943910 | MtrunA17_Chr7g0254251 | 46.815 | 314 | 110 | 9 | 1 | 299 | 1 | 272 | 7.58e-73 | 225 |
| Msa0943910 | MtrunA17_Chr7g0223471 | 62.857 | 70 | 26 | 0 | 24 | 93 | 39 | 108 | 6.30e-28 | 111 |
| Msa0943910 | MtrunA17_Chr2g0283141 | 62.500 | 72 | 27 | 0 | 24 | 95 | 47 | 118 | 1.85e-27 | 110 |
| Msa0943910 | MtrunA17_Chr8g0392991 | 43.333 | 90 | 50 | 1 | 11 | 99 | 75 | 164 | 4.68e-17 | 80.5 |
| Msa0943910 | MtrunA17_Chr4g0043891 | 35.000 | 80 | 52 | 0 | 31 | 110 | 7 | 86 | 1.53e-14 | 72.0 |
| Msa0943910 | MtrunA17_Chr1g0212511 | 46.875 | 64 | 34 | 0 | 28 | 91 | 81 | 144 | 4.34e-14 | 70.9 |
| Msa0943910 | MtrunA17_Chr3g0144021 | 47.692 | 65 | 34 | 0 | 28 | 92 | 78 | 142 | 1.63e-13 | 68.6 |
| Msa0943910 | MtrunA17_Chr5g0436661 | 37.500 | 64 | 40 | 0 | 32 | 95 | 33 | 96 | 3.43e-12 | 63.9 |
| Msa0943910 | MtrunA17_Chr5g0405351 | 40.625 | 64 | 37 | 1 | 31 | 93 | 29 | 92 | 3.60e-12 | 65.9 |
| Msa0943910 | MtrunA17_Chr4g0031341 | 40.299 | 67 | 40 | 0 | 32 | 98 | 25 | 91 | 3.96e-12 | 65.1 |
| Msa0943910 | MtrunA17_Chr7g0238431 | 40.625 | 64 | 38 | 0 | 31 | 94 | 7 | 70 | 8.72e-12 | 63.2 |
| Msa0943910 | MtrunA17_Chr7g0222981 | 41.538 | 65 | 38 | 0 | 29 | 93 | 65 | 129 | 8.51e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0943910 | AT5G17810.1 | 50.355 | 282 | 100 | 6 | 26 | 296 | 15 | 267 | 9.93e-72 | 223 |
| Msa0943910 | AT5G17810.2 | 50.355 | 282 | 100 | 6 | 26 | 296 | 15 | 267 | 9.93e-72 | 223 |
| Msa0943910 | AT3G03660.1 | 51.515 | 297 | 112 | 7 | 3 | 297 | 2 | 268 | 1.07e-71 | 222 |
| Msa0943910 | AT5G17810.3 | 50.355 | 282 | 99 | 6 | 26 | 296 | 15 | 266 | 1.59e-71 | 222 |
| Msa0943910 | AT3G03660.4 | 51.877 | 293 | 109 | 7 | 3 | 293 | 2 | 264 | 1.06e-69 | 218 |
| Msa0943910 | AT3G03660.2 | 48.125 | 320 | 117 | 8 | 3 | 297 | 2 | 297 | 7.44e-69 | 216 |
| Msa0943910 | AT3G03660.3 | 48.418 | 316 | 114 | 8 | 3 | 293 | 2 | 293 | 5.49e-67 | 212 |
| Msa0943910 | AT2G33880.1 | 62.162 | 74 | 28 | 0 | 23 | 96 | 46 | 119 | 1.52e-27 | 110 |
| Msa0943910 | AT2G33880.2 | 62.162 | 74 | 28 | 0 | 23 | 96 | 46 | 119 | 1.72e-27 | 110 |
| Msa0943910 | AT5G45980.1 | 57.534 | 73 | 31 | 0 | 30 | 102 | 53 | 125 | 8.64e-26 | 104 |
| Msa0943910 | AT4G35550.1 | 47.692 | 65 | 34 | 0 | 28 | 92 | 95 | 159 | 2.47e-14 | 72.0 |
| Msa0943910 | AT3G18010.1 | 40.000 | 80 | 47 | 1 | 29 | 107 | 73 | 152 | 6.94e-14 | 71.6 |
| Msa0943910 | AT5G59340.1 | 39.706 | 68 | 41 | 0 | 31 | 98 | 13 | 80 | 7.65e-13 | 67.8 |
| Msa0943910 | AT1G20700.2 | 42.254 | 71 | 41 | 0 | 28 | 98 | 29 | 99 | 1.11e-12 | 65.1 |
| Msa0943910 | AT1G20700.1 | 42.254 | 71 | 41 | 0 | 28 | 98 | 91 | 161 | 2.55e-12 | 65.5 |
| Msa0943910 | AT1G20700.3 | 42.254 | 71 | 41 | 0 | 28 | 98 | 91 | 161 | 2.80e-12 | 65.1 |
| Msa0943910 | AT2G17950.1 | 42.188 | 64 | 36 | 1 | 31 | 93 | 37 | 100 | 3.56e-12 | 66.2 |
