Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0946940 | KEH43367.1 | 89.423 | 104 | 10 | 1 | 91 | 193 | 11 | 114 | 1.33e-56 | 192 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0946940 | sp|Q9XF67|PDPK1_ARATH | 61.677 | 167 | 51 | 4 | 28 | 193 | 78 | 232 | 5.46e-57 | 189 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0946940 | A0A072VNL2 | 89.423 | 104 | 10 | 1 | 91 | 193 | 11 | 114 | 6.37e-57 | 192 |
Gene ID | Type | Classification |
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Gene ID | Type | Classification |
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Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
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PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0946940 | MtrunA17_Chr1g0197721 | 64.072 | 167 | 47 | 4 | 28 | 193 | 85 | 239 | 1.32e-59 | 193 |
Msa0946940 | MtrunA17_Chr7g0265341 | 92.308 | 52 | 4 | 0 | 1 | 52 | 177 | 228 | 8.08e-25 | 100 |
Msa0946940 | MtrunA17_Chr4g0013131 | 40.367 | 109 | 49 | 3 | 85 | 186 | 85 | 184 | 6.16e-18 | 80.9 |
Msa0946940 | MtrunA17_Chr2g0304111 | 38.017 | 121 | 56 | 4 | 69 | 187 | 94 | 197 | 2.19e-17 | 79.3 |
Msa0946940 | MtrunA17_Chr8g0379091 | 35.211 | 142 | 64 | 4 | 52 | 186 | 78 | 198 | 4.68e-17 | 78.6 |
Msa0946940 | MtrunA17_Chr4g0001331 | 33.566 | 143 | 74 | 4 | 50 | 185 | 63 | 191 | 4.70e-17 | 78.2 |
Msa0946940 | MtrunA17_Chr4g0074111 | 42.105 | 95 | 47 | 1 | 91 | 185 | 103 | 189 | 4.85e-17 | 78.2 |
Msa0946940 | MtrunA17_Chr5g0428031 | 35.526 | 152 | 71 | 6 | 51 | 190 | 53 | 189 | 7.76e-17 | 77.8 |
Msa0946940 | MtrunA17_Chr7g0244521 | 35.758 | 165 | 74 | 7 | 35 | 186 | 39 | 184 | 7.84e-17 | 77.8 |
Msa0946940 | MtrunA17_Chr2g0284031 | 36.496 | 137 | 67 | 5 | 52 | 185 | 83 | 202 | 8.70e-17 | 77.8 |
Msa0946940 | MtrunA17_Chr1g0179701 | 65.385 | 52 | 18 | 0 | 1 | 52 | 169 | 220 | 1.07e-16 | 77.4 |
Msa0946940 | MtrunA17_Chr3g0107051 | 36.885 | 122 | 61 | 3 | 71 | 185 | 80 | 192 | 1.93e-16 | 76.6 |
Msa0946940 | MtrunA17_Chr1g0188031 | 34.959 | 123 | 62 | 3 | 67 | 188 | 91 | 196 | 2.19e-16 | 76.3 |
Msa0946940 | MtrunA17_Chr8g0346081 | 36.735 | 147 | 63 | 7 | 51 | 186 | 61 | 188 | 2.77e-16 | 75.9 |
Msa0946940 | MtrunA17_Chr8g0346071 | 36.054 | 147 | 64 | 7 | 51 | 186 | 61 | 188 | 7.33e-16 | 74.7 |
Msa0946940 | MtrunA17_Chr2g0284011 | 37.500 | 96 | 52 | 1 | 91 | 186 | 97 | 184 | 8.06e-16 | 74.7 |
Msa0946940 | MtrunA17_Chr4g0059751 | 34.884 | 86 | 45 | 1 | 100 | 185 | 191 | 265 | 1.57e-15 | 73.9 |
Msa0946940 | MtrunA17_Chr7g0261491 | 37.190 | 121 | 46 | 3 | 95 | 185 | 210 | 330 | 1.87e-15 | 73.9 |
Msa0946940 | MtrunA17_Chr5g0441011 | 36.885 | 122 | 58 | 4 | 67 | 186 | 82 | 186 | 2.91e-15 | 73.2 |
Msa0946940 | MtrunA17_Chr4g0030361 | 37.383 | 107 | 51 | 2 | 100 | 191 | 406 | 511 | 4.51e-15 | 72.8 |
Msa0946940 | MtrunA17_Chr2g0333821 | 38.542 | 96 | 49 | 2 | 91 | 185 | 99 | 185 | 4.63e-15 | 72.4 |
Msa0946940 | MtrunA17_Chr8g0369091 | 37.190 | 121 | 59 | 3 | 88 | 191 | 684 | 804 | 5.39e-15 | 72.4 |
Msa0946940 | MtrunA17_Chr3g0107011 | 32.540 | 126 | 65 | 3 | 63 | 185 | 77 | 185 | 6.59e-15 | 72.0 |
Msa0946940 | MtrunA17_Chr8g0353621 | 32.237 | 152 | 74 | 5 | 51 | 193 | 54 | 185 | 8.10e-15 | 70.9 |
Msa0946940 | MtrunA17_Chr6g0468751 | 35.659 | 129 | 76 | 2 | 63 | 184 | 70 | 198 | 1.56e-14 | 71.2 |
Msa0946940 | MtrunA17_Chr6g0453681 | 35.659 | 129 | 76 | 2 | 63 | 184 | 70 | 198 | 1.61e-14 | 70.9 |
Msa0946940 | MtrunA17_Chr7g0245031 | 30.534 | 131 | 72 | 4 | 58 | 185 | 203 | 317 | 1.89e-14 | 70.9 |
Msa0946940 | MtrunA17_Chr4g0063881 | 33.557 | 149 | 71 | 6 | 50 | 188 | 54 | 184 | 2.49e-14 | 70.5 |
Msa0946940 | MtrunA17_Chr4g0044541 | 62.745 | 51 | 19 | 0 | 2 | 52 | 142 | 192 | 2.86e-14 | 70.5 |
Msa0946940 | MtrunA17_Chr1g0167311 | 33.898 | 118 | 46 | 2 | 100 | 185 | 210 | 327 | 3.05e-14 | 70.1 |
Msa0946940 | MtrunA17_Chr1g0150321 | 37.113 | 97 | 51 | 2 | 91 | 186 | 98 | 185 | 3.43e-14 | 70.1 |
Msa0946940 | MtrunA17_Chr3g0114511 | 34.694 | 147 | 76 | 4 | 44 | 186 | 72 | 202 | 3.72e-14 | 70.1 |
Msa0946940 | MtrunA17_Chr3g0134141 | 64.706 | 51 | 18 | 0 | 2 | 52 | 132 | 182 | 3.72e-14 | 70.1 |
Msa0946940 | MtrunA17_Chr3g0125381 | 34.677 | 124 | 63 | 3 | 64 | 187 | 19 | 124 | 4.24e-14 | 68.2 |
Msa0946940 | MtrunA17_Chr5g0432491 | 34.167 | 120 | 62 | 3 | 67 | 185 | 92 | 195 | 4.73e-14 | 69.7 |
Msa0946940 | MtrunA17_Chr1g0183651 | 50.000 | 64 | 32 | 0 | 95 | 158 | 210 | 273 | 5.46e-14 | 69.7 |
Msa0946940 | MtrunA17_Chr1g0205421 | 34.454 | 119 | 62 | 2 | 67 | 185 | 81 | 183 | 7.47e-14 | 68.9 |
Msa0946940 | MtrunA17_Chr1g0190131 | 30.108 | 186 | 109 | 5 | 9 | 185 | 5 | 178 | 1.07e-13 | 67.8 |
Msa0946940 | MtrunA17_Chr3g0132671 | 36.842 | 95 | 59 | 1 | 91 | 184 | 134 | 228 | 1.31e-13 | 68.6 |
Msa0946940 | MtrunA17_Chr2g0309421 | 58.333 | 48 | 20 | 0 | 100 | 147 | 274 | 321 | 1.34e-13 | 68.6 |
Msa0946940 | MtrunA17_Chr2g0285711 | 54.902 | 51 | 23 | 0 | 97 | 147 | 183 | 233 | 2.51e-13 | 67.4 |
Msa0946940 | MtrunA17_Chr1g0153181 | 58.824 | 51 | 21 | 0 | 2 | 52 | 140 | 190 | 2.60e-13 | 67.8 |
Msa0946940 | MtrunA17_Chr8g0381091 | 33.333 | 135 | 42 | 3 | 98 | 184 | 180 | 314 | 3.91e-13 | 67.0 |
Msa0946940 | MtrunA17_Chr1g0167351 | 40.476 | 84 | 50 | 0 | 100 | 183 | 205 | 288 | 4.03e-13 | 67.0 |
Msa0946940 | MtrunA17_Chr3g0091311 | 31.788 | 151 | 80 | 4 | 44 | 188 | 52 | 185 | 4.31e-13 | 65.9 |
Msa0946940 | MtrunA17_Chr6g0478601 | 59.184 | 49 | 20 | 0 | 100 | 148 | 206 | 254 | 5.85e-13 | 66.6 |
Msa0946940 | MtrunA17_Chr4g0018201 | 59.184 | 49 | 20 | 0 | 100 | 148 | 854 | 902 | 6.40e-13 | 66.6 |
Msa0946940 | MtrunA17_Chr2g0312641 | 56.000 | 50 | 22 | 0 | 98 | 147 | 191 | 240 | 6.47e-13 | 66.2 |
Msa0946940 | MtrunA17_Chr3g0091291 | 35.294 | 119 | 60 | 2 | 67 | 185 | 29 | 130 | 7.51e-13 | 64.7 |
Msa0946940 | MtrunA17_Chr5g0432471 | 31.496 | 127 | 65 | 4 | 63 | 185 | 75 | 183 | 7.96e-13 | 66.2 |
Msa0946940 | MtrunA17_Chr8g0351491 | 39.130 | 92 | 43 | 1 | 97 | 188 | 108 | 186 | 1.05e-12 | 65.1 |
Msa0946940 | MtrunA17_Chr3g0091421 | 30.270 | 185 | 99 | 6 | 11 | 188 | 24 | 185 | 1.12e-12 | 64.3 |
Msa0946940 | MtrunA17_Chr5g0428981 | 57.143 | 49 | 21 | 0 | 100 | 148 | 858 | 906 | 1.13e-12 | 65.9 |
Msa0946940 | MtrunA17_Chr1g0166101 | 32.500 | 120 | 63 | 3 | 67 | 185 | 94 | 196 | 1.18e-12 | 65.5 |
Msa0946940 | MtrunA17_Chr4g0072831 | 40.244 | 82 | 42 | 1 | 74 | 148 | 51 | 132 | 1.30e-12 | 65.1 |
Msa0946940 | MtrunA17_Chr7g0234641 | 48.276 | 58 | 30 | 0 | 90 | 147 | 107 | 164 | 2.32e-12 | 64.7 |
Msa0946940 | MtrunA17_Chr8g0335351 | 62.791 | 43 | 16 | 0 | 105 | 147 | 474 | 516 | 2.58e-12 | 64.7 |
Msa0946940 | MtrunA17_Chr3g0135951 | 46.479 | 71 | 37 | 1 | 100 | 169 | 189 | 259 | 3.25e-12 | 64.3 |
Msa0946940 | MtrunA17_Chr5g0399911 | 33.793 | 145 | 71 | 7 | 46 | 186 | 64 | 187 | 3.64e-12 | 63.9 |
Msa0946940 | MtrunA17_Chr2g0327561 | 32.520 | 123 | 68 | 3 | 35 | 147 | 655 | 772 | 3.91e-12 | 64.3 |
Msa0946940 | MtrunA17_Chr3g0129721 | 33.962 | 159 | 73 | 8 | 39 | 185 | 58 | 196 | 4.40e-12 | 63.2 |
