AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0944130

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0944130 MtrunA17_Chr6g0460921 79.710 483 36 5 1 480 1 424 0.0 659
Msa0944130 MtrunA17_Chr5g0403241 35.196 179 113 3 298 475 1330 1506 1.52e-20 95.5
Msa0944130 MtrunA17_Chr4g0075321 36.667 180 109 4 298 475 887 1063 7.62e-20 93.2
Msa0944130 MtrunA17_Chr1g0183321 32.500 160 102 3 297 453 563 719 4.34e-19 90.5
Msa0944130 MtrunA17_Chr7g0255181 31.004 229 132 8 269 473 476 702 6.34e-19 90.1
Msa0944130 MtrunA17_Chr7g0262001 34.161 161 98 4 297 453 519 675 1.62e-18 88.6
Msa0944130 MtrunA17_Chr1g0190311 34.756 164 94 4 297 453 460 617 6.70e-18 86.7
Msa0944130 MtrunA17_Chr8g0373821 34.254 181 101 6 298 471 364 533 9.79e-18 85.9
Msa0944130 MtrunA17_Chr5g0399801 29.876 241 124 10 274 475 854 1088 3.12e-17 85.1
Msa0944130 MtrunA17_Chr3g0125251 32.663 199 107 9 281 475 1289 1464 3.89e-17 85.1
Msa0944130 MtrunA17_Chr4g0003511 28.631 241 127 9 274 475 817 1051 2.10e-16 82.4
Msa0944130 MtrunA17_Chr4g0003501 28.452 239 128 8 274 475 722 954 4.61e-16 81.3
Msa0944130 MtrunA17_Chr1g0163051 26.244 221 137 6 272 467 440 659 4.29e-15 77.8
Msa0944130 MtrunA17_Chr6g0477001 28.505 214 126 8 272 478 63 256 1.71e-14 74.7
Msa0944130 MtrunA17_Chr1g0149581 31.410 156 89 6 324 475 1524 1665 2.50e-14 75.9
Msa0944130 MtrunA17_Chr2g0305371 28.899 218 122 9 263 478 288 474 1.36e-13 72.8
Msa0944130 MtrunA17_Chr8g0368911 28.019 207 119 7 274 453 546 749 1.96e-13 72.8
Msa0944130 MtrunA17_Chr1g0163041 26.364 220 134 7 274 467 361 578 7.68e-13 70.9
Msa0944130 MtrunA17_Chr1g0149611 29.032 155 92 6 325 475 367 507 2.49e-12 68.9
Msa0944130 MtrunA17_Chr1g0201311 28.780 205 117 7 275 471 36 219 3.04e-12 68.6
Msa0944130 MtrunA17_Chr1g0201621 28.293 205 118 7 275 471 36 219 9.76e-12 67.0
Msa0944130 MtrunA17_Chr1g0170651 31.169 231 118 11 271 478 336 548 3.75e-11 65.5
Msa0944130 MtrunA17_Chr7g0232981 25.909 220 126 10 287 475 302 515 8.25e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0944130 AT3G03750.2 58.667 225 81 4 267 480 131 354 3.16e-79 251
Msa0944130 AT3G03750.2 36.364 121 67 2 26 138 28 146 3.15e-14 74.3
Msa0944130 AT3G03750.1 54.222 225 75 5 267 480 131 338 6.22e-68 221
Msa0944130 AT3G03750.1 35.772 123 65 3 26 138 28 146 2.37e-14 74.7
Msa0944130 AT1G04050.3 33.333 162 101 3 294 453 436 592 3.93e-19 90.9
Msa0944130 AT1G04050.2 32.275 189 119 4 269 453 513 696 7.24e-19 90.1
Msa0944130 AT1G04050.1 32.275 189 119 4 269 453 513 696 7.24e-19 90.1
Msa0944130 AT3G04380.4 32.911 158 102 2 297 452 279 434 9.64e-18 86.3
Msa0944130 AT3G04380.2 32.911 158 102 2 297 452 252 407 9.64e-18 85.9
Msa0944130 AT3G04380.6 32.911 158 102 2 297 452 252 407 9.68e-18 85.9
Msa0944130 AT3G04380.1 32.911 158 102 2 297 452 279 434 1.03e-17 86.3
Msa0944130 AT3G04380.5 32.911 158 102 2 297 452 236 391 1.08e-17 85.9
Msa0944130 AT3G04380.3 32.911 158 102 2 297 452 263 418 1.23e-17 85.9
Msa0944130 AT5G43990.8 32.075 159 100 3 297 453 458 610 5.32e-17 84.3
Msa0944130 AT5G43990.12 32.075 159 100 3 297 453 458 610 5.32e-17 84.3
Msa0944130 AT5G43990.6 32.075 159 100 3 297 453 458 610 5.32e-17 84.3
Msa0944130 AT5G43990.13 32.075 159 100 3 297 453 458 610 5.32e-17 84.3
Msa0944130 AT5G43990.7 32.075 159 100 3 297 453 438 590 7.37e-17 84.0
Msa0944130 AT5G43990.9 32.075 159 100 3 297 453 550 702 1.01e-16 83.6
Msa0944130 AT5G43990.2 32.075 159 100 3 297 453 550 702 1.01e-16 83.6
Msa0944130 AT5G43990.3 32.075 159 100 3 297 453 527 679 1.04e-16 83.6
Msa0944130 AT5G43990.11 32.075 159 100 3 297 453 527 679 1.04e-16 83.6
Msa0944130 AT5G43990.1 32.075 159 100 3 297 453 527 679 1.04e-16 83.6
Msa0944130 AT5G43990.4 32.075 159 100 3 297 453 527 679 1.04e-16 83.6
Msa0944130 AT5G43990.16 32.075 159 100 3 297 453 507 659 1.18e-16 83.2
Msa0944130 AT5G43990.5 32.075 159 100 3 297 453 507 659 1.18e-16 83.2
Msa0944130 AT5G43990.17 32.075 159 100 3 297 453 507 659 1.18e-16 83.2
Msa0944130 AT5G43990.14 32.075 159 100 3 297 453 507 659 1.18e-16 83.2
Msa0944130 AT5G43990.15 32.075 159 100 3 297 453 530 682 1.26e-16 83.2
Msa0944130 AT5G43990.10 32.075 159 100 3 297 453 530 682 1.26e-16 83.2
Msa0944130 AT1G73100.1 30.417 240 129 10 273 475 430 668 1.40e-16 83.2
Msa0944130 AT2G33290.1 28.507 221 127 8 274 467 435 651 3.75e-16 81.6
Msa0944130 AT2G33290.3 28.507 221 127 8 274 467 435 651 3.75e-16 81.6
Msa0944130 AT2G33290.4 28.507 221 127 8 274 467 435 651 3.75e-16 81.6
Msa0944130 AT2G33290.2 28.507 221 127 8 274 467 435 651 3.75e-16 81.6
Msa0944130 AT4G30860.1 28.455 246 139 10 242 475 244 464 1.44e-15 79.3
Msa0944130 AT4G13460.1 29.245 212 132 6 272 467 441 650 8.94e-15 77.4
Msa0944130 AT4G13460.2 29.245 212 132 6 272 467 441 650 8.94e-15 77.4
Msa0944130 AT2G35160.2 25.610 246 123 10 257 475 581 793 2.08e-14 76.3
Msa0944130 AT2G35160.3 25.610 246 123 10 257 475 581 793 2.08e-14 76.3
Msa0944130 AT2G35160.1 25.610 246 123 10 257 475 581 793 2.08e-14 76.3
Msa0944130 AT2G35160.4 25.610 246 123 10 257 475 581 793 2.08e-14 76.3
Msa0944130 AT2G35160.5 25.610 246 123 10 257 475 545 757 2.59e-14 76.3
Msa0944130 AT5G04940.2 30.808 198 115 7 298 475 474 669 5.47e-14 75.1
