AlfalfaGEDB | Msa0947350

M. sativa cultivar zhongmu-4 / Msa0947350

KEGG: K04422
GO: GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
PFAM: PF00564.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0947350	XP_013451600.1	93.323	1258	65	4	1	1243	1	1254	0.0	2404

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0947350	sp\|Q9FPR3\|EDR1_ARATH	36.418	335	184	9	891	1222	616	924	1.74e-48	191

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0947350	MtrunA17_Chr6g0461841	93.323	1258	65	4	1	1243	1	1254	0.0	2404
Msa0947350	MtrunA17_Chr1g0196631	74.390	328	79	1	907	1229	846	1173	2.12e-169	534
Msa0947350	MtrunA17_Chr1g0196631	36.481	466	237	12	28	444	23	478	1.59e-56	214
Msa0947350	MtrunA17_Chr2g0310761	74.367	316	78	2	916	1230	901	1214	1.09e-155	499
Msa0947350	MtrunA17_Chr2g0310761	64.662	133	46	1	190	322	168	299	4.79e-44	175
Msa0947350	MtrunA17_Chr2g0310781	74.675	308	74	2	916	1223	809	1112	1.65e-155	496
Msa0947350	MtrunA17_Chr2g0310781	43.265	245	123	7	101	341	66	298	4.58e-43	171
Msa0947350	MtrunA17_Chr8g0357611	73.139	309	81	1	915	1223	1331	1637	2.20e-150	494
Msa0947350	MtrunA17_Chr8g0357611	44.811	212	99	5	125	322	101	308	5.02e-40	162
Msa0947350	MtrunA17_Chr2g0305141	71.293	317	88	1	920	1236	1050	1363	5.82e-148	482

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0947350	AT3G24715.1	81.470	313	53	1	922	1229	797	1109	4.30e-178	556
Msa0947350	AT3G24715.1	35.081	553	277	18	35	541	22	538	1.98e-55	211
Msa0947350	AT3G24715.3	81.470	313	53	1	922	1229	797	1109	4.30e-178	556
Msa0947350	AT3G24715.3	35.081	553	277	18	35	541	22	538	1.98e-55	211
Msa0947350	AT3G24715.2	81.470	313	53	1	922	1229	797	1109	4.30e-178	556
Msa0947350	AT3G24715.2	35.081	553	277	18	35	541	22	538	1.98e-55	211
Msa0947350	AT1G04700.1	76.636	321	75	0	909	1229	719	1039	4.11e-172	538
Msa0947350	AT1G04700.1	42.236	322	115	9	43	352	30	292	1.87e-49	192
Msa0947350	AT1G04700.2	76.636	321	75	0	909	1229	719	1039	4.11e-172	538
Msa0947350	AT1G04700.2	42.236	322	115	9	43	352	30	292	1.87e-49	192

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Find 327 sgRNAs with CRISPR-Local

