Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0945280 | RHN51853.1 | 32.184 | 174 | 69 | 2 | 9 | 182 | 9 | 133 | 3.69e-16 | 93.2 |
| Msa0945280 | RHN51853.1 | 37.423 | 163 | 89 | 1 | 34 | 183 | 222 | 384 | 4.65e-20 | 105 |
| Msa0945280 | RHN51853.1 | 43.682 | 277 | 142 | 2 | 203 | 466 | 225 | 500 | 1.27e-74 | 253 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0945280 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0945280 | MtrunA17_Chr6g0473661 | 43.682 | 277 | 142 | 2 | 203 | 466 | 225 | 500 | 1.17e-78 | 253 |
| Msa0945280 | MtrunA17_Chr6g0473661 | 37.423 | 163 | 89 | 1 | 34 | 183 | 222 | 384 | 4.27e-24 | 105 |
| Msa0945280 | MtrunA17_Chr6g0473661 | 32.184 | 174 | 69 | 2 | 9 | 182 | 9 | 133 | 3.40e-20 | 93.2 |
| Msa0945280 | MtrunA17_Chr6g0473651 | 49.640 | 139 | 69 | 1 | 212 | 350 | 216 | 353 | 1.47e-36 | 139 |
| Msa0945280 | MtrunA17_Chr6g0473651 | 44.531 | 128 | 71 | 0 | 56 | 183 | 226 | 353 | 2.04e-24 | 104 |
| Msa0945280 | MtrunA17_Chr6g0473651 | 31.214 | 173 | 108 | 3 | 279 | 443 | 23 | 192 | 3.18e-23 | 101 |
| Msa0945280 | MtrunA17_Chr6g0473651 | 47.887 | 71 | 37 | 0 | 112 | 182 | 22 | 92 | 8.05e-13 | 70.1 |
| Msa0945280 | MtrunA17_Chr6g0473921 | 36.957 | 138 | 87 | 0 | 328 | 465 | 1 | 138 | 8.28e-32 | 119 |
| Msa0945280 | MtrunA17_Chr1g0156191 | 37.500 | 136 | 84 | 1 | 294 | 429 | 1 | 135 | 1.55e-27 | 107 |
| Msa0945280 | MtrunA17_Chr1g0206471 | 29.767 | 215 | 139 | 2 | 207 | 410 | 38 | 251 | 1.38e-26 | 108 |
| Msa0945280 | MtrunA17_Chr1g0206471 | 29.139 | 151 | 95 | 1 | 43 | 181 | 40 | 190 | 1.33e-17 | 82.8 |
| Msa0945280 | MtrunA17_Chr7g0270401 | 27.711 | 249 | 163 | 5 | 195 | 429 | 24 | 269 | 2.77e-24 | 102 |
| Msa0945280 | MtrunA17_Chr7g0270401 | 27.273 | 154 | 100 | 1 | 43 | 184 | 39 | 192 | 2.60e-16 | 79.0 |
| Msa0945280 | MtrunA17_Chr6g0462511 | 35.398 | 113 | 72 | 1 | 319 | 430 | 2 | 114 | 1.68e-20 | 87.0 |
| Msa0945280 | MtrunA17_Chr1g0193281 | 31.298 | 131 | 90 | 0 | 43 | 173 | 39 | 169 | 6.62e-16 | 76.3 |
| Msa0945280 | MtrunA17_Chr1g0193281 | 31.250 | 128 | 83 | 2 | 187 | 310 | 14 | 140 | 4.84e-11 | 62.0 |
| Msa0945280 | MtrunA17_Chr1g0207921 | 40.000 | 80 | 46 | 1 | 43 | 120 | 36 | 115 | 8.22e-13 | 67.4 |
| Msa0945280 | MtrunA17_Chr4g0054601 | 41.892 | 74 | 43 | 0 | 234 | 307 | 1 | 74 | 3.44e-12 | 63.2 |
| Msa0945280 | MtrunA17_Chr7g0228461 | 31.667 | 120 | 78 | 2 | 58 | 176 | 2 | 118 | 2.71e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 117 sgRNAs with CRISPR-Local
Find 251 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTCTGTGGCAAGGATTTC+TGG | 0.139608 | 6_3:-24021070 | None:intergenic |
| AAACTGGACCGTCGTGATTT+TGG | 0.142859 | 6_3:+24019370 | Msa0945280:CDS |
| CAATCCAGCCTTGTTTCTTA+TGG | 0.243933 | 6_3:-24020787 | None:intergenic |
| CGGTCCAGTTTGGATATTAT+TGG | 0.264347 | 6_3:-24019358 | None:intergenic |
| ATCCATGGGTGCAGTGTATT+GGG | 0.290852 | 6_3:-24021295 | None:intergenic |
| CTCATCATTGCCATCTCACT+TGG | 0.320277 | 6_3:-24018924 | None:intergenic |
| CCGAGGTTCATTACTTCATC+AGG | 0.337428 | 6_3:+24020849 | Msa0945280:CDS |
| GATATATCGGATAATGGATA+TGG | 0.364913 | 6_3:-24020816 | None:intergenic |
| CCTACCACACTTACGATTGT+TGG | 0.366401 | 6_3:+24021092 | Msa0945280:CDS |
| ACCTCTGCGATGTGCAAATC+AGG | 0.368835 | 6_3:-24021199 | None:intergenic |
| ATCGTCAAGGTCATAAGATT+TGG | 0.374229 | 6_3:-24019289 | None:intergenic |
| ACATCGCAGAGGTTGGTTGC+AGG | 0.375369 | 6_3:+24021209 | Msa0945280:CDS |
| ACAACAATGATATTGTTGTT+TGG | 0.386359 | 6_3:-24020636 | None:intergenic |
| ACCTCAATCTCATTGTTCAT+TGG | 0.386489 | 6_3:-24019157 | None:intergenic |
| GATATTTATAACATTGTAGA+TGG | 0.391221 | 6_3:+24020717 | Msa0945280:CDS |
| GACTTCGTCTGATGTCCTCT+CGG | 0.399084 | 6_3:+24020917 | Msa0945280:CDS |
| TATCCATGGGTGCAGTGTAT+TGG | 0.399336 | 6_3:-24021296 | None:intergenic |
| ACTTCAGACAAGGCTGGTCT+AGG | 0.399428 | 6_3:+24020688 | Msa0945280:CDS |
| GCAAGGGATATATCGGATAA+TGG | 0.403725 | 6_3:-24020822 | None:intergenic |
| AAAATCACGACGGTCCAGTT+TGG | 0.405460 | 6_3:-24019368 | None:intergenic |
| ATGCTATGATTGGTGGTGAT+TGG | 0.409098 | 6_3:+24021174 | Msa0945280:CDS |
| TACTCCAATAATATCCAAAC+TGG | 0.412151 | 6_3:+24019354 | Msa0945280:CDS |
| GGATGTTAACTCAGGATGTT+TGG | 0.412783 | 6_3:+24019444 | Msa0945280:CDS |
| CATAAGAAACAAGGCTGGAT+TGG | 0.419848 | 6_3:+24020788 | Msa0945280:CDS |
| AACCAGACTTTGCCGTGGTA+TGG | 0.440028 | 6_3:+24021041 | Msa0945280:intron |