| Msa0943910 | AT2G28610.1 | 38.889 | 72 | 44 | 0 | 26 | 97 | 2 | 73 | 6.01e-12 | 64.7 |
| Msa0943910 | AT3G11260.1 | 34.884 | 86 | 47 | 1 | 32 | 117 | 24 | 100 | 7.84e-12 | 63.5 |
| Msa0943910 | AT1G46480.2 | 42.188 | 64 | 37 | 0 | 31 | 94 | 89 | 152 | 3.08e-11 | 62.0 |
| Msa0943910 | AT5G05770.1 | 37.500 | 64 | 40 | 0 | 32 | 95 | 29 | 92 | 6.70e-11 | 59.3 |
Find 61 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAAACTTCTTGAGAAATT+TGG | 0.100600 | 6_3:-20114217 | Msa0943910:CDS |
| ATTCTCACGGTTTCATCTTT+TGG | 0.207436 | 6_3:+20114241 | None:intergenic |
| GACCATTCCACTATTGAAAA+TGG | 0.216187 | 6_3:+20114270 | None:intergenic |
| ATAAGGATTTGTTCAGGTTT+TGG | 0.291953 | 6_3:+20114301 | None:intergenic |
| TGAAAATGGATTCAAGTATA+AGG | 0.302638 | 6_3:+20114284 | None:intergenic |
| CTTGGTGCTGCACTTGGTCT+TGG | 0.327659 | 6_3:-20114034 | Msa0943910:CDS |
| GTTGGTGCTGGTGCTGGTCT+TGG | 0.335150 | 6_3:-20113911 | Msa0943910:CDS |
| CTGCACTGGTATTGGTGATA+TGG | 0.337777 | 6_3:+20114079 | None:intergenic |
| GCTGGTGCTGGTCTTGGTCT+TGG | 0.339855 | 6_3:-20113905 | Msa0943910:CDS |
| TCATCATGTGTTGGTGGTGC+TGG | 0.341185 | 6_3:-20113941 | Msa0943910:CDS |
| CTGTCTCTTGGTGCTGCACT+TGG | 0.345570 | 6_3:-20114040 | Msa0943910:CDS |
| CTTGGTCTTGGTGCTGCTGC+TGG | 0.354290 | 6_3:-20113893 | Msa0943910:CDS |
| GTAATATTGGTTCATTCCTC+TGG | 0.359362 | 6_3:-20112150 | Msa0943910:CDS |
| AAATGAACATGCAGCACAAC+TGG | 0.366923 | 6_3:-20111749 | Msa0943910:three_prime_UTR |
| TCAGTTCCAACCAATGAGTT+TGG | 0.369989 | 6_3:-20112123 | Msa0943910:CDS |
| GTTTGGTGAAGATGTAATAT+TGG | 0.373946 | 6_3:-20112163 | Msa0943910:CDS |
| TCAAATCAATTTGCCTCAAA+TGG | 0.378394 | 6_3:-20113831 | Msa0943910:CDS |
| GTTGGTGTTGGTGCTGGTGC+TGG | 0.382679 | 6_3:-20113917 | Msa0943910:CDS |
| TGTTGGTGCTGCACTGGTAT+TGG | 0.396373 | 6_3:+20114071 | None:intergenic |
| TCAAGTATAAGGATTTGTTC+AGG | 0.405750 | 6_3:+20114295 | None:intergenic |
| CAGTACTGCCACCGCTTAGT+TGG | 0.406811 | 6_3:+20114107 | None:intergenic |
| GTACCTCTTGGCATTTCTGT+TGG | 0.409908 | 6_3:+20112207 | None:intergenic |
| GGGTTTGGTGGTTTGTACTT+AGG | 0.411382 | 6_3:-20113860 | Msa0943910:CDS |
| AGTACTGCCACCGCTTAGTT+GGG | 0.417375 | 6_3:+20114108 | None:intergenic |
| GCATGGTGAAAGCTACTATC+TGG | 0.420994 | 6_3:-20112079 | Msa0943910:intron |
| GCTGGAGTTGGTGTTGGTGC+TGG | 0.426540 | 6_3:-20113923 | Msa0943910:CDS |
| GCTGGTGGAGAACAAGGGTT+TGG | 0.431515 | 6_3:-20113875 | Msa0943910:CDS |
| GCTGAAGTGTTGTCCATTTG+AGG | 0.434913 | 6_3:+20113818 | None:intergenic |
| CTTGAGAAATTTGGAGCTGT+TGG | 0.435040 | 6_3:-20114208 | Msa0943910:CDS |
| GGTGCTGCACTTGGTCTTGG+TGG | 0.436302 | 6_3:-20114031 | Msa0943910:CDS |
| ATTGACATGAAAACAATGTT+TGG | 0.438397 | 6_3:-20112180 | Msa0943910:CDS |
| GTTGTTTGGATTATTAGTAT+TGG | 0.439777 | 6_3:+20114360 | None:intergenic |
| TGTGTTGGTGGTGCTGGAGT+TGG | 0.467896 | 6_3:-20113935 | Msa0943910:CDS |