Msa0946940 | MtrunA17_Chr7g0250631 | 38.202 | 89 | 54 | 1 | 105 | 192 | 468 | 556 | 4.68e-12 | 63.9 |
Msa0946940 | MtrunA17_Chr1g0187581 | 34.021 | 97 | 57 | 1 | 69 | 158 | 174 | 270 | 5.16e-12 | 63.9 |
Msa0946940 | MtrunA17_Chr6g0453671 | 35.780 | 109 | 52 | 3 | 85 | 186 | 92 | 189 | 5.57e-12 | 63.5 |
Msa0946940 | MtrunA17_Chr3g0080101 | 39.535 | 86 | 48 | 2 | 62 | 147 | 480 | 561 | 5.60e-12 | 63.9 |
Msa0946940 | MtrunA17_Chr2g0299781 | 48.333 | 60 | 31 | 0 | 100 | 159 | 208 | 267 | 7.99e-12 | 63.2 |
Msa0946940 | MtrunA17_Chr1g0201151 | 52.941 | 51 | 24 | 0 | 2 | 52 | 138 | 188 | 9.30e-12 | 63.2 |
Msa0946940 | MtrunA17_Chr2g0321101 | 51.020 | 49 | 24 | 0 | 99 | 147 | 190 | 238 | 1.06e-11 | 62.8 |
Msa0946940 | MtrunA17_Chr7g0227331 | 54.167 | 48 | 22 | 0 | 100 | 147 | 331 | 378 | 1.15e-11 | 62.8 |
Msa0946940 | MtrunA17_Chr6g0449401 | 32.787 | 122 | 78 | 1 | 26 | 147 | 329 | 446 | 1.16e-11 | 62.8 |
Msa0946940 | MtrunA17_Chr1g0179101 | 55.319 | 47 | 21 | 0 | 101 | 147 | 570 | 616 | 1.26e-11 | 62.8 |
Msa0946940 | MtrunA17_Chr7g0266031 | 60.465 | 43 | 17 | 0 | 105 | 147 | 596 | 638 | 1.39e-11 | 62.8 |
Msa0946940 | MtrunA17_Chr3g0140631 | 35.714 | 98 | 49 | 2 | 91 | 187 | 122 | 206 | 1.54e-11 | 62.0 |
Msa0946940 | MtrunA17_Chr8g0356291 | 47.917 | 48 | 25 | 0 | 100 | 147 | 226 | 273 | 1.78e-11 | 62.0 |
Msa0946940 | MtrunA17_Chr5g0426521 | 31.373 | 153 | 75 | 7 | 44 | 185 | 38 | 171 | 1.90e-11 | 61.6 |
Msa0946940 | MtrunA17_Chr2g0277501 | 30.000 | 150 | 85 | 6 | 43 | 186 | 37 | 172 | 2.55e-11 | 61.6 |
Msa0946940 | MtrunA17_Chr6g0465751 | 52.941 | 51 | 24 | 0 | 2 | 52 | 133 | 183 | 2.88e-11 | 61.6 |
Msa0946940 | MtrunA17_Chr4g0061141 | 34.259 | 108 | 55 | 2 | 85 | 185 | 179 | 277 | 2.97e-11 | 61.6 |
Msa0946940 | MtrunA17_Chr6g0466501 | 52.941 | 51 | 24 | 0 | 2 | 52 | 133 | 183 | 3.22e-11 | 61.6 |
Msa0946940 | MtrunA17_Chr6g0465691 | 52.941 | 51 | 24 | 0 | 2 | 52 | 51 | 101 | 3.48e-11 | 61.2 |
Msa0946940 | MtrunA17_Chr4g0069301 | 34.862 | 109 | 54 | 4 | 85 | 185 | 99 | 198 | 3.77e-11 | 61.2 |
Msa0946940 | MtrunA17_Chr0c09g0493511 | 52.941 | 51 | 24 | 0 | 2 | 52 | 51 | 101 | 3.94e-11 | 61.2 |
Msa0946940 | MtrunA17_Chr8g0338741 | 50.000 | 48 | 24 | 0 | 100 | 147 | 127 | 174 | 4.44e-11 | 60.8 |
Msa0946940 | MtrunA17_Chr7g0248461 | 34.259 | 108 | 52 | 4 | 85 | 185 | 115 | 210 | 4.74e-11 | 60.8 |
Msa0946940 | MtrunA17_Chr5g0424531 | 30.769 | 104 | 60 | 3 | 90 | 193 | 101 | 192 | 5.72e-11 | 60.1 |
Msa0946940 | MtrunA17_Chr3g0091281 | 32.414 | 145 | 74 | 4 | 50 | 188 | 59 | 185 | 6.09e-11 | 59.7 |
Msa0946940 | MtrunA17_Chr4g0063311 | 46.939 | 49 | 26 | 0 | 99 | 147 | 194 | 242 | 9.51e-11 | 60.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0946940 | AT5G04510.3 | 61.677 | 167 | 51 | 4 | 28 | 193 | 78 | 232 | 4.01e-60 | 190 |
Msa0946940 | AT5G04510.2 | 61.677 | 167 | 51 | 4 | 28 | 193 | 78 | 232 | 1.42e-58 | 189 |
Msa0946940 | AT5G04510.1 | 61.677 | 167 | 51 | 4 | 28 | 193 | 78 | 232 | 5.55e-58 | 189 |
Msa0946940 | AT3G10540.1 | 61.078 | 167 | 52 | 4 | 28 | 193 | 79 | 233 | 1.83e-57 | 188 |
Msa0946940 | AT1G29230.1 | 31.737 | 167 | 76 | 6 | 40 | 186 | 98 | 246 | 9.67e-20 | 86.7 |
Msa0946940 | AT2G26980.2 | 37.838 | 148 | 64 | 6 | 50 | 186 | 57 | 187 | 3.49e-18 | 80.1 |
Msa0946940 | AT2G26980.1 | 37.838 | 148 | 64 | 6 | 50 | 186 | 57 | 187 | 4.54e-18 | 81.3 |
Msa0946940 | AT2G26980.4 | 37.838 | 148 | 64 | 6 | 50 | 186 | 67 | 197 | 5.23e-18 | 81.3 |
Msa0946940 | AT2G26980.3 | 37.838 | 148 | 64 | 6 | 50 | 186 | 57 | 187 | 5.35e-18 | 81.3 |
Msa0946940 | AT2G26980.5 | 37.838 | 148 | 64 | 6 | 50 | 186 | 57 | 187 | 5.56e-18 | 81.3 |
Msa0946940 | AT5G25110.1 | 36.986 | 146 | 65 | 5 | 50 | 185 | 86 | 214 | 1.39e-17 | 80.1 |
Msa0946940 | AT5G10930.1 | 37.415 | 147 | 65 | 5 | 50 | 186 | 56 | 185 | 1.68e-17 | 80.1 |
Msa0946940 | AT4G24400.1 | 36.301 | 146 | 65 | 6 | 51 | 186 | 53 | 180 | 1.78e-17 | 79.7 |
Msa0946940 | AT4G24400.2 | 36.301 | 146 | 65 | 6 | 51 | 186 | 53 | 180 | 1.97e-17 | 79.7 |
Msa0946940 | AT5G45810.1 | 35.036 | 137 | 69 | 3 | 52 | 185 | 80 | 199 | 4.88e-17 | 78.6 |
Msa0946940 | AT1G30270.1 | 36.154 | 130 | 60 | 5 | 63 | 187 | 94 | 205 | 6.63e-17 | 78.2 |
Msa0946940 | AT1G30270.2 | 36.154 | 130 | 60 | 5 | 63 | 187 | 94 | 205 | 7.82e-17 | 78.2 |
Msa0946940 | AT4G18700.1 | 36.496 | 137 | 67 | 5 | 52 | 185 | 78 | 197 | 7.87e-17 | 78.2 |
Msa0946940 | AT2G34180.1 | 31.548 | 168 | 83 | 6 | 32 | 186 | 81 | 229 | 8.30e-17 | 78.2 |
Msa0946940 | AT1G30270.3 | 37.815 | 119 | 54 | 4 | 71 | 187 | 8 | 108 | 8.40e-17 | 77.8 |
Msa0946940 | AT5G01810.3 | 36.441 | 118 | 58 | 3 | 71 | 188 | 86 | 186 | 1.78e-16 | 76.6 |
Msa0946940 | AT5G01810.1 | 36.441 | 118 | 58 | 3 | 71 | 188 | 86 | 186 | 1.87e-16 | 77.0 |
Msa0946940 | AT5G01810.2 | 36.441 | 118 | 58 | 3 | 71 | 188 | 86 | 186 | 1.87e-16 | 77.0 |
Msa0946940 | AT5G58140.3 | 37.391 | 115 | 55 | 2 | 88 | 185 | 662 | 776 | 1.94e-16 | 77.0 |
Msa0946940 | AT5G58140.6 | 37.391 | 115 | 55 | 2 | 88 | 185 | 662 | 776 | 2.16e-16 | 77.0 |
Msa0946940 | AT5G58140.7 | 37.391 | 115 | 55 | 2 | 88 | 185 | 662 | 776 | 2.16e-16 | 77.0 |
Msa0946940 | AT5G58140.5 | 37.391 | 115 | 55 | 2 | 88 | 185 | 662 | 776 | 2.16e-16 | 77.0 |
Msa0946940 | AT5G58140.2 | 37.391 | 115 | 55 | 2 | 88 | 185 | 662 | 776 | 2.16e-16 | 77.0 |
Msa0946940 | AT5G58140.1 | 37.391 | 115 | 55 | 2 | 88 | 185 | 662 | 776 | 2.16e-16 | 77.0 |
Msa0946940 | AT5G21326.1 | 35.135 | 148 | 68 | 6 | 50 | 186 | 56 | 186 | 4.40e-16 | 75.9 |
Msa0946940 | AT4G30960.1 | 42.105 | 95 | 47 | 2 | 91 | 185 | 109 | 195 | 8.85e-16 | 75.1 |
Msa0946940 | AT2G25090.1 | 42.424 | 99 | 55 | 2 | 90 | 187 | 100 | 197 | 1.38e-15 | 74.3 |
Msa0946940 | AT1G22760.1 | 68.627 | 51 | 16 | 0 | 2 | 52 | 156 | 206 | 1.74e-15 | 74.3 |
Msa0946940 | AT5G45820.1 | 30.667 | 150 | 86 | 4 | 46 | 185 | 42 | 183 | 1.83e-15 | 73.9 |
Msa0946940 | AT2G45490.2 | 34.694 | 147 | 65 | 5 | 51 | 187 | 66 | 191 | 2.67e-15 | 72.4 |
Msa0946940 | AT2G45490.1 | 34.694 | 147 | 65 | 5 | 51 | 187 | 66 | 191 | 4.62e-15 | 72.0 |
Msa0946940 | AT4G14350.3 | 37.705 | 122 | 45 | 3 | 95 | 185 | 209 | 330 | 4.98e-15 | 72.8 |
Msa0946940 | AT4G14350.2 | 37.705 | 122 | 45 | 3 | 95 | 185 | 209 | 330 | 5.13e-15 | 72.8 |
Msa0946940 | AT4G14350.1 | 37.705 | 122 | 45 | 3 | 95 | 185 | 209 | 330 | 5.13e-15 | 72.8 |
Msa0946940 | AT4G14350.4 | 37.705 | 122 | 45 | 3 | 95 | 185 | 209 | 330 | 5.13e-15 | 72.8 |
Msa0946940 | AT1G01140.1 | 36.066 | 122 | 59 | 4 | 67 | 186 | 88 | 192 | 6.06e-15 | 72.4 |
Msa0946940 | AT1G01140.2 | 36.066 | 122 | 59 | 4 | 67 | 186 | 88 | 192 | 6.08e-15 | 72.4 |
Msa0946940 | AT1G01140.3 | 36.066 | 122 | 59 | 4 | 67 | 186 | 88 | 192 | 6.27e-15 | 72.4 |
Msa0946940 | AT3G23000.1 | 33.058 | 121 | 63 | 3 | 67 | 186 | 95 | 198 | 8.64e-15 | 72.0 |
Msa0946940 | AT1G71770.1 | 66.667 | 51 | 17 | 0 | 2 | 52 | 166 | 216 | 9.08e-15 | 72.4 |
Msa0946940 | AT1G71770.2 | 66.667 | 51 | 17 | 0 | 2 | 52 | 166 | 216 | 9.08e-15 | 72.4 |
Msa0946940 | AT2G36660.1 | 65.385 | 52 | 18 | 0 | 1 | 52 | 131 | 182 | 1.08e-14 | 72.0 |