| CACTATTGAATTGACTTACT+CGG | 0.440432 | 6_3:+24019423 | Msa0945280:CDS |
| AAACCTATGGTCAGCGGCAG+TGG | 0.455398 | 6_3:+24021326 | Msa0945280:CDS |
| CGGCAACGCAAGGGATATAT+CGG | 0.461190 | 6_3:-24020829 | None:intergenic |
| CAGACATAGTGTCAAATTCA+AGG | 0.463743 | 6_3:-24018956 | None:intergenic |
| GACAAAGATAACACAGTCCT+TGG | 0.465488 | 6_3:+24021260 | Msa0945280:CDS |
| TCATCATTGCCATCTCACTT+GGG | 0.476104 | 6_3:-24018923 | None:intergenic |
| CTGTGCGAAGGGACCTGTCT+CGG | 0.479542 | 6_3:+24020031 | Msa0945280:CDS |
| TAGGTTTCACATAGTATCCA+TGG | 0.490660 | 6_3:-24021310 | None:intergenic |
| ATGGTCATGAGTAGTAGATT+AGG | 0.500878 | 6_3:-24020768 | None:intergenic |
| TGGGTCTATCTGAAATATGC+GGG | 0.502250 | 6_3:+24020744 | Msa0945280:CDS |
| TTGGTCCGAACGGCTGTACA+TGG | 0.502745 | 6_3:+24021111 | Msa0945280:CDS |
| CATCTCACCATGTCTGACTT+AGG | 0.502842 | 6_3:+24018046 | None:intergenic |
| GAAGGGACCTGTCTCGGTTG+AGG | 0.505460 | 6_3:+24020037 | Msa0945280:CDS |
| GACTTCTACAACATTGAGCT+TGG | 0.507615 | 6_3:+24019238 | Msa0945280:CDS |
| TCACCACCAATCATAGCATA+AGG | 0.511917 | 6_3:-24021170 | None:intergenic |
| ACTTCGTCTGATGTCCTCTC+GGG | 0.511997 | 6_3:+24020918 | Msa0945280:CDS |
| CATCTCCATGTACAGCCGTT+CGG | 0.512529 | 6_3:-24021116 | None:intergenic |
| GAGTATGCTGGAACAGATGT+CGG | 0.514049 | 6_3:+24021397 | Msa0945280:CDS |
| AATATGCCTTATGCTATGAT+TGG | 0.515256 | 6_3:+24021164 | Msa0945280:CDS |
| TCCAATGAACAATGAGATTG+AGG | 0.518221 | 6_3:+24019156 | Msa0945280:CDS |
| AGCTTTATATGAGGAAAGGT+TGG | 0.518511 | 6_3:+24019203 | Msa0945280:CDS |
| GATAAGTCCTCAACCGAGAC+AGG | 0.525131 | 6_3:-24020044 | None:intergenic |
| CGACCACTGCCGCTGACCAT+AGG | 0.527761 | 6_3:-24021329 | None:intergenic |
| ACCCCAATACACTGCACCCA+TGG | 0.533195 | 6_3:+24021293 | Msa0945280:CDS |
| TGCACAAGGAATGCTGTCAT+TGG | 0.536531 | 6_3:+24018102 | Msa0945280:CDS |
| CAGTGGTCGATATGTGTACC+AGG | 0.539166 | 6_3:+24021343 | Msa0945280:CDS |
| ATTATTGGAGTAGTGTGAGC+AGG | 0.541688 | 6_3:-24019343 | None:intergenic |
| TAATGAACCTCGGCAACGCA+AGG | 0.541750 | 6_3:-24020839 | None:intergenic |
| TGATGTCCTCTCGGGCACTT+TGG | 0.543138 | 6_3:+24020926 | Msa0945280:CDS |
| TTGCAAGGCGAAGAGTATGC+TGG | 0.545573 | 6_3:+24021385 | Msa0945280:CDS |
| ATAACATTGTAGATGGTGCA+TGG | 0.547247 | 6_3:+24020724 | Msa0945280:CDS |
| CGAGGTTCATTACTTCATCA+GGG | 0.547766 | 6_3:+24020850 | Msa0945280:CDS |
| TCACCATGTCTGACTTAGGT+GGG | 0.551890 | 6_3:+24018050 | None:intergenic |
| CATATTATTTGCAACAGCGA+AGG | 0.553325 | 6_3:-24021147 | None:intergenic |
| CTTCAGACAAGGCTGGTCTA+GGG | 0.553757 | 6_3:+24020689 | Msa0945280:CDS |
| CAAGGAATGCTGTCATTGGC+AGG | 0.555729 | 6_3:+24018106 | Msa0945280:CDS |
| AGTATGCTGGAACAGATGTC+GGG | 0.557360 | 6_3:+24021398 | Msa0945280:CDS |
| CTTACGATTGTTGGTCCGAA+CGG | 0.558198 | 6_3:+24021101 | Msa0945280:CDS |
| TATATGAGGAAAGGTTGGTA+TGG | 0.559929 | 6_3:+24019208 | Msa0945280:CDS |
| GATTTGCACATCGCAGAGGT+TGG | 0.560790 | 6_3:+24021202 | Msa0945280:CDS |
| GGACTGTGTTATCTTTGTCA+TGG | 0.561082 | 6_3:-24021256 | None:intergenic |
| TGGATACTATGTGAAACCTA+TGG | 0.563204 | 6_3:+24021313 | Msa0945280:CDS |
| TGCAGTGTATTGGGGTATGT+CGG | 0.565836 | 6_3:-24021286 | None:intergenic |
| ATATATCCCTTGCGTTGCCG+AGG | 0.568869 | 6_3:+24020832 | Msa0945280:CDS |
| TGTGGTAGGTTTCTGTGGCA+AGG | 0.569531 | 6_3:-24021078 | None:intergenic |
| GACAAGCTTTATATGAGGAA+AGG | 0.570103 | 6_3:+24019199 | Msa0945280:CDS |
| ATCTCACTTGGGGTATACGT+TGG | 0.570410 | 6_3:-24018912 | None:intergenic |
| TAACATTGTAGATGGTGCAT+GGG | 0.570614 | 6_3:+24020725 | Msa0945280:CDS |
| CTCACCATGTCTGACTTAGG+TGG | 0.572352 | 6_3:+24018049 | None:intergenic |
| ACTTACTCGGATGTTAACTC+AGG | 0.572912 | 6_3:+24019436 | Msa0945280:CDS |
| GAAAGGTTGGTATGGACTGA+AGG | 0.575278 | 6_3:+24019216 | Msa0945280:CDS |
| GAGGCGACAAGCTTTATATG+AGG | 0.576586 | 6_3:+24019194 | Msa0945280:CDS |
| ACAAGGCTGGTCTAGGGTGA+AGG | 0.576887 | 6_3:+24020695 | Msa0945280:CDS |
| CATCATTGCCATCTCACTTG+GGG | 0.579124 | 6_3:-24018922 | None:intergenic |
| AACGTATACCCCAAGTGAGA+TGG | 0.579805 | 6_3:+24018914 | Msa0945280:CDS |
| AAATCTGTTGTTGATCGTCA+AGG | 0.579813 | 6_3:-24019302 | None:intergenic |
| ACAACATTGAGCTTGGTGCA+TGG | 0.580204 | 6_3:+24019245 | Msa0945280:CDS |
| CCAACAATCGTAAGTGTGGT+AGG | 0.580385 | 6_3:-24021092 | None:intergenic |
| CGAGACAGGTCCCTTCGCAC+AGG | 0.583465 | 6_3:-24020030 | None:intergenic |
| AGGTCTACTTCAGACAAGGC+TGG | 0.585540 | 6_3:+24020682 | Msa0945280:CDS |