Find 491 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCACCTTAAGTGGATC+TGG	0.446803	6_3:+29973964	Msa0947350:CDS
AAAATGCGAGCACATTGGGA+TGG	0.654590	6_3:-29976429	None:intergenic
AAAATTCTTTGAAATCAGAA+AGG	0.534064	6_3:+29974010	Msa0947350:CDS
AAACAAACCATGCTCGTCTC+CGG	0.512830	6_3:-29972177	None:intergenic
AAACAGGAACATTCCGCCTC+TGG	0.434630	6_3:+29974645	Msa0947350:CDS
AAACGTAATACGCTTGTATC+TGG	0.353558	6_3:+29977266	Msa0947350:CDS
AAACTTAGGTGTTATTAGGG+AGG	0.556976	6_3:+29972029	Msa0947350:five_prime_UTR
AAACTTTCGGAGTTTATTGC+TGG	0.358857	6_3:-29974471	None:intergenic
AAAGAAGTCAAGACTAGGGT+TGG	0.524432	6_3:+29978163	Msa0947350:three_prime_UTR
AAAGAATCGTATTCTTAAGA+AGG	0.490985	6_3:+29974050	Msa0947350:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAAATGAAGGTTCAATTATG+GGG	-	chr6_3:29971311-29971330	None:intergenic	30.0%
AAAACTTAAAAAAGTGGGGT+TGG	-	chr6_3:29971375-29971394	None:intergenic	30.0%
TACCTAATCTGTTATAAAGG+TGG	-	chr6_3:29971470-29971489	None:intergenic	30.0%
GTTGTTATAGTAAACACTCT+TGG	+	chr6_3:29971858-29971877	Msa0947350:five_prime_UTR	30.0%
ATCTTTATCTCGATGAATCT+CGG	-	chr6_3:29971898-29971917	None:intergenic	30.0%
AGATTCATCGAGATAAAGAT+TGG	+	chr6_3:29971898-29971917	Msa0947350:five_prime_UTR	30.0%
GTGTGTTGAATTGAAAACTT+AGG	+	chr6_3:29972015-29972034	Msa0947350:five_prime_UTR	30.0%
AAATTGATAGGTAACAACAC+CGG	+	chr6_3:29972158-29972177	Msa0947350:CDS	30.0%
ACATAATAATATCCCTAAGC+AGG	+	chr6_3:29972244-29972263	Msa0947350:CDS	30.0%
TCTCTTCAACCCTAAAATAT+TGG	-	chr6_3:29972402-29972421	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_3	gene	29971162	29978460	29971162	ID=Msa0947350;Name=Msa0947350
chr6_3	mRNA	29971162	29978460	29971162	ID=Msa0947350-mRNA-1;Parent=Msa0947350;Name=Msa0947350-mRNA-1;_AED=0.08;_eAED=0.08;_QI=502\|1\|1\|1\|0.87\|0.77\|9\|318\|1243
chr6_3	exon	29971162	29971329	29971162	ID=Msa0947350-mRNA-1:exon:7918;Parent=Msa0947350-mRNA-1
chr6_3	exon	29971803	29974896	29971803	ID=Msa0947350-mRNA-1:exon:7919;Parent=Msa0947350-mRNA-1
chr6_3	exon	29974977	29975063	29974977	ID=Msa0947350-mRNA-1:exon:7920;Parent=Msa0947350-mRNA-1
chr6_3	exon	29975525	29975677	29975525	ID=Msa0947350-mRNA-1:exon:7921;Parent=Msa0947350-mRNA-1
chr6_3	exon	29976385	29976548	29976385	ID=Msa0947350-mRNA-1:exon:7922;Parent=Msa0947350-mRNA-1
chr6_3	exon	29976625	29976772	29976625	ID=Msa0947350-mRNA-1:exon:7923;Parent=Msa0947350-mRNA-1
chr6_3	exon	29977239	29977361	29977239	ID=Msa0947350-mRNA-1:exon:7924;Parent=Msa0947350-mRNA-1
chr6_3	exon	29977453	29977540	29977453	ID=Msa0947350-mRNA-1:exon:7925;Parent=Msa0947350-mRNA-1
chr6_3	exon	29977934	29978460	29977934	ID=Msa0947350-mRNA-1:exon:7926;Parent=Msa0947350-mRNA-1
chr6_3	five_prime_UTR	29971162	29971329	29971162	ID=Msa0947350-mRNA-1:five_prime_utr;Parent=Msa0947350-mRNA-1
chr6_3	five_prime_UTR	29971803	29972136	29971803	ID=Msa0947350-mRNA-1:five_prime_utr;Parent=Msa0947350-mRNA-1
chr6_3	CDS	29972137	29974896	29972137	ID=Msa0947350-mRNA-1:cds;Parent=Msa0947350-mRNA-1
chr6_3	CDS	29974977	29975063	29974977	ID=Msa0947350-mRNA-1:cds;Parent=Msa0947350-mRNA-1
chr6_3	CDS	29975525	29975677	29975525	ID=Msa0947350-mRNA-1:cds;Parent=Msa0947350-mRNA-1
chr6_3	CDS	29976385	29976548	29976385	ID=Msa0947350-mRNA-1:cds;Parent=Msa0947350-mRNA-1
chr6_3	CDS	29976625	29976772	29976625	ID=Msa0947350-mRNA-1:cds;Parent=Msa0947350-mRNA-1
chr6_3	CDS	29977239	29977361	29977239	ID=Msa0947350-mRNA-1:cds;Parent=Msa0947350-mRNA-1
chr6_3	CDS	29977453	29977540	29977453	ID=Msa0947350-mRNA-1:cds;Parent=Msa0947350-mRNA-1
chr6_3	CDS	29977934	29978142	29977934	ID=Msa0947350-mRNA-1:cds;Parent=Msa0947350-mRNA-1
chr6_3	three_prime_UTR	29978143	29978460	29978143	ID=Msa0947350-mRNA-1:three_prime_utr;Parent=Msa0947350-mRNA-1