Msa0946940 | AT2G20470.2 | 27.225 | 191 | 94 | 4 | 40 | 185 | 143 | 333 | 1.37e-14 | 71.6 |
Msa0946940 | AT2G20470.1 | 27.225 | 191 | 94 | 4 | 40 | 185 | 143 | 333 | 1.37e-14 | 71.6 |
Msa0946940 | AT2G20470.3 | 27.225 | 191 | 94 | 4 | 40 | 185 | 143 | 333 | 1.40e-14 | 71.6 |
Msa0946940 | AT5G35410.2 | 36.129 | 155 | 69 | 7 | 42 | 186 | 48 | 182 | 1.45e-14 | 71.2 |
Msa0946940 | AT5G35410.1 | 36.129 | 155 | 69 | 7 | 42 | 186 | 48 | 182 | 1.71e-14 | 71.2 |
Msa0946940 | AT3G23310.1 | 35.484 | 124 | 47 | 2 | 95 | 185 | 210 | 333 | 1.93e-14 | 71.2 |
Msa0946940 | AT3G29160.3 | 39.252 | 107 | 58 | 2 | 85 | 184 | 93 | 199 | 2.26e-14 | 70.5 |
Msa0946940 | AT5G57565.5 | 32.283 | 127 | 64 | 5 | 69 | 184 | 11 | 126 | 2.44e-14 | 67.4 |
Msa0946940 | AT5G57565.1 | 32.283 | 127 | 64 | 5 | 69 | 184 | 11 | 126 | 2.44e-14 | 67.4 |
Msa0946940 | AT3G29160.1 | 39.252 | 107 | 58 | 2 | 85 | 184 | 93 | 199 | 2.85e-14 | 70.9 |
Msa0946940 | AT3G29160.2 | 39.252 | 107 | 58 | 2 | 85 | 184 | 93 | 199 | 2.85e-14 | 70.9 |
Msa0946940 | AT3G12690.1 | 51.667 | 60 | 29 | 0 | 88 | 147 | 270 | 329 | 3.71e-14 | 70.5 |
Msa0946940 | AT3G12690.3 | 51.667 | 60 | 29 | 0 | 88 | 147 | 270 | 329 | 3.71e-14 | 70.5 |
Msa0946940 | AT3G12690.2 | 51.667 | 60 | 29 | 0 | 88 | 147 | 270 | 329 | 3.71e-14 | 70.5 |
Msa0946940 | AT1G03920.2 | 53.226 | 62 | 29 | 0 | 97 | 158 | 116 | 177 | 4.86e-14 | 70.1 |
Msa0946940 | AT2G38490.1 | 36.134 | 119 | 60 | 4 | 67 | 185 | 97 | 199 | 5.03e-14 | 70.1 |
Msa0946940 | AT1G03920.1 | 51.562 | 64 | 31 | 0 | 95 | 158 | 227 | 290 | 5.22e-14 | 70.1 |
Msa0946940 | AT1G03920.3 | 51.562 | 64 | 31 | 0 | 95 | 158 | 227 | 290 | 5.22e-14 | 70.1 |
Msa0946940 | AT5G57630.2 | 29.078 | 141 | 76 | 4 | 50 | 185 | 59 | 180 | 6.91e-14 | 69.3 |
Msa0946940 | AT5G57630.1 | 29.078 | 141 | 76 | 4 | 50 | 185 | 59 | 180 | 6.99e-14 | 69.3 |
Msa0946940 | AT2G30360.1 | 38.776 | 98 | 49 | 3 | 91 | 186 | 107 | 195 | 7.71e-14 | 69.3 |
Msa0946940 | AT5G62310.1 | 38.776 | 98 | 46 | 3 | 57 | 148 | 808 | 897 | 8.09e-14 | 69.7 |
Msa0946940 | AT3G01090.2 | 38.542 | 96 | 58 | 1 | 90 | 184 | 126 | 221 | 8.57e-14 | 69.3 |
Msa0946940 | AT3G01090.3 | 38.542 | 96 | 58 | 1 | 90 | 184 | 103 | 198 | 8.95e-14 | 69.3 |
Msa0946940 | AT3G01090.1 | 38.542 | 96 | 58 | 1 | 90 | 184 | 103 | 198 | 8.95e-14 | 69.3 |
Msa0946940 | AT4G14580.1 | 36.082 | 97 | 51 | 3 | 91 | 185 | 107 | 194 | 1.06e-13 | 68.9 |
Msa0946940 | AT5G21222.1 | 33.333 | 147 | 72 | 5 | 50 | 186 | 56 | 186 | 1.16e-13 | 68.9 |
Msa0946940 | AT5G21222.2 | 33.333 | 147 | 72 | 5 | 50 | 186 | 56 | 186 | 1.16e-13 | 68.9 |
Msa0946940 | AT5G21222.4 | 33.333 | 147 | 72 | 5 | 50 | 186 | 56 | 186 | 1.16e-13 | 68.9 |
Msa0946940 | AT5G21222.3 | 33.333 | 147 | 72 | 5 | 50 | 186 | 56 | 186 | 1.16e-13 | 68.9 |
Msa0946940 | AT1G79250.1 | 39.535 | 86 | 48 | 1 | 62 | 147 | 209 | 290 | 1.41e-13 | 68.6 |
Msa0946940 | AT1G79250.3 | 39.535 | 86 | 48 | 1 | 62 | 147 | 209 | 290 | 1.41e-13 | 68.6 |
Msa0946940 | AT1G79250.2 | 39.535 | 86 | 48 | 1 | 62 | 147 | 209 | 290 | 1.41e-13 | 68.6 |
Msa0946940 | AT1G79250.4 | 39.535 | 86 | 48 | 1 | 62 | 147 | 209 | 290 | 1.41e-13 | 68.6 |
Msa0946940 | AT5G58380.1 | 31.081 | 148 | 73 | 5 | 50 | 186 | 55 | 184 | 1.48e-13 | 68.6 |
Msa0946940 | AT5G57565.4 | 31.746 | 126 | 64 | 5 | 69 | 183 | 11 | 125 | 1.97e-13 | 65.9 |
Msa0946940 | AT5G57630.3 | 33.708 | 89 | 48 | 2 | 97 | 185 | 15 | 92 | 2.79e-13 | 67.4 |
Msa0946940 | AT1G49760.1 | 58.824 | 51 | 21 | 0 | 2 | 52 | 153 | 203 | 3.91e-13 | 67.4 |
Msa0946940 | AT1G49760.2 | 58.824 | 51 | 21 | 0 | 2 | 52 | 153 | 203 | 3.91e-13 | 67.4 |
Msa0946940 | AT3G17510.1 | 32.484 | 157 | 82 | 5 | 36 | 185 | 53 | 192 | 4.16e-13 | 67.4 |
Msa0946940 | AT5G39440.1 | 35.714 | 112 | 54 | 3 | 85 | 189 | 92 | 192 | 4.18e-13 | 67.4 |
Msa0946940 | AT3G08730.1 | 29.771 | 131 | 73 | 5 | 58 | 185 | 189 | 303 | 5.98e-13 | 67.0 |
Msa0946940 | AT3G08730.2 | 29.771 | 131 | 73 | 5 | 58 | 185 | 189 | 303 | 5.98e-13 | 67.0 |
Msa0946940 | AT3G17850.1 | 59.184 | 49 | 20 | 0 | 100 | 148 | 977 | 1025 | 6.05e-13 | 67.0 |
Msa0946940 | AT2G34650.1 | 57.143 | 49 | 21 | 0 | 99 | 147 | 176 | 224 | 6.22e-13 | 66.6 |
Msa0946940 | AT4G34110.1 | 58.824 | 51 | 21 | 0 | 2 | 52 | 144 | 194 | 6.32e-13 | 67.0 |
Msa0946940 | AT1G16440.1 | 39.535 | 86 | 48 | 2 | 62 | 147 | 178 | 259 | 6.51e-13 | 66.6 |
Msa0946940 | AT4G33080.2 | 43.243 | 74 | 41 | 1 | 100 | 172 | 189 | 262 | 6.54e-13 | 66.6 |
Msa0946940 | AT4G33080.1 | 43.243 | 74 | 41 | 1 | 100 | 172 | 189 | 262 | 6.91e-13 | 66.6 |
Msa0946940 | AT1G48260.1 | 31.410 | 156 | 83 | 5 | 37 | 185 | 45 | 183 | 8.63e-13 | 66.2 |
Msa0946940 | AT1G48490.3 | 57.143 | 49 | 21 | 0 | 100 | 148 | 923 | 971 | 9.50e-13 | 66.6 |
Msa0946940 | AT1G48490.2 | 57.143 | 49 | 21 | 0 | 100 | 148 | 923 | 971 | 9.50e-13 | 66.6 |
Msa0946940 | AT1G48490.1 | 57.143 | 49 | 21 | 0 | 100 | 148 | 923 | 971 | 9.50e-13 | 66.6 |
Msa0946940 | AT1G48490.4 | 57.143 | 49 | 21 | 0 | 100 | 148 | 924 | 972 | 9.96e-13 | 66.6 |
Msa0946940 | AT1G30640.2 | 51.852 | 54 | 26 | 0 | 95 | 148 | 210 | 263 | 1.45e-12 | 65.9 |
Msa0946940 | AT1G30640.1 | 51.852 | 54 | 26 | 0 | 95 | 148 | 210 | 263 | 1.45e-12 | 65.9 |
Msa0946940 | AT1G30640.3 | 51.852 | 54 | 26 | 0 | 95 | 148 | 117 | 170 | 1.57e-12 | 65.5 |
Msa0946940 | AT3G08720.1 | 29.771 | 131 | 73 | 5 | 58 | 185 | 195 | 309 | 1.85e-12 | 65.5 |
Msa0946940 | AT3G08720.3 | 29.771 | 131 | 73 | 5 | 58 | 185 | 195 | 309 | 1.85e-12 | 65.5 |
Msa0946940 | AT3G08720.4 | 29.771 | 131 | 73 | 5 | 58 | 185 | 195 | 309 | 1.85e-12 | 65.5 |
Msa0946940 | AT3G08720.2 | 29.771 | 131 | 73 | 5 | 58 | 185 | 195 | 309 | 1.85e-12 | 65.5 |
Msa0946940 | AT2G44830.2 | 62.791 | 43 | 16 | 0 | 105 | 147 | 465 | 507 | 2.57e-12 | 65.1 |
Msa0946940 | AT2G44830.3 | 62.791 | 43 | 16 | 0 | 105 | 147 | 465 | 507 | 2.57e-12 | 65.1 |
Msa0946940 | AT2G44830.1 | 62.791 | 43 | 16 | 0 | 105 | 147 | 465 | 507 | 2.57e-12 | 65.1 |
Msa0946940 | AT5G57565.2 | 36.264 | 91 | 47 | 3 | 69 | 148 | 11 | 101 | 2.80e-12 | 61.6 |
Msa0946940 | AT5G57565.6 | 36.264 | 91 | 47 | 3 | 69 | 148 | 11 | 101 | 2.80e-12 | 61.6 |
Msa0946940 | AT5G55910.2 | 51.020 | 49 | 24 | 0 | 99 | 147 | 205 | 253 | 2.82e-12 | 65.1 |
Msa0946940 | AT5G55910.1 | 51.020 | 49 | 24 | 0 | 99 | 147 | 205 | 253 | 2.82e-12 | 65.1 |
Msa0946940 | AT3G17510.2 | 39.175 | 97 | 48 | 3 | 91 | 185 | 25 | 112 | 2.94e-12 | 64.7 |
Msa0946940 | AT3G45780.2 | 48.333 | 60 | 31 | 0 | 88 | 147 | 748 | 807 | 3.47e-12 | 64.7 |
Msa0946940 | AT3G45780.1 | 48.333 | 60 | 31 | 0 | 88 | 147 | 748 | 807 | 3.47e-12 | 64.7 |
Msa0946940 | AT5G09890.2 | 45.161 | 62 | 34 | 0 | 100 | 161 | 197 | 258 | 5.14e-12 | 64.3 |
Msa0946940 | AT5G09890.1 | 45.161 | 62 | 34 | 0 | 100 | 161 | 197 | 258 | 5.34e-12 | 63.9 |
Msa0946940 | AT1G73500.1 | 37.500 | 88 | 45 | 2 | 96 | 183 | 135 | 212 | 7.51e-12 | 63.2 |
Msa0946940 | AT4G26610.1 | 48.980 | 49 | 25 | 0 | 99 | 147 | 219 | 267 | 8.22e-12 | 63.5 |
Msa0946940 | AT2G19400.1 | 38.462 | 91 | 48 | 1 | 71 | 161 | 179 | 261 | 9.87e-12 | 63.2 |