| GCTGCTGCTGGTGGAGAACA+AGG | 0.478164 | 6_3:-20113881 | Msa0943910:CDS |
| GGTGGAGAACAAGGGTTTGG+TGG | 0.479255 | 6_3:-20113872 | Msa0943910:CDS |
| TCAAATTTCAACTATTACCC+AGG | 0.481334 | 6_3:-20113761 | Msa0943910:intron |
| GGTGGTGCTGGAGTTGGTGT+TGG | 0.481353 | 6_3:-20113929 | Msa0943910:CDS |
| GGTTCGTCTTCATCATGTGT+TGG | 0.487527 | 6_3:-20113950 | Msa0943910:CDS |
| AACAGTACCTCTCTGTCTCT+TGG | 0.490108 | 6_3:-20114052 | Msa0943910:CDS |
| CATCAAGAAACCAAACTCAT+TGG | 0.493495 | 6_3:+20112113 | None:intergenic |
| AAGAAACCAAACTCATTGGT+TGG | 0.499044 | 6_3:+20112117 | None:intergenic |
| GTGATCACAGTGTTTATCAA+TGG | 0.505244 | 6_3:-20112234 | Msa0943910:CDS |
| ATGTCAATTGCAGTACCTCT+TGG | 0.508431 | 6_3:+20112195 | None:intergenic |
| AGGTACTGTTGGTGCTGCAC+TGG | 0.511056 | 6_3:+20114065 | None:intergenic |
| CGGCCTGCATCTGCCTCTGA+CGG | 0.528621 | 6_3:+20114134 | None:intergenic |
| GGTCTTGGTGCTGCTGCTGG+TGG | 0.543398 | 6_3:-20113890 | Msa0943910:CDS |
| ACGCCGTCAGAGGCAGATGC+AGG | 0.544113 | 6_3:-20114137 | Msa0943910:CDS |
| AAATTTGAAGCATGATCAGA+AGG | 0.576369 | 6_3:+20113776 | None:intergenic |
| GTGAAACTGTGAGATCAAGA+TGG | 0.590101 | 6_3:-20114327 | Msa0943910:CDS |
| ACTGCCACCGCTTAGTTGGG+CGG | 0.608647 | 6_3:+20114111 | None:intergenic |
| AGAATTCATAGTGAAAGTTG+AGG | 0.624134 | 6_3:+20114006 | None:intergenic |
| TCGTCTTCATCATGTGTTGG+TGG | 0.630063 | 6_3:-20113947 | Msa0943910:CDS |
| GCCACCGCTTAGTTGGGCGG+CGG | 0.641411 | 6_3:+20114114 | None:intergenic |
| TGCAGCACCAAGAGACAGAG+AGG | 0.645908 | 6_3:+20114045 | None:intergenic |
| AACTTTGAGACTGAACATGT+TGG | 0.650519 | 6_3:+20114383 | None:intergenic |
| AAGAGACAGAGAGGTACTGT+TGG | 0.665242 | 6_3:+20114054 | None:intergenic |
| CTGCTGCTGGTGGAGAACAA+GGG | 0.666668 | 6_3:-20113880 | Msa0943910:CDS |
| TTGATGCAGAACTTGCAGCA+TGG | 0.678300 | 6_3:-20112096 | Msa0943910:CDS |
| GACGGCGTCTAGAGCGAGAG+CGG | 0.680232 | 6_3:+20114152 | None:intergenic |
| GGTTGGAACTGAGACTCCAG+AGG | 0.711041 | 6_3:+20112134 | None:intergenic |
| GTTCCAACAGAAATGCCAAG+AGG | 0.748646 | 6_3:-20112210 | Msa0943910:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTATTTATATTAATTTT+AGG | - | chr6_3:20113861-20113880 | Msa0943910:CDS | 0.0% |
| !!! | ATTTATTTATATTAATTTTA+GGG | - | chr6_3:20113862-20113881 | Msa0943910:CDS | 0.0% |
| !!! | TACTTATAATAATAACTTTT+CGG | - | chr6_3:20112180-20112199 | Msa0943910:CDS | 10.0% |
| !! | GTTCATAAAAAAAAAATTAT+AGG | + | chr6_3:20112452-20112471 | None:intergenic | 10.0% |
| !!! | ATATCATATTTTTTTGAAAA+GGG | + | chr6_3:20112654-20112673 | None:intergenic | 10.0% |
| !!! | AATATCATATTTTTTTGAAA+AGG | + | chr6_3:20112655-20112674 | None:intergenic | 10.0% |
| !!! | GTTTAGAAATTTTTAAATTA+AGG | + | chr6_3:20113145-20113164 | None:intergenic | 10.0% |