Msa0944130 AT5G04940.1 30.808 198 115 7 298 475 474 669 5.47e-14 75.1
Msa0944130 AT1G76710.2 28.708 209 120 7 275 475 41 228 6.74e-14 74.3
Msa0944130 AT1G76710.1 28.708 209 120 7 275 475 41 228 6.74e-14 74.3
Msa0944130 AT1G76710.4 28.708 209 120 7 275 475 41 228 7.14e-14 74.3
Msa0944130 AT1G76710.3 28.708 209 120 7 275 475 41 228 7.52e-14 74.3
Msa0944130 AT2G22740.2 30.303 198 116 7 298 475 594 789 1.63e-13 73.6
Msa0944130 AT2G22740.1 30.303 198 116 7 298 475 594 789 1.63e-13 73.6
Msa0944130 AT1G77300.1 29.146 199 114 9 281 475 991 1166 1.50e-12 70.9
Msa0944130 AT1G77300.2 29.146 199 114 9 281 475 991 1166 1.85e-12 70.5
Msa0944130 AT5G42400.7 31.724 145 79 7 333 475 1261 1387 2.78e-11 66.6
Msa0944130 AT5G42400.2 31.724 145 79 7 333 475 1261 1387 2.78e-11 66.6
Msa0944130 AT5G42400.8 31.724 145 79 7 333 475 1261 1387 2.78e-11 66.6
Msa0944130 AT5G42400.5 31.724 145 79 7 333 475 1261 1387 2.78e-11 66.6
Msa0944130 AT5G42400.4 31.724 145 79 7 333 475 1261 1387 2.78e-11 66.6
Msa0944130 AT5G42400.1 31.724 145 79 7 333 475 1261 1387 2.78e-11 66.6
Msa0944130 AT5G42400.3 31.724 145 79 7 333 475 1261 1387 2.78e-11 66.6
Msa0944130 AT5G42400.6 31.724 145 79 7 333 475 1261 1387 2.78e-11 66.6

Find 159 sgRNAs with CRISPR-Local

Find 280 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGAAGGTGTTTGTGAAAA+TGG 0.149172 6_3:+20655959 Msa0944130:CDS
GGGTTAGATATGGTAGAATT+AGG 0.206484 6_3:-20655655 None:intergenic
AGCACCCCATGGTTGATAAT+TGG 0.206933 6_3:-20655876 None:intergenic
GATGGGTCTGTGGGAGATGG+TGG 0.241518 6_3:+20656187 Msa0944130:CDS
ATGGGGTTTGTTTGCGAATC+AGG 0.258812 6_3:+20656558 Msa0944130:CDS
GTCAAAATGGGGTTAATGTT+AGG 0.261254 6_3:+20656503 Msa0944130:CDS
TTTGATGTCGGCTGTGAAAA+TGG 0.282379 6_3:+20656271 Msa0944130:CDS
AATGGGTCAGTGGGAGGTGG+TGG 0.285953 6_3:+20655977 Msa0944130:CDS
GGGAATAGGGTGAGTCAAAA+TGG 0.296690 6_3:+20656490 Msa0944130:CDS
ATTGCTGCTACTCGATTTCC+TGG 0.299858 6_3:-20655573 None:intergenic
TGATGATTTGGGTGAGTTTA+CGG 0.314004 6_3:-20655718 None:intergenic
GGTGTGGTGGTGGGAAAGGA+TGG 0.325731 6_3:+20656539 Msa0944130:CDS
GCACCCCATGGTTGATAATT+GGG 0.332864 6_3:-20655875 None:intergenic
TGCGACGGAGGGTGATGATT+TGG 0.335813 6_3:-20655730 None:intergenic
GGGTCAGTGGGAGGTGGTGG+GGG 0.342021 6_3:+20655980 Msa0944130:CDS
AGGAGGGTTGTTGTTGTTGA+TGG 0.349153 6_3:-20655804 None:intergenic
TGTGGGCTGGGTTGTTTATG+TGG 0.352457 6_3:+20656457 Msa0944130:CDS
GTGGGAGGGAGTGTGGGAAT+AGG 0.355883 6_3:+20656476 Msa0944130:CDS
GTTCATGGGTCAGTGAGTTT+TGG 0.359262 6_3:+20656040 Msa0944130:CDS
GGGTCTGTGGGAGATGGTGG+GGG 0.359874 6_3:+20656190 Msa0944130:CDS
TGGGTCTGTGGGAGATGGTG+GGG 0.360670 6_3:+20656189 Msa0944130:CDS
GGTTAGATATGGTAGAATTA+GGG 0.360685 6_3:-20655654 None:intergenic
TTGTTGATGGTGTTGAGAAA+TGG 0.363547 6_3:-20655791 None:intergenic
TGTTTATGTGGGAGGGAGTG+TGG 0.364351 6_3:+20656469 Msa0944130:CDS
GTGGGCTGGGTTGTTTATGT+GGG 0.366645 6_3:+20656458 Msa0944130:CDS
TCATCATCGTCAACCGTTCT+AGG 0.372941 6_3:-20656340 None:intergenic
TGGGTCAGTGGGAGGTGGTG+GGG 0.373860 6_3:+20655979 Msa0944130:CDS
TGCAACAGCCTTTCTTGCCT+TGG 0.379800 6_3:+20658607 Msa0944130:CDS
TGGGAGGGAGTGTGGGAATA+GGG 0.381770 6_3:+20656477 Msa0944130:CDS
CCACCACCGCCCAATGTTCA+TGG 0.391003 6_3:+20656025 Msa0944130:CDS
CGCATGAATGATTTACAAAC+CGG 0.393320 6_3:-20658432 None:intergenic
GGAATAGGGTGAGTCAAAAT+GGG 0.393994 6_3:+20656491 Msa0944130:CDS
AATTCTGTCATTTCAGATGA+TGG 0.394308 6_3:+20655908 Msa0944130:CDS
ATGGGTCTGTGGGAGATGGT+GGG 0.396576 6_3:+20656188 Msa0944130:CDS
AAGGTGTCTGTGATGATGGT+GGG 0.397856 6_3:+20656074 Msa0944130:CDS
TTGAAGGTGTTTGTGAAAAT+GGG 0.399091 6_3:+20655960 Msa0944130:CDS
ATGTTAGGGTTAAGATTGTA+TGG 0.402236 6_3:+20656518 Msa0944130:CDS
TTTGATGGGGTTGATGGTAT+TGG 0.404345 6_3:+20656427 Msa0944130:CDS
GTGTGGTGGTGGGAAAGGAT+GGG 0.406058 6_3:+20656540 Msa0944130:CDS
ATTGGAAGAGAGTGTGGGCT+GGG 0.407013 6_3:+20656445 Msa0944130:CDS
AATGGGAAGGTGGGAGGCAG+TGG 0.411038 6_3:+20656289 Msa0944130:CDS
TGTGGTGGTGGGAAAGGATG+GGG 0.412443 6_3:+20656541 Msa0944130:CDS
TTGATCGCTCTAGGCGGAAT+TGG 0.412949 6_3:-20656229 None:intergenic
GTGTATAGAAAGTAGGAGTA+AGG 0.416895 6_3:-20655824 None:intergenic
AAGATTGTATGGTGTGGTGG+TGG 0.420334 6_3:+20656529 Msa0944130:CDS
ATTCCGCCGGTTGATGAAGT+TGG 0.420784 6_3:+20656118 Msa0944130:CDS
TTCCGCCGGTTGATGAAGTT+GGG 0.426029 6_3:+20656119 Msa0944130:CDS
TGTTGATGGTGTTGAGAAAT+GGG 0.426613 6_3:-20655790 None:intergenic
GTTTATGTGGGAGGGAGTGT+GGG 0.429146 6_3:+20656470 Msa0944130:CDS
GGAAGGTGTGTATAGAAAGT+AGG 0.432399 6_3:-20655831 None:intergenic
TCAAAATGGGGTTAATGTTA+GGG 0.434140 6_3:+20656504 Msa0944130:CDS
CTCACTGACCCATGAACATT+GGG 0.436910 6_3:-20656034 None:intergenic
ACAACAACATTATGATGAAC+TGG 0.439102 6_3:+20658300 Msa0944130:CDS
GGCTGGGTTGTTTATGTGGG+AGG 0.444900 6_3:+20656461 Msa0944130:CDS
ACCGGCCCAACTTCATCAAC+CGG 0.447528 6_3:-20656124 None:intergenic
GATGATGGGTCGGTGAGATT+TGG 0.451262 6_3:+20655923 Msa0944130:CDS
GAAGTTGGGCCGGTGAAGTT+TGG 0.452392 6_3:+20656133 Msa0944130:CDS
GCGACGGAGGGTGATGATTT+GGG 0.460306 6_3:-20655729 None:intergenic
TGTGAAGGTGTCTGTGATGA+TGG 0.467165 6_3:+20656070 Msa0944130:CDS