Msa0946940 | AT5G03640.2 | 62.791 | 43 | 16 | 0 | 105 | 147 | 643 | 685 | 1.17e-11 | 63.2 |
Msa0946940 | AT5G03640.1 | 62.791 | 43 | 16 | 0 | 105 | 147 | 643 | 685 | 1.17e-11 | 63.2 |
Msa0946940 | AT1G07880.1 | 32.456 | 114 | 59 | 4 | 85 | 191 | 110 | 212 | 1.23e-11 | 62.0 |
Msa0946940 | AT1G18350.1 | 34.409 | 93 | 51 | 2 | 96 | 188 | 133 | 215 | 1.29e-11 | 62.4 |
Msa0946940 | AT1G53700.1 | 46.667 | 60 | 32 | 0 | 88 | 147 | 179 | 238 | 1.32e-11 | 62.8 |
Msa0946940 | AT1G45160.1 | 50.847 | 59 | 28 | 1 | 91 | 148 | 755 | 813 | 1.52e-11 | 63.2 |
Msa0946940 | AT1G45160.2 | 55.102 | 49 | 22 | 0 | 100 | 148 | 765 | 813 | 1.65e-11 | 62.8 |
Msa0946940 | AT1G48260.2 | 38.144 | 97 | 49 | 3 | 91 | 185 | 11 | 98 | 1.68e-11 | 62.4 |
Msa0946940 | AT1G48260.4 | 38.144 | 97 | 49 | 3 | 91 | 185 | 11 | 98 | 1.68e-11 | 62.4 |
Msa0946940 | AT1G48260.3 | 38.144 | 97 | 49 | 3 | 91 | 185 | 11 | 98 | 1.68e-11 | 62.4 |
Msa0946940 | AT1G48260.5 | 38.144 | 97 | 49 | 3 | 91 | 185 | 11 | 98 | 1.68e-11 | 62.4 |
Msa0946940 | AT1G78290.3 | 38.000 | 100 | 48 | 4 | 91 | 187 | 85 | 173 | 1.79e-11 | 62.4 |
Msa0946940 | AT1G78290.2 | 38.000 | 100 | 48 | 4 | 91 | 187 | 85 | 173 | 1.79e-11 | 62.4 |
Msa0946940 | AT5G40030.1 | 33.333 | 123 | 67 | 4 | 35 | 147 | 141 | 258 | 1.83e-11 | 62.4 |
Msa0946940 | AT2G46070.2 | 33.333 | 108 | 53 | 4 | 85 | 185 | 118 | 213 | 2.30e-11 | 62.0 |
Msa0946940 | AT3G44610.1 | 40.260 | 77 | 38 | 2 | 99 | 167 | 175 | 251 | 2.42e-11 | 62.0 |
Msa0946940 | AT3G14370.1 | 45.000 | 60 | 33 | 0 | 88 | 147 | 173 | 232 | 2.43e-11 | 62.0 |
Msa0946940 | AT2G26700.1 | 48.980 | 49 | 25 | 0 | 99 | 147 | 185 | 233 | 2.75e-11 | 62.0 |
Msa0946940 | AT1G12680.1 | 30.303 | 132 | 74 | 3 | 62 | 186 | 151 | 271 | 2.78e-11 | 62.0 |
Msa0946940 | AT5G01820.1 | 32.000 | 150 | 77 | 5 | 42 | 185 | 63 | 193 | 3.10e-11 | 62.0 |
Msa0946940 | AT3G27580.2 | 54.348 | 46 | 21 | 0 | 102 | 147 | 281 | 326 | 3.17e-11 | 62.0 |
Msa0946940 | AT3G27580.1 | 54.348 | 46 | 21 | 0 | 102 | 147 | 281 | 326 | 3.17e-11 | 62.0 |
Msa0946940 | AT2G46070.3 | 33.333 | 108 | 53 | 4 | 85 | 185 | 152 | 247 | 3.31e-11 | 61.6 |
Msa0946940 | AT4G11330.1 | 35.652 | 115 | 54 | 5 | 85 | 191 | 120 | 222 | 3.31e-11 | 61.6 |
Msa0946940 | AT2G46070.1 | 33.333 | 108 | 53 | 4 | 85 | 185 | 118 | 213 | 3.48e-11 | 61.6 |
Msa0946940 | AT1G07880.2 | 32.456 | 114 | 59 | 4 | 85 | 191 | 110 | 212 | 3.62e-11 | 61.6 |
Msa0946940 | AT5G07070.1 | 32.374 | 139 | 72 | 4 | 52 | 186 | 64 | 184 | 3.62e-11 | 61.6 |
Msa0946940 | AT3G52890.2 | 58.140 | 43 | 18 | 0 | 105 | 147 | 640 | 682 | 4.30e-11 | 61.6 |
Msa0946940 | AT3G52890.4 | 58.140 | 43 | 18 | 0 | 105 | 147 | 640 | 682 | 4.30e-11 | 61.6 |
Msa0946940 | AT3G52890.1 | 58.140 | 43 | 18 | 0 | 105 | 147 | 640 | 682 | 4.30e-11 | 61.6 |
Msa0946940 | AT3G52890.3 | 58.140 | 43 | 18 | 0 | 105 | 147 | 640 | 682 | 4.30e-11 | 61.6 |
Msa0946940 | AT2G36350.1 | 53.191 | 47 | 22 | 0 | 101 | 147 | 657 | 703 | 7.12e-11 | 60.8 |
Find 90 sgRNAs with CRISPR-Local
Find 259 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TAGGATATGTTTAAGAAGTT+TGG | 0.187940 | 6_3:+29231396 | Msa0946940:exon |
CTTGAATACATACACAATTT+AGG | 0.247066 | 6_3:+29234859 | Msa0946940:CDS |
CGTATTAAAATAGCTGATTT+TGG | 0.256165 | 6_3:+29235010 | Msa0946940:CDS |
GCTGAATCAATAGATAATTC+TGG | 0.268082 | 6_3:+29231369 | Msa0946940:five_prime_UTR |
CATTTATCTGTTGGTGTTGT+TGG | 0.276113 | 6_3:+29232373 | Msa0946940:CDS |
AATAGATAATTCTGGATTAT+AGG | 0.293184 | 6_3:+29231377 | Msa0946940:five_prime_UTR |
CATTTGGAAGAACAGTAATT+TGG | 0.295079 | 6_3:-29235057 | None:intergenic |
CATGAACAGAAAAGGTAAAA+AGG | 0.301763 | 6_3:-29230917 | None:intergenic |
AGGATATGTTTAAGAAGTTT+GGG | 0.331309 | 6_3:+29231397 | Msa0946940:exon |
TTCTTCCTCCAATGGGCACT+TGG | 0.339252 | 6_3:+29235443 | Msa0946940:three_prime_UTR |
ATCTTACCTGATGTTGCATT+TGG | 0.339895 | 6_3:-29235073 | None:intergenic |
AATTCCTCCCCAGCAACCTT+TGG | 0.340697 | 6_3:+29235238 | Msa0946940:CDS |
AGTGATACATCGTGATATTA+AGG | 0.343328 | 6_3:+29234882 | Msa0946940:CDS |
AGAAAATGAAATATTTGAAA+TGG | 0.345193 | 6_3:+29231029 | Msa0946940:five_prime_UTR |
AAAGAAGAAGAAAGGAAGAA+TGG | 0.357982 | 6_3:-29230894 | None:intergenic |
AACAGTTACCCAAAGGTTGC+TGG | 0.366889 | 6_3:-29235247 | None:intergenic |
GATGCAAGGAAAAGTTGTAT+AGG | 0.376844 | 6_3:+29231236 | Msa0946940:five_prime_UTR |
TTTGATTATGAAACAATTCA+TGG | 0.380560 | 6_3:+29231143 | Msa0946940:five_prime_UTR |
GGGGAGGAATTAAGAACCTT+TGG | 0.387231 | 6_3:-29235226 | None:intergenic |
GGCACAAAACAACAGCAATA+AGG | 0.409954 | 6_3:-29235385 | None:intergenic |
TCTGGTAAATCACTCTGTTA+TGG | 0.415038 | 6_3:+29230829 | Msa0946940:five_prime_UTR |
ATTTATCTGTTGGTGTTGTT+GGG | 0.415431 | 6_3:+29232374 | Msa0946940:CDS |
ATGCAAGGAAAAGTTGTATA+GGG | 0.415708 | 6_3:+29231237 | Msa0946940:five_prime_UTR |
ATTCCTCCCCAGCAACCTTT+GGG | 0.416637 | 6_3:+29235239 | Msa0946940:CDS |
AAGAATCATTCTACATTGAA+TGG | 0.417107 | 6_3:+29231176 | Msa0946940:five_prime_UTR |
ACCCTTTCTGAACGATGAAA+AGG | 0.418177 | 6_3:-29230664 | None:intergenic |
GCATTGAGTGAGTATAGATC+TGG | 0.426514 | 6_3:-29230632 | None:intergenic |
AAGAAGAAGAAAGGAAGAAT+GGG | 0.431683 | 6_3:-29230893 | None:intergenic |
TTTGTAAGTAACAAGTTCTC+TGG | 0.437512 | 6_3:-29234980 | None:intergenic |
CATACACATAAATAATCTAA+TGG | 0.439518 | 6_3:-29235272 | None:intergenic |
TATAGGGAAAGTGTTTGTTA+AGG | 0.442025 | 6_3:+29231253 | Msa0946940:five_prime_UTR |
ACTCAACATACTCACAATAG+TGG | 0.458076 | 6_3:-29232425 | None:intergenic |
AAAGTTGTAATGTCTGAGGA+TGG | 0.469654 | 6_3:+29231435 | Msa0946940:CDS |
CCCTTTCTGAACGATGAAAA+GGG | 0.471436 | 6_3:-29230663 | None:intergenic |
TGACAAAGCCTGCACATTTG+TGG | 0.472740 | 6_3:+29235183 | Msa0946940:CDS |
ATCATCATCATGAACAGAAA+AGG | 0.477440 | 6_3:-29230925 | None:intergenic |
AACTTGTTACTTACAAATGA+AGG | 0.482816 | 6_3:+29234986 | Msa0946940:CDS |
ACAGTTACCCAAAGGTTGCT+GGG | 0.485457 | 6_3:-29235246 | None:intergenic |
AGCTGAGAGCTGGAGAGGTC+GGG | 0.488011 | 6_3:-29230760 | None:intergenic |
TGACTTTGTTCAATTTGAAA+CGG | 0.493045 | 6_3:+29231473 | Msa0946940:CDS |
TGGTAGTGTGGAGCCTATGC+AGG | 0.496258 | 6_3:+29235030 | Msa0946940:CDS |
TCTGAGGATGGGAAGAGTAA+AGG | 0.496947 | 6_3:+29231447 | Msa0946940:CDS |
GTTCTTCCAAATGCAACATC+AGG | 0.498162 | 6_3:+29235067 | Msa0946940:CDS |
TGAAACAATTCATGGGATTG+AGG | 0.498469 | 6_3:+29231151 | Msa0946940:five_prime_UTR |
CTCGCTTCAGACTCTTCCTC+TGG | 0.505954 | 6_3:+29230811 | Msa0946940:five_prime_UTR |
GTAATCGTGAAGCTGAGAGC+TGG | 0.508529 | 6_3:-29230770 | None:intergenic |
GATTAACGTAGAAGAAGGGC+TGG | 0.508782 | 6_3:+29231741 | Msa0946940:intron |
GACAAAGCCTGCACATTTGT+GGG | 0.514286 | 6_3:+29235184 | Msa0946940:CDS |
ACGGAGTGGCGGACGTAAAG+AGG | 0.518894 | 6_3:-29230695 | None:intergenic |
GAGAGCTGGAGAGGTCGGGA+TGG | 0.520385 | 6_3:-29230756 | None:intergenic |
TGCAGCCAAGTGCCCATTGG+AGG | 0.525071 | 6_3:-29235448 | None:intergenic |
GCTGCTATTGACAAGTTGAA+TGG | 0.525902 | 6_3:+29231510 | Msa0946940:CDS |
AGCAGTTCCCACAAATGTGC+AGG | 0.529337 | 6_3:-29235191 | None:intergenic |