| TCACTATCTCAAATATTGCA+AGG | 0.596203 | 6_3:+24021370 | Msa0945280:CDS |
| ATGACCATAAGAAACAAGGC+TGG | 0.597597 | 6_3:+24020783 | Msa0945280:CDS |
| CGACCTCGATCCTGTGCGAA+GGG | 0.601460 | 6_3:+24020020 | Msa0945280:CDS |
| ATGCCTTATGCTATGATTGG+TGG | 0.601798 | 6_3:+24021167 | Msa0945280:CDS |
| TTGGGGTATGTCGGAAACCA+AGG | 0.606539 | 6_3:-24021277 | None:intergenic |
| AATGAACCTCGGCAACGCAA+GGG | 0.607154 | 6_3:-24020838 | None:intergenic |
| AACGCTTTGGATGCTGCACA+AGG | 0.608033 | 6_3:+24018088 | Msa0945280:CDS |
| GTAAGTGTGGTAGGTTTCTG+TGG | 0.617237 | 6_3:-24021083 | None:intergenic |
| AGGTTTCACATAGTATCCAT+GGG | 0.622147 | 6_3:-24021309 | None:intergenic |
| CAACAGCGAACTTAACTGCA+TGG | 0.624703 | 6_3:-24021232 | None:intergenic |
| TCCATGGGTGCAGTGTATTG+GGG | 0.627336 | 6_3:-24021294 | None:intergenic |
| ACCTGATTTGCACATCGCAG+AGG | 0.634639 | 6_3:+24021198 | Msa0945280:CDS |
| AGGATGTTTGGTATTCACTG+TGG | 0.635952 | 6_3:+24019456 | Msa0945280:CDS |
| ATGGGTCTATCTGAAATATG+CGG | 0.636801 | 6_3:+24020743 | Msa0945280:CDS |
| ACGACCTCGATCCTGTGCGA+AGG | 0.639634 | 6_3:+24020019 | Msa0945280:CDS |
| GGTCCCTTCGCACAGGATCG+AGG | 0.647508 | 6_3:-24020023 | None:intergenic |
| TTCTGGCAGAAGCCATACCA+CGG | 0.648051 | 6_3:-24021053 | None:intergenic |
| GGCAAGGTCTACTTCAGACA+AGG | 0.649008 | 6_3:+24020678 | Msa0945280:CDS |
| CCTGATGAAGTAATGAACCT+CGG | 0.649312 | 6_3:-24020849 | None:intergenic |
| TTATTTAGCAGTTAAAGGCG+AGG | 0.655685 | 6_3:+24020550 | Msa0945280:intron |
| GAGGTTCATTACTTCATCAG+GGG | 0.659487 | 6_3:+24020851 | Msa0945280:CDS |
| CAAGTGAGATGGCAATGATG+AGG | 0.660753 | 6_3:+24018925 | Msa0945280:CDS |
| ACTCATGACCATAAGAAACA+AGG | 0.663177 | 6_3:+24020779 | Msa0945280:CDS |
| TCAAAATCTTGACAGATGTG+CGG | 0.663839 | 6_3:-24020896 | None:intergenic |
| CGGACCAACAATCGTAAGTG+TGG | 0.667344 | 6_3:-24021096 | None:intergenic |
| ATTTGAGATAGTGATTGACC+TGG | 0.673697 | 6_3:-24021361 | None:intergenic |
| GGGTCTATCTGAAATATGCG+GGG | 0.673953 | 6_3:+24020745 | Msa0945280:CDS |
| TATATACCAAAGTGCCCGAG+AGG | 0.678235 | 6_3:-24020932 | None:intergenic |
| TGTTTAACCAGACTTTGCCG+TGG | 0.679547 | 6_3:+24021036 | Msa0945280:intron |
| AAACCCACCTAAGTCAGACA+TGG | 0.685362 | 6_3:-24018053 | None:intergenic |
| TATGTGAAACCTATGGTCAG+CGG | 0.713139 | 6_3:+24021320 | Msa0945280:CDS |
| GAGGTTCGACTGTATCGCAG+AGG | 0.730544 | 6_3:+24019175 | Msa0945280:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGCATAATATAAAATATAAA+TGG | + | chr6_3:24018661-24018680 | Msa0945280:intron | 10.0% |
| !!! | TTATTTTGATTTTTAATGCA+TGG | + | chr6_3:24018338-24018357 | Msa0945280:intron | 15.0% |
| !! | AAAAGATTGAAAAAAACATT+TGG | - | chr6_3:24018730-24018749 | None:intergenic | 15.0% |
| !! | AAAAAACCATATAAATTCAT+TGG | - | chr6_3:24019983-24020002 | None:intergenic | 15.0% |
| !! | TACATTCTAATTTGAATATA+TGG | + | chr6_3:24020223-24020242 | Msa0945280:intron | 15.0% |
| !!! | TATGTTAACATTTTCTATTA+TGG | + | chr6_3:24020498-24020517 | Msa0945280:intron | 15.0% |
| !! | GGTTAATATAATTAGATATT+TGG | + | chr6_3:24020968-24020987 | Msa0945280:intron | 15.0% |
| !! | TTATGAGGAAAAAAAATCTA+TGG | + | chr6_3:24018187-24018206 | Msa0945280:intron | 20.0% |
| !! | GTATCTTAAGAATACAAAAT+TGG | - | chr6_3:24018442-24018461 | None:intergenic | 20.0% |
| !! | TACATGTTTACTCTTTATTA+TGG | + | chr6_3:24018459-24018478 | Msa0945280:intron | 20.0% |
| !!! | TTTAGGACAAAAAATATCTA+GGG | + | chr6_3:24018485-24018504 | Msa0945280:intron | 20.0% |
| !! | AGAAATAAACAATAACACAA+CGG | - | chr6_3:24019496-24019515 | None:intergenic | 20.0% |
| !!! | AACTAACGTACAAATTTTTT+CGG | - | chr6_3:24020388-24020407 | None:intergenic | 20.0% |
| !! | ATGTTAACATAAATTTATGC+CGG | - | chr6_3:24020489-24020508 | None:intergenic | 20.0% |
| !! | GATATTTATAACATTGTAGA+TGG | + | chr6_3:24020717-24020736 | Msa0945280:CDS | 20.0% |
| ! | AACATATTGTTAACATGCTA+AGG | - | chr6_3:24018279-24018298 | None:intergenic | 25.0% |
| ! | AAATAATGATATGCAACACA+GGG | - | chr6_3:24018324-24018343 | None:intergenic | 25.0% |
| ! | AAAATAATGATATGCAACAC+AGG | - | chr6_3:24018325-24018344 | None:intergenic | 25.0% |
| !!! | CTAGATATTTTTTGTCCTAA+AGG | - | chr6_3:24018486-24018505 | None:intergenic | 25.0% |
| !!! | CTTTAGGACAAAAAATATCT+AGG | + | chr6_3:24018484-24018503 | Msa0945280:intron | 25.0% |
| !!! | AACTTGTTATAAACATGCAA+AGG | - | chr6_3:24018698-24018717 | None:intergenic | 25.0% |
| ! | TTAGCATCAAACACATTTAT+TGG | - | chr6_3:24019041-24019060 | None:intergenic | 25.0% |