GTATGGTGTGGTGGTGGGAA+AGG 0.470460 6_3:+20656535 Msa0944130:CDS
AATTATCAACCATGGGGTGC+TGG 0.471919 6_3:+20655878 Msa0944130:CDS
GCTGGGTTGTTTATGTGGGA+GGG 0.473425 6_3:+20656462 Msa0944130:CDS
GGGAAGGTGGGAGGCAGTGG+TGG 0.474291 6_3:+20656292 Msa0944130:CDS
GCAGTGACACGGCCGCCCAT+TGG 0.475968 6_3:-20658587 None:intergenic
ATGGGTCAGTGGGAGGTGGT+GGG 0.475978 6_3:+20655978 Msa0944130:CDS
TTTCAAGGTGTATGTGATGA+TGG 0.478220 6_3:+20656169 Msa0944130:CDS
CTCAAACATGCCTTTCCTGA+TGG 0.478841 6_3:-20658373 None:intergenic
GATGATGGGTCTGTGGGAGA+TGG 0.479549 6_3:+20656184 Msa0944130:CDS
GAAGGTGTCTGTGATGATGG+TGG 0.479890 6_3:+20656073 Msa0944130:CDS
GTAAGGGAACATCTTCCATC+AGG 0.484888 6_3:+20658358 Msa0944130:CDS
TATAGAAAGTAGGAGTAAGG+AGG 0.488395 6_3:-20655821 None:intergenic
GAGTTCTTGTTTCAATATGC+AGG 0.491591 6_3:+20656595 Msa0944130:CDS
GATGATGACTCAGTGAGATT+TGG 0.499430 6_3:+20656355 Msa0944130:CDS
GAAAATGGGTCAGTGGGAGG+TGG 0.507865 6_3:+20655974 Msa0944130:CDS
CTCAAAGGTTCGCGAAGCGT+CGG 0.508842 6_3:-20655756 None:intergenic
AACTTTCAAGTGTCTTCTGA+GGG 0.512350 6_3:-20658637 None:intergenic
CAACTTTCAAGTGTCTTCTG+AGG 0.513305 6_3:-20658638 None:intergenic
ATAGAAAGTAGGAGTAAGGA+GGG 0.513373 6_3:-20655820 None:intergenic
GCAATGTTCCAAGGCAAGAA+AGG 0.514478 6_3:-20658615 None:intergenic
ACTCACTGACCCATGAACAT+TGG 0.514586 6_3:-20656035 None:intergenic
GAATCAGGTTGTTCGTAAAG+AGG 0.515528 6_3:+20656573 Msa0944130:CDS
CCATGAACATTGGGCGGTGG+TGG 0.517471 6_3:-20656025 None:intergenic
GCCGGTTGATGAAGTTGGGC+CGG 0.518021 6_3:+20656123 Msa0944130:CDS
CAACCATGGGGTGCTGGAGA+GGG 0.524783 6_3:+20655884 Msa0944130:CDS
AGTTGTGTGTGGGTTAGATA+TGG 0.525928 6_3:-20655665 None:intergenic
AGGTGTCTGTGATGATGGTG+GGG 0.526062 6_3:+20656075 Msa0944130:CDS
ATTCTGTCATTTCAGATGAT+GGG 0.526380 6_3:+20655909 Msa0944130:CDS
CACCCCATGGTTGATAATTG+GGG 0.526836 6_3:-20655874 None:intergenic
TTTGCAGGTTAGGGAGATGT+TGG 0.531757 6_3:-20655690 None:intergenic
TATTGGAAGAGAGTGTGGGC+TGG 0.532478 6_3:+20656444 Msa0944130:CDS
AGATGTTGGCGAGTTGTGTG+TGG 0.533165 6_3:-20655676 None:intergenic
TTCACCAATGCCGCCTAGAA+CGG 0.533827 6_3:+20656327 Msa0944130:CDS
GGGTGTTGTGAGAGAGAATG+AGG 0.533858 6_3:-20655853 None:intergenic
AGTAATTTCACTAATTCCGC+CGG 0.536149 6_3:+20656105 Msa0944130:CDS
AAATCAGGAAAAGGTCCAAT+GGG 0.543500 6_3:+20658572 Msa0944130:CDS
TCAACCATGGGGTGCTGGAG+AGG 0.544302 6_3:+20655883 Msa0944130:CDS
GGGCCGGTGAAGTTTGGTGT+TGG 0.548634 6_3:+20656139 Msa0944130:CDS
GGCTGTGAAAATGGGAAGGT+GGG 0.549330 6_3:+20656280 Msa0944130:CDS
GCTATGGAGAAATCAGGAAA+AGG 0.549928 6_3:+20658563 Msa0944130:CDS
CACCACCGCCCAATGTTCAT+GGG 0.551289 6_3:+20656026 Msa0944130:CDS
TTTGTAAATCATTCATGCGA+TGG 0.552323 6_3:+20658436 Msa0944130:CDS
TCAACCGTTCTAGGCGGCAT+TGG 0.553131 6_3:-20656331 None:intergenic
GTTAAGATTGTATGGTGTGG+TGG 0.553358 6_3:+20656526 Msa0944130:CDS
GGGTCGGTGAGATTTGGTGT+TGG 0.554917 6_3:+20655929 Msa0944130:CDS
ATGGTGTTGAGAAATGGGAT+TGG 0.561886 6_3:-20655785 None:intergenic
TTGATGTCGGCTGTGAAAAT+GGG 0.561974 6_3:+20656272 Msa0944130:CDS
AGCGATCAATGATGAGGGAT+CGG 0.563609 6_3:+20656243 Msa0944130:CDS
GATGTTGGCGAGTTGTGTGT+GGG 0.577849 6_3:-20655675 None:intergenic
TGTGAAAATGGGAAGGTGGG+AGG 0.578139 6_3:+20656283 Msa0944130:CDS
GAAAGGCTGTTGCAGTGACA+CGG 0.578224 6_3:-20658598 None:intergenic
GGTGTTGTGAGAGAGAATGA+GGG 0.579242 6_3:-20655852 None:intergenic
GTTTGTGAAAATGGGTCAGT+GGG 0.582712 6_3:+20655968 Msa0944130:CDS
GAAATCAGGAAAAGGTCCAA+TGG 0.584950 6_3:+20658571 Msa0944130:CDS
CCCTCATCATTGATCGCTCT+AGG 0.585223 6_3:-20656238 None:intergenic
GTATGTGATGATGGGTCTGT+GGG 0.586844 6_3:+20656178 Msa0944130:CDS
AGGGTTAAGATTGTATGGTG+TGG 0.589173 6_3:+20656523 Msa0944130:CDS
CTTCTGAGGGCAATGTTCCA+AGG 0.591471 6_3:-20658624 None:intergenic
CATCCAACACCAAACTTCAC+CGG 0.591738 6_3:-20656142 None:intergenic
GATGGTATTGGAAGAGAGTG+TGG 0.592186 6_3:+20656439 Msa0944130:CDS
AGATTGTATGGTGTGGTGGT+GGG 0.598218 6_3:+20656530 Msa0944130:CDS
GTAAATCATTCATGCGATGG+TGG 0.599638 6_3:+20658439 Msa0944130:CDS
TGTATGTGATGATGGGTCTG+TGG 0.599715 6_3:+20656177 Msa0944130:CDS
TTGTCTCCTCTGTGCTTCCG+TGG 0.600236 6_3:-20658281 None:intergenic
GGTGTCTGTGATGATGGTGG+GGG 0.600282 6_3:+20656076 Msa0944130:CDS
ATGGTATTGGAAGAGAGTGT+GGG 0.600749 6_3:+20656440 Msa0944130:CDS
TTCAAGGTGTATGTGATGAT+GGG 0.600792 6_3:+20656170 Msa0944130:CDS
CGGCTGTGAAAATGGGAAGG+TGG 0.602479 6_3:+20656279 Msa0944130:CDS
TGTGAAAATGGGTCAGTGGG+AGG 0.603851 6_3:+20655971 Msa0944130:CDS
TTGCTGCTACTCGATTTCCT+GGG 0.607135 6_3:-20655572 None:intergenic
TGGGATTGGATGATTCTCAA+AGG 0.608658 6_3:-20655771 None:intergenic
ACTTGAAAGTTGAAACATGT+AGG 0.614206 6_3:+20658649 Msa0944130:exon
CCTAGAGCGATCAATGATGA+GGG 0.616958 6_3:+20656238 Msa0944130:CDS
TATGATGAACTGGCATCGCG+TGG 0.618128 6_3:+20658310 Msa0944130:CDS
GGAACATCTTCCATCAGGAA+AGG 0.618170 6_3:+20658363 Msa0944130:CDS
TGTCATTTCAGATGATGGGT+CGG 0.619359 6_3:+20655913 Msa0944130:CDS
AAGCGTCGGAGATGCGACGG+AGG 0.619688 6_3:-20655742 None:intergenic
GCCTAGAGCGATCAATGATG+AGG 0.620250 6_3:+20656237 Msa0944130:CDS
AGCGTCGGAGATGCGACGGA+GGG 0.627600 6_3:-20655741 None:intergenic
GACCCATGAACATTGGGCGG+TGG 0.631173 6_3:-20656028 None:intergenic