| !!! | TTATTTATATTAATTTTAGG+GGG | - | chr6_3:20113864-20113883 | Msa0943910:CDS | 10.0% |
| !!! | TTATTTCAAAAACTTTATTT+AGG | + | chr6_3:20114334-20114353 | None:intergenic | 10.0% |
| !!! | ACTTATAATAATAACTTTTC+GGG | - | chr6_3:20112181-20112200 | Msa0943910:CDS | 15.0% |
| !! | AGAACTTTCAAAAAAAAAAA+TGG | + | chr6_3:20112601-20112620 | None:intergenic | 15.0% |
| !!! | TATCATATTTTTTTGAAAAG+GGG | + | chr6_3:20112653-20112672 | None:intergenic | 15.0% |
| !!! | AAATAAAACTATCCTTTTTT+TGG | - | chr6_3:20112917-20112936 | Msa0943910:intron | 15.0% |
| !!! | TTAAATTAAGGAATTAGTTT+TGG | + | chr6_3:20113133-20113152 | None:intergenic | 15.0% |
| !!! | TTCATTAATTTGGTATAATA+TGG | + | chr6_3:20113299-20113318 | None:intergenic | 15.0% |
| !! | GAAAAATAAGTTAAAAAAGA+AGG | + | chr6_3:20113335-20113354 | None:intergenic | 15.0% |
| !!! | AGTTTTTGAAATAAATGTTT+TGG | - | chr6_3:20114340-20114359 | Msa0943910:CDS | 15.0% |
| !! | GTTAAGATGATTACAAAATT+TGG | + | chr6_3:20112625-20112644 | None:intergenic | 20.0% |
| !!! | ATCATATTTTTTTGAAAAGG+GGG | + | chr6_3:20112652-20112671 | None:intergenic | 20.0% |
| !!! | CTAATTTTTGTCCTTAAAAA+GGG | + | chr6_3:20112702-20112721 | None:intergenic | 20.0% |
| !!! | ACTAATTTTTGTCCTTAAAA+AGG | + | chr6_3:20112703-20112722 | None:intergenic | 20.0% |
| !! | ACTGATTATAAACCAAAAAA+AGG | + | chr6_3:20112932-20112951 | None:intergenic | 20.0% |
| !! | GATTGAAGAATTAATAAAAG+TGG | - | chr6_3:20112961-20112980 | Msa0943910:intron | 20.0% |
| !! | GAAAAGAGAAAAATAATCTA+GGG | + | chr6_3:20113167-20113186 | None:intergenic | 20.0% |
| !! | TGAAAAGAGAAAAATAATCT+AGG | + | chr6_3:20113168-20113187 | None:intergenic | 20.0% |
| !! | AGCAATTTCTTTCATTAATT+TGG | + | chr6_3:20113309-20113328 | None:intergenic | 20.0% |
| !! | TTTCTCACAATATTAATTGT+AGG | + | chr6_3:20113689-20113708 | None:intergenic | 20.0% |
| !!! | TATGTCATATGTAATAGTTT+TGG | - | chr6_3:20113809-20113828 | Msa0943910:CDS | 20.0% |
| ! | GTTGTTTGGATTATTAGTAT+TGG | + | chr6_3:20111795-20111814 | None:intergenic | 25.0% |
| !! | TGAAAATGGATTCAAGTATA+AGG | + | chr6_3:20111871-20111890 | None:intergenic | 25.0% |
| !! | AAGAAGTTTTCTTATTCTCA+CGG | + | chr6_3:20111927-20111946 | None:intergenic | 25.0% |
| ! | AGAAAACTTCTTGAGAAATT+TGG | - | chr6_3:20111935-20111954 | Msa0943910:intron | 25.0% |
| ! | CTGAAACCAATAAAAAACAT+TGG | + | chr6_3:20111975-20111994 | None:intergenic | 25.0% |
| ! | AATAAATTAAGCACATACCT+GGG | + | chr6_3:20112411-20112430 | None:intergenic | 25.0% |
| ! | TATGTGCTTAATTTATTGCA+TGG | - | chr6_3:20112414-20112433 | Msa0943910:intron | 25.0% |
| ! | ATGTGCTTAATTTATTGCAT+GGG | - | chr6_3:20112415-20112434 | Msa0943910:intron | 25.0% |
| !! | TTAAGACAAAACCCTTTTTA+AGG | - | chr6_3:20112688-20112707 | Msa0943910:intron | 25.0% |
| !!! | TGGTTTATAATCAGTTTTGA+TGG | - | chr6_3:20112937-20112956 | Msa0943910:intron | 25.0% |