AAGCTGAGAGCTGGAGAGGT+CGG | 0.532238 | 6_3:-29230761 | None:intergenic |
AAGCCGGAGTGGAGGACGAA+CGG | 0.537723 | 6_3:-29230714 | None:intergenic |
CTTTGTTCAATTTGAAACGG+AGG | 0.544236 | 6_3:+29231476 | Msa0946940:CDS |
GAGGAATTAAGAACCTTTGG+AGG | 0.546164 | 6_3:-29235223 | None:intergenic |
GCAAGATTAACGTAGAAGAA+GGG | 0.551102 | 6_3:+29231737 | Msa0946940:intron |
TTGATTATGAAACAATTCAT+GGG | 0.557113 | 6_3:+29231144 | Msa0946940:five_prime_UTR |
TGCAGAAAGTCGTCTAACTC+AGG | 0.570272 | 6_3:+29234798 | Msa0946940:intron |
TTACCCAAAGGTTGCTGGGG+AGG | 0.572330 | 6_3:-29235242 | None:intergenic |
AAGTGATGTTACCGTCGTGA+GGG | 0.572910 | 6_3:-29230870 | None:intergenic |
TCGCCGACGTAAAGAGAAGC+CGG | 0.580869 | 6_3:-29230730 | None:intergenic |
GTCGTGAGGGGAGAGGAAGT+TGG | 0.587229 | 6_3:-29230857 | None:intergenic |
CGTGAAGCTGAGAGCTGGAG+AGG | 0.588122 | 6_3:-29230765 | None:intergenic |
GTAATTTGGCTATCCTGCAT+AGG | 0.589689 | 6_3:-29235043 | None:intergenic |
AAGTTGTAATGTCTGAGGAT+GGG | 0.596291 | 6_3:+29231436 | Msa0946940:CDS |
TGCTGCTTATGTCCCTCCAA+AGG | 0.596642 | 6_3:+29235210 | Msa0946940:CDS |
ATGTGCAGCCAAGTGCCCAT+TGG | 0.598628 | 6_3:-29235451 | None:intergenic |
CATTGAGTGAGTATAGATCT+GGG | 0.603460 | 6_3:-29230631 | None:intergenic |
CAGTTACCCAAAGGTTGCTG+GGG | 0.604328 | 6_3:-29235245 | None:intergenic |
GTAAAGAGAAGCCGGAGTGG+AGG | 0.604844 | 6_3:-29230722 | None:intergenic |
TGTTACCGTCGTGAGGGGAG+AGG | 0.607063 | 6_3:-29230864 | None:intergenic |
GAAGTGATGTTACCGTCGTG+AGG | 0.611593 | 6_3:-29230871 | None:intergenic |
CACGTCGTGATCCTGATGCA+AGG | 0.624015 | 6_3:+29231222 | Msa0946940:five_prime_UTR |
GTGGAGGACGAACGGAGTGG+CGG | 0.628050 | 6_3:-29230706 | None:intergenic |
ATTAACGTAGAAGAAGGGCT+GGG | 0.630361 | 6_3:+29231742 | Msa0946940:intron |
AATGGTTAACAGTTACCCAA+AGG | 0.636705 | 6_3:-29235254 | None:intergenic |
AGGAATTAAGAACCTTTGGA+GGG | 0.639220 | 6_3:-29235222 | None:intergenic |
AAGTCGTCTAACTCAGGACG+AGG | 0.647592 | 6_3:+29234804 | Msa0946940:CDS |
GACGTAAAGAGAAGCCGGAG+TGG | 0.651903 | 6_3:-29230725 | None:intergenic |
AGTGATGTTACCGTCGTGAG+GGG | 0.653838 | 6_3:-29230869 | None:intergenic |
AGTGGCGGACGTAAAGAGGA+TGG | 0.655370 | 6_3:-29230691 | None:intergenic |
ACTCCGTTCGTCCTCCACTC+CGG | 0.656120 | 6_3:+29230711 | Msa0946940:five_prime_UTR |
AACTTCCTCTCCCCTCACGA+CGG | 0.672850 | 6_3:+29230859 | Msa0946940:five_prime_UTR |
ATAACAGAGTGATTTACCAG+AGG | 0.686118 | 6_3:-29230827 | None:intergenic |
AAGTAAAGTTGTAATGTCTG+AGG | 0.691055 | 6_3:+29231431 | Msa0946940:CDS |
AAGGTTATTACATAATGACC+TGG | 0.693349 | 6_3:-29235406 | None:intergenic |
ACTCCGGCTTCTCTTTACGT+CGG | 0.696128 | 6_3:+29230727 | Msa0946940:five_prime_UTR |
GGAGTGGAGGACGAACGGAG+TGG | 0.722260 | 6_3:-29230709 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAAAAAAATAATTAAATTTA+AGG | + | chr6_3:29231950-29231969 | Msa0946940:intron | 0.0% |
!!! | TTTATATTAATCTATTGTTT+TGG | + | chr6_3:29233700-29233719 | Msa0946940:intron | 10.0% |
!!! | TTATATTAATCTATTGTTTT+GGG | + | chr6_3:29233701-29233720 | Msa0946940:intron | 10.0% |
!! | AAGTAAAATATTAAATATAG+TGG | + | chr6_3:29234224-29234243 | Msa0946940:intron | 10.0% |
!! | ACTGTTAATATAAATAATAT+AGG | - | chr6_3:29234386-29234405 | None:intergenic | 10.0% |
!! | AAGAAAACAAAAAATATAAA+AGG | - | chr6_3:29235428-29235447 | None:intergenic | 10.0% |
!! | AGAAAATGAAATATTTGAAA+TGG | + | chr6_3:29231029-29231048 | Msa0946940:five_prime_UTR | 15.0% |
!! | AAAGTATAACAAAACAAATA+AGG | + | chr6_3:29233470-29233489 | Msa0946940:intron | 15.0% |
!! | TTGATATTATAGATAATATG+AGG | - | chr6_3:29233886-29233905 | None:intergenic | 15.0% |
!! | TAGAAATAATAGAATAAATC+TGG | - | chr6_3:29233974-29233993 | None:intergenic | 15.0% |
!! | TTTGATTATGAAACAATTCA+TGG | + | chr6_3:29231143-29231162 | Msa0946940:five_prime_UTR | 20.0% |
!! | TTGATTATGAAACAATTCAT+GGG | + | chr6_3:29231144-29231163 | Msa0946940:five_prime_UTR | 20.0% |
!!! | TTTATACTAGTGTTTTGTTT+AGG | + | chr6_3:29231300-29231319 | Msa0946940:intron | 20.0% |
!! | AATAGATAATTCTGGATTAT+AGG | + | chr6_3:29231377-29231396 | Msa0946940:five_prime_UTR | 20.0% |
!!! | AAAACATAATTTGTCAAAGA+TGG | - | chr6_3:29231815-29231834 | None:intergenic | 20.0% |
!!! | TAAATTTAAGGTTTTCTGAA+TGG | + | chr6_3:29231962-29231981 | Msa0946940:intron | 20.0% |
!!! | AAATTTAAGGTTTTCTGAAT+GGG | + | chr6_3:29231963-29231982 | Msa0946940:intron | 20.0% |
!!! | TAAAGCTTTTAGATTTTTCT+TGG | + | chr6_3:29232666-29232685 | Msa0946940:intron | 20.0% |
!!! | TGTTGAAATTGAAATTGTTT+TGG | + | chr6_3:29232844-29232863 | Msa0946940:intron | 20.0% |
!!! | GAGTTAAATTATAATTTGCA+AGG | + | chr6_3:29232942-29232961 | Msa0946940:intron | 20.0% |
!! | TATAATAGTATGCATGATAA+AGG | - | chr6_3:29233162-29233181 | None:intergenic | 20.0% |
!!! | TAGATTATTACTTTTTTGAG+TGG | - | chr6_3:29233196-29233215 | None:intergenic | 20.0% |
!! | TATAGGACTATAATATAACA+AGG | - | chr6_3:29233296-29233315 | None:intergenic | 20.0% |
!! | AAATAAACCTTAACTTTAAG+AGG | - | chr6_3:29233324-29233343 | None:intergenic | 20.0% |
!! | GTTATTGTTATAATAGTACA+TGG | - | chr6_3:29233449-29233468 | None:intergenic | 20.0% |
!! | AAATAAGGTTCATATTACAA+AGG | + | chr6_3:29233485-29233504 | Msa0946940:intron | 20.0% |
!!! | TATTCTTTTGTTTTCTTCTT+TGG | + | chr6_3:29233623-29233642 | Msa0946940:intron | 20.0% |
!! | TTAGTTTAATTAAGAGAAGT+AGG | + | chr6_3:29233923-29233942 | Msa0946940:intron | 20.0% |
!! | TAGTTTAATTAAGAGAAGTA+GGG | + | chr6_3:29233924-29233943 | Msa0946940:intron | 20.0% |
!!! | ATATCACTAGTATTTTAGAA+AGG | - | chr6_3:29234005-29234024 | None:intergenic | 20.0% |
!!! | GATTTGTTATTTATTCACAA+GGG | + | chr6_3:29234047-29234066 | Msa0946940:intron | 20.0% |
!! | AATCTTAAGAACAAAAATTC+AGG | - | chr6_3:29234463-29234482 | None:intergenic | 20.0% |
!! | CATACACATAAATAATCTAA+TGG | - | chr6_3:29235275-29235294 | None:intergenic | 20.0% |
! | TAAAAAGGAAAGAAGAAGAA+AGG | - | chr6_3:29230905-29230924 | None:intergenic | 25.0% |
! | AAAAAATGCAATTCAGTATC+AGG | - | chr6_3:29230976-29230995 | None:intergenic | 25.0% |
! | AAGAATCATTCTACATTGAA+TGG | + | chr6_3:29231176-29231195 | Msa0946940:five_prime_UTR | 25.0% |
!!! | TTAGGTTATTGTTTCTGAAA+TGG | + | chr6_3:29231318-29231337 | Msa0946940:intron | 25.0% |
!!! | TAGGTTATTGTTTCTGAAAT+GGG | + | chr6_3:29231319-29231338 | Msa0946940:intron | 25.0% |
! | TAGGATATGTTTAAGAAGTT+TGG | + | chr6_3:29231396-29231415 | Msa0946940:exon | 25.0% |
! | AGGATATGTTTAAGAAGTTT+GGG | + | chr6_3:29231397-29231416 | Msa0946940:exon | 25.0% |
! | TGACTTTGTTCAATTTGAAA+CGG | + | chr6_3:29231473-29231492 | Msa0946940:CDS | 25.0% |
! | AAATGCTTAAGATTTAACGA+TGG | - | chr6_3:29231665-29231684 | None:intergenic | 25.0% |
! | TGATGTAAGATGAAAAATGA+GGG | - | chr6_3:29231781-29231800 | None:intergenic | 25.0% |
! | TTGATGTAAGATGAAAAATG+AGG | - | chr6_3:29231782-29231801 | None:intergenic | 25.0% |
!! | TTTTCATCTTACATCAACAA+AGG | + | chr6_3:29231785-29231804 | Msa0946940:CDS | 25.0% |
!!! | TGATGTGTTGTTTTGTTATT+GGG | + | chr6_3:29231884-29231903 | Msa0946940:intron | 25.0% |