AGGAAATCGAGTAGCAGCAA+TGG 0.633956 6_3:+20655575 Msa0944130:CDS
TTGTGAGAGAGAATGAGGGA+AGG 0.639314 6_3:-20655848 None:intergenic
TTACCCTCTCCAGCACCCCA+TGG 0.643090 6_3:-20655887 None:intergenic
GACTCAGTGAGATTTGGTGT+GGG 0.645287 6_3:+20656361 Msa0944130:CDS
GGTGTGGGATGTGAGTGTGA+AGG 0.647547 6_3:+20656376 Msa0944130:CDS
CCACACAGATGAAGATACCC+AGG 0.648722 6_3:+20655555 None:intergenic
GAATAGGGTGAGTCAAAATG+GGG 0.650157 6_3:+20656492 Msa0944130:CDS
ACCCCATGGTTGATAATTGG+GGG 0.658176 6_3:-20655873 None:intergenic
ACTGACCCATGAACATTGGG+CGG 0.662499 6_3:-20656031 None:intergenic
TGTTTGTGAAAATGGGTCAG+TGG 0.667809 6_3:+20655967 Msa0944130:CDS
TCAGGAAAAGGTCCAATGGG+CGG 0.668437 6_3:+20658575 Msa0944130:CDS
GCATGAATGATTTACAAACC+GGG 0.668682 6_3:-20658431 None:intergenic
GGCCCAACTTCATCAACCGG+CGG 0.669512 6_3:-20656121 None:intergenic
TCATCGTCAACCGTTCTAGG+CGG 0.675310 6_3:-20656337 None:intergenic
TGACTCAGTGAGATTTGGTG+TGG 0.677273 6_3:+20656360 Msa0944130:CDS
GGATCGGTGAGATTTGATGT+CGG 0.688756 6_3:+20656259 Msa0944130:CDS
AGGTGAACTACTGACAACCA+CGG 0.715721 6_3:+20658264 Msa0944130:intron
TGTCGGCTGTGAAAATGGGA+AGG 0.718334 6_3:+20656276 Msa0944130:CDS
TCATCATTGATCGCTCTAGG+CGG 0.724077 6_3:-20656235 None:intergenic
TGACAACCACGGAAGCACAG+AGG 0.752462 6_3:+20658275 Msa0944130:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATATTTAATTTTTAGGTA+TGG + chr6_3:20657058-20657077 Msa0944130:intron 10.0%
!!! TATGTAAAAAGTTACTTTAT+AGG + chr6_3:20657547-20657566 Msa0944130:intron 15.0%
!!! TGTATTTAAGTTAATAGTTA+AGG + chr6_3:20657718-20657737 Msa0944130:intron 15.0%
!!! ATATTTTAGTATTTTTGCGT+AGG + chr6_3:20656695-20656714 Msa0944130:intron 20.0%
!! GATCAATTCTAAATTTCTAA+TGG - chr6_3:20656846-20656865 None:intergenic 20.0%
!! AAACTTAATATTTCACTCAA+GGG - chr6_3:20657436-20657455 None:intergenic 20.0%
!! TCTTAACAAGCTAATAATTA+GGG - chr6_3:20657483-20657502 None:intergenic 20.0%
!! ATCTTAACAAGCTAATAATT+AGG - chr6_3:20657484-20657503 None:intergenic 20.0%
!!! TAACTTAAATACAAAAGTAC+AGG - chr6_3:20657711-20657730 None:intergenic 20.0%
!! TTATCAAATATGAGTCTATT+TGG + chr6_3:20657817-20657836 Msa0944130:intron 20.0%
!!! ATGCTTGTAAAATTAATTTG+CGG + chr6_3:20658226-20658245 Msa0944130:intron 20.0%
!!! ACATGTAGGAATTTTTATTT+TGG + chr6_3:20658663-20658682 Msa0944130:three_prime_UTR 20.0%
!!! AGTGTATGTGTTTTTTTGAT+GGG + chr6_3:20656413-20656432 Msa0944130:CDS 25.0%
! GTGATTGTTTGATTGATTAT+AGG + chr6_3:20656650-20656669 Msa0944130:intron 25.0%
! TGATTATAGGATTGTAACAT+TGG + chr6_3:20656663-20656682 Msa0944130:intron 25.0%
!! ATTTAGAATTGATCCGAATT+TGG + chr6_3:20656852-20656871 Msa0944130:intron 25.0%
!!! CAAAATTTTAGCACCAAATT+CGG - chr6_3:20656868-20656887 None:intergenic 25.0%
!! ATCAGAATTATTCACCTTTT+GGG - chr6_3:20657168-20657187 None:intergenic 25.0%
! ATGAAAAACCAGAAAATACT+TGG - chr6_3:20657262-20657281 None:intergenic 25.0%
!!! GTATTTTCTGGTTTTTCATA+CGG + chr6_3:20657263-20657282 Msa0944130:intron 25.0%
! GAAACTTAATATTTCACTCA+AGG - chr6_3:20657437-20657456 None:intergenic 25.0%
!!! TTATTAGCTTGTTAAGATGA+TGG + chr6_3:20657486-20657505 Msa0944130:intron 25.0%
! TTTATACTATAGTAGGAACA+CGG + chr6_3:20657591-20657610 Msa0944130:intron 25.0%
! GACTAATATAGAGATTTGAA+AGG + chr6_3:20657756-20657775 Msa0944130:intron 25.0%
!!! TTTGTTTTCATAAGCTGTTT+CGG - chr6_3:20657948-20657967 None:intergenic 25.0%
!! CTTTAGTTCATAAGCATATA+TGG - chr6_3:20658083-20658102 None:intergenic 25.0%
!! ATTTTACAAGCATTTGTGTA+GGG - chr6_3:20658219-20658238 None:intergenic 25.0%
!! AATTTTACAAGCATTTGTGT+AGG - chr6_3:20658220-20658239 None:intergenic 25.0%
GGTTAGATATGGTAGAATTA+GGG - chr6_3:20655657-20655676 None:intergenic 30.0%
! AATTCTGTCATTTCAGATGA+TGG + chr6_3:20655908-20655927 Msa0944130:CDS 30.0%
! ATTCTGTCATTTCAGATGAT+GGG + chr6_3:20655909-20655928 Msa0944130:CDS 30.0%
!! TTTGAAGGTGTTTGTGAAAA+TGG + chr6_3:20655959-20655978 Msa0944130:CDS 30.0%
!! TTGAAGGTGTTTGTGAAAAT+GGG + chr6_3:20655960-20655979 Msa0944130:CDS 30.0%
!!! GAGTGTATGTGTTTTTTTGA+TGG + chr6_3:20656412-20656431 Msa0944130:CDS 30.0%
!!! GTGTATGTGTTTTTTTGATG+GGG + chr6_3:20656414-20656433 Msa0944130:CDS 30.0%
TCAAAATGGGGTTAATGTTA+GGG + chr6_3:20656504-20656523 Msa0944130:CDS 30.0%
ATGTTAGGGTTAAGATTGTA+TGG + chr6_3:20656518-20656537 Msa0944130:CDS 30.0%
!! GATTGATTTGAATTTGAACG+TGG + chr6_3:20656717-20656736 Msa0944130:intron 30.0%
TTGAATTTGAACGTGGAATT+TGG + chr6_3:20656724-20656743 Msa0944130:intron 30.0%
!!! GTGTTTTTGTGTTTTAGAGT+TGG + chr6_3:20656810-20656829 Msa0944130:intron 30.0%
! GAAATCATAAAGTGCTTGTT+TGG + chr6_3:20656926-20656945 Msa0944130:intron 30.0%
! CATCAGAATTATTCACCTTT+TGG - chr6_3:20657169-20657188 None:intergenic 30.0%
! TTTTGTTCTACTTGAGAATG+TGG - chr6_3:20657377-20657396 None:intergenic 30.0%
TTAATATTTCACTCAAGGGA+AGG - chr6_3:20657432-20657451 None:intergenic 30.0%
! TTGTTAAGATGATGGTCTAT+AGG + chr6_3:20657494-20657513 Msa0944130:intron 30.0%
!! TTATAGGTGCTCTAAGAAAT+CGG + chr6_3:20657563-20657582 Msa0944130:intron 30.0%
TTATACTATAGTAGGAACAC+GGG + chr6_3:20657592-20657611 Msa0944130:intron 30.0%
!! ATTGATTTTGCCTTCTAAGT+GGG - chr6_3:20657634-20657653 None:intergenic 30.0%