Gene Sequence

>Msa0947350

ATGGCTTTAAATAAGACAGGAAAATTGATAGGTAACAACACCGGAGACGAGCATGGTTTGTTTCCTCAATACACTCAACCAGAAGTACGCAGTGGTGCTGCAAATGTACATAATAATATCCCTAAGCAGGTTGGGGGGAAAATTTCTGCGAATAATGTTCGTGATGGAGTTGGTGGTGGAAGAGTTCTTGATACATCTCGAAATCGTGAGAGTAGGTTTGGGTTGAATAGGGAGAACGGACATGTGAGATACGAAGATCTTACCAATATTTTAGGGTTGAAGAGAATGGACTCTGAAAGTTTTTCTGATGTAAGTGACTTTATCCCTAACAGCCAGCCAGCGGCACAAGAGATAGAAAACGGTGTTTCTCCGAACATTTTAAGCAAAACTCAAAAGGGAGACGGCGAAAACAGTGGCCTTGGTGTGTTGAAGAAGACCTTTAGTGAAACAATTTGCGACAAAACCGGTACTAGACAAGGTGTATCATCACCCATTTACAGACATGAAAGATCTCACTCCAATGGGTTTTCTGGTTCTGGAACTTTAGACGATTCTTTGTCTGGTGGGAAAATGAAGTTTCTTTGCAGCTTCGGCGGAAAAATATTACCAAGGCCAGGTGATGGTAAACTCAGATATGTTGGTGGAGAAACTCACATTATATCTATTCGAAATGATATTTCGTGGCAAGAGCTTATGAACAAGACTTTAGGTATTTGCAGTCAGCCTCACACGATAAAATACCAACTTCCAGGGGAAGATCTCGATGCTCTAATATCGGTTTCCTCCGACGAGGATCTTCAAAATATGATAGAGGAATACCATGGACTTGAAAGTCATGAAGGTTCTCAGAAACTTCGAATATTTTTAGTTCCTTTGGGTGAATCTGAAGAGTCACCGTCAGCCGATGGAAACACCGTTCTGCAGAATGACACTGATTATCAATACGTTGTTGCATTAAACGGCGTAATAGACCATAGTCCTAAGAAAAACATCAGTGGACCGAGTTTGACCAACGAAGCAAATCATTCAGCGAAAACTTTCAATTTCACCCCAACAGTTACCTCTTCTCCTTTGGAGATCAGGGATGGTAATAATGGTATGAACGCTTTAAATCTTCAAAGTCCGTTGCGAATTTCTCCTACTCCAGTTCAAGTTGCAGGTTCTAGTACAGGTTATATTCAATTGCTCGGTAACAACTCATGCCAGGGAAGTATTGACAGCAACGCGTCATTTGTTACCGCTCAGATATACTCCGGAAACTCGAGCATTAACACTGCTGATTGCAGATACCCTCAGCAACCATCTGCTACTTTGGTAAGTGACAGTCATCCTTGTCAACACGGCAACGTTGGTCAACCCAAGAATCTCAATGGACAGTATTTTGACGATTACAGTACTGTATATGCTAGCCAAAGTAATGGTTACGGTGATGAAGCTCTCGGTGGAACTTTGCATAAGGATACAATATTTTACTCTGGAAATTCAATCTCTCAACAGATCGAATCTCATGGGATGCCTCATGCTTTTTCTGATTCGCAGTTGCATGAAAGTGGAGCAAAGTCTGGTTACTGCTCACAAGAAGGAATTACTCCATCTCTCTCCTTGAACCTTGAAAAGTTTCAATTATCTTCGTTGTTAGGTGTCTCGAAAGTGAACCTTACGGAGGGTCAACACGATCCCTTTCTCCATTATCCTCAAATACAAAGTAAGATACCGAATGTGGAGTCGACTGAGATGCACAGATGGCAAGGTGCTGCATCTTCTTCTTCCTACTCAGAATCAGTAAGAACGGATGATCGTATTAACAAGGACAGCATTTTATCTGAAAAAAGCACCTTAAGTGGATCTGGCTTTGTAGAAAAGGACGTGCTGGAAAATTCTTTGAAATCAGAAAGGATGTTGATAAATGAAGAAAAGAATCGTATTCTTAAGAAGGATAACAAGGTTTATGAGGGAAATCCAACTGTCGATTATATGAGTGAATTGTATCTTTTGGATACATTCCCTACTAATAACGTAAGTGATAAGATTGGTGTGCAAAATAATTGGGAACAATCTTGTGTGGACACGCATCCTTCGTCATCAGGCATGATGGGATTCTCGCTAAATAACCTTATGGACAAGACCCCGTCTGATCTTCATAACATCGGCCAAAAGACAGGTGATGGAAGAAACATCGATTTAAATTCTCCAATCCCACAATGTGCAGAAAGCCCGTGTGACAAAAGTTCTGAAAGAGATCACATGTTCAAGTTTTCCTTTGATCCACATTCTCTTAAATCTGCACAAATTCAGCCTTCTCAGAATCAGATCACTACAGGTTTTCACGATAATCCAGCAATAAACTCCGAAAGTTTGTATCCTGCTGTACTTCATGATGATGTCCGTCCATGTTTGAACTTGCCGGTTGATGGCCTGGATAATTCAAGCAAGAATATATCTTTTGCAAAGGCACCTTCATTTCTCGATGACTTGATTACAAGCCTTGATCAAACGGTTGATCAGTTTAAACAGGAACATTCCGCCTCTGGACTGTCAAAAGTTGAAGGTGTAATTTTAGGACAACCAAAAAATTCAGAAAGGTGTAATGATGCAAATCGAGTGGAGCCGTTTCTTGTACTAGACGATGTAACCGGTGTTGTTCCTGCACGTCCTAAGTCTTCACCAGTACACACCTCACATGATTTTGATGATGTTGGAAGCGATGTATCTCCATCTCATACAGAAGTAGAGAGCACCATTCCAGAGTCTGATACTGAGGATTTTAAAGACGACCAAGCCGACGTGAACGACTTCCTTTCTGATGCAATGATAGCAGAAATGGAGGCCAGCATATATGGTTTGCAGATAATTAGGAACGCTGATCTTGAAGAACTTATGGAGTTAGGATCTGGTACCTACGGAACTGTTTATCATGGAAAATGGCGAGGAACCGATGTAGCCATCAAGAGAATTAAAAAGAGCTGCTTTGCTGGAAGATCTTCTGAGCAAGAACGGTTGGCAAGAGATTTCTGGAGAGAGGCACAGATCCTGTCAAATCTTCACCATCCCAATGTGCTCGCATTTTATGGAATCGTACCGGATGGTACTGGTGGAACCCTAGCAACTGTAACAGAATATATGGTTAACGGCTCCCTTAGGCATGTTCTTGTCAAGAACTACAGATTACTAGATCGTCGCAAAAAGCTTATAATTGCCATGGATGCAGCCTTTGGTATGGAATATTTGCACTCAAAGAATATTGTCCATTTTGATTTAAAGTGTGACAATTTGCTCGTCAATCTAAGGGATCCACAACGACCCATATGCAAGGTTGGAGATTTTGGATTATCAAGAATTAAACGTAATACGCTTGTATCTGGTGGTGTGCGAGGAACCCTTCCATGGATGGCACCTGAGCTGTTGAATGGTAATAGCAGCCGGGTTTCAGAAAAGGTTGATGTTTTCTCATTCGGCATCTCCATGTGGGAGTTATTGACAGGAGAGGAACCTTATGCAGATATGCACTGTGGTGCCATTATTGGGGGCATTGTAAAGAACACACTTCGACCACCGATTCCAGAACGATGTGATCCTGAATGGAGGAAACTTATGGAAGAGTGTTGGTCACGTGAACCCGAATGTCGGCCATCGTTCACCGAGATAACAGGCAGGTTAAGATCTATGTCTATGACCCTTCAAGGAAAGGGAAATTATCAGGCATGGCAGTTGAGACCTAGTAATGAACTTTGA