!! | GATATGAGCATATGATTTTA+TGG | + | chr6_3:29232034-29232053 | Msa0946940:intron | 25.0% |
! | AAAAGGAGATAGTTAATAGT+TGG | - | chr6_3:29232205-29232224 | None:intergenic | 25.0% |
! | TGTCATGAAGAAGAATTAAA+AGG | - | chr6_3:29232222-29232241 | None:intergenic | 25.0% |
!!! | ATGTTTTGTTGCCTTTATTT+TGG | + | chr6_3:29232307-29232326 | Msa0946940:intron | 25.0% |
!! | ATTTTGTTGCATTTATCTGT+TGG | + | chr6_3:29232364-29232383 | Msa0946940:CDS | 25.0% |
!!! | TTTATGTTCCTGCTATTTTT+TGG | + | chr6_3:29232459-29232478 | Msa0946940:intron | 25.0% |
!!! | TTATGTTCCTGCTATTTTTT+GGG | + | chr6_3:29232460-29232479 | Msa0946940:intron | 25.0% |
!!! | TTTTTTAATGTTTGCTTTCC+AGG | + | chr6_3:29232886-29232905 | Msa0946940:intron | 25.0% |
! | GTACTATTCTCAATTAAACA+TGG | - | chr6_3:29233015-29233034 | None:intergenic | 25.0% |
! | ACTATAATATAACAAGGTGA+TGG | - | chr6_3:29233290-29233309 | None:intergenic | 25.0% |
! | AGTAGGACTATAATATTACT+TGG | - | chr6_3:29233378-29233397 | None:intergenic | 25.0% |
! | AAAAAAAAAGCAGAAAGACA+CGG | - | chr6_3:29233755-29233774 | None:intergenic | 25.0% |
!!! | TGTCTTTCTGCTTTTTTTTT+TGG | + | chr6_3:29233755-29233774 | Msa0946940:intron | 25.0% |
!!! | GTCTTTCTGCTTTTTTTTTT+GGG | + | chr6_3:29233756-29233775 | Msa0946940:intron | 25.0% |
!!! | GGATTTGTTATTTATTCACA+AGG | + | chr6_3:29234046-29234065 | Msa0946940:intron | 25.0% |
!! | AAGTGCAATCATTCTTTTAT+TGG | - | chr6_3:29234488-29234507 | None:intergenic | 25.0% |
! | AATAAAAGAATGATTGCACT+TGG | + | chr6_3:29234487-29234506 | Msa0946940:intron | 25.0% |
!!! | TTTGGGAATTTTGATTTGTA+AGG | + | chr6_3:29234522-29234541 | Msa0946940:intron | 25.0% |
!!! | TTGGGAATTTTGATTTGTAA+GGG | + | chr6_3:29234523-29234542 | Msa0946940:intron | 25.0% |
! | CTTGAATACATACACAATTT+AGG | + | chr6_3:29234859-29234878 | Msa0946940:CDS | 25.0% |
!!! | AACTTGTTACTTACAAATGA+AGG | + | chr6_3:29234986-29235005 | Msa0946940:CDS | 25.0% |
!!! | CGTATTAAAATAGCTGATTT+TGG | + | chr6_3:29235010-29235029 | Msa0946940:CDS | 25.0% |
AAGAAGAAGAAAGGAAGAAT+GGG | - | chr6_3:29230896-29230915 | None:intergenic | 30.0% | |
AAAGAAGAAGAAAGGAAGAA+TGG | - | chr6_3:29230897-29230916 | None:intergenic | 30.0% | |
CATGAACAGAAAAGGTAAAA+AGG | - | chr6_3:29230920-29230939 | None:intergenic | 30.0% | |
ATCATCATCATGAACAGAAA+AGG | - | chr6_3:29230928-29230947 | None:intergenic | 30.0% | |
ATGCAAGGAAAAGTTGTATA+GGG | + | chr6_3:29231237-29231256 | Msa0946940:five_prime_UTR | 30.0% | |
!! | TATAGGGAAAGTGTTTGTTA+AGG | + | chr6_3:29231253-29231272 | Msa0946940:five_prime_UTR | 30.0% |
GCTGAATCAATAGATAATTC+TGG | + | chr6_3:29231369-29231388 | Msa0946940:five_prime_UTR | 30.0% | |
AAGTAAAGTTGTAATGTCTG+AGG | + | chr6_3:29231431-29231450 | Msa0946940:CDS | 30.0% | |
! | TTTAACGATGGTTTCTGAAA+CGG | - | chr6_3:29231653-29231672 | None:intergenic | 30.0% |
GATGTAAGATGAAAAATGAG+GGG | - | chr6_3:29231780-29231799 | None:intergenic | 30.0% | |
CAATAACAAAACAACACATC+AGG | - | chr6_3:29231885-29231904 | None:intergenic | 30.0% | |
!!! | CTGATGTGTTGTTTTGTTAT+TGG | + | chr6_3:29231883-29231902 | Msa0946940:intron | 30.0% |
TGAAACTATCTACATATACC+AGG | - | chr6_3:29232116-29232135 | None:intergenic | 30.0% | |
CTATGACAATCATGATAAGT+TGG | - | chr6_3:29232172-29232191 | None:intergenic | 30.0% | |
GCAGCAAAAAACCAAAATAA+AGG | - | chr6_3:29232321-29232340 | None:intergenic | 30.0% | |
!! | ATTTATCTGTTGGTGTTGTT+GGG | + | chr6_3:29232374-29232393 | Msa0946940:CDS | 30.0% |
! | GATTTCATATGTTGTTTGCT+TGG | + | chr6_3:29232711-29232730 | Msa0946940:intron | 30.0% |
TTATGCAACTAGTTCAAGTA+TGG | - | chr6_3:29232792-29232811 | None:intergenic | 30.0% | |
TACTTACATGATTTAGTACC+TGG | - | chr6_3:29232907-29232926 | None:intergenic | 30.0% | |
AAAACTTCATCAAGAAATGG+AGG | - | chr6_3:29232977-29232996 | None:intergenic | 30.0% | |
! | TCCATTTCTTGATGAAGTTT+TGG | + | chr6_3:29232976-29232995 | Msa0946940:intron | 30.0% |
ACCAAAACTTCATCAAGAAA+TGG | - | chr6_3:29232980-29232999 | None:intergenic | 30.0% | |
TCTCAATTAAACATGGCTAT+TGG | - | chr6_3:29233008-29233027 | None:intergenic | 30.0% | |
! | GTGGTTGCATATATTTTACA+AGG | - | chr6_3:29233096-29233115 | None:intergenic | 30.0% |
!! | AAAGGTCTACGTGTTTTTAT+AGG | - | chr6_3:29233144-29233163 | None:intergenic | 30.0% |
!!! | TATTACTTTTTTGAGTGGCA+CGG | - | chr6_3:29233191-29233210 | None:intergenic | 30.0% |
! | AAGCACAAAAGTCTTTTTCT+AGG | - | chr6_3:29233240-29233259 | None:intergenic | 30.0% |
! | AACTTTAAGAGGCAACATAT+AGG | - | chr6_3:29233313-29233332 | None:intergenic | 30.0% |
TATGTTGCCTCTTAAAGTTA+AGG | + | chr6_3:29233314-29233333 | Msa0946940:intron | 30.0% | |
AGGAAAACAGAACAATGTAA+AGG | + | chr6_3:29233505-29233524 | Msa0946940:intron | 30.0% | |
! | AGATTGATTGCTATTCTCTA+AGG | + | chr6_3:29233650-29233669 | Msa0946940:intron | 30.0% |
TCAAATATGCTAGTAAGCTA+TGG | + | chr6_3:29234120-29234139 | Msa0946940:intron | 30.0% | |
!!! | GAATCTTTTAACTTGTAGTC+AGG | - | chr6_3:29234168-29234187 | None:intergenic | 30.0% |
! | AATTCAGGAGCATATATACT+AGG | - | chr6_3:29234448-29234467 | None:intergenic | 30.0% |
GAAACAATATATCTCAATGC+AGG | - | chr6_3:29234669-29234688 | None:intergenic | 30.0% | |
!! | TTGTTTCTTGATAGCTTTTG+TGG | + | chr6_3:29234682-29234701 | Msa0946940:intron | 30.0% |
! | GATAGCTTTTGTGGTATTTT+TGG | + | chr6_3:29234691-29234710 | Msa0946940:intron | 30.0% |
AGTGATACATCGTGATATTA+AGG | + | chr6_3:29234882-29234901 | Msa0946940:CDS | 30.0% | |
TACTGCATTATTGCCATATA+TGG | + | chr6_3:29234924-29234943 | Msa0946940:intron | 30.0% | |
TTTGTAAGTAACAAGTTCTC+TGG | - | chr6_3:29234983-29235002 | None:intergenic | 30.0% | |
CATTTGGAAGAACAGTAATT+TGG | - | chr6_3:29235060-29235079 | None:intergenic | 30.0% | |
AAGGTTATTACATAATGACC+TGG | - | chr6_3:29235409-29235428 | None:intergenic | 30.0% | |
!!! | TTTTTGTTTTCTTCCTCCAA+TGG | + | chr6_3:29235435-29235454 | Msa0946940:three_prime_UTR | 30.0% |
!!! | TTTTGTTTTCTTCCTCCAAT+GGG | + | chr6_3:29235436-29235455 | Msa0946940:three_prime_UTR | 30.0% |
CATTGAGTGAGTATAGATCT+GGG | - | chr6_3:29230634-29230653 | None:intergenic | 35.0% | |
!! | AACGATGAAAAGGGTTTTGA+TGG | - | chr6_3:29230657-29230676 | None:intergenic | 35.0% |
ATAACAGAGTGATTTACCAG+AGG | - | chr6_3:29230830-29230849 | None:intergenic | 35.0% | |
TCTGGTAAATCACTCTGTTA+TGG | + | chr6_3:29230829-29230848 | Msa0946940:five_prime_UTR | 35.0% | |
TGAAACAATTCATGGGATTG+AGG | + | chr6_3:29231151-29231170 | Msa0946940:five_prime_UTR | 35.0% | |
! | ATACAACTTTTCCTTGCATC+AGG | - | chr6_3:29231236-29231255 | None:intergenic | 35.0% |
GATGCAAGGAAAAGTTGTAT+AGG | + | chr6_3:29231236-29231255 | Msa0946940:five_prime_UTR | 35.0% | |
AAAGTTGTAATGTCTGAGGA+TGG | + | chr6_3:29231435-29231454 | Msa0946940:CDS | 35.0% | |
AAGTTGTAATGTCTGAGGAT+GGG | + | chr6_3:29231436-29231455 | Msa0946940:CDS | 35.0% | |
! | CTTTGTTCAATTTGAAACGG+AGG | + | chr6_3:29231476-29231495 | Msa0946940:CDS | 35.0% |
TGCAAGATTAACGTAGAAGA+AGG | + | chr6_3:29231736-29231755 | Msa0946940:intron | 35.0% | |
GCAAGATTAACGTAGAAGAA+GGG | + | chr6_3:29231737-29231756 | Msa0946940:intron | 35.0% | |