!! AATTGATTTTGCCTTCTAAG+TGG - chr6_3:20657635-20657654 None:intergenic 30.0%
CAAATTGCAATATGTTGAGT+AGG + chr6_3:20657657-20657676 Msa0944130:intron 30.0%
AATACGTTGAAAACAGCTTA+TGG - chr6_3:20657913-20657932 None:intergenic 30.0%
! TTTGCTATGTTAAGGTGATT+GGG + chr6_3:20658139-20658158 Msa0944130:intron 30.0%
ACAACAACATTATGATGAAC+TGG + chr6_3:20658300-20658319 Msa0944130:CDS 30.0%
AACATAGACGCAACAAAAAT+AGG + chr6_3:20658400-20658419 Msa0944130:CDS 30.0%
TTTGTAAATCATTCATGCGA+TGG + chr6_3:20658436-20658455 Msa0944130:CDS 30.0%
! AAGTAAGCTCTTCATCTTTT+TGG - chr6_3:20658540-20658559 None:intergenic 30.0%
ACTTGAAAGTTGAAACATGT+AGG + chr6_3:20658649-20658668 Msa0944130:exon 30.0%
!!! TTTTGGTTTTAACGAGATGA+TGG + chr6_3:20658680-20658699 Msa0944130:three_prime_UTR 30.0%
!!! TTTGGTTTTAACGAGATGAT+GGG + chr6_3:20658681-20658700 Msa0944130:three_prime_UTR 30.0%
GGGTTAGATATGGTAGAATT+AGG - chr6_3:20655658-20655677 None:intergenic 35.0%
! TGATGATTTGGGTGAGTTTA+CGG - chr6_3:20655721-20655740 None:intergenic 35.0%
!! TGTTGATGGTGTTGAGAAAT+GGG - chr6_3:20655793-20655812 None:intergenic 35.0%
!! TTGTTGATGGTGTTGAGAAA+TGG - chr6_3:20655794-20655813 None:intergenic 35.0%
ATAGAAAGTAGGAGTAAGGA+GGG - chr6_3:20655823-20655842 None:intergenic 35.0%
TATAGAAAGTAGGAGTAAGG+AGG - chr6_3:20655824-20655843 None:intergenic 35.0%
GTGTATAGAAAGTAGGAGTA+AGG - chr6_3:20655827-20655846 None:intergenic 35.0%
AGTAATTTCACTAATTCCGC+CGG + chr6_3:20656105-20656124 Msa0944130:CDS 35.0%
!! GGTGTTGGATGTAATTTTCA+AGG + chr6_3:20656154-20656173 Msa0944130:CDS 35.0%
TTTCAAGGTGTATGTGATGA+TGG + chr6_3:20656169-20656188 Msa0944130:CDS 35.0%
TTCAAGGTGTATGTGATGAT+GGG + chr6_3:20656170-20656189 Msa0944130:CDS 35.0%
!!! TGTTTTTTTGATGGGGTTGA+TGG + chr6_3:20656421-20656440 Msa0944130:CDS 35.0%
GTCAAAATGGGGTTAATGTT+AGG + chr6_3:20656503-20656522 Msa0944130:CDS 35.0%
! GAGTTCTTGTTTCAATATGC+AGG + chr6_3:20656595-20656614 Msa0944130:CDS 35.0%
AATTTGAACGTGGAATTTGG+AGG + chr6_3:20656727-20656746 Msa0944130:intron 35.0%
GTGCTTGTTTGGATATATGT+TGG + chr6_3:20656937-20656956 Msa0944130:intron 35.0%
AAGAACATAACAGACCCAAA+AGG + chr6_3:20657151-20657170 Msa0944130:intron 35.0%
! TACTTGGTGATCGAATTTAC+CGG - chr6_3:20657246-20657265 None:intergenic 35.0%
! TTCGATCACCAAGTATTTTC+TGG + chr6_3:20657251-20657270 Msa0944130:intron 35.0%
GAATCATACCAACAAGTTGT+TGG - chr6_3:20657304-20657323 None:intergenic 35.0%
TGGCAATTGAAAATGTACAG+TGG - chr6_3:20657400-20657419 None:intergenic 35.0%
!! TATAGGTGCTCTAAGAAATC+GGG + chr6_3:20657564-20657583 Msa0944130:intron 35.0%
!! GGGAGGTTTTATACTATAGT+AGG + chr6_3:20657584-20657603 Msa0944130:intron 35.0%
!! TTGATAATGTCACCATCTCA+GGG - chr6_3:20657804-20657823 None:intergenic 35.0%
!! TTTGATAATGTCACCATCTC+AGG - chr6_3:20657805-20657824 None:intergenic 35.0%
GTTTGGGAAACAACTTATGA+CGG + chr6_3:20657885-20657904 Msa0944130:intron 35.0%
TTTGGGAAACAACTTATGAC+GGG + chr6_3:20657886-20657905 Msa0944130:intron 35.0%
!! ATAAGCGCTGATGTTATAAG+CGG + chr6_3:20658030-20658049 Msa0944130:intron 35.0%
TTAACATAGCAAACACTAGG+AGG - chr6_3:20658132-20658151 None:intergenic 35.0%
!! TCCTAGTGTTTGCTATGTTA+AGG + chr6_3:20658131-20658150 Msa0944130:intron 35.0%
ACCTTAACATAGCAAACACT+AGG - chr6_3:20658135-20658154 None:intergenic 35.0%
!! GTTTGCTATGTTAAGGTGAT+TGG + chr6_3:20658138-20658157 Msa0944130:intron 35.0%
! GTCTGCTCTTTTAGTAGTAA+GGG + chr6_3:20658342-20658361 Msa0944130:CDS 35.0%
CAAAAATAGGAAATGTTGCC+CGG + chr6_3:20658413-20658432 Msa0944130:CDS 35.0%
GCATGAATGATTTACAAACC+GGG - chr6_3:20658434-20658453 None:intergenic 35.0%
CGCATGAATGATTTACAAAC+CGG - chr6_3:20658435-20658454 None:intergenic 35.0%
!! GAAGAGCTTACTTTTAGCTA+TGG + chr6_3:20658547-20658566 Msa0944130:CDS 35.0%
!! CTTTTAGCTATGGAGAAATC+AGG + chr6_3:20658557-20658576 Msa0944130:CDS 35.0%
AAATCAGGAAAAGGTCCAAT+GGG + chr6_3:20658572-20658591 Msa0944130:CDS 35.0%
! AACTTTCAAGTGTCTTCTGA+GGG - chr6_3:20658640-20658659 None:intergenic 35.0%
!!! TTGGTTTTAACGAGATGATG+GGG + chr6_3:20658682-20658701 Msa0944130:three_prime_UTR 35.0%
!! AGTTGTGTGTGGGTTAGATA+TGG - chr6_3:20655668-20655687 None:intergenic 40.0%
TGGGATTGGATGATTCTCAA+AGG - chr6_3:20655774-20655793 None:intergenic 40.0%
! ATGGTGTTGAGAAATGGGAT+TGG - chr6_3:20655788-20655807 None:intergenic 40.0%
! GGAAGGTGTGTATAGAAAGT+AGG - chr6_3:20655834-20655853 None:intergenic 40.0%
!! TGTCATTTCAGATGATGGGT+CGG + chr6_3:20655913-20655932 Msa0944130:CDS 40.0%
!!! GGTGTTGGTTGTGATTTTGA+AGG + chr6_3:20655944-20655963 Msa0944130:CDS 40.0%
TGTTTGTGAAAATGGGTCAG+TGG + chr6_3:20655967-20655986 Msa0944130:CDS 40.0%
GTTTGTGAAAATGGGTCAGT+GGG + chr6_3:20655968-20655987 Msa0944130:CDS 40.0%
!!! AGTTTTGGTGTTGGATGTGA+AGG + chr6_3:20656055-20656074 Msa0944130:CDS 40.0%
! TTTGATGTCGGCTGTGAAAA+TGG + chr6_3:20656271-20656290 Msa0944130:CDS 40.0%
! TTGATGTCGGCTGTGAAAAT+GGG + chr6_3:20656272-20656291 Msa0944130:CDS 40.0%
GATGATGACTCAGTGAGATT+TGG + chr6_3:20656355-20656374 Msa0944130:CDS 40.0%
!! TTTGATGGGGTTGATGGTAT+TGG + chr6_3:20656427-20656446 Msa0944130:CDS 40.0%
! ATGGTATTGGAAGAGAGTGT+GGG + chr6_3:20656440-20656459 Msa0944130:CDS 40.0%
GGAATAGGGTGAGTCAAAAT+GGG + chr6_3:20656491-20656510 Msa0944130:CDS 40.0%
