AlfalfaGEDB | Msa0946940

M. sativa cultivar zhongmu-4 / Msa0946940

KEGG: K06276
GO: GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008289 GO:0009893 GO:0009987 GO:0010562 GO:0010604 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019220 GO:0019222 GO:0019538 GO:0023052 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0033674 GO:0035091 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0070300 GO:0071704 GO:0071944 GO:0080090 GO:0140096 GO:1901564
PFAM: PF00076.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0946940	KEH43367.1	89.423	104	10	1	91	193	11	114	1.33e-56	192

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0946940	sp\|Q9XF67\|PDPK1_ARATH	61.677	167	51	4	28	193	78	232	5.46e-57	189

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0946940	A0A072VNL2	89.423	104	10	1	91	193	11	114	6.37e-57	192

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0946940	MtrunA17_Chr1g0197721	64.072	167	47	4	28	193	85	239	1.32e-59	193
Msa0946940	MtrunA17_Chr7g0265341	92.308	52	4	0	1	52	177	228	8.08e-25	100
Msa0946940	MtrunA17_Chr4g0013131	40.367	109	49	3	85	186	85	184	6.16e-18	80.9
Msa0946940	MtrunA17_Chr2g0304111	38.017	121	56	4	69	187	94	197	2.19e-17	79.3
Msa0946940	MtrunA17_Chr8g0379091	35.211	142	64	4	52	186	78	198	4.68e-17	78.6
Msa0946940	MtrunA17_Chr4g0001331	33.566	143	74	4	50	185	63	191	4.70e-17	78.2
Msa0946940	MtrunA17_Chr4g0074111	42.105	95	47	1	91	185	103	189	4.85e-17	78.2
Msa0946940	MtrunA17_Chr5g0428031	35.526	152	71	6	51	190	53	189	7.76e-17	77.8
Msa0946940	MtrunA17_Chr7g0244521	35.758	165	74	7	35	186	39	184	7.84e-17	77.8
Msa0946940	MtrunA17_Chr2g0284031	36.496	137	67	5	52	185	83	202	8.70e-17	77.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0946940	AT5G04510.3	61.677	167	51	4	28	193	78	232	4.01e-60	190
Msa0946940	AT5G04510.2	61.677	167	51	4	28	193	78	232	1.42e-58	189
Msa0946940	AT5G04510.1	61.677	167	51	4	28	193	78	232	5.55e-58	189
Msa0946940	AT3G10540.1	61.078	167	52	4	28	193	79	233	1.83e-57	188
Msa0946940	AT1G29230.1	31.737	167	76	6	40	186	98	246	9.67e-20	86.7
Msa0946940	AT2G26980.2	37.838	148	64	6	50	186	57	187	3.49e-18	80.1
Msa0946940	AT2G26980.1	37.838	148	64	6	50	186	57	187	4.54e-18	81.3
Msa0946940	AT2G26980.4	37.838	148	64	6	50	186	67	197	5.23e-18	81.3
Msa0946940	AT2G26980.3	37.838	148	64	6	50	186	57	187	5.35e-18	81.3
Msa0946940	AT2G26980.5	37.838	148	64	6	50	186	57	187	5.56e-18	81.3

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Find 90 sgRNAs with CRISPR-Local