| ! | TTTCTGTTTGTGTTTAGTAA+CGG | + | chr6_3:24019525-24019544 | Msa0945280:intron | 25.0% |
| !! | TATATGTTGTTTATTCTGTC+CGG | + | chr6_3:24019937-24019956 | Msa0945280:intron | 25.0% |
| !! | AAATTTTCACGACAACAATA+AGG | + | chr6_3:24020196-24020215 | Msa0945280:intron | 25.0% |
| ! | GTTTCCTATCTAATATCATA+AGG | + | chr6_3:24020520-24020539 | Msa0945280:intron | 25.0% |
| !! | ACAACAATGATATTGTTGTT+TGG | - | chr6_3:24020639-24020658 | None:intergenic | 25.0% |
| !! | GGTATATAATTTGCACTAAT+TGG | + | chr6_3:24020947-24020966 | Msa0945280:intron | 25.0% |
| ! | ATTTCGTTCATTCGATTATA+AGG | + | chr6_3:24020993-24021012 | Msa0945280:intron | 25.0% |
| ACTCTTTATTATGGTCCTTT+AGG | + | chr6_3:24018468-24018487 | Msa0945280:intron | 30.0% | |
| ATCAAACATAACGATATCAG+AGG | - | chr6_3:24018635-24018654 | None:intergenic | 30.0% | |
| ! | CAATATTAGGAGGCATAAAA+GGG | - | chr6_3:24018797-24018816 | None:intergenic | 30.0% |
| ! | ACAATATTAGGAGGCATAAA+AGG | - | chr6_3:24018798-24018817 | None:intergenic | 30.0% |
| TATGTCCTCATCTATTAGAA+TGG | - | chr6_3:24019011-24019030 | None:intergenic | 30.0% | |
| ! | TGTTAATTTTCGTAGGGAAT+GGG | + | chr6_3:24019067-24019086 | Msa0945280:intron | 30.0% |
| TAGTCTTTCAAAAAGCAGTT+AGG | - | chr6_3:24019100-24019119 | None:intergenic | 30.0% | |
| !!! | AACTGCTTTTTGAAAGACTA+TGG | + | chr6_3:24019100-24019119 | Msa0945280:CDS | 30.0% |
| TACTCCAATAATATCCAAAC+TGG | + | chr6_3:24019354-24019373 | Msa0945280:CDS | 30.0% | |
| ! | CACTATTGAATTGACTTACT+CGG | + | chr6_3:24019423-24019442 | Msa0945280:CDS | 30.0% |
| ATCAAATCTGCATTTGTAGA+CGG | - | chr6_3:24019830-24019849 | None:intergenic | 30.0% | |
| ACAAATGCAGATTTGATTAG+AGG | + | chr6_3:24019833-24019852 | Msa0945280:intron | 30.0% | |
| ACAACATATACTTCAGTTCA+GGG | - | chr6_3:24019927-24019946 | None:intergenic | 30.0% | |
| AACAACATATACTTCAGTTC+AGG | - | chr6_3:24019928-24019947 | None:intergenic | 30.0% | |
| ACGAATAACAATCAAATTGC+CGG | - | chr6_3:24019959-24019978 | None:intergenic | 30.0% | |
| TTCGTGCCAATGAATTTATA+TGG | + | chr6_3:24019974-24019993 | Msa0945280:intron | 30.0% | |
| ! | AACAAAACTTGGTGGTTAAA+AGG | - | chr6_3:24020151-24020170 | None:intergenic | 30.0% |
| TCTATTACTCTCTACAAATC+CGG | - | chr6_3:24020281-24020300 | None:intergenic | 30.0% | |
| AGTTATCATAAACTCTGTCT+AGG | + | chr6_3:24020345-24020364 | Msa0945280:intron | 30.0% | |
| !!! | ATTTGTACGTTAGTTTTGTG+CGG | + | chr6_3:24020393-24020412 | Msa0945280:intron | 30.0% |
| CAGATATACTTTCTTATGTC+CGG | + | chr6_3:24020467-24020486 | Msa0945280:intron | 30.0% | |
| CACACCTTATGATATTAGAT+AGG | - | chr6_3:24020527-24020546 | None:intergenic | 30.0% | |
| ! | TGTCCTTATTTAGCAGTTAA+AGG | + | chr6_3:24020545-24020564 | Msa0945280:intron | 30.0% |
| ! | ACTTCTTTTGCAAAACATGA+AGG | - | chr6_3:24020579-24020598 | None:intergenic | 30.0% |
| ! | TCATGTTTTGCAAAAGAAGT+AGG | + | chr6_3:24020579-24020598 | Msa0945280:CDS | 30.0% |
| GTTGAAGTTCAGAAAAAGAA+TGG | + | chr6_3:24020657-24020676 | Msa0945280:CDS | 30.0% | |
| !! | GATATATCGGATAATGGATA+TGG | - | chr6_3:24020819-24020838 | None:intergenic | 30.0% |
| AAGGTTATCTTACTGTTTGT+TGG | + | chr6_3:24021012-24021031 | Msa0945280:intron | 30.0% | |
| AATATGCCTTATGCTATGAT+TGG | + | chr6_3:24021164-24021183 | Msa0945280:CDS | 30.0% | |
| TCACTATCTCAAATATTGCA+AGG | + | chr6_3:24021370-24021389 | Msa0945280:CDS | 30.0% | |
| !!! | TTAGGTGGGTTTGTTTTAAC+TGG | + | chr6_3:24018064-24018083 | Msa0945280:CDS | 35.0% |
| !!! | TGTTTTAACTGGAAACGCTT+TGG | + | chr6_3:24018075-24018094 | Msa0945280:CDS | 35.0% |
| CATAAACAACCACAGTAAAG+AGG | - | chr6_3:24018172-24018191 | None:intergenic | 35.0% | |
| CTTTACTGTGGTTGTTTATG+AGG | + | chr6_3:24018172-24018191 | Msa0945280:intron | 35.0% | |
| GGCATAAAAGGGAAAAAGTA+AGG | - | chr6_3:24018786-24018805 | None:intergenic | 35.0% | |
| AAGGAGCAGATCACAATATT+AGG | - | chr6_3:24018810-24018829 | None:intergenic | 35.0% | |
| AGCATGCATGAAAATGTTGT+AGG | + | chr6_3:24018870-24018889 | Msa0945280:intron | 35.0% | |
| ATGCATGAAAATGTTGTAGG+TGG | + | chr6_3:24018873-24018892 | Msa0945280:intron | 35.0% | |
| TGCATGAAAATGTTGTAGGT+GGG | + | chr6_3:24018874-24018893 | Msa0945280:intron | 35.0% | |
| CAGACATAGTGTCAAATTCA+AGG | - | chr6_3:24018959-24018978 | None:intergenic | 35.0% | |
| TCCTCATCTATTAGAATGGT+CGG | - | chr6_3:24019007-24019026 | None:intergenic | 35.0% | |
| CATCAAACACATTTATTGGC+AGG | - | chr6_3:24019037-24019056 | None:intergenic | 35.0% | |