| ! | AGAAAGGAATGTGATAAAAA+GGG | + | chr6_3:20113101-20113120 | None:intergenic | 25.0% |
| !! | TTTTTATCACATTCCTTTCT+GGG | - | chr6_3:20113101-20113120 | Msa0943910:intron | 25.0% |
| !!! | ATTTTGTTATACTCTTCTCT+AGG | - | chr6_3:20113196-20113215 | Msa0943910:intron | 25.0% |
| !!! | TTTTTTCTGGAATGAATGAA+GGG | + | chr6_3:20113417-20113436 | None:intergenic | 25.0% |
| !! | AGTTTTCAACAAAATTGTCA+TGG | - | chr6_3:20113626-20113645 | Msa0943910:intron | 25.0% |
| ! | TAATTGTAGGTTTCAATTGT+CGG | + | chr6_3:20113676-20113695 | None:intergenic | 25.0% |
| !!! | ATATTAATTTTAGGGGGAAT+AGG | - | chr6_3:20113870-20113889 | Msa0943910:CDS | 25.0% |
| ! | ATTGACATGAAAACAATGTT+TGG | - | chr6_3:20113972-20113991 | Msa0943910:CDS | 25.0% |
| ! | ACCTCTCAAAAATAGTTTAA+AGG | - | chr6_3:20114213-20114232 | Msa0943910:CDS | 25.0% |
| !!! | ACCTTTAAACTATTTTTGAG+AGG | + | chr6_3:20114217-20114236 | None:intergenic | 25.0% |
| !! | ATAAGGATTTGTTCAGGTTT+TGG | + | chr6_3:20111854-20111873 | None:intergenic | 30.0% |
| ! | TCAAGTATAAGGATTTGTTC+AGG | + | chr6_3:20111860-20111879 | None:intergenic | 30.0% |
| ! | CTTGAATCCATTTTCAATAG+TGG | - | chr6_3:20111875-20111894 | Msa0943910:intron | 30.0% |
| !! | ATCCATTTTCAATAGTGGAA+TGG | - | chr6_3:20111880-20111899 | Msa0943910:intron | 30.0% |
| !!! | GTGATGCCAATGTTTTTTAT+TGG | - | chr6_3:20111966-20111985 | Msa0943910:intron | 30.0% |
| AGAATTCATAGTGAAAGTTG+AGG | + | chr6_3:20112149-20112168 | None:intergenic | 30.0% | |
| TCAAATCAATTTGCCTCAAA+TGG | - | chr6_3:20112321-20112340 | Msa0943910:intron | 30.0% | |
| ! | AAATTTGAAGCATGATCAGA+AGG | + | chr6_3:20112379-20112398 | None:intergenic | 30.0% |
| TCAAATTTCAACTATTACCC+AGG | - | chr6_3:20112391-20112410 | Msa0943910:intron | 30.0% | |
| CAATAAATTAAGCACATACC+TGG | + | chr6_3:20112412-20112431 | None:intergenic | 30.0% | |
| !! | ATTTTGATCCCAACTTAAAC+AGG | - | chr6_3:20112543-20112562 | Msa0943910:intron | 30.0% |
| ! | GTAAGAAACCTGTTTAAGTT+GGG | + | chr6_3:20112554-20112573 | None:intergenic | 30.0% |
| TGTAAGAAACCTGTTTAAGT+TGG | + | chr6_3:20112555-20112574 | None:intergenic | 30.0% | |
| ! | TATGCTTTTCATTTAATCCC+AGG | + | chr6_3:20113012-20113031 | None:intergenic | 30.0% |
| ! | GTTGTACTAATCTTCTTTTC+CGG | - | chr6_3:20113035-20113054 | Msa0943910:intron | 30.0% |
| ! | AAAGTGAACTCATGTTTTTC+CGG | + | chr6_3:20113057-20113076 | None:intergenic | 30.0% |
| CAGAAAGGAATGTGATAAAA+AGG | + | chr6_3:20113102-20113121 | None:intergenic | 30.0% | |
| ! | CTTTTTATCACATTCCTTTC+TGG | - | chr6_3:20113100-20113119 | Msa0943910:intron | 30.0% |
| !!! | TTTTTCTGGAATGAATGAAG+GGG | + | chr6_3:20113416-20113435 | None:intergenic | 30.0% |
| !!! | CTTTTTTCTGGAATGAATGA+AGG | + | chr6_3:20113418-20113437 | None:intergenic | 30.0% |
| CTTCATTCATTCCAGAAAAA+AGG | - | chr6_3:20113416-20113435 | Msa0943910:intron | 30.0% | |