Find 259 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAGAAGAAAGGAAGAA+TGG	0.357982	6_3:-29230894	None:intergenic
AAAGTTGTAATGTCTGAGGA+TGG	0.469654	6_3:+29231435	Msa0946940:CDS
AACAGTTACCCAAAGGTTGC+TGG	0.366889	6_3:-29235247	None:intergenic
AACTTCCTCTCCCCTCACGA+CGG	0.672850	6_3:+29230859	Msa0946940:five_prime_UTR
AACTTGTTACTTACAAATGA+AGG	0.482816	6_3:+29234986	Msa0946940:CDS
AAGAAGAAGAAAGGAAGAAT+GGG	0.431683	6_3:-29230893	None:intergenic
AAGAATCATTCTACATTGAA+TGG	0.417107	6_3:+29231176	Msa0946940:five_prime_UTR
AAGCCGGAGTGGAGGACGAA+CGG	0.537723	6_3:-29230714	None:intergenic
AAGCTGAGAGCTGGAGAGGT+CGG	0.532238	6_3:-29230761	None:intergenic
AAGGTTATTACATAATGACC+TGG	0.693349	6_3:-29235406	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAAGAAGAAAGGAAGAAT+GGG	-	chr6_3:29230896-29230915	None:intergenic	30.0%
AAAGAAGAAGAAAGGAAGAA+TGG	-	chr6_3:29230897-29230916	None:intergenic	30.0%
CATGAACAGAAAAGGTAAAA+AGG	-	chr6_3:29230920-29230939	None:intergenic	30.0%
ATCATCATCATGAACAGAAA+AGG	-	chr6_3:29230928-29230947	None:intergenic	30.0%
ATGCAAGGAAAAGTTGTATA+GGG	+	chr6_3:29231237-29231256	Msa0946940:five_prime_UTR	30.0%
GCTGAATCAATAGATAATTC+TGG	+	chr6_3:29231369-29231388	Msa0946940:five_prime_UTR	30.0%
AAGTAAAGTTGTAATGTCTG+AGG	+	chr6_3:29231431-29231450	Msa0946940:CDS	30.0%
GATGTAAGATGAAAAATGAG+GGG	-	chr6_3:29231780-29231799	None:intergenic	30.0%
CAATAACAAAACAACACATC+AGG	-	chr6_3:29231885-29231904	None:intergenic	30.0%
TGAAACTATCTACATATACC+AGG	-	chr6_3:29232116-29232135	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_3	gene	29230629	29235469	29230629	ID=Msa0946940;Name=Msa0946940
chr6_3	mRNA	29230629	29235469	29230629	ID=Msa0946940-mRNA-1;Parent=Msa0946940;Name=Msa0946940-mRNA-1;_AED=0.14;_eAED=0.14;_QI=685\|0.5\|0.71\|0.85\|0.83\|0.71\|7\|205\|193
chr6_3	exon	29230629	29231274	29230629	ID=Msa0946940-mRNA-1:exon:7730;Parent=Msa0946940-mRNA-1
chr6_3	exon	29231363	29231556	29231363	ID=Msa0946940-mRNA-1:exon:7731;Parent=Msa0946940-mRNA-1
chr6_3	exon	29231752	29231806	29231752	ID=Msa0946940-mRNA-1:exon:7732;Parent=Msa0946940-mRNA-1
chr6_3	exon	29232358	29232436	29232358	ID=Msa0946940-mRNA-1:exon:7733;Parent=Msa0946940-mRNA-1
chr6_3	exon	29234803	29234903	29234803	ID=Msa0946940-mRNA-1:exon:7734;Parent=Msa0946940-mRNA-1
chr6_3	exon	29234980	29235088	29234980	ID=Msa0946940-mRNA-1:exon:7735;Parent=Msa0946940-mRNA-1
chr6_3	exon	29235182	29235469	29235182	ID=Msa0946940-mRNA-1:exon:7736;Parent=Msa0946940-mRNA-1
chr6_3	five_prime_UTR	29230629	29231274	29230629	ID=Msa0946940-mRNA-1:five_prime_utr;Parent=Msa0946940-mRNA-1
chr6_3	five_prime_UTR	29231363	29231401	29231363	ID=Msa0946940-mRNA-1:five_prime_utr;Parent=Msa0946940-mRNA-1
chr6_3	CDS	29231402	29231556	29231402	ID=Msa0946940-mRNA-1:cds;Parent=Msa0946940-mRNA-1
chr6_3	CDS	29231752	29231806	29231752	ID=Msa0946940-mRNA-1:cds;Parent=Msa0946940-mRNA-1
chr6_3	CDS	29232358	29232436	29232358	ID=Msa0946940-mRNA-1:cds;Parent=Msa0946940-mRNA-1
chr6_3	CDS	29234803	29234903	29234803	ID=Msa0946940-mRNA-1:cds;Parent=Msa0946940-mRNA-1
chr6_3	CDS	29234980	29235088	29234980	ID=Msa0946940-mRNA-1:cds;Parent=Msa0946940-mRNA-1
chr6_3	CDS	29235182	29235264	29235182	ID=Msa0946940-mRNA-1:cds;Parent=Msa0946940-mRNA-1
chr6_3	three_prime_UTR	29235265	29235469	29235265	ID=Msa0946940-mRNA-1:three_prime_utr;Parent=Msa0946940-mRNA-1

Gene Sequence

>Msa0946940

ATGTTTAAGAAGTTTGGGAATATTTTGTCAAGTAAAGTTGTAATGTCTGAGGATGGGAAGAGTAAAGGATATGACTTTGTTCAATTTGAAACGGAGGAATCTGCAAATGCTGCTATTGACAAGTTGAATGGATATCTTGTTGATGATAAGCAAATAAGAAGGGCTGGGTCAATCAACAGTCCCCTCATTTTTCATCTTACATCAACAAAGTACTTTATTTTGTTGCATTTATCTGTTGGTGTTGTTGGGTTGATCTATGTTGTGTTTTCTTTATTTTCCACTATTGTGAAAAGTCGTCTAACTCAGGACGAGGCACGATTTTATGCAGCTGAAGTTGTCGATGCTCTTGAATACATACACAATTTAGGAGTGATACATCGTGATATTAAGCCAGAGAACTTGTTACTTACAAATGAAGGACGTATTAAAATAGCTGATTTTGGTAGTGTGGAGCCTATGCAGGATAGCCAAATTACTGTTCTTCCAAATGCAACATCAGATGACAAAGCCTGCACATTTGTGGGAACTGCTGCTTATGTCCCTCCAAAGGTTCTTAATTCCTCCCCAGCAACCTTTGGGTAA

Protein sequence

>Msa0946940

MFKKFGNILSSKVVMSEDGKSKGYDFVQFETEESANAAIDKLNGYLVDDKQIRRAGSINSPLIFHLTSTKYFILLHLSVGVVGLIYVVFSLFSTIVKSRLTQDEARFYAAEVVDALEYIHNLGVIHRDIKPENLLLTNEGRIKIADFGSVEPMQDSQITVLPNATSDDKACTFVGTAAYVPPKVLNSSPATFG*