CATATGCTCATATCATGACA+TGG | - | chr6_3:29232028-29232047 | None:intergenic | 35.0% | |
TATGATGACTTATCATGTCC+TGG | + | chr6_3:29232095-29232114 | Msa0946940:intron | 35.0% | |
!! | CATTTATCTGTTGGTGTTGT+TGG | + | chr6_3:29232373-29232392 | Msa0946940:CDS | 35.0% |
ACTCAACATACTCACAATAG+TGG | - | chr6_3:29232428-29232447 | None:intergenic | 35.0% | |
TAGCAGGAACATAAAACAAG+TGG | - | chr6_3:29232454-29232473 | None:intergenic | 35.0% | |
TTAGTGACCCAAAAAATAGC+AGG | - | chr6_3:29232470-29232489 | None:intergenic | 35.0% | |
GTTGCATAAGATGATGAATG+TGG | + | chr6_3:29232803-29232822 | Msa0946940:intron | 35.0% | |
! | GTAAGTATTAACAGAAGTGC+TGG | + | chr6_3:29232920-29232939 | Msa0946940:intron | 35.0% |
TTCATCAAGAAATGGAGGTA+AGG | - | chr6_3:29232972-29232991 | None:intergenic | 35.0% | |
!! | CTAAGGTCACATGTTTTTGT+AGG | - | chr6_3:29233118-29233137 | None:intergenic | 35.0% |
ACATGGATTCCTAGATCTTA+CGG | - | chr6_3:29233432-29233451 | None:intergenic | 35.0% | |
! | CAAGGAAAAAAGTTCTGGTA+GGG | + | chr6_3:29233566-29233585 | Msa0946940:intron | 35.0% |
TAGCTGAAGTATGATTCACA+AGG | + | chr6_3:29234024-29234043 | Msa0946940:intron | 35.0% | |
AGCTGAAGTATGATTCACAA+GGG | + | chr6_3:29234025-29234044 | Msa0946940:intron | 35.0% | |
GTGACAATGTGGTTGTATTT+GGG | + | chr6_3:29234142-29234161 | Msa0946940:intron | 35.0% | |
AGAAACCTCTACGATTAACA+CGG | - | chr6_3:29234419-29234438 | None:intergenic | 35.0% | |
ACTTGGCAGTAACTTCTATT+TGG | + | chr6_3:29234504-29234523 | Msa0946940:intron | 35.0% | |
CTTGGCAGTAACTTCTATTT+GGG | + | chr6_3:29234505-29234524 | Msa0946940:intron | 35.0% | |
! | GGGAAAGATTCTTTAAAGAG+TGG | - | chr6_3:29234620-29234639 | None:intergenic | 35.0% |
ATTCAGTAACGAGCATTAGA+AGG | - | chr6_3:29234743-29234762 | None:intergenic | 35.0% | |
CACACAGGAAATCAAAAGTT+TGG | - | chr6_3:29234780-29234799 | None:intergenic | 35.0% | |
GATACATCGTGATATTAAGG+TGG | + | chr6_3:29234885-29234904 | Msa0946940:intron | 35.0% | |
! | TGATATTAAGGTGGCTCTAT+GGG | + | chr6_3:29234894-29234913 | Msa0946940:intron | 35.0% |
! | TTTTCGCACATAGCCATATA+TGG | - | chr6_3:29234940-29234959 | None:intergenic | 35.0% |
!!! | AATAGCTGATTTTGGTAGTG+TGG | + | chr6_3:29235018-29235037 | Msa0946940:CDS | 35.0% |
ATCTTACCTGATGTTGCATT+TGG | - | chr6_3:29235076-29235095 | None:intergenic | 35.0% | |
AATGCAACATCAGGTAAGAT+AGG | + | chr6_3:29235076-29235095 | Msa0946940:intron | 35.0% | |
AGGAATTAAGAACCTTTGGA+GGG | - | chr6_3:29235225-29235244 | None:intergenic | 35.0% | |
AATGGTTAACAGTTACCCAA+AGG | - | chr6_3:29235257-29235276 | None:intergenic | 35.0% | |
GCATTGAGTGAGTATAGATC+TGG | - | chr6_3:29230635-29230654 | None:intergenic | 40.0% | |
! | ACCCTTTTCATCGTTCAGAA+AGG | + | chr6_3:29230662-29230681 | Msa0946940:five_prime_UTR | 40.0% |
CCCTTTCTGAACGATGAAAA+GGG | - | chr6_3:29230666-29230685 | None:intergenic | 40.0% | |
! | CCCTTTTCATCGTTCAGAAA+GGG | + | chr6_3:29230663-29230682 | Msa0946940:five_prime_UTR | 40.0% |
ACCCTTTCTGAACGATGAAA+AGG | - | chr6_3:29230667-29230686 | None:intergenic | 40.0% | |
! | GCTGCTATTGACAAGTTGAA+TGG | + | chr6_3:29231510-29231529 | Msa0946940:CDS | 40.0% |
ATTAACGTAGAAGAAGGGCT+GGG | + | chr6_3:29231742-29231761 | Msa0946940:intron | 40.0% | |
TTAAAAGGTGGTCACAACTG+AGG | + | chr6_3:29232567-29232586 | Msa0946940:intron | 40.0% | |
TAAAAGGTGGTCACAACTGA+GGG | + | chr6_3:29232568-29232587 | Msa0946940:intron | 40.0% | |
! | AGAGTACCTGCTGAAGTTTA+AGG | + | chr6_3:29232629-29232648 | Msa0946940:intron | 40.0% |
GAGTACCTGCTGAAGTTTAA+GGG | + | chr6_3:29232630-29232649 | Msa0946940:intron | 40.0% | |
TTTGTCCCTTAAACTTCAGC+AGG | - | chr6_3:29232638-29232657 | None:intergenic | 40.0% | |
!! | AGGTCACATGTTTTTGTAGG+TGG | - | chr6_3:29233115-29233134 | None:intergenic | 40.0% |
!! | CGTGTTTTTATAGGTGGCTA+AGG | - | chr6_3:29233135-29233154 | None:intergenic | 40.0% |
!! | GGTCTACGTGTTTTTATAGG+TGG | - | chr6_3:29233141-29233160 | None:intergenic | 40.0% |
CTAGTAGGTAGTAGGTTAGT+AGG | - | chr6_3:29233395-29233414 | None:intergenic | 40.0% | |
GACTGCAAGGAAAAAAGTTC+TGG | + | chr6_3:29233561-29233580 | Msa0946940:intron | 40.0% | |
! | GCAAGGAAAAAAGTTCTGGT+AGG | + | chr6_3:29233565-29233584 | Msa0946940:intron | 40.0% |
AGAAAGACACGGACATTTGT+GGG | - | chr6_3:29233744-29233763 | None:intergenic | 40.0% | |
AGTAAGCTATGGTGACAATG+TGG | + | chr6_3:29234131-29234150 | Msa0946940:intron | 40.0% | |
GGTGACAATGTGGTTGTATT+TGG | + | chr6_3:29234141-29234160 | Msa0946940:intron | 40.0% | |
TAAGGGAGATTCTTCTGTGA+TGG | + | chr6_3:29234540-29234559 | Msa0946940:intron | 40.0% | |
TCCTGCTCTGTGAAATGAAT+GGG | - | chr6_3:29234640-29234659 | None:intergenic | 40.0% | |
TTCCTGCTCTGTGAAATGAA+TGG | - | chr6_3:29234641-29234660 | None:intergenic | 40.0% | |
! | GTGATATTAAGGTGGCTCTA+TGG | + | chr6_3:29234893-29234912 | Msa0946940:intron | 40.0% |
GTAATTTGGCTATCCTGCAT+AGG | - | chr6_3:29235046-29235065 | None:intergenic | 40.0% | |
GTTCTTCCAAATGCAACATC+AGG | + | chr6_3:29235067-29235086 | Msa0946940:CDS | 40.0% | |
TCAGGTAAGATAGGAGCAAA+TGG | + | chr6_3:29235085-29235104 | Msa0946940:intron | 40.0% | |
GAGGAATTAAGAACCTTTGG+AGG | - | chr6_3:29235226-29235245 | None:intergenic | 40.0% | |
GGCACAAAACAACAGCAATA+AGG | - | chr6_3:29235388-29235407 | None:intergenic | 40.0% | |
!!! | TATTGCTGTTGTTTTGTGCC+AGG | + | chr6_3:29235388-29235407 | Msa0946940:three_prime_UTR | 40.0% |
AAGTGATGTTACCGTCGTGA+GGG | - | chr6_3:29230873-29230892 | None:intergenic | 45.0% | |
TCTGAGGATGGGAAGAGTAA+AGG | + | chr6_3:29231447-29231466 | Msa0946940:CDS | 45.0% | |
!! | AACGATGGTTTCTGAAACGG+CGG | - | chr6_3:29231650-29231669 | None:intergenic | 45.0% |
GATTAACGTAGAAGAAGGGC+TGG | + | chr6_3:29231741-29231760 | Msa0946940:intron | 45.0% | |
CTTGCTCACTTATGCTCTTG+TGG | - | chr6_3:29232260-29232279 | None:intergenic | 45.0% | |
!!! | GACTCAACTAGCTTTTCGTG+AGG | + | chr6_3:29232528-29232547 | Msa0946940:intron | 45.0% |
!!! | AACTAGCTTTTCGTGAGGCA+GGG | + | chr6_3:29232533-29232552 | Msa0946940:intron | 45.0% |
! | AGGGGTCGAGTTGTCTTAAA+AGG | + | chr6_3:29232552-29232571 | Msa0946940:intron | 45.0% |
! | GGTCGAGTTGTCTTAAAAGG+TGG | + | chr6_3:29232555-29232574 | Msa0946940:intron | 45.0% |
AAAAGGTGGTCACAACTGAG+GGG | + | chr6_3:29232569-29232588 | Msa0946940:intron | 45.0% | |
GCAGGTACTCTAGTAAGTCA+TGG | - | chr6_3:29232620-29232639 | None:intergenic | 45.0% | |
GTGTGTAGAGATAGAGTCAC+AGG | - | chr6_3:29233356-29233375 | None:intergenic | 45.0% | |
GCAAGTGACTAGTAGGTAGT+AGG | - | chr6_3:29233403-29233422 | None:intergenic | 45.0% | |
TTCCTAGATCTTACGGCATG+TGG | - | chr6_3:29233425-29233444 | None:intergenic | 45.0% | |
TCCAGATGAAGTTGACTGCA+AGG | + | chr6_3:29233548-29233567 | Msa0946940:intron | 45.0% | |
TCCTTGCAGTCAACTTCATC+TGG | - | chr6_3:29233552-29233571 | None:intergenic | 45.0% | |
CAGAAAGACACGGACATTTG+TGG | - | chr6_3:29233745-29233764 | None:intergenic | 45.0% | |
GAGATTCTTCTGTGATGGTC+TGG | + | chr6_3:29234545-29234564 | Msa0946940:intron | 45.0% | |
TCCCATTCATTTCACAGAGC+AGG | + | chr6_3:29234636-29234655 | Msa0946940:intron | 45.0% | |