GAATAGGGTGAGTCAAAATG+GGG + chr6_3:20656492-20656511 Msa0944130:CDS 40.0%
AGGGTTAAGATTGTATGGTG+TGG + chr6_3:20656523-20656542 Msa0944130:CDS 40.0%
GTTAAGATTGTATGGTGTGG+TGG + chr6_3:20656526-20656545 Msa0944130:CDS 40.0%
! GAATCAGGTTGTTCGTAAAG+AGG + chr6_3:20656573-20656592 Msa0944130:CDS 40.0%
TCAAGGGAAGGTTGTCAAAA+TGG - chr6_3:20657420-20657439 None:intergenic 40.0%
! AGATGATGGTCTATAGGTCA+AGG + chr6_3:20657500-20657519 Msa0944130:intron 40.0%
! GATGATGGTCTATAGGTCAA+GGG + chr6_3:20657501-20657520 Msa0944130:intron 40.0%
!! GTTTTAGCAACCCACTTAGA+AGG + chr6_3:20657621-20657640 Msa0944130:intron 40.0%
GTACAGGCAGTTTACATCTA+CGG - chr6_3:20657695-20657714 None:intergenic 40.0%
! TGATAATGTCACCATCTCAG+GGG - chr6_3:20657803-20657822 None:intergenic 40.0%
AAGCACTTGTGAGACTGTTT+GGG + chr6_3:20657869-20657888 Msa0944130:intron 40.0%
! TGCGGTTTTCTGTGTGAAAA+AGG + chr6_3:20658244-20658263 Msa0944130:intron 40.0%
! CGTCTGCTCTTTTAGTAGTA+AGG + chr6_3:20658341-20658360 Msa0944130:CDS 40.0%
GTAAATCATTCATGCGATGG+TGG + chr6_3:20658439-20658458 Msa0944130:CDS 40.0%
CTTTCGAAGCAAAAAAGCAG+AGG - chr6_3:20658513-20658532 None:intergenic 40.0%
GCTATGGAGAAATCAGGAAA+AGG + chr6_3:20658563-20658582 Msa0944130:CDS 40.0%
GAAATCAGGAAAAGGTCCAA+TGG + chr6_3:20658571-20658590 Msa0944130:CDS 40.0%
! CAACTTTCAAGTGTCTTCTG+AGG - chr6_3:20658641-20658660 None:intergenic 40.0%
!!! TGGTTTTAACGAGATGATGG+GGG + chr6_3:20658683-20658702 Msa0944130:three_prime_UTR 40.0%
TTGCTGCTACTCGATTTCCT+GGG - chr6_3:20655575-20655594 None:intergenic 45.0%
ATTGCTGCTACTCGATTTCC+TGG - chr6_3:20655576-20655595 None:intergenic 45.0%
AGGAAATCGAGTAGCAGCAA+TGG + chr6_3:20655575-20655594 Msa0944130:CDS 45.0%
TTTGCAGGTTAGGGAGATGT+TGG - chr6_3:20655693-20655712 None:intergenic 45.0%
!! ACGGAGTGTTTTGCAGGTTA+GGG - chr6_3:20655702-20655721 None:intergenic 45.0%
!! TACGGAGTGTTTTGCAGGTT+AGG - chr6_3:20655703-20655722 None:intergenic 45.0%
!! GAGTTTACGGAGTGTTTTGC+AGG - chr6_3:20655708-20655727 None:intergenic 45.0%
! AGGAGGGTTGTTGTTGTTGA+TGG - chr6_3:20655807-20655826 None:intergenic 45.0%
TTGTGAGAGAGAATGAGGGA+AGG - chr6_3:20655851-20655870 None:intergenic 45.0%
! GGTGTTGTGAGAGAGAATGA+GGG - chr6_3:20655855-20655874 None:intergenic 45.0%
ACACCCCCAATTATCAACCA+TGG + chr6_3:20655870-20655889 Msa0944130:CDS 45.0%
CACCCCCAATTATCAACCAT+GGG + chr6_3:20655871-20655890 Msa0944130:CDS 45.0%
ACCCCCAATTATCAACCATG+GGG + chr6_3:20655872-20655891 Msa0944130:CDS 45.0%
!! ACCCCATGGTTGATAATTGG+GGG - chr6_3:20655876-20655895 None:intergenic 45.0%
!! CACCCCATGGTTGATAATTG+GGG - chr6_3:20655877-20655896 None:intergenic 45.0%
!! GCACCCCATGGTTGATAATT+GGG - chr6_3:20655878-20655897 None:intergenic 45.0%
!! AGCACCCCATGGTTGATAAT+TGG - chr6_3:20655879-20655898 None:intergenic 45.0%
AATTATCAACCATGGGGTGC+TGG + chr6_3:20655878-20655897 Msa0944130:CDS 45.0%
CTCACTGACCCATGAACATT+GGG - chr6_3:20656037-20656056 None:intergenic 45.0%
ACTCACTGACCCATGAACAT+TGG - chr6_3:20656038-20656057 None:intergenic 45.0%
! GTTCATGGGTCAGTGAGTTT+TGG + chr6_3:20656040-20656059 Msa0944130:CDS 45.0%
!! TGTGAAGGTGTCTGTGATGA+TGG + chr6_3:20656070-20656089 Msa0944130:CDS 45.0%
!! AAGGTGTCTGTGATGATGGT+GGG + chr6_3:20656074-20656093 Msa0944130:CDS 45.0%
CATCCAACACCAAACTTCAC+CGG - chr6_3:20656145-20656164 None:intergenic 45.0%
!! TGTATGTGATGATGGGTCTG+TGG + chr6_3:20656177-20656196 Msa0944130:CDS 45.0%
!! GTATGTGATGATGGGTCTGT+GGG + chr6_3:20656178-20656197 Msa0944130:CDS 45.0%
! TCATCATTGATCGCTCTAGG+CGG - chr6_3:20656238-20656257 None:intergenic 45.0%
CCTAGAGCGATCAATGATGA+GGG + chr6_3:20656238-20656257 Msa0944130:CDS 45.0%
AGCGATCAATGATGAGGGAT+CGG + chr6_3:20656243-20656262 Msa0944130:CDS 45.0%
GGATCGGTGAGATTTGATGT+CGG + chr6_3:20656259-20656278 Msa0944130:CDS 45.0%
TCATCATCGTCAACCGTTCT+AGG - chr6_3:20656343-20656362 None:intergenic 45.0%
!! TGACTCAGTGAGATTTGGTG+TGG + chr6_3:20656360-20656379 Msa0944130:CDS 45.0%
!! GACTCAGTGAGATTTGGTGT+GGG + chr6_3:20656361-20656380 Msa0944130:CDS 45.0%
! GATGGTATTGGAAGAGAGTG+TGG + chr6_3:20656439-20656458 Msa0944130:CDS 45.0%
GGGAATAGGGTGAGTCAAAA+TGG + chr6_3:20656490-20656509 Msa0944130:CDS 45.0%
AAGATTGTATGGTGTGGTGG+TGG + chr6_3:20656529-20656548 Msa0944130:CDS 45.0%
AGATTGTATGGTGTGGTGGT+GGG + chr6_3:20656530-20656549 Msa0944130:CDS 45.0%
! ATGGGGTTTGTTTGCGAATC+AGG + chr6_3:20656558-20656577 Msa0944130:CDS 45.0%
AGCTCTACCAAGTTCAATCC+AGG + chr6_3:20657200-20657219 Msa0944130:intron 45.0%
AGATGGACCTGGATTGAACT+TGG - chr6_3:20657210-20657229 None:intergenic 45.0%
AGTTCAATCCAGGTCCATCT+AGG + chr6_3:20657210-20657229 Msa0944130:intron 45.0%
GTTCAATCCAGGTCCATCTA+GGG + chr6_3:20657211-20657230 Msa0944130:intron 45.0%
TTCAATCCAGGTCCATCTAG+GGG + chr6_3:20657212-20657231 Msa0944130:intron 45.0%
CCAACAAGTTGTTGGCAACA+AGG - chr6_3:20657296-20657315 None:intergenic 45.0%
CCTTGTTGCCAACAACTTGT+TGG + chr6_3:20657293-20657312 Msa0944130:intron 45.0%
ATAGTAGGAACACGGGTCTT+TGG + chr6_3:20657599-20657618 Msa0944130:intron 45.0%
GTCTCACAAGTGCTTGTGTT+AGG - chr6_3:20657864-20657883 None:intergenic 45.0%
CAAGCACTTGTGAGACTGTT+TGG + chr6_3:20657868-20657887 Msa0944130:intron 45.0%