| ! | AATCGATGATAATGCAAATG+TGG | - | chr6_3:20113512-20113531 | Msa0943910:intron | 30.0% |
| ! | GTTTGGTGAAGATGTAATAT+TGG | - | chr6_3:20113989-20114008 | Msa0943910:CDS | 30.0% |
| GACGACACTTATAAATGAAA+CGG | + | chr6_3:20114127-20114146 | None:intergenic | 30.0% | |
| !! | AACTTTGAGACTGAACATGT+TGG | + | chr6_3:20111772-20111791 | None:intergenic | 35.0% |
| !! | TCACTCTTTTCAGTGTTGTT+TGG | + | chr6_3:20111809-20111828 | None:intergenic | 35.0% |
| GACCATTCCACTATTGAAAA+TGG | + | chr6_3:20111885-20111904 | None:intergenic | 35.0% | |
| ! | ATTCTCACGGTTTCATCTTT+TGG | + | chr6_3:20111914-20111933 | None:intergenic | 35.0% |
| GAATCTACAACACTTGTCAA+AGG | + | chr6_3:20112869-20112888 | None:intergenic | 35.0% | |
| GGAACTGTCAAATCAACAAA+AGG | + | chr6_3:20112991-20113010 | None:intergenic | 35.0% | |
| !! | TTTGTTGATTTGACAGTTCC+TGG | - | chr6_3:20112991-20113010 | Msa0943910:intron | 35.0% |
| !! | TTGTTGATTTGACAGTTCCT+GGG | - | chr6_3:20112992-20113011 | Msa0943910:intron | 35.0% |
| GTTTCAATTGTCGGTGATAT+TGG | + | chr6_3:20113667-20113686 | None:intergenic | 35.0% | |
| !! | ATTTTAGGGGGAATAGGATA+TGG | - | chr6_3:20113876-20113895 | Msa0943910:CDS | 35.0% |
| !! | TTTTAGGGGGAATAGGATAT+GGG | - | chr6_3:20113877-20113896 | Msa0943910:CDS | 35.0% |
| GTGATCACAGTGTTTATCAA+TGG | - | chr6_3:20113918-20113937 | Msa0943910:CDS | 35.0% | |
| !! | GTAATATTGGTTCATTCCTC+TGG | - | chr6_3:20114002-20114021 | Msa0943910:CDS | 35.0% |
| AAGAAACCAAACTCATTGGT+TGG | + | chr6_3:20114038-20114057 | None:intergenic | 35.0% | |
| CATCAAGAAACCAAACTCAT+TGG | + | chr6_3:20114042-20114061 | None:intergenic | 35.0% | |
| !!! | TGTTTTGGTGTTTTTGTTCC+AGG | - | chr6_3:20114355-20114374 | Msa0943910:CDS | 35.0% |
| GTGAAACTGTGAGATCAAGA+TGG | - | chr6_3:20111825-20111844 | Msa0943910:intron | 40.0% | |
| ! | CTTGAGAAATTTGGAGCTGT+TGG | - | chr6_3:20111944-20111963 | Msa0943910:intron | 40.0% |
| !! | GTTTTGGATGAAACCCAGAA+AGG | + | chr6_3:20113117-20113136 | None:intergenic | 40.0% |
| CCTTGGGAAGACAAAATGAA+GGG | + | chr6_3:20113374-20113393 | None:intergenic | 40.0% | |
| !!! | CACTGTGATCTCCTTTTTTC+TGG | + | chr6_3:20113430-20113449 | None:intergenic | 40.0% |
| TTTAGGGGGAATAGGATATG+GGG | - | chr6_3:20113878-20113897 | Msa0943910:CDS | 40.0% | |
| ATGTCAATTGCAGTACCTCT+TGG | + | chr6_3:20113960-20113979 | None:intergenic | 40.0% | |
| TCAGTTCCAACCAATGAGTT+TGG | - | chr6_3:20114029-20114048 | Msa0943910:CDS | 40.0% | |
| ! | CTCACGGTTTCATCTTTTGG+TGG | + | chr6_3:20111911-20111930 | None:intergenic | 45.0% |
| !! | CTGCACTGGTATTGGTGATA+TGG | + | chr6_3:20112076-20112095 | None:intergenic | 45.0% |
| !! | AAGAGACAGAGAGGTACTGT+TGG | + | chr6_3:20112101-20112120 | None:intergenic | 45.0% |
| AACAGTACCTCTCTGTCTCT+TGG | - | chr6_3:20112100-20112119 | Msa0943910:CDS | 45.0% | |