Protein sequence

>Msa0947350

MALNKTGKLIGNNTGDEHGLFPQYTQPEVRSGAANVHNNIPKQVGGKISANNVRDGVGGGRVLDTSRNRESRFGLNRENGHVRYEDLTNILGLKRMDSESFSDVSDFIPNSQPAAQEIENGVSPNILSKTQKGDGENSGLGVLKKTFSETICDKTGTRQGVSSPIYRHERSHSNGFSGSGTLDDSLSGGKMKFLCSFGGKILPRPGDGKLRYVGGETHIISIRNDISWQELMNKTLGICSQPHTIKYQLPGEDLDALISVSSDEDLQNMIEEYHGLESHEGSQKLRIFLVPLGESEESPSADGNTVLQNDTDYQYVVALNGVIDHSPKKNISGPSLTNEANHSAKTFNFTPTVTSSPLEIRDGNNGMNALNLQSPLRISPTPVQVAGSSTGYIQLLGNNSCQGSIDSNASFVTAQIYSGNSSINTADCRYPQQPSATLVSDSHPCQHGNVGQPKNLNGQYFDDYSTVYASQSNGYGDEALGGTLHKDTIFYSGNSISQQIESHGMPHAFSDSQLHESGAKSGYCSQEGITPSLSLNLEKFQLSSLLGVSKVNLTEGQHDPFLHYPQIQSKIPNVESTEMHRWQGAASSSSYSESVRTDDRINKDSILSEKSTLSGSGFVEKDVLENSLKSERMLINEEKNRILKKDNKVYEGNPTVDYMSELYLLDTFPTNNVSDKIGVQNNWEQSCVDTHPSSSGMMGFSLNNLMDKTPSDLHNIGQKTGDGRNIDLNSPIPQCAESPCDKSSERDHMFKFSFDPHSLKSAQIQPSQNQITTGFHDNPAINSESLYPAVLHDDVRPCLNLPVDGLDNSSKNISFAKAPSFLDDLITSLDQTVDQFKQEHSASGLSKVEGVILGQPKNSERCNDANRVEPFLVLDDVTGVVPARPKSSPVHTSHDFDDVGSDVSPSHTEVESTIPESDTEDFKDDQADVNDFLSDAMIAEMEASIYGLQIIRNADLEELMELGSGTYGTVYHGKWRGTDVAIKRIKKSCFAGRSSEQERLARDFWREAQILSNLHHPNVLAFYGIVPDGTGGTLATVTEYMVNGSLRHVLVKNYRLLDRRKKLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLRDPQRPICKVGDFGLSRIKRNTLVSGGVRGTLPWMAPELLNGNSSRVSEKVDVFSFGISMWELLTGEEPYADMHCGAIIGGIVKNTLRPPIPERCDPEWRKLMEECWSREPECRPSFTEITGRLRSMSMTLQGKGNYQAWQLRPSNEL*