| ! | GTGTTAATTTTCGTAGGGAA+TGG | + | chr6_3:24019066-24019085 | Msa0945280:intron | 35.0% |
| !! | TGCTTTTTGAAAGACTATGG+TGG | + | chr6_3:24019103-24019122 | Msa0945280:CDS | 35.0% |
| TCCAATGAACAATGAGATTG+AGG | + | chr6_3:24019156-24019175 | Msa0945280:CDS | 35.0% | |
| ACCTCAATCTCATTGTTCAT+TGG | - | chr6_3:24019160-24019179 | None:intergenic | 35.0% | |
| ! | GACAAGCTTTATATGAGGAA+AGG | + | chr6_3:24019199-24019218 | Msa0945280:CDS | 35.0% |
| ! | AGCTTTATATGAGGAAAGGT+TGG | + | chr6_3:24019203-24019222 | Msa0945280:CDS | 35.0% |
| !! | TATATGAGGAAAGGTTGGTA+TGG | + | chr6_3:24019208-24019227 | Msa0945280:CDS | 35.0% |
| ATCGTCAAGGTCATAAGATT+TGG | - | chr6_3:24019292-24019311 | None:intergenic | 35.0% | |
| AAATCTGTTGTTGATCGTCA+AGG | - | chr6_3:24019305-24019324 | None:intergenic | 35.0% | |
| ! | GATCAACAACAGATTTTTCG+AGG | + | chr6_3:24019309-24019328 | Msa0945280:CDS | 35.0% |
| ACTCCTATGTGTACAATTGA+AGG | + | chr6_3:24019692-24019711 | Msa0945280:intron | 35.0% | |
| TCACCTTCAATTGTACACAT+AGG | - | chr6_3:24019698-24019717 | None:intergenic | 35.0% | |
| TGTGTACAATTGAAGGTGAT+TGG | + | chr6_3:24019699-24019718 | Msa0945280:intron | 35.0% | |
| GTGTACAATTGAAGGTGATT+GGG | + | chr6_3:24019700-24019719 | Msa0945280:intron | 35.0% | |
| TGTACAATTGAAGGTGATTG+GGG | + | chr6_3:24019701-24019720 | Msa0945280:intron | 35.0% | |
| GCTTCTATATTCTGTTTCCA+AGG | + | chr6_3:24019887-24019906 | Msa0945280:intron | 35.0% | |
| AACGCAGCATAAACAAAACT+TGG | - | chr6_3:24020162-24020181 | None:intergenic | 35.0% | |
| ! | ATATGGTTGAAGAGTGTAAG+TGG | + | chr6_3:24020240-24020259 | Msa0945280:intron | 35.0% |
| ! | CATGTCTGAAATAGAAACCA+TGG | + | chr6_3:24020429-24020448 | Msa0945280:intron | 35.0% |
| TCGCCTTTAACTGCTAAATA+AGG | - | chr6_3:24020551-24020570 | None:intergenic | 35.0% | |
| TTATTTAGCAGTTAAAGGCG+AGG | + | chr6_3:24020550-24020569 | Msa0945280:intron | 35.0% | |
| AGTTCAGAAAAAGAATGGCA+AGG | + | chr6_3:24020662-24020681 | Msa0945280:CDS | 35.0% | |
| ATAACATTGTAGATGGTGCA+TGG | + | chr6_3:24020724-24020743 | Msa0945280:CDS | 35.0% | |
| TAACATTGTAGATGGTGCAT+GGG | + | chr6_3:24020725-24020744 | Msa0945280:CDS | 35.0% | |
| ! | ATGGGTCTATCTGAAATATG+CGG | + | chr6_3:24020743-24020762 | Msa0945280:CDS | 35.0% |
| ATGGTCATGAGTAGTAGATT+AGG | - | chr6_3:24020771-24020790 | None:intergenic | 35.0% | |
| ACTCATGACCATAAGAAACA+AGG | + | chr6_3:24020779-24020798 | Msa0945280:CDS | 35.0% | |
| TCAAAATCTTGACAGATGTG+CGG | - | chr6_3:24020899-24020918 | None:intergenic | 35.0% | |
| CATATTATTTGCAACAGCGA+AGG | - | chr6_3:24021150-24021169 | None:intergenic | 35.0% | |
| AGGTTTCACATAGTATCCAT+GGG | - | chr6_3:24021312-24021331 | None:intergenic | 35.0% | |
| TAGGTTTCACATAGTATCCA+TGG | - | chr6_3:24021313-24021332 | None:intergenic | 35.0% | |
| TGGATACTATGTGAAACCTA+TGG | + | chr6_3:24021313-24021332 | Msa0945280:CDS | 35.0% | |
| ! | ATTTGAGATAGTGATTGACC+TGG | - | chr6_3:24021364-24021383 | None:intergenic | 35.0% |
| TGCATGTTACCTCTTTACTG+TGG | + | chr6_3:24018160-24018179 | Msa0945280:intron | 40.0% | |
| GACATGCAAAGCTATGTTCT+AGG | - | chr6_3:24018373-24018392 | None:intergenic | 40.0% | |
| !! | CCTATACTGGTAACTTGCTA+AGG | - | chr6_3:24018585-24018604 | None:intergenic | 40.0% |
| CCTTAGCAAGTTACCAGTAT+AGG | + | chr6_3:24018582-24018601 | Msa0945280:intron | 40.0% | |
| ACATAACGATATCAGAGGCA+TGG | - | chr6_3:24018630-24018649 | None:intergenic | 40.0% | |
| AGGCTTCTTGTTACTCTGAT+GGG | - | chr6_3:24018766-24018785 | None:intergenic | 40.0% | |
| AAGGCTTCTTGTTACTCTGA+TGG | - | chr6_3:24018767-24018786 | None:intergenic | 40.0% | |
| GAGCAGATCACAATATTAGG+AGG | - | chr6_3:24018807-24018826 | None:intergenic | 40.0% | |
| GCATGAAAATGTTGTAGGTG+GGG | + | chr6_3:24018875-24018894 | Msa0945280:intron | 40.0% | |
| CATGAAAATGTTGTAGGTGG+GGG | + | chr6_3:24018876-24018895 | Msa0945280:intron | 40.0% | |
| TCATCATTGCCATCTCACTT+GGG | - | chr6_3:24018926-24018945 | None:intergenic | 40.0% | |
| TCCGACCATTCTAATAGATG+AGG | + | chr6_3:24019003-24019022 | Msa0945280:intron | 40.0% | |
| ! | ATGCGCGTGTTAATTTTCGT+AGG | + | chr6_3:24019060-24019079 | Msa0945280:intron | 40.0% |
| ! | TGCGCGTGTTAATTTTCGTA+GGG | + | chr6_3:24019061-24019080 | Msa0945280:intron | 40.0% |
| ! | AATTTTCGTAGGGAATGGGT+CGG | + | chr6_3:24019071-24019090 | Msa0945280:intron | 40.0% |
| GACTTCTACAACATTGAGCT+TGG | + | chr6_3:24019238-24019257 | Msa0945280:CDS | 40.0% | |