| GGTTCGTCTTCATCATGTGT+TGG | - | chr6_3:20112202-20112221 | Msa0943910:CDS | 45.0% | |
| TCGTCTTCATCATGTGTTGG+TGG | - | chr6_3:20112205-20112224 | Msa0943910:CDS | 45.0% | |
| !! | GGGTTTGGTGGTTTGTACTT+AGG | - | chr6_3:20112292-20112311 | Msa0943910:intron | 45.0% |
| !! | GCTGAAGTGTTGTCCATTTG+AGG | + | chr6_3:20112337-20112356 | None:intergenic | 45.0% |
| ! | CCCTTCATTTTGTCTTCCCA+AGG | - | chr6_3:20113371-20113390 | Msa0943910:intron | 45.0% |
| GCCTTGGGAAGACAAAATGA+AGG | + | chr6_3:20113375-20113394 | None:intergenic | 45.0% | |
| CCTTTGTCACACTTTGCCTT+GGG | + | chr6_3:20113390-20113409 | None:intergenic | 45.0% | |
| TCCTTTGTCACACTTTGCCT+TGG | + | chr6_3:20113391-20113410 | None:intergenic | 45.0% | |
| TTAGGGGGAATAGGATATGG+GGG | - | chr6_3:20113879-20113898 | Msa0943910:CDS | 45.0% | |
| TATGGGGGGAGTAATGTTTC+AGG | - | chr6_3:20113894-20113913 | Msa0943910:CDS | 45.0% | |
| GTTCCAACAGAAATGCCAAG+AGG | - | chr6_3:20113942-20113961 | Msa0943910:CDS | 45.0% | |
| GTACCTCTTGGCATTTCTGT+TGG | + | chr6_3:20113948-20113967 | None:intergenic | 45.0% | |
| TTGATGCAGAACTTGCAGCA+TGG | - | chr6_3:20114056-20114075 | Msa0943910:CDS | 45.0% | |
| GCATGGTGAAAGCTACTATC+TGG | - | chr6_3:20114073-20114092 | Msa0943910:CDS | 45.0% | |
| !! | ATTAAACAAAAATTATTTAA+AGG | + | chr6_3:20112790-20112809 | None:intergenic | 5.0% |
| !! | TTTAAAAAATATATAAAAGT+AGG | + | chr6_3:20112899-20112918 | None:intergenic | 5.0% |
| !!! | TTTATTTATATTAATTTTAG+GGG | - | chr6_3:20113863-20113882 | Msa0943910:CDS | 5.0% |
| !! | TGAAATAAAAAAATTTATTT+AGG | + | chr6_3:20114302-20114321 | None:intergenic | 5.0% |
| AGTACTGCCACCGCTTAGTT+GGG | + | chr6_3:20112047-20112066 | None:intergenic | 50.0% | |
| !! | TGTTGGTGCTGCACTGGTAT+TGG | + | chr6_3:20112084-20112103 | None:intergenic | 50.0% |
| !! | TCATCATGTGTTGGTGGTGC+TGG | - | chr6_3:20112211-20112230 | Msa0943910:CDS | 50.0% |
| CCCAAGGCAAAGTGTGACAA+AGG | - | chr6_3:20113387-20113406 | Msa0943910:intron | 50.0% | |
| TAGGGGGAATAGGATATGGG+GGG | - | chr6_3:20113880-20113899 | Msa0943910:CDS | 50.0% | |
| CTTGTGCTTGCTTTGACACC+TGG | + | chr6_3:20114376-20114395 | None:intergenic | 50.0% | |
| CAGTACTGCCACCGCTTAGT+TGG | + | chr6_3:20112048-20112067 | None:intergenic | 55.0% | |
| !! | AGGTACTGTTGGTGCTGCAC+TGG | + | chr6_3:20112090-20112109 | None:intergenic | 55.0% |
| TGCAGCACCAAGAGACAGAG+AGG | + | chr6_3:20112110-20112129 | None:intergenic | 55.0% | |
| !! | CTGTCTCTTGGTGCTGCACT+TGG | - | chr6_3:20112112-20112131 | Msa0943910:CDS | 55.0% |
| !! | CTTGGTGCTGCACTTGGTCT+TGG | - | chr6_3:20112118-20112137 | Msa0943910:CDS | 55.0% |
| !! | TGTGTTGGTGGTGCTGGAGT+TGG | - | chr6_3:20112217-20112236 | Msa0943910:CDS | 55.0% |
| CTGCTGCTGGTGGAGAACAA+GGG | - | chr6_3:20112272-20112291 | Msa0943910:CDS | 55.0% | |
| GCTGGTGGAGAACAAGGGTT+TGG | - | chr6_3:20112277-20112296 | Msa0943910:intron | 55.0% | |