! AAGCTGTTTCGGAGAGCTTA+TGG - chr6_3:20657937-20657956 None:intergenic 45.0%
AGGTGAACTACTGACAACCA+CGG + chr6_3:20658264-20658283 Msa0944130:intron 45.0%
GTAAGGGAACATCTTCCATC+AGG + chr6_3:20658358-20658377 Msa0944130:CDS 45.0%
GGAACATCTTCCATCAGGAA+AGG + chr6_3:20658363-20658382 Msa0944130:CDS 45.0%
CTCAAACATGCCTTTCCTGA+TGG - chr6_3:20658376-20658395 None:intergenic 45.0%
TCGAAGCAAAAAAGCAGAGG+CGG - chr6_3:20658510-20658529 None:intergenic 45.0%
GCAATGTTCCAAGGCAAGAA+AGG - chr6_3:20658618-20658637 None:intergenic 45.0%
!!! GGTTTTAACGAGATGATGGG+GGG + chr6_3:20658684-20658703 Msa0944130:three_prime_UTR 45.0%
!!! CAATTTTATATTTAATTTTT+AGG + chr6_3:20657053-20657072 Msa0944130:intron 5.0%
GATGTTGGCGAGTTGTGTGT+GGG - chr6_3:20655678-20655697 None:intergenic 50.0%
AGATGTTGGCGAGTTGTGTG+TGG - chr6_3:20655679-20655698 None:intergenic 50.0%
! GGGTGTTGTGAGAGAGAATG+AGG - chr6_3:20655856-20655875 None:intergenic 50.0%
!! GATGATGGGTCGGTGAGATT+TGG + chr6_3:20655923-20655942 Msa0944130:CDS 50.0%
TGTGAAAATGGGTCAGTGGG+AGG + chr6_3:20655971-20655990 Msa0944130:CDS 50.0%
ACTGACCCATGAACATTGGG+CGG - chr6_3:20656034-20656053 None:intergenic 50.0%
!! GGGTCAGTGAGTTTTGGTGT+TGG + chr6_3:20656046-20656065 Msa0944130:CDS 50.0%
!! GAAGGTGTCTGTGATGATGG+TGG + chr6_3:20656073-20656092 Msa0944130:CDS 50.0%
!! AGGTGTCTGTGATGATGGTG+GGG + chr6_3:20656075-20656094 Msa0944130:CDS 50.0%
!! ATTCCGCCGGTTGATGAAGT+TGG + chr6_3:20656118-20656137 Msa0944130:CDS 50.0%
!! TTCCGCCGGTTGATGAAGTT+GGG + chr6_3:20656119-20656138 Msa0944130:CDS 50.0%
! TTGATCGCTCTAGGCGGAAT+TGG - chr6_3:20656232-20656251 None:intergenic 50.0%
GCCTAGAGCGATCAATGATG+AGG + chr6_3:20656237-20656256 Msa0944130:CDS 50.0%
CCCTCATCATTGATCGCTCT+AGG - chr6_3:20656241-20656260 None:intergenic 50.0%
! TGTCGGCTGTGAAAATGGGA+AGG + chr6_3:20656276-20656295 Msa0944130:CDS 50.0%
GGCTGTGAAAATGGGAAGGT+GGG + chr6_3:20656280-20656299 Msa0944130:CDS 50.0%
TGTGAAAATGGGAAGGTGGG+AGG + chr6_3:20656283-20656302 Msa0944130:CDS 50.0%
TTCACCAATGCCGCCTAGAA+CGG + chr6_3:20656327-20656346 Msa0944130:CDS 50.0%
! TCATCGTCAACCGTTCTAGG+CGG - chr6_3:20656340-20656359 None:intergenic 50.0%
! TATTGGAAGAGAGTGTGGGC+TGG + chr6_3:20656444-20656463 Msa0944130:CDS 50.0%
! ATTGGAAGAGAGTGTGGGCT+GGG + chr6_3:20656445-20656464 Msa0944130:CDS 50.0%
!! TGTGGGCTGGGTTGTTTATG+TGG + chr6_3:20656457-20656476 Msa0944130:CDS 50.0%
!! GTGGGCTGGGTTGTTTATGT+GGG + chr6_3:20656458-20656477 Msa0944130:CDS 50.0%
GCTGGGTTGTTTATGTGGGA+GGG + chr6_3:20656462-20656481 Msa0944130:CDS 50.0%
TGTTTATGTGGGAGGGAGTG+TGG + chr6_3:20656469-20656488 Msa0944130:CDS 50.0%
! GTTTATGTGGGAGGGAGTGT+GGG + chr6_3:20656470-20656489 Msa0944130:CDS 50.0%
GGTGATCGAATTTACCGGAC+TGG - chr6_3:20657241-20657260 None:intergenic 50.0%
!! AGGTGCTCTAAGAAATCGGG+AGG + chr6_3:20657567-20657586 Msa0944130:intron 50.0%
! TGATGACGATACCCCTGAGA+TGG + chr6_3:20657789-20657808 Msa0944130:intron 50.0%
TATGATGAACTGGCATCGCG+TGG + chr6_3:20658310-20658329 Msa0944130:CDS 50.0%
AAGCAAAAAAGCAGAGGCGG+GGG - chr6_3:20658507-20658526 None:intergenic 50.0%
GAAGCAAAAAAGCAGAGGCG+GGG - chr6_3:20658508-20658527 None:intergenic 50.0%
CGAAGCAAAAAAGCAGAGGC+GGG - chr6_3:20658509-20658528 None:intergenic 50.0%
TCAGGAAAAGGTCCAATGGG+CGG + chr6_3:20658575-20658594 Msa0944130:CDS 50.0%
GAAAGGCTGTTGCAGTGACA+CGG - chr6_3:20658601-20658620 None:intergenic 50.0%
TGCAACAGCCTTTCTTGCCT+TGG + chr6_3:20658607-20658626 Msa0944130:CDS 50.0%
! CTTCTGAGGGCAATGTTCCA+AGG - chr6_3:20658627-20658646 None:intergenic 50.0%
!! TTTAACGAGATGATGGGGGG+AGG + chr6_3:20658687-20658706 Msa0944130:three_prime_UTR 50.0%
!! TTAACGAGATGATGGGGGGA+GGG + chr6_3:20658688-20658707 Msa0944130:three_prime_UTR 50.0%
GCGACGGAGGGTGATGATTT+GGG - chr6_3:20655732-20655751 None:intergenic 55.0%
TGCGACGGAGGGTGATGATT+TGG - chr6_3:20655733-20655752 None:intergenic 55.0%
CTCAAAGGTTCGCGAAGCGT+CGG - chr6_3:20655759-20655778 None:intergenic 55.0%
!! GGGTCGGTGAGATTTGGTGT+TGG + chr6_3:20655929-20655948 Msa0944130:CDS 55.0%
GAAAATGGGTCAGTGGGAGG+TGG + chr6_3:20655974-20655993 Msa0944130:CDS 55.0%
CACCACCGCCCAATGTTCAT+GGG + chr6_3:20656026-20656045 Msa0944130:CDS 55.0%
!! GGTGTCTGTGATGATGGTGG+GGG + chr6_3:20656076-20656095 Msa0944130:CDS 55.0%
ACCGGCCCAACTTCATCAAC+CGG - chr6_3:20656127-20656146 None:intergenic 55.0%
GAAGTTGGGCCGGTGAAGTT+TGG + chr6_3:20656133-20656152 Msa0944130:CDS 55.0%
!! GATGATGGGTCTGTGGGAGA+TGG + chr6_3:20656184-20656203 Msa0944130:CDS 55.0%
ATGGGTCTGTGGGAGATGGT+GGG + chr6_3:20656188-20656207 Msa0944130:CDS 55.0%
CGGCTGTGAAAATGGGAAGG+TGG + chr6_3:20656279-20656298 Msa0944130:CDS 55.0%
! TCAACCGTTCTAGGCGGCAT+TGG - chr6_3:20656334-20656353 None:intergenic 55.0%
GGTGTGGGATGTGAGTGTGA+AGG + chr6_3:20656376-20656395 Msa0944130:CDS 55.0%
GGCTGGGTTGTTTATGTGGG+AGG + chr6_3:20656461-20656480 Msa0944130:CDS 55.0%
! TGGGAGGGAGTGTGGGAATA+GGG + chr6_3:20656477-20656496 Msa0944130:CDS 55.0%
!! GTATGGTGTGGTGGTGGGAA+AGG + chr6_3:20656535-20656554 Msa0944130:CDS 55.0%
!! GTGTGGTGGTGGGAAAGGAT+GGG + chr6_3:20656540-20656559 Msa0944130:CDS 55.0%
!! TGTGGTGGTGGGAAAGGATG+GGG + chr6_3:20656541-20656560 Msa0944130:CDS 55.0%