| ATTATTGGAGTAGTGTGAGC+AGG | - | chr6_3:24019346-24019365 | None:intergenic | 40.0% | |
| CGGTCCAGTTTGGATATTAT+TGG | - | chr6_3:24019361-24019380 | None:intergenic | 40.0% | |
| ACTTACTCGGATGTTAACTC+AGG | + | chr6_3:24019436-24019455 | Msa0945280:CDS | 40.0% | |
| GGATGTTAACTCAGGATGTT+TGG | + | chr6_3:24019444-24019463 | Msa0945280:CDS | 40.0% | |
| AGGATGTTTGGTATTCACTG+TGG | + | chr6_3:24019456-24019475 | Msa0945280:CDS | 40.0% | |
| ATTAGACATTGCCGTGGTTT+GGG | + | chr6_3:24019567-24019586 | Msa0945280:intron | 40.0% | |
| CGTGTTACCTCCGATAAATA+CGG | + | chr6_3:24019601-24019620 | Msa0945280:intron | 40.0% | |
| ACAGTGAGGTCCGTATTTAT+CGG | - | chr6_3:24019614-24019633 | None:intergenic | 40.0% | |
| CAACGTAATCAATGACAGTG+AGG | - | chr6_3:24019628-24019647 | None:intergenic | 40.0% | |
| ! | CTCACTGTCATTGATTACGT+TGG | + | chr6_3:24019626-24019645 | Msa0945280:intron | 40.0% |
| TTGATTACGTTGGATTTGCC+TGG | + | chr6_3:24019636-24019655 | Msa0945280:intron | 40.0% | |
| TGTCACGCTGAATGAACTTT+AGG | - | chr6_3:24019670-24019689 | None:intergenic | 40.0% | |
| GTACAATTGAAGGTGATTGG+GGG | + | chr6_3:24019702-24019721 | Msa0945280:intron | 40.0% | |
| TGATTGGGGGACAATATGTA+AGG | + | chr6_3:24019715-24019734 | Msa0945280:intron | 40.0% | |
| !! | TGATTAGAGGCATTGATCCA+AGG | + | chr6_3:24019846-24019865 | Msa0945280:intron | 40.0% |
| TCAGACTGCAATATGAACCT+TGG | - | chr6_3:24019866-24019885 | None:intergenic | 40.0% | |
| GGGTACAAAATGCATAACCT+TGG | - | chr6_3:24019907-24019926 | None:intergenic | 40.0% | |
| GCAGCATAAACAAAACTTGG+TGG | - | chr6_3:24020159-24020178 | None:intergenic | 40.0% | |
| GTGGATAAAATGATGCAGAC+CGG | + | chr6_3:24020259-24020278 | Msa0945280:intron | 40.0% | |
| TGACAGATAAAGTTCAGCCA+TGG | - | chr6_3:24020449-24020468 | None:intergenic | 40.0% | |
| ! | TGGGTCTATCTGAAATATGC+GGG | + | chr6_3:24020744-24020763 | Msa0945280:CDS | 40.0% |
| ATGACCATAAGAAACAAGGC+TGG | + | chr6_3:24020783-24020802 | Msa0945280:CDS | 40.0% | |
| !! | CAATCCAGCCTTGTTTCTTA+TGG | - | chr6_3:24020790-24020809 | None:intergenic | 40.0% |
| CATAAGAAACAAGGCTGGAT+TGG | + | chr6_3:24020788-24020807 | Msa0945280:CDS | 40.0% | |
| GCAAGGGATATATCGGATAA+TGG | - | chr6_3:24020825-24020844 | None:intergenic | 40.0% | |
| CCTGATGAAGTAATGAACCT+CGG | - | chr6_3:24020852-24020871 | None:intergenic | 40.0% | |
| CGAGGTTCATTACTTCATCA+GGG | + | chr6_3:24020850-24020869 | Msa0945280:CDS | 40.0% | |
| GAGGTTCATTACTTCATCAG+GGG | + | chr6_3:24020851-24020870 | Msa0945280:CDS | 40.0% | |
| TGCGGAAAAAATGCACTAAC+TGG | - | chr6_3:24020881-24020900 | None:intergenic | 40.0% | |
| ATGCCTTATGCTATGATTGG+TGG | + | chr6_3:24021167-24021186 | Msa0945280:CDS | 40.0% | |
| TCACCACCAATCATAGCATA+AGG | - | chr6_3:24021173-24021192 | None:intergenic | 40.0% | |
| !! | ATGCTATGATTGGTGGTGAT+TGG | + | chr6_3:24021174-24021193 | Msa0945280:CDS | 40.0% |
| GGACTGTGTTATCTTTGTCA+TGG | - | chr6_3:24021259-24021278 | None:intergenic | 40.0% | |
| GACAAAGATAACACAGTCCT+TGG | + | chr6_3:24021260-24021279 | Msa0945280:CDS | 40.0% | |
| TATGTGAAACCTATGGTCAG+CGG | + | chr6_3:24021320-24021339 | Msa0945280:CDS | 40.0% | |
| TGCACAAGGAATGCTGTCAT+TGG | + | chr6_3:24018102-24018121 | Msa0945280:CDS | 45.0% | |
| CGCTGTCATAGAACCTATAC+TGG | - | chr6_3:24018598-24018617 | None:intergenic | 45.0% | |
| !! | TCTTGTTACTCTGATGGGCT+GGG | - | chr6_3:24018761-24018780 | None:intergenic | 45.0% |
| ! | TTCTTGTTACTCTGATGGGC+TGG | - | chr6_3:24018762-24018781 | None:intergenic | 45.0% |
| TGCATGCTGCAAATCAGCTT+TGG | - | chr6_3:24018858-24018877 | None:intergenic | 45.0% | |
| ATCTCACTTGGGGTATACGT+TGG | - | chr6_3:24018915-24018934 | None:intergenic | 45.0% | |
| AACGTATACCCCAAGTGAGA+TGG | + | chr6_3:24018914-24018933 | Msa0945280:CDS | 45.0% | |
| CATCATTGCCATCTCACTTG+GGG | - | chr6_3:24018925-24018944 | None:intergenic | 45.0% | |
| CTCATCATTGCCATCTCACT+TGG | - | chr6_3:24018927-24018946 | None:intergenic | 45.0% | |
| CAAGTGAGATGGCAATGATG+AGG | + | chr6_3:24018925-24018944 | Msa0945280:CDS | 45.0% | |
| ! | GAGGCGACAAGCTTTATATG+AGG | + | chr6_3:24019194-24019213 | Msa0945280:CDS | 45.0% |
| !! | GAAAGGTTGGTATGGACTGA+AGG | + | chr6_3:24019216-24019235 | Msa0945280:CDS | 45.0% |
| !! | ACAACATTGAGCTTGGTGCA+TGG | + | chr6_3:24019245-24019264 | Msa0945280:CDS | 45.0% |
| AAAATCACGACGGTCCAGTT+TGG | - | chr6_3:24019371-24019390 | None:intergenic | 45.0% | |