TTAGACGACTTTCTGCACAC+AGG | - | chr6_3:29234795-29234814 | None:intergenic | 45.0% | |
TGCAGAAAGTCGTCTAACTC+AGG | + | chr6_3:29234798-29234817 | Msa0946940:intron | 45.0% | |
! | ATTAAGGTGGCTCTATGGGA+TGG | + | chr6_3:29234898-29234917 | Msa0946940:intron | 45.0% |
TGACAAAGCCTGCACATTTG+TGG | + | chr6_3:29235183-29235202 | Msa0946940:CDS | 45.0% | |
GACAAAGCCTGCACATTTGT+GGG | + | chr6_3:29235184-29235203 | Msa0946940:CDS | 45.0% | |
GGGGAGGAATTAAGAACCTT+TGG | - | chr6_3:29235229-29235248 | None:intergenic | 45.0% | |
ACAGTTACCCAAAGGTTGCT+GGG | - | chr6_3:29235249-29235268 | None:intergenic | 45.0% | |
AACAGTTACCCAAAGGTTGC+TGG | - | chr6_3:29235250-29235269 | None:intergenic | 45.0% | |
ACTCCGGCTTCTCTTTACGT+CGG | + | chr6_3:29230727-29230746 | Msa0946940:five_prime_UTR | 50.0% | |
GTAATCGTGAAGCTGAGAGC+TGG | - | chr6_3:29230773-29230792 | None:intergenic | 50.0% | |
AGTGATGTTACCGTCGTGAG+GGG | - | chr6_3:29230872-29230891 | None:intergenic | 50.0% | |
GAAGTGATGTTACCGTCGTG+AGG | - | chr6_3:29230874-29230893 | None:intergenic | 50.0% | |
!!! | CAACTAGCTTTTCGTGAGGC+AGG | + | chr6_3:29232532-29232551 | Msa0946940:intron | 50.0% |
!!! | ACTAGCTTTTCGTGAGGCAG+GGG | + | chr6_3:29232534-29232553 | Msa0946940:intron | 50.0% |
GCATGTGGCAAGTGACTAGT+AGG | - | chr6_3:29233410-29233429 | None:intergenic | 50.0% | |
TGCCACATGCCGTAAGATCT+AGG | + | chr6_3:29233420-29233439 | Msa0946940:intron | 50.0% | |
! | TAGTGAGCGTGTCTTGGTGT+CGG | - | chr6_3:29233832-29233851 | None:intergenic | 50.0% |
TGCTTGTAGTGAGCGTGTCT+TGG | - | chr6_3:29233838-29233857 | None:intergenic | 50.0% | |
!! | GGAACGAGAACTCTGAAGCA+TGG | - | chr6_3:29233865-29233884 | None:intergenic | 50.0% |
CGTGTCCGTGTTAATCGTAG+AGG | + | chr6_3:29234411-29234430 | Msa0946940:intron | 50.0% | |
AAGTCGTCTAACTCAGGACG+AGG | + | chr6_3:29234804-29234823 | Msa0946940:CDS | 50.0% | |
AGCAGTTCCCACAAATGTGC+AGG | - | chr6_3:29235194-29235213 | None:intergenic | 50.0% | |
! | TGCTGCTTATGTCCCTCCAA+AGG | + | chr6_3:29235210-29235229 | Msa0946940:CDS | 50.0% |
AATTCCTCCCCAGCAACCTT+TGG | + | chr6_3:29235238-29235257 | Msa0946940:CDS | 50.0% | |
ATTCCTCCCCAGCAACCTTT+GGG | + | chr6_3:29235239-29235258 | Msa0946940:CDS | 50.0% | |
CAGTTACCCAAAGGTTGCTG+GGG | - | chr6_3:29235248-29235267 | None:intergenic | 50.0% | |
TTCTTCCTCCAATGGGCACT+TGG | + | chr6_3:29235443-29235462 | Msa0946940:three_prime_UTR | 50.0% | |
!! | AGTGGCGGACGTAAAGAGGA+TGG | - | chr6_3:29230694-29230713 | None:intergenic | 55.0% |
GTAAAGAGAAGCCGGAGTGG+AGG | - | chr6_3:29230725-29230744 | None:intergenic | 55.0% | |
GACGTAAAGAGAAGCCGGAG+TGG | - | chr6_3:29230728-29230747 | None:intergenic | 55.0% | |
TCGCCGACGTAAAGAGAAGC+CGG | - | chr6_3:29230733-29230752 | None:intergenic | 55.0% | |
AAGCTGAGAGCTGGAGAGGT+CGG | - | chr6_3:29230764-29230783 | None:intergenic | 55.0% | |
CTCGCTTCAGACTCTTCCTC+TGG | + | chr6_3:29230811-29230830 | Msa0946940:five_prime_UTR | 55.0% | |
AACTTCCTCTCCCCTCACGA+CGG | + | chr6_3:29230859-29230878 | Msa0946940:five_prime_UTR | 55.0% | |
CACGTCGTGATCCTGATGCA+AGG | + | chr6_3:29231222-29231241 | Msa0946940:five_prime_UTR | 55.0% | |
AGACACGGACATTTGTGGGC+TGG | - | chr6_3:29233740-29233759 | None:intergenic | 55.0% | |
AGCATCCGACACGTGTCGTA+CGG | + | chr6_3:29233791-29233810 | Msa0946940:intron | 55.0% | |
! | TGGTAGTGTGGAGCCTATGC+AGG | + | chr6_3:29235030-29235049 | Msa0946940:CDS | 55.0% |
TTACCCAAAGGTTGCTGGGG+AGG | - | chr6_3:29235245-29235264 | None:intergenic | 55.0% | |
!! | ACGGAGTGGCGGACGTAAAG+AGG | - | chr6_3:29230698-29230717 | None:intergenic | 60.0% |
ACTCCGTTCGTCCTCCACTC+CGG | + | chr6_3:29230711-29230730 | Msa0946940:five_prime_UTR | 60.0% | |
AAGCCGGAGTGGAGGACGAA+CGG | - | chr6_3:29230717-29230736 | None:intergenic | 60.0% | |
AGCTGAGAGCTGGAGAGGTC+GGG | - | chr6_3:29230763-29230782 | None:intergenic | 60.0% | |
CGTGAAGCTGAGAGCTGGAG+AGG | - | chr6_3:29230768-29230787 | None:intergenic | 60.0% | |
GTCGTGAGGGGAGAGGAAGT+TGG | - | chr6_3:29230860-29230879 | None:intergenic | 60.0% | |
TGTTACCGTCGTGAGGGGAG+AGG | - | chr6_3:29230867-29230886 | None:intergenic | 60.0% | |
!! | ACGGACATTTGTGGGCTGGC+AGG | - | chr6_3:29233736-29233755 | None:intergenic | 60.0% |
GTACGACACGTGTCGGATGC+TGG | - | chr6_3:29233792-29233811 | None:intergenic | 60.0% | |
GCATCCGACACGTGTCGTAC+GGG | + | chr6_3:29233792-29233811 | Msa0946940:intron | 60.0% | |
GACACCCGTACGACACGTGT+CGG | - | chr6_3:29233799-29233818 | None:intergenic | 60.0% | |
!! | GTGTCTTGGTGTCGGACACG+CGG | - | chr6_3:29233824-29233843 | None:intergenic | 60.0% |
GTGGAGGACGAACGGAGTGG+CGG | - | chr6_3:29230709-29230728 | None:intergenic | 65.0% | |
GGAGTGGAGGACGAACGGAG+TGG | - | chr6_3:29230712-29230731 | None:intergenic | 65.0% | |
GAGAGCTGGAGAGGTCGGGA+TGG | - | chr6_3:29230759-29230778 | None:intergenic | 65.0% | |
ACGTGTCGGATGCTGGTGGC+AGG | - | chr6_3:29233785-29233804 | None:intergenic | 65.0% | |
CGACACGTGTCGGATGCTGG+TGG | - | chr6_3:29233789-29233808 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6_3 | gene | 29230629 | 29235469 | 29230629 | ID=Msa0946940;Name=Msa0946940 |
chr6_3 | mRNA | 29230629 | 29235469 | 29230629 | ID=Msa0946940-mRNA-1;Parent=Msa0946940;Name=Msa0946940-mRNA-1;_AED=0.14;_eAED=0.14;_QI=685|0.5|0.71|0.85|0.83|0.71|7|205|193 |
chr6_3 | exon | 29230629 | 29231274 | 29230629 | ID=Msa0946940-mRNA-1:exon:7730;Parent=Msa0946940-mRNA-1 |
chr6_3 | exon | 29231363 | 29231556 | 29231363 | ID=Msa0946940-mRNA-1:exon:7731;Parent=Msa0946940-mRNA-1 |
chr6_3 | exon | 29231752 | 29231806 | 29231752 | ID=Msa0946940-mRNA-1:exon:7732;Parent=Msa0946940-mRNA-1 |
chr6_3 | exon | 29232358 | 29232436 | 29232358 | ID=Msa0946940-mRNA-1:exon:7733;Parent=Msa0946940-mRNA-1 |
chr6_3 | exon | 29234803 | 29234903 | 29234803 | ID=Msa0946940-mRNA-1:exon:7734;Parent=Msa0946940-mRNA-1 |
chr6_3 | exon | 29234980 | 29235088 | 29234980 | ID=Msa0946940-mRNA-1:exon:7735;Parent=Msa0946940-mRNA-1 |
chr6_3 | exon | 29235182 | 29235469 | 29235182 | ID=Msa0946940-mRNA-1:exon:7736;Parent=Msa0946940-mRNA-1 |
chr6_3 | five_prime_UTR | 29230629 | 29231274 | 29230629 | ID=Msa0946940-mRNA-1:five_prime_utr;Parent=Msa0946940-mRNA-1 |
chr6_3 | five_prime_UTR | 29231363 | 29231401 | 29231363 | ID=Msa0946940-mRNA-1:five_prime_utr;Parent=Msa0946940-mRNA-1 |
chr6_3 | CDS | 29231402 | 29231556 | 29231402 | ID=Msa0946940-mRNA-1:cds;Parent=Msa0946940-mRNA-1 |
chr6_3 | CDS | 29231752 | 29231806 | 29231752 | ID=Msa0946940-mRNA-1:cds;Parent=Msa0946940-mRNA-1 |
chr6_3 | CDS | 29232358 | 29232436 | 29232358 | ID=Msa0946940-mRNA-1:cds;Parent=Msa0946940-mRNA-1 |
chr6_3 | CDS | 29234803 | 29234903 | 29234803 | ID=Msa0946940-mRNA-1:cds;Parent=Msa0946940-mRNA-1 |
chr6_3 | CDS | 29234980 | 29235088 | 29234980 | ID=Msa0946940-mRNA-1:cds;Parent=Msa0946940-mRNA-1 |
chr6_3 | CDS | 29235182 | 29235264 | 29235182 | ID=Msa0946940-mRNA-1:cds;Parent=Msa0946940-mRNA-1 |
chr6_3 | three_prime_UTR | 29235265 | 29235469 | 29235265 | ID=Msa0946940-mRNA-1:three_prime_utr;Parent=Msa0946940-mRNA-1 |
Gene Sequence |
Protein sequence |