! TGACAACCACGGAAGCACAG+AGG + chr6_3:20658275-20658294 Msa0944130:CDS 55.0%
TTGTCTCCTCTGTGCTTCCG+TGG - chr6_3:20658284-20658303 None:intergenic 55.0%
!! TAACGAGATGATGGGGGGAG+GGG + chr6_3:20658689-20658708 Msa0944130:three_prime_UTR 55.0%
!! TCAACCATGGGGTGCTGGAG+AGG + chr6_3:20655883-20655902 Msa0944130:CDS 60.0%
!! CAACCATGGGGTGCTGGAGA+GGG + chr6_3:20655884-20655903 Msa0944130:CDS 60.0%
TTACCCTCTCCAGCACCCCA+TGG - chr6_3:20655890-20655909 None:intergenic 60.0%
AATGGGTCAGTGGGAGGTGG+TGG + chr6_3:20655977-20655996 Msa0944130:CDS 60.0%
ATGGGTCAGTGGGAGGTGGT+GGG + chr6_3:20655978-20655997 Msa0944130:CDS 60.0%
CCATGAACATTGGGCGGTGG+TGG - chr6_3:20656028-20656047 None:intergenic 60.0%
CCACCACCGCCCAATGTTCA+TGG + chr6_3:20656025-20656044 Msa0944130:CDS 60.0%
GACCCATGAACATTGGGCGG+TGG - chr6_3:20656031-20656050 None:intergenic 60.0%
GGCCCAACTTCATCAACCGG+CGG - chr6_3:20656124-20656143 None:intergenic 60.0%
!! GCCGGTTGATGAAGTTGGGC+CGG + chr6_3:20656123-20656142 Msa0944130:CDS 60.0%
!! GGGCCGGTGAAGTTTGGTGT+TGG + chr6_3:20656139-20656158 Msa0944130:CDS 60.0%
GATGGGTCTGTGGGAGATGG+TGG + chr6_3:20656187-20656206 Msa0944130:CDS 60.0%
TGGGTCTGTGGGAGATGGTG+GGG + chr6_3:20656189-20656208 Msa0944130:CDS 60.0%
AATGGGAAGGTGGGAGGCAG+TGG + chr6_3:20656289-20656308 Msa0944130:CDS 60.0%
! GTGGGAGGGAGTGTGGGAAT+AGG + chr6_3:20656476-20656495 Msa0944130:CDS 60.0%
!! GGTGTGGTGGTGGGAAAGGA+TGG + chr6_3:20656539-20656558 Msa0944130:CDS 60.0%
TGGCTTCCCCTAGATGGACC+TGG - chr6_3:20657221-20657240 None:intergenic 60.0%
CCATCTAGGGGAAGCCAGTC+CGG + chr6_3:20657224-20657243 Msa0944130:intron 60.0%
!! AACGAGATGATGGGGGGAGG+GGG + chr6_3:20658690-20658709 Msa0944130:three_prime_UTR 60.0%
! AGCGTCGGAGATGCGACGGA+GGG - chr6_3:20655744-20655763 None:intergenic 65.0%
!! AAGCGTCGGAGATGCGACGG+AGG - chr6_3:20655745-20655764 None:intergenic 65.0%
!! GCGAAGCGTCGGAGATGCGA+CGG - chr6_3:20655748-20655767 None:intergenic 65.0%
TGGGTCAGTGGGAGGTGGTG+GGG + chr6_3:20655979-20655998 Msa0944130:CDS 65.0%
! GGGTCTGTGGGAGATGGTGG+GGG + chr6_3:20656190-20656209 Msa0944130:CDS 65.0%
!! CCGGACTGGCTTCCCCTAGA+TGG - chr6_3:20657227-20657246 None:intergenic 65.0%
! GGGTCAGTGGGAGGTGGTGG+GGG + chr6_3:20655980-20655999 Msa0944130:CDS 70.0%
GGGAAGGTGGGAGGCAGTGG+TGG + chr6_3:20656292-20656311 Msa0944130:CDS 70.0%
GCAGTGACACGGCCGCCCAT+TGG - chr6_3:20658590-20658609 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 20655563 20658721 20655563 ID=Msa0944130;Name=Msa0944130
chr6_3 mRNA 20655563 20658721 20655563 ID=Msa0944130-mRNA-1;Parent=Msa0944130;Name=Msa0944130-mRNA-1;_AED=0.00;_eAED=0.08;_QI=0|1|0.5|1|1|1|2|67|480
chr6_3 exon 20655563 20656616 20655563 ID=Msa0944130-mRNA-1:exon:6150;Parent=Msa0944130-mRNA-1
chr6_3 exon 20658266 20658721 20658266 ID=Msa0944130-mRNA-1:exon:6151;Parent=Msa0944130-mRNA-1
chr6_3 CDS 20655563 20656616 20655563 ID=Msa0944130-mRNA-1:cds;Parent=Msa0944130-mRNA-1
chr6_3 CDS 20658266 20658654 20658266 ID=Msa0944130-mRNA-1:cds;Parent=Msa0944130-mRNA-1
chr6_3 three_prime_UTR 20658655 20658721 20658655 ID=Msa0944130-mRNA-1:three_prime_utr;Parent=Msa0944130-mRNA-1
Gene Sequence

>Msa0944130

ATGAAGATACCCAGGAAATCGAGTAGCAGCAATGGTGATTCAAACTCTTCATCATCATCATCATCATCATCGTTTCTTGTTCAACACGCAACCCTAATTCTACCATATCTAACCCACACACAACTCGCCAACATCTCCCTAACCTGCAAAACACTCCGTAAACTCACCCAAATCATCACCCTCCGTCGCATCTCCGACGCTTCGCGAACCTTTGAGAATCATCCAATCCCATTTCTCAACACCATCAACAACAACAACCCTCCTTACTCCTACTTTCTATACACACCTTCCCTCATTCTCTCTCACAACACCCCCAATTATCAACCATGGGGTGCTGGAGAGGGTAATTCTGTCATTTCAGATGATGGGTCGGTGAGATTTGGTGTTGGTTGTGATTTTGAAGGTGTTTGTGAAAATGGGTCAGTGGGAGGTGGTGGGGGTAGTTCTGTCATTTCACTACTACCACCACCGCCCAATGTTCATGGGTCAGTGAGTTTTGGTGTTGGATGTGAAGGTGTCTGTGATGATGGTGGGGGTAAATCAGTAATTTCACTAATTCCGCCGGTTGATGAAGTTGGGCCGGTGAAGTTTGGTGTTGGATGTAATTTTCAAGGTGTATGTGATGATGGGTCTGTGGGAGATGGTGGGGGTAGTTCAGTAATTTCACCAATTCCGCCTAGAGCGATCAATGATGAGGGATCGGTGAGATTTGATGTCGGCTGTGAAAATGGGAAGGTGGGAGGCAGTGGTGGTAGTTCAGTTATTTCACCAATGCCGCCTAGAACGGTTGACGATGATGACTCAGTGAGATTTGGTGTGGGATGTGAGTGTGAAGGTGCTTGTGATGATGAGTGTATGTGTTTTTTTGATGGGGTTGATGGTATTGGAAGAGAGTGTGGGCTGGGTTGTTTATGTGGGAGGGAGTGTGGGAATAGGGTGAGTCAAAATGGGGTTAATGTTAGGGTTAAGATTGTATGGTGTGGTGGTGGGAAAGGATGGGGTTTGTTTGCGAATCAGGTTGTTCGTAAAGAGGAGTTCTTGTTTCAATATGCAGGTGAACTACTGACAACCACGGAAGCACAGAGGAGACAACAACATTATGATGAACTGGCATCGCGTGGTCGTTTCTCGTCTGCTCTTTTAGTAGTAAGGGAACATCTTCCATCAGGAAAGGCATGTTTGAGATTGAACATAGACGCAACAAAAATAGGAAATGTTGCCCGGTTTGTAAATCATTCATGCGATGGTGGTAATTTAAGCACAAAGCTAGTCAGAAGTACAAGAGCTTTGTTCCCCCGCCTCTGCTTTTTTGCTTCGAAAGATATCCAAAAAGATGAAGAGCTTACTTTTAGCTATGGAGAAATCAGGAAAAGGTCCAATGGGCGGCCGTGTCACTGCAACAGCCTTTCTTGCCTTGGAACATTGCCCTCAGAAGACACTTGA
Protein sequence

>Msa0944130

MKIPRKSSSSNGDSNSSSSSSSSSFLVQHATLILPYLTHTQLANISLTCKTLRKLTQIITLRRISDASRTFENHPIPFLNTINNNNPPYSYFLYTPSLILSHNTPNYQPWGAGEGNSVISDDGSVRFGVGCDFEGVCENGSVGGGGGSSVISLLPPPPNVHGSVSFGVGCEGVCDDGGGKSVISLIPPVDEVGPVKFGVGCNFQGVCDDGSVGDGGGSSVISPIPPRAINDEGSVRFDVGCENGKVGGSGGSSVISPMPPRTVDDDDSVRFGVGCECEGACDDECMCFFDGVDGIGRECGLGCLCGRECGNRVSQNGVNVRVKIVWCGGGKGWGLFANQVVRKEEFLFQYAGELLTTTEAQRRQQHYDELASRGRFSSALLVVREHLPSGKACLRLNIDATKIGNVARFVNHSCDGGNLSTKLVRSTRALFPRLCFFASKDIQKDEELTFSYGEIRKRSNGRPCHCNSLSCLGTLPSEDT*