| ! | AAACTGGACCGTCGTGATTT+TGG | + | chr6_3:24019370-24019389 | Msa0945280:CDS | 45.0% |
| ! | AACTGGACCGTCGTGATTTT+GGG | + | chr6_3:24019371-24019390 | Msa0945280:CDS | 45.0% |
| AATTCCCCCCAAAATCACGA+CGG | - | chr6_3:24019381-24019400 | None:intergenic | 45.0% | |
| !! | TCGTGATTTTGGGGGGAATT+TGG | + | chr6_3:24019381-24019400 | Msa0945280:CDS | 45.0% |
| ATCTGCATTAGACATTGCCG+TGG | + | chr6_3:24019561-24019580 | Msa0945280:intron | 45.0% | |
| CATTAGACATTGCCGTGGTT+TGG | + | chr6_3:24019566-24019585 | Msa0945280:intron | 45.0% | |
| GAACTTTAGGTCACATCTCC+AGG | - | chr6_3:24019657-24019676 | None:intergenic | 45.0% | |
| AACGACCTTCGACAAACCTA+CGG | - | chr6_3:24019742-24019761 | None:intergenic | 45.0% | |
| !!! | TGTACGTTAGTTTTGTGCGG+TGG | + | chr6_3:24020396-24020415 | Msa0945280:intron | 45.0% |
| ! | GGGTCTATCTGAAATATGCG+GGG | + | chr6_3:24020745-24020764 | Msa0945280:CDS | 45.0% |
| CCGAGGTTCATTACTTCATC+AGG | + | chr6_3:24020849-24020868 | Msa0945280:CDS | 45.0% | |
| ! | TATATACCAAAGTGCCCGAG+AGG | - | chr6_3:24020935-24020954 | None:intergenic | 45.0% |
| TGTTTAACCAGACTTTGCCG+TGG | + | chr6_3:24021036-24021055 | Msa0945280:intron | 45.0% | |
| GTTTCTGTGGCAAGGATTTC+TGG | - | chr6_3:24021073-24021092 | None:intergenic | 45.0% | |
| GTAAGTGTGGTAGGTTTCTG+TGG | - | chr6_3:24021086-24021105 | None:intergenic | 45.0% | |
| CCAACAATCGTAAGTGTGGT+AGG | - | chr6_3:24021095-24021114 | None:intergenic | 45.0% | |
| CCTACCACACTTACGATTGT+TGG | + | chr6_3:24021092-24021111 | Msa0945280:CDS | 45.0% | |
| CTTACGATTGTTGGTCCGAA+CGG | + | chr6_3:24021101-24021120 | Msa0945280:CDS | 45.0% | |
| CAACAGCGAACTTAACTGCA+TGG | - | chr6_3:24021235-24021254 | None:intergenic | 45.0% | |
| TGCAGTGTATTGGGGTATGT+CGG | - | chr6_3:24021289-24021308 | None:intergenic | 45.0% | |
| ATCCATGGGTGCAGTGTATT+GGG | - | chr6_3:24021298-24021317 | None:intergenic | 45.0% | |
| TATCCATGGGTGCAGTGTAT+TGG | - | chr6_3:24021299-24021318 | None:intergenic | 45.0% | |
| GAGTATGCTGGAACAGATGT+CGG | + | chr6_3:24021397-24021416 | Msa0945280:CDS | 45.0% | |
| AGTATGCTGGAACAGATGTC+GGG | + | chr6_3:24021398-24021417 | Msa0945280:CDS | 45.0% | |
| ! | AACGCTTTGGATGCTGCACA+AGG | + | chr6_3:24018088-24018107 | Msa0945280:CDS | 50.0% |
| CAAGGAATGCTGTCATTGGC+AGG | + | chr6_3:24018106-24018125 | Msa0945280:CDS | 50.0% | |
| ATCTGCTCCTTGCTTGAGTG+TGG | + | chr6_3:24018819-24018838 | Msa0945280:intron | 50.0% | |
| ! | ACTGGACCGTCGTGATTTTG+GGG | + | chr6_3:24019372-24019391 | Msa0945280:CDS | 50.0% |
| CGCTTACAGAACCCAAACCA+CGG | - | chr6_3:24019581-24019600 | None:intergenic | 50.0% | |
| GTGAGGTCCGTATTTATCGG+AGG | - | chr6_3:24019611-24019630 | None:intergenic | 50.0% | |
| GGACAATATGTAAGGCCCGT+AGG | + | chr6_3:24019723-24019742 | Msa0945280:intron | 50.0% | |
| ACGACCTTCGACAAACCTAC+GGG | - | chr6_3:24019741-24019760 | None:intergenic | 50.0% | |
| AGGTCGTTCGATAGACCTTG+CGG | + | chr6_3:24019754-24019773 | Msa0945280:intron | 50.0% | |
| TTCGATAGACCTTGCGGTCA+CGG | + | chr6_3:24019760-24019779 | Msa0945280:intron | 50.0% | |
| CTGCATTTGTAGACGGCACA+GGG | - | chr6_3:24019823-24019842 | None:intergenic | 50.0% | |
| TCTGCATTTGTAGACGGCAC+AGG | - | chr6_3:24019824-24019843 | None:intergenic | 50.0% | |
| GATAAGTCCTCAACCGAGAC+AGG | - | chr6_3:24020047-24020066 | None:intergenic | 50.0% | |
| GGCAAGGTCTACTTCAGACA+AGG | + | chr6_3:24020678-24020697 | Msa0945280:CDS | 50.0% | |
| AGGTCTACTTCAGACAAGGC+TGG | + | chr6_3:24020682-24020701 | Msa0945280:CDS | 50.0% | |
| !! | ACTTCAGACAAGGCTGGTCT+AGG | + | chr6_3:24020688-24020707 | Msa0945280:CDS | 50.0% |
| !! | CTTCAGACAAGGCTGGTCTA+GGG | + | chr6_3:24020689-24020708 | Msa0945280:CDS | 50.0% |
| CGGCAACGCAAGGGATATAT+CGG | - | chr6_3:24020832-24020851 | None:intergenic | 50.0% | |
| ATATATCCCTTGCGTTGCCG+AGG | + | chr6_3:24020832-24020851 | Msa0945280:CDS | 50.0% | |
| AATGAACCTCGGCAACGCAA+GGG | - | chr6_3:24020841-24020860 | None:intergenic | 50.0% | |
| TAATGAACCTCGGCAACGCA+AGG | - | chr6_3:24020842-24020861 | None:intergenic | 50.0% | |
| GACTTCGTCTGATGTCCTCT+CGG | + | chr6_3:24020917-24020936 | Msa0945280:CDS | 50.0% | |
| ACTTCGTCTGATGTCCTCTC+GGG | + | chr6_3:24020918-24020937 | Msa0945280:CDS | 50.0% | |
| AACCAGACTTTGCCGTGGTA+TGG | + | chr6_3:24021041-24021060 | Msa0945280:intron | 50.0% | |
| TTCTGGCAGAAGCCATACCA+CGG | - | chr6_3:24021056-24021075 | None:intergenic | 50.0% | |
| TGTGGTAGGTTTCTGTGGCA+AGG | - | chr6_3:24021081-24021100 | None:intergenic | 50.0% | |