| GGTGGAGAACAAGGGTTTGG+TGG | - | chr6_3:20112280-20112299 | Msa0943910:intron | 55.0% | |
| GGTTGGAACTGAGACTCCAG+AGG | + | chr6_3:20114021-20114040 | None:intergenic | 55.0% | |
| ACTGCCACCGCTTAGTTGGG+CGG | + | chr6_3:20112044-20112063 | None:intergenic | 60.0% | |
| !! | GGTGCTGCACTTGGTCTTGG+TGG | - | chr6_3:20112121-20112140 | Msa0943910:CDS | 60.0% |
| !! | GGTGGTGCTGGAGTTGGTGT+TGG | - | chr6_3:20112223-20112242 | Msa0943910:CDS | 60.0% |
| !! | GCTGGAGTTGGTGTTGGTGC+TGG | - | chr6_3:20112229-20112248 | Msa0943910:CDS | 60.0% |
| !! | GTTGGTGTTGGTGCTGGTGC+TGG | - | chr6_3:20112235-20112254 | Msa0943910:CDS | 60.0% |
| !! | GTTGGTGCTGGTGCTGGTCT+TGG | - | chr6_3:20112241-20112260 | Msa0943910:CDS | 60.0% |
| !! | GCTGGTGCTGGTCTTGGTCT+TGG | - | chr6_3:20112247-20112266 | Msa0943910:CDS | 60.0% |
| !! | CTTGGTCTTGGTGCTGCTGC+TGG | - | chr6_3:20112259-20112278 | Msa0943910:CDS | 60.0% |
| GCTGCTGCTGGTGGAGAACA+AGG | - | chr6_3:20112271-20112290 | Msa0943910:CDS | 60.0% | |
| ! | GACGGCGTCTAGAGCGAGAG+CGG | + | chr6_3:20112003-20112022 | None:intergenic | 65.0% |
| ! | CTCGCTCTAGACGCCGTCAG+AGG | - | chr6_3:20112005-20112024 | Msa0943910:intron | 65.0% |
| ACGCCGTCAGAGGCAGATGC+AGG | - | chr6_3:20112015-20112034 | Msa0943910:intron | 65.0% | |
| CGGCCTGCATCTGCCTCTGA+CGG | + | chr6_3:20112021-20112040 | None:intergenic | 65.0% | |
| !! | GGTCTTGGTGCTGCTGCTGG+TGG | - | chr6_3:20112262-20112281 | Msa0943910:CDS | 65.0% |
| CAGGCCGCCGCCCAACTAAG+CGG | - | chr6_3:20112034-20112053 | Msa0943910:intron | 70.0% | |
| GCCACCGCTTAGTTGGGCGG+CGG | + | chr6_3:20112041-20112060 | None:intergenic | 70.0% | |
| GCCGCCGCCCAACTAAGCGG+TGG | - | chr6_3:20112037-20112056 | Msa0943910:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 20111749 | 20114425 | 20111749 | ID=Msa0943910;Name=Msa0943910 |
| chr6_3 | mRNA | 20111749 | 20114425 | 20111749 | ID=Msa0943910-mRNA-1;Parent=Msa0943910;Name=Msa0943910-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0.5|0.33|1|1|1|3|25|299 |
| chr6_3 | exon | 20111749 | 20111797 | 20111749 | ID=Msa0943910-mRNA-1:exon:6005;Parent=Msa0943910-mRNA-1 |
| chr6_3 | exon | 20112080 | 20112291 | 20112080 | ID=Msa0943910-mRNA-1:exon:6004;Parent=Msa0943910-mRNA-1 |
| chr6_3 | exon | 20113762 | 20114425 | 20113762 | ID=Msa0943910-mRNA-1:exon:6003;Parent=Msa0943910-mRNA-1 |
| chr6_3 | CDS | 20113762 | 20114425 | 20113762 | ID=Msa0943910-mRNA-1:cds;Parent=Msa0943910-mRNA-1 |
| chr6_3 | CDS | 20112080 | 20112291 | 20112080 | ID=Msa0943910-mRNA-1:cds;Parent=Msa0943910-mRNA-1 |
| chr6_3 | CDS | 20111774 | 20111797 | 20111774 | ID=Msa0943910-mRNA-1:cds;Parent=Msa0943910-mRNA-1 |
| chr6_3 | three_prime_UTR | 20111749 | 20111773 | 20111749 | ID=Msa0943910-mRNA-1:three_prime_utr;Parent=Msa0943910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