| CGGACCAACAATCGTAAGTG+TGG | - | chr6_3:24021099-24021118 | None:intergenic | 50.0% | |
| CATCTCCATGTACAGCCGTT+CGG | - | chr6_3:24021119-24021138 | None:intergenic | 50.0% | |
| ! | ACCTGATTTGCACATCGCAG+AGG | + | chr6_3:24021198-24021217 | Msa0945280:CDS | 50.0% |
| ACCTCTGCGATGTGCAAATC+AGG | - | chr6_3:24021202-24021221 | None:intergenic | 50.0% | |
| GATTTGCACATCGCAGAGGT+TGG | + | chr6_3:24021202-24021221 | Msa0945280:CDS | 50.0% | |
| TTGGGGTATGTCGGAAACCA+AGG | - | chr6_3:24021280-24021299 | None:intergenic | 50.0% | |
| TCCATGGGTGCAGTGTATTG+GGG | - | chr6_3:24021297-24021316 | None:intergenic | 50.0% | |
| CAGTGGTCGATATGTGTACC+AGG | + | chr6_3:24021343-24021362 | Msa0945280:CDS | 50.0% | |
| ! | TTGCAAGGCGAAGAGTATGC+TGG | + | chr6_3:24021385-24021404 | Msa0945280:CDS | 50.0% |
| GGAATGCTGTCATTGGCAGG+TGG | + | chr6_3:24018109-24018128 | Msa0945280:intron | 55.0% | |
| CCAACGACCACACTCAAGCA+AGG | - | chr6_3:24018829-24018848 | None:intergenic | 55.0% | |
| CCTTGCTTGAGTGTGGTCGT+TGG | + | chr6_3:24018826-24018845 | Msa0945280:intron | 55.0% | |
| GAGGTTCGACTGTATCGCAG+AGG | + | chr6_3:24019175-24019194 | Msa0945280:CDS | 55.0% | |
| ! | CTGGACCGTCGTGATTTTGG+GGG | + | chr6_3:24019373-24019392 | Msa0945280:CDS | 55.0% |
| ! | TGGACCGTCGTGATTTTGGG+GGG | + | chr6_3:24019374-24019393 | Msa0945280:CDS | 55.0% |
| AAGGCCCGTAGGTTTGTCGA+AGG | + | chr6_3:24019734-24019753 | Msa0945280:intron | 55.0% | |
| !! | ACAAGGCTGGTCTAGGGTGA+AGG | + | chr6_3:24020695-24020714 | Msa0945280:CDS | 55.0% |
| TGATGTCCTCTCGGGCACTT+TGG | + | chr6_3:24020926-24020945 | Msa0945280:CDS | 55.0% | |
| AGCCATACCACGGCAAAGTC+TGG | - | chr6_3:24021046-24021065 | None:intergenic | 55.0% | |
| TTGGTCCGAACGGCTGTACA+TGG | + | chr6_3:24021111-24021130 | Msa0945280:CDS | 55.0% | |
| ! | ACATCGCAGAGGTTGGTTGC+AGG | + | chr6_3:24021209-24021228 | Msa0945280:CDS | 55.0% |
| ACCCCAATACACTGCACCCA+TGG | + | chr6_3:24021293-24021312 | Msa0945280:CDS | 55.0% | |
| AAACCTATGGTCAGCGGCAG+TGG | + | chr6_3:24021326-24021345 | Msa0945280:CDS | 55.0% | |
| GATAGACCTTGCGGTCACGG+AGG | + | chr6_3:24019763-24019782 | Msa0945280:intron | 60.0% | |
| TCTTCTCCTCCGTGACCGCA+AGG | - | chr6_3:24019772-24019791 | None:intergenic | 60.0% | |
| ACGACCTCGATCCTGTGCGA+AGG | + | chr6_3:24020019-24020038 | Msa0945280:CDS | 60.0% | |
| CGACCTCGATCCTGTGCGAA+GGG | + | chr6_3:24020020-24020039 | Msa0945280:CDS | 60.0% | |
| CTGTGCGAAGGGACCTGTCT+CGG | + | chr6_3:24020031-24020050 | Msa0945280:CDS | 60.0% | |
| GAAGGGACCTGTCTCGGTTG+AGG | + | chr6_3:24020037-24020056 | Msa0945280:CDS | 60.0% | |
| GGTCCCTTCGCACAGGATCG+AGG | - | chr6_3:24020026-24020045 | None:intergenic | 65.0% | |
| CGAGACAGGTCCCTTCGCAC+AGG | - | chr6_3:24020033-24020052 | None:intergenic | 65.0% | |
| CGACCACTGCCGCTGACCAT+AGG | - | chr6_3:24021332-24021351 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 24018055 | 24021424 | 24018055 | ID=Msa0945280;Name=Msa0945280 |
| chr6_3 | mRNA | 24018055 | 24021424 | 24018055 | ID=Msa0945280-mRNA-1;Parent=Msa0945280;Name=Msa0945280-mRNA-1;_AED=0.39;_eAED=0.39;_QI=0|0|0|0.5|0.6|0.66|6|0|473 |
| chr6_3 | exon | 24018055 | 24018127 | 24018055 | ID=Msa0945280-mRNA-1:exon:6783;Parent=Msa0945280-mRNA-1 |
| chr6_3 | exon | 24018892 | 24018977 | 24018892 | ID=Msa0945280-mRNA-1:exon:6784;Parent=Msa0945280-mRNA-1 |
| chr6_3 | exon | 24019082 | 24019499 | 24019082 | ID=Msa0945280-mRNA-1:exon:6785;Parent=Msa0945280-mRNA-1 |
| chr6_3 | exon | 24020010 | 24020089 | 24020010 | ID=Msa0945280-mRNA-1:exon:6786;Parent=Msa0945280-mRNA-1 |
| chr6_3 | exon | 24020561 | 24020947 | 24020561 | ID=Msa0945280-mRNA-1:exon:6787;Parent=Msa0945280-mRNA-1 |
| chr6_3 | exon | 24021047 | 24021424 | 24021047 | ID=Msa0945280-mRNA-1:exon:6788;Parent=Msa0945280-mRNA-1 |
| chr6_3 | CDS | 24018055 | 24018127 | 24018055 | ID=Msa0945280-mRNA-1:cds;Parent=Msa0945280-mRNA-1 |
| chr6_3 | CDS | 24018892 | 24018977 | 24018892 | ID=Msa0945280-mRNA-1:cds;Parent=Msa0945280-mRNA-1 |
| chr6_3 | CDS | 24019082 | 24019499 | 24019082 | ID=Msa0945280-mRNA-1:cds;Parent=Msa0945280-mRNA-1 |
| chr6_3 | CDS | 24020010 | 24020089 | 24020010 | ID=Msa0945280-mRNA-1:cds;Parent=Msa0945280-mRNA-1 |
| chr6_3 | CDS | 24020561 | 24020947 | 24020561 | ID=Msa0945280-mRNA-1:cds;Parent=Msa0945280-mRNA-1 |
| chr6_3 | CDS | 24021047 | 24021424 | 24021047 | ID=Msa0945280-mRNA-1:cds;Parent=Msa0